Psyllid ID: psy12713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
Protein Sequence
MFMDRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHcHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHcHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEc
Coil and Loop (DISEMBL)
mfmdrgaqhakeeiskrsffkpsKQFIKTYLksfpndpilqpdglsngveltngdtneshELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLvedtsvdpkikvNAHIKRAVVHLHAASDFTKAFADldeaekvdpnvadsyyqrgqIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHkmivpgdreRVEQSLKEFRNFVDTHSNVVEACTLFAQVLVdqedfdgaeEYFNRsirvdpenaSLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERynikkkvsprsqnitkNEKLAIKQLREnndiiirpadkggktvvmdkADYTQKMTSIlnsndyeiipgdptktieesekygnlenesgqkhAASDFTKAFAdldeaekvdpnvadsyyqrgqIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFsdefmipkityyil
Flexible Loop (DISEMBL)
mfmdrgaqhakeeiskrsffkpsKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTeeiestssnHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNrsirvdpeNASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNikkkvsprsqnitkneklaikqlrenndiiirpadkggktvvMDKADYTQKMtsilnsndyeiipGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELmafsdefmipkitYYIL
Low Complexity Region (SEG)
MFMDRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Disordered region (IsUnstruct)
*************************FIKTYLKSF***********************************RAFEHEDYLTAIRHCTEEIE*****HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK***************AIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI*********************************************PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYI*
Disordered Region (DISOPRED)
MFMDR**QHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Disordered Region (DISEMBL)
*************ISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Disordered Region (DISPRO)
MFMDRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFMDRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKITYYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	551	2.2.26 [Sep-21-2011]
O94826	608	Mitochondrial import rece	yes	N/A	0.662	0.600	0.373	2e-65
Q9CZW5	611	Mitochondrial import rece	yes	N/A	0.662	0.597	0.370	1e-64
Q75Q39	610	Mitochondrial import rece	yes	N/A	0.662	0.598	0.370	2e-64
P23231	624	Mitochondrial import rece	N/A	N/A	0.615	0.543	0.280	1e-28
O14217	625	Probable mitochondrial im	yes	N/A	0.591	0.521	0.259	8e-23
P07213	617	Mitochondrial import rece	yes	N/A	0.426	0.380	0.264	7e-12
A6ZRW3	617	Mitochondrial import rece	N/A	N/A	0.426	0.380	0.264	7e-12
Q58741	314	TPR repeat-containing pro	yes	N/A	0.417	0.732	0.217	2e-10
Q58350	318	TPR repeat-containing pro	no	N/A	0.297	0.515	0.267	4e-08
P38825	639	Protein TOM71 OS=Saccharo	no	N/A	0.370	0.319	0.244	1e-07

>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G + AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+  E  E 
Sbjct: 236 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 295

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct: 296 SGYLKAKQYMEEENYDKIISECSKEIDAEGKYMAEAL--LLRATFYLLIGNANAAKPDLD 353

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           +++     + K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ+  
Sbjct: 354 KVISLKEANVKLRANALIKRGSMYMQQQQPLL-STQDFNMAADIDPQNADVYHHRGQLKI 412

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
           L  Q EEA+ + D+ I L P   +A+AQ+ F +++    G+   +++ ++K F   +   
Sbjct: 413 LLDQVEEAVADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKF 472

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D  ++
Sbjct: 473 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDRGLE 532

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 533 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 592

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 593 AQTEVAKKYGLK 604

Receptor that accelerates the import of all mitochondrial precursor proteins.
Homo sapiens (taxid: 9606)

>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=2

 Score =  247 bits (631), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G ++AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+  E  E 
Sbjct: 239 GKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 298

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct: 299 SGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEAL--LLRATFYLLIGSANAAKPDLD 356

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           +++     + K++ NA IKR  + +        +  D + A ++DP  +D Y+ RGQ+  
Sbjct: 357 KVISLKEANVKLRANALIKRGTMCMQQQQPML-STQDFNMAAEIDPMNSDVYHHRGQLKI 415

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI-VPGDRERVEQSLKEFRNFVDTH 241
           L    EEA+ + D  I L P F +A+AQ+ F +++      +  +V+ ++K F   +   
Sbjct: 416 LLDLVEEAVADFDACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKF 475

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 476 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 535

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 536 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 595

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 596 AQTEVAKKYGLK 607

Receptor that accelerates the import of all mitochondrial precursor proteins.

Mus musculus (taxid: 10090)

>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1

 Score =  247 bits (631), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G ++AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+  E  E 
Sbjct: 238 GKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 297

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct: 298 SGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEAL--LLRATFYLLIGSANAAKPDLD 355

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           +++     + K++ NA IKR  + +        +  D + A ++DP  +D Y+ RGQ+  
Sbjct: 356 KVISLKEANVKLRANALIKRGTMCMQQQQPML-STQDFNMAAEIDPMNSDVYHHRGQLKI 414

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI-VPGDRERVEQSLKEFRNFVDTH 241
           L    EEA+ + D  I L P F +A+AQ+ F +++      +  +V+ ++K F   +   
Sbjct: 415 LLDLVEEAVADFDACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKF 474

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 475 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 534

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 535 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 594

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 595 AQTEVAKKYGLK 606

Receptor that accelerates the import of all mitochondrial precursor proteins.

Rattus norvegicus (taxid: 10116)

>sp|P23231|TOM70_NEUCR Mitochondrial import receptor subunit tom-70 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom-70 PE=2 SV=2

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 184/374 (49%), Gaps = 35/374 (9%)

Query: 10  AKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLS-KA 68
           AKE +  +    PS  F+  YL+SF + P  +P+GL + VEL+        +L L   ++
Sbjct: 256 AKEILETKPPKLPSSTFVGNYLQSFRSKP--RPEGLEDSVELSEETGLGQLQLGLKHLES 313

Query: 69  KRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT 128
           K    +E+   A +     ++       +ALA  LR T +    +  +A+ DL++ +E  
Sbjct: 314 KTGTGYEEGSAAFKKA---LDLGELGPHEALAYNLRGTFHCLMGKHEEALADLSKSIE-- 368

Query: 129 SVDPKIKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
            +DP +   ++IKRA ++L       A  DF KA     E    DP++   YY R Q++ 
Sbjct: 369 -LDPAM-TQSYIKRASMNLELGHPDKAEEDFNKAI----EQNAEDPDI---YYHRAQLHF 419

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
           + G++ EA ++  K+I L+ +F  +  Q     +KM        +  S+  FR  +    
Sbjct: 420 IKGEFAEAAKDYQKSIDLDSDFIFSHIQLGVTQYKM------GSIASSMATFRRCMKNFD 473

Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL------YVHRAMLMLQARGNV 296
              +    + ++L+DQ  F  A E F+ +I ++ E   +       +++A+ + Q + + 
Sbjct: 474 QTPDVYNYYGELLLDQNKFQEAIEKFDTAIALEKETKPMCMNVLPLINKALALFQWKQDY 533

Query: 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
            EA +L EKA+ ID  C  A  T+  + +Q+G++ EA+K F +A  LAR E EL +  S 
Sbjct: 534 AEAEQLCEKALIIDPECDIAVATMAQLLLQQGKVVEALKFFERAAELARTEGELVNALSY 593

Query: 357 RDAAIAQMKVCERY 370
            +A   Q++V E Y
Sbjct: 594 AEATRTQIQVQENY 607

Receptor that accelerates the import of all mitochondrial precursor proteins. Seems to act in conjunction with mom19.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom70 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom70 PE=1 SV=1

 Score =  108 bits (271), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 168/355 (47%), Gaps = 29/355 (8%)

Query: 22  PSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAI 81
           P+  FI+TYL SF      QP  L +     +GD   +   + L K +       Y  A 
Sbjct: 283 PAASFIQTYLDSFH----AQPKPLFDNK--FDGDAALAEAYEYLEKGEYQL---SYDKAK 333

Query: 82  RHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141
             C     S S N   A    L  T    +  S  ++E+    ++   +D K  +  +I+
Sbjct: 334 ESCLGSFSSPSVN---ARTHNLVGTFKFVSGDSKGSMENFNAAIK---LDRKF-IQPYIR 386

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
            +  +L   +D  K +  L++AE VD   +D YY R Q+  + G++ EA+ +  K+IAL+
Sbjct: 387 LSAAYLDE-NDNEKMWKVLNDAESVDKTDSDLYYHRAQVRFVSGEFAEAISDYQKSIALD 445

Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
            +F  +  Q     +K         + +S+K F +      N  E    F ++L+DQ+ F
Sbjct: 446 DSFIYSHIQLGVAQYKT------HAIAESMKTFEDCKKRFPNSSEVYNYFGEILLDQQKF 499

Query: 262 DGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
           D A + F+ +I ++        +A   +++A+ + Q + ++ +A  L  +A+S D  C  
Sbjct: 500 DDAVKNFDHAIELEKREHLTIMSAMPLINKALAVFQWKKDISQAENLCRQALSADPECDI 559

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY 370
           A  ++    +Q+G+  EA++ F K+  LAR E+E+ + +S  +A   Q+ + E+Y
Sbjct: 560 AIASMAQFLLQQGKAREALEYFEKSAQLARTESEMVNAFSYAEATRTQIALTEKY 614

Receptor that accelerates the import of all mitochondrial precursor proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P07213|TOM70_YEAST Mitochondrial import receptor subunit TOM70 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM70 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +VN++I  A++ +   +D T+ +   D+A K+D N +  YY RGQ+  +   Y++A ++ 
Sbjct: 362 RVNSYIYMALI-MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 420

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
           DK   L+P       Q   + ++     D E +    K  R F +      E    FA++
Sbjct: 421 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK--RKFPEAP----EVPNFFAEI 474

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------GNVDEAIKLIEKA 306
           L D+ DFD A + ++ +I ++ +   +YV  A L+ +A          N  EA  L+EKA
Sbjct: 475 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 534

Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
             +D     A   L  +++Q+  ++EA+  F ++  LAR   E     +  +AA  Q ++
Sbjct: 535 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRI 594

Query: 367 CERYNIKKKV 376
                + KK+
Sbjct: 595 RSDPVLAKKI 604

Component of the TOM (translocase of outer membrane) receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM20 and TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the TOM40 translocation pore.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZRW3|TOM70_YEAS7 Mitochondrial import receptor subunit TOM70 OS=Saccharomyces cerevisiae (strain YJM789) GN=TOM70 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +VN++I  A++ +   +D T+ +   D+A K+D N +  YY RGQ+  +   Y++A ++ 
Sbjct: 362 RVNSYIYMALI-MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 420

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
           DK   L+P       Q   + ++     D E +    K  R F +      E    FA++
Sbjct: 421 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK--RKFPEAP----EVPNFFAEI 474

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------GNVDEAIKLIEKA 306
           L D+ DFD A + ++ +I ++ +   +YV  A L+ +A          N  EA  L+EKA
Sbjct: 475 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 534

Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
             +D     A   L  +++Q+  ++EA+  F ++  LAR   E     +  +AA  Q ++
Sbjct: 535 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRI 594

Query: 367 CERYNIKKKV 376
                + KK+
Sbjct: 595 RSDPVLAKKI 604

Component of the TOM (translocase of outer membrane) receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM20 and TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the TOM40 translocation pore.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 99  LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK-VNAHIKRAVVHLHAASDFTKAF 157
           LA  L+  + +   +  +A E   +L      D  +K V A I      L    ++  A 
Sbjct: 80  LANFLKGALLVSLGKLEEAKEVFLKLCRLEKSDLPVKYVTAFI------LKKLGEYDYAL 133

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
             +D+  K  P  A ++ ++G+I    G+ +++L   D  + +NP    +   +  ++ K
Sbjct: 134 KIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLYKGEILFK 193

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
           +       R  ++LK  +   + ++  + A     Q+L+     + A EY  ++++++P+
Sbjct: 194 L------GRYGEALKCLKKVFERNNKDIRALMYIIQILIYLGRLNQALEYTKKALKLNPD 247

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
           +  LY+++ + +L   G  +EAIK  +K + I+ +   A+        + G++ EA++C+
Sbjct: 248 DPLLYLYKGI-ILNKLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGKINEAIECY 306

Query: 338 NKAL 341
           N+AL
Sbjct: 307 NRAL 310

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q58350|Y940_METJA TPR repeat-containing protein MJ0940 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0940 PE=4 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
           G   E+L  LDK + LNP+F  A+  +      + + GD  +  + L++    + ++SN 
Sbjct: 31  GNLLESLYYLDKALELNPDFKFAKFLKAI---SLAILGDINKSIECLED----ITSNSND 83

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
             A  L  Q+     +FD A E + +S+ ++ + A+ +  + +L L   G  DE +K  +
Sbjct: 84  PVAYALLGQLYELLGNFDNALECYEKSLGIEEKFATAFFLK-VLCLGLSGKYDELLKCCD 142

Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
           + IS   + + AY     +  + GR EEA+ C NK L L  ++    ++ +L
Sbjct: 143 RLISFAPNFIPAYIIKANMLRKLGRYEEALACVNKVLELKENDTNAIYLKAL 194

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P38825|TOM71_YEAST Protein TOM71 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM71 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)

Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
           F    +A  ++P    +YY RGQ+Y +   Y+ A  +  K  +LNP       Q   +++
Sbjct: 398 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 457

Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
           K      + +  +S   F         + E  T FA++L D+ DFD A + ++ + R++ 
Sbjct: 458 K------QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 511

Query: 277 ENASLYVHRAMLMLQAR----------GNVDE-----AIKLIEKAISIDKSCMFAYETLG 321
               ++V    L+ +A             +DE     AIKL+ KA  +D     A   L 
Sbjct: 512 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 571

Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
            +++Q  +++EA++ F  +  LAR   E     +  +AA  Q ++
Sbjct: 572 QLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 616

Involved in MBF1-mediated mitochondrial morphogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
291240441	575	PREDICTED: super sex combs-like [Saccogl	0.666	0.638	0.388	4e-69
270005628	557	hypothetical protein TcasGA2_TC007711 [T	0.646	0.639	0.425	2e-68
189236082	1440	PREDICTED: similar to rCG36659 [Triboliu	0.646	0.247	0.425	9e-68
357604397	547	putative heat shock protein 70-interacti	0.635	0.639	0.402	2e-67
344294611	610	PREDICTED: mitochondrial import receptor	0.664	0.6	0.381	5e-66
327268894	548	PREDICTED: mitochondrial import receptor	0.656	0.660	0.381	7e-66
449277464	501	Mitochondrial import receptor subunit TO	0.662	0.728	0.381	1e-65
126325626	612	PREDICTED: mitochondrial import receptor	0.662	0.596	0.381	1e-65
326912988	515	PREDICTED: mitochondrial import receptor	0.662	0.708	0.384	2e-65
156550027	575	PREDICTED: mitochondrial import receptor	0.640	0.613	0.391	2e-65

>gi|291240441|ref|XP_002740127.1| PREDICTED: super sex combs-like [Saccoglossus kowalevskii]

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 226/373 (60%), Gaps = 6/373 (1%)

Query: 4   DRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTNGDTNESHE 61
           D G + AK++ S R+   PSKQFIK+Y  SF  D   QP   G ++  +    ++ E+ +
Sbjct: 202 DMGKEKAKKKYSTRTPSMPSKQFIKSYFSSFAQDITTQPLEKGDNDDEDKDKDESVETPK 261

Query: 62  LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDL 121
                KA+  F++EDY   I  CT+EI+S       A+  L+RAT Y+   Q+      L
Sbjct: 262 SSGYRKAREYFDNEDYDKIIDECTKEIDSEGPCMAHAV--LMRATFYMLKGQANLGKPGL 319

Query: 122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181
             +++  S D  ++VNA IKR  +++   +  T+A  D  +A ++DP  AD Y+ RGQ+ 
Sbjct: 320 DDVIDMESADKMLRVNALIKRGSMYMQQGNS-TEALNDFAQAVRIDPENADIYHHRGQLN 378

Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDT 240
            L  + +EAL++ +K ++LNP F +A+AQ  + +++         +++ ++  F   +  
Sbjct: 379 VLLDRVDEALKDFEKCVSLNPGFALAQAQHCYAMYRAAFAQRSPMQLQAAMNAFEKVIKD 438

Query: 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300
             N  E   LFAQ L DQ+ +  A+E F ++++++PEN + YVHR +LMLQ + +VD A+
Sbjct: 439 FPNCAEGYALFAQALNDQQQYSQADEMFLKAMKLEPENPTTYVHRGLLMLQWKQDVDTAV 498

Query: 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360
           KL++K++ ID  C FAYETLGTIEVQRG LE A++ F KA+ LAR E E++H+YSL DAA
Sbjct: 499 KLMKKSLEIDDKCDFAYETLGTIEVQRGNLEHAIQLFEKAIDLARTEMEMAHLYSLLDAA 558

Query: 361 IAQMKVCERYNIK 373
           IAQ +V   YNI+
Sbjct: 559 IAQTRVATMYNIR 571

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|270005628|gb|EFA02076.1| hypothetical protein TcasGA2_TC007711 [Tribolium castaneum]

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 224/371 (60%), Gaps = 15/371 (4%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTN-GDTNESHELDL 64
           G +HA+E +  R    PSK FIKTY  SF  D + Q        +LT  GD     EL  
Sbjct: 190 GKKHAQEAMLNRKPIIPSKTFIKTYFSSFSEDVVYQ--------KLTEVGDPLGQGELSG 241

Query: 65  LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHT-KALARLLRATVYIFTSQSTKAIEDLTQ 123
             KAK AF  E Y   I  CTEEI S+ S    K  A  LRA+ Y  T    KA+EDLT 
Sbjct: 242 FLKAKLAFATEKYEEIIPSCTEEINSSESESPFKIEALSLRASFYFLTGNLDKALEDLTT 301

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
           ++ +T  D KIKVN+ IKRA +++      T+   D D+A +V P ++D ++ RGQ+  L
Sbjct: 302 II-NTDCDVKIKVNSLIKRASIYMQN-EKLTECLEDFDKAAEVGPEISDVFHHRGQVKLL 359

Query: 184 FGQYEEALRNLDKTIALNPNFHVARAQRHF--VVHKMIVPGDRERVEQSLKEFRNFVDTH 241
             +  EA+ +  K + LNPNF VA  Q+ +    H M V  D + + QSL  F+  ++  
Sbjct: 360 MEKTNEAILDFQKAVDLNPNFSVAFVQKCYSDYRHAMQVQ-DVQLLMQSLANFKKGIEKF 418

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
              VE   L+AQVL +++D++ A++ + +++ +D ENAS+YVHR +LMLQ +G +++A++
Sbjct: 419 PTCVETYVLYAQVLTEKQDYEEADKLYGKALEIDSENASIYVHRGLLMLQWKGEIEQAVE 478

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           L+++ I ID  C FAYETLGT+EVQRG L  A+  FNKA+ LAR E EL+H++SLRDAA 
Sbjct: 479 LMKEGIKIDDKCEFAYETLGTVEVQRGNLVVAIDLFNKAIALARSEMELTHLFSLRDAAT 538

Query: 362 AQMKVCERYNI 372
           +Q+KV  R  I
Sbjct: 539 SQLKVTTRLGI 549

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236082|ref|XP_972621.2| PREDICTED: similar to rCG36659 [Tribolium castaneum]

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 224/371 (60%), Gaps = 15/371 (4%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTN-GDTNESHELDL 64
           G +HA+E +  R    PSK FIKTY  SF  D + Q        +LT  GD     EL  
Sbjct: 247 GKKHAQEAMLNRKPIIPSKTFIKTYFSSFSEDVVYQ--------KLTEVGDPLGQGELSG 298

Query: 65  LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHT-KALARLLRATVYIFTSQSTKAIEDLTQ 123
             KAK AF  E Y   I  CTEEI S+ S    K  A  LRA+ Y  T    KA+EDLT 
Sbjct: 299 FLKAKLAFATEKYEEIIPSCTEEINSSESESPFKIEALSLRASFYFLTGNLDKALEDLTT 358

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
           ++ +T  D KIKVN+ IKRA +++      T+   D D+A +V P ++D ++ RGQ+  L
Sbjct: 359 II-NTDCDVKIKVNSLIKRASIYMQN-EKLTECLEDFDKAAEVGPEISDVFHHRGQVKLL 416

Query: 184 FGQYEEALRNLDKTIALNPNFHVARAQRHF--VVHKMIVPGDRERVEQSLKEFRNFVDTH 241
             +  EA+ +  K + LNPNF VA  Q+ +    H M V  D + + QSL  F+  ++  
Sbjct: 417 MEKTNEAILDFQKAVDLNPNFSVAFVQKCYSDYRHAMQVQ-DVQLLMQSLANFKKGIEKF 475

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
              VE   L+AQVL +++D++ A++ + +++ +D ENAS+YVHR +LMLQ +G +++A++
Sbjct: 476 PTCVETYVLYAQVLTEKQDYEEADKLYGKALEIDSENASIYVHRGLLMLQWKGEIEQAVE 535

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           L+++ I ID  C FAYETLGT+EVQRG L  A+  FNKA+ LAR E EL+H++SLRDAA 
Sbjct: 536 LMKEGIKIDDKCEFAYETLGTVEVQRGNLVVAIDLFNKAIALARSEMELTHLFSLRDAAT 595

Query: 362 AQMKVCERYNI 372
           +Q+KV  R  I
Sbjct: 596 SQLKVTTRLGI 606

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604397|gb|EHJ64169.1| putative heat shock protein 70-interacting protein [Danaus plexippus]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 28/378 (7%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLL 65
           G QHA+E ++KR    PSK FIKTY  +F  DPI++       VEL    TN        
Sbjct: 192 GRQHAREALAKRRPVMPSKHFIKTYFSAFSEDPIVK-------VELEENATNG------F 238

Query: 66  SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV 125
           +KAK A +  DY + +  CTEE++S      +AL  LLRAT Y+   +  +A+ DL  ++
Sbjct: 239 AKAKHALDSLDYESVVDACTEELDSNGKYKFEAL--LLRATFYLLLGRHDEALTDLAAVI 296

Query: 126 EDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG 185
            D+    K++VNA IKRA +      +  +   D   A K+DPN +D Y+ RGQ+Y L  
Sbjct: 297 -DSDAPVKVRVNALIKRASLFTQL-ENTDRCLEDFATAAKLDPNNSDIYHHRGQVYLLLE 354

Query: 186 QYEEALRNLDKTIALNPNFHVARAQ------RHFVVHKMIVPGDRERVEQSLKEFRNFVD 239
           + +EA     K + LNP+F +A  Q      RH  +HK +       + Q   +F   ++
Sbjct: 355 RMDEATAEFAKAVELNPDFSIAYIQKCYADYRHAQLHKNVTA-----LTQVRADFERALE 409

Query: 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299
                 E   L+AQVL DQ+++  AE  F  ++ VDP NA+LYVH+ ++ LQ   + D+A
Sbjct: 410 RFPRCAEVYILYAQVLSDQQEWGHAEALFESALAVDPSNATLYVHKGLVQLQKSTDFDKA 469

Query: 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
           +KLI KAI ID  C FAYETLGTIEVQRG L  +++ F KA+ LA+ E E++H++SL+DA
Sbjct: 470 VKLINKAIEIDDKCDFAYETLGTIEVQRGNLRRSLELFEKAIALAKTEQEMTHLFSLKDA 529

Query: 360 AIAQMKVCERYNIKKKVS 377
           A AQ+KV ER+ +   VS
Sbjct: 530 AAAQLKVSERWGLDWTVS 547

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344294611|ref|XP_003419010.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Loxodonta africana]

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 218/372 (58%), Gaps = 6/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G + AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+  E  E 
Sbjct: 237 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPTLKGEKSDEDKDKEGEALEVKEN 296

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               KAK+  E E+Y   I  C++EI++    H +A A LLRAT Y+    ++ A  DL 
Sbjct: 297 SGYLKAKQYMEEENYDKIISECSKEIDAEGGRH-RAEALLLRATFYLLVGNASAAKPDLD 355

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           Q++     D K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ+  
Sbjct: 356 QVISLKGADVKLRANALIKRGSMYMQQQEPLL-STQDFNMAADIDPQNADVYHHRGQLKI 414

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
           L  Q EEA+ + D+ I L P   +A+AQ+ F +++    G+   +++ ++K F   +   
Sbjct: 415 LLDQVEEAVADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKF 474

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 475 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 534

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 535 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 594

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 595 AQTEVAKKYGLK 606

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327268894|ref|XP_003219230.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Anolis carolinensis]

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 222/375 (59%), Gaps = 13/375 (3%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLL 65
           G + AKE+   R    PS QFIK+Y  SF +D I QP  L  G E ++ D ++  E  ++
Sbjct: 176 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQP--LLKG-EKSDEDKDKEGEASVV 232

Query: 66  S------KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIE 119
                  KAK+  + E+Y   I  CT+EIE+      +AL  LLRAT Y+    +  A  
Sbjct: 233 KENCGYLKAKKYMDEENYDKIISECTKEIEAKGKYMAEAL--LLRATFYLLIGNANAAKP 290

Query: 120 DLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 179
           DL Q++     + K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ
Sbjct: 291 DLNQVISMEDANVKLRANALIKRGSMYMQQQQPML-STQDFNMAADIDPQNADVYHHRGQ 349

Query: 180 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFV 238
           +  L  Q EEA+ + D+ I L P+  +A+AQ+ F +++    G    +V+ ++K F + +
Sbjct: 350 LKILLDQVEEAVEDFDECIRLRPDSALAQAQKCFALYRQAYTGSNSLQVQAAMKGFEDVI 409

Query: 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298
                  E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+
Sbjct: 410 KKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDK 469

Query: 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRD 358
            ++LI KAI ID  C FAYET+GTIEVQRG L++A++ FNKA+ LA+ E E++H+YSL D
Sbjct: 470 GLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIEMFNKAINLAKSETEMAHLYSLCD 529

Query: 359 AAIAQMKVCERYNIK 373
           AA AQ +V ++Y +K
Sbjct: 530 AAYAQTEVAKKYGLK 544

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449277464|gb|EMC85620.1| Mitochondrial import receptor subunit TOM70, partial [Columba livia]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G + AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+ +E  E 
Sbjct: 129 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPLLKGEKSDEDKDKEGEASEVKEN 188

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               +AK+  E E+Y   I  CT+EIE+      +AL  LLRAT Y+    +  A  DL 
Sbjct: 189 SGYLRAKQYMEEENYDKIISECTKEIEAKGKYMAEAL--LLRATFYLLIGNANAAKPDLD 246

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           Q++     + K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ+  
Sbjct: 247 QVISMEDANVKLRANALIKRGSMYMQQQQPVL-STQDFNMAADIDPQNADVYHHRGQLKI 305

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
           L  Q EEA+ + D+ I L P+  +A+AQ+ F +++    G+    V+ ++K F + +   
Sbjct: 306 LLDQIEEAVEDFDECIRLRPDSALAQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKF 365

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 366 PKCAEGYALYAQALTDQQQFGKADEMYDKCIELEPDNATTYVHKGLLQLQWKQDLDKGLE 425

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG L++A++ FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 426 LISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAY 485

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 486 AQTEVAKKYGLK 497

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126325626|ref|XP_001363876.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Monodelphis domestica]

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G + AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+  E  E 
Sbjct: 240 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 299

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               KAK+  E E+Y   I  CT+EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct: 300 SGYLKAKQYMEEENYDKIISECTKEIDAQGKYTAEAL--LLRATFYLLIGNANAAKPDLD 357

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           Q++     + K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ+  
Sbjct: 358 QVISMEEANVKLRANALIKRGSMYMQQQQPLL-STQDFNMAADIDPQNADVYHHRGQLKI 416

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
           L  Q EEA+ + D+ I L P+  +A+AQ+ F +++    G+   +V+ ++K F + +   
Sbjct: 417 LLDQVEEAVADFDECIRLRPDSALAQAQKCFALYRQAYTGNNSTQVQAAMKGFEDVIKKF 476

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
           S   E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 477 SRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 536

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG +++A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 537 LISKAIEIDNKCDFAYETMGTIEVQRGNMDKAIDMFNKAINLAKSEMEMAHLYSLCDAAY 596

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 597 AQTEVAKKYGLK 608

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326912988|ref|XP_003202825.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Meleagris gallopavo]

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 7/372 (1%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP---DGLSNGVELTNGDTNESHEL 62
           G + AKE+   R    PS QFIK+Y  SF +D I QP      S+  +   G+ +E  E 
Sbjct: 143 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPLLKGEKSDEDKDKEGEASEVKEN 202

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               +AK+  E E+Y   I  CT+EIE+      +AL  LLRAT Y+    +  A  DL 
Sbjct: 203 SGYLRAKQYMEEENYDKIISECTKEIEAKGKYMAEAL--LLRATFYLLIGNANAAKPDLD 260

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           Q++     + K++ NA IKR  +++        +  D + A  +DP  AD Y+ RGQ+  
Sbjct: 261 QVISMEDANVKLRANALIKRGSMYMQQQQPAL-STQDFNMAADIDPQNADVYHHRGQLKI 319

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
           L  Q EEA+ + D+ I L P+  +A+AQ+ F +++    G+    V+ ++K F + V   
Sbjct: 320 LLDQIEEAVEDFDECIRLRPDSALAQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVVKKF 379

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
               E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct: 380 PKCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 439

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           LI KAI ID  C FAYET+GTIEVQRG L++A++ FNKA+ LA+ E E++H+YSL DAA 
Sbjct: 440 LISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAY 499

Query: 362 AQMKVCERYNIK 373
           AQ +V ++Y +K
Sbjct: 500 AQTEVAKKYGLK 511

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156550027|ref|XP_001604755.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Nasonia vitripennis]

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 220/368 (59%), Gaps = 15/368 (4%)

Query: 6   GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLL 65
           G QHA+E ++ +    PSK FI TY  +F NDPIL         +L   +T E +     
Sbjct: 206 GKQHAQEYMATKKPIMPSKHFIGTYFLAFHNDPIL--------AKLDGSETVEDN--TPF 255

Query: 66  SKAKRAFEHEDYLTAIRHCTEEIESTSSNHT---KALARLLRATVYIFTSQSTKAIEDLT 122
           +KA  A + ++Y   I  CTEE+++ +++     K    +LR T Y+   Q   A+EDL+
Sbjct: 256 NKALTALKKQEYDDVIPLCTEELKNLATDEDSLHKMEVLVLRGTFYLLLGQHENALEDLS 315

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
            ++   +   ++KVNA IKRA +++   S   K+F D ++AEK+D N  D Y+ RGQ++ 
Sbjct: 316 AVIGSDASSKELKVNALIKRASMYIQLESA-EKSFNDFEDAEKLDRNCGDVYHNRGQVHL 374

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG-DRERVEQSLKEFRNFVDTH 241
           L  + +EA  + +K + LNP F VA  Q+ F  ++  V   D   +  S+  F    +  
Sbjct: 375 LMERVDEAKADFEKAVELNPGFGVAYVQKCFADYRFAVSKRDMNLMNTSMTNFNKAFEKF 434

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
            +  E  TL+AQ+LVD +DF  A+ YF ++ + DP+NA++ V+R +L LQ + N+++A++
Sbjct: 435 PDCSECYTLYAQMLVDSQDFARADSYFLKAAKRDPKNATILVYRGLLQLQWQNNIEKAVE 494

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
            I KAI +D  C FAYETLGTIEVQRG L++A+  F+KAL L R   EL+HI+SLRDAA 
Sbjct: 495 YIRKAIELDDKCEFAYETLGTIEVQRGNLKDAISLFDKALALGRTSMELTHIFSLRDAAQ 554

Query: 362 AQMKVCER 369
           AQ+ V +R
Sbjct: 555 AQLTVSDR 562

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.662	0.609	0.381	7.6e-64
UNIPROTKB|Q08E34	609	TOMM70A "Translocase of outer	0.662	0.599	0.373	1.1e-62
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.662	0.600	0.373	2.3e-62
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.662	0.597	0.370	1.6e-61
RGD|1303049	610	Tomm70a "translocase of outer	0.662	0.598	0.370	2.1e-61
FB|FBgn0032397	589	Tom70 "Translocase of outer me	0.675	0.631	0.366	1.2e-58
ASPGD|ASPL0000066455	636	AN7687 [Emericella nidulans (t	0.626	0.542	0.269	6e-27
POMBASE|SPAC6B12.12	625	tom70 "mitochondrial TOM compl	0.535	0.472	0.252	4.3e-21
SGD|S000005065	617	TOM70 "Component of the TOM (t	0.571	0.510	0.262	1.8e-13
CGD|CAL0001055	629	TOM70 [Candida albicans (taxid	0.618	0.542	0.220	1.8e-11

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 142/372 (38%), Positives = 218/372 (58%)

Query:     6 GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTN-GDTNESHEL 62
             G + AKE+   R    PS QFIK+Y  SF +D I QP   G  +  +    G+ +E  E 
Sbjct:   227 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPLLKGEKSDEDKDKEGEASEVKEN 286

Query:    63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                 +AK+  E E+Y   I  CT+EIE+      +AL  LLRAT Y+    +  A  DL 
Sbjct:   287 SGYLRAKQYMEEENYDKIISECTKEIEAKGKYMAEAL--LLRATFYLLIGNANAAKPDLD 344

Query:   123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
             Q++     + K++ NA IKR  +++           D + A  +DP  AD Y+ RGQ+  
Sbjct:   345 QVISMEDANVKLRANALIKRGSMYMQQQQPALST-QDFNMAADIDPQNADVYHHRGQLKI 403

Query:   183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER-VEQSLKEFRNFVDTH 241
             L  Q EEA+ + D+ I L P+  +A+AQ+ F +++    G+    V+ ++K F + +   
Sbjct:   404 LLDQIEEAVEDFDECIRLRPDSALAQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKF 463

Query:   242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
                 E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct:   464 PKCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 523

Query:   302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
             LI KAI ID  C FAYET+GTIEVQRG L++A++ FNKA+ LA+ E E++H+YSL DAA 
Sbjct:   524 LISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAY 583

Query:   362 AQMKVCERYNIK 373
             AQ +V ++Y +K
Sbjct:   584 AQTEVAKKYGLK 595

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q08E34 TOMM70A "Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 139/372 (37%), Positives = 215/372 (57%)

Query:     6 GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTN-GDTNESHEL 62
             G + AKE+   R    PS QFIK+Y  SF +D I QP   G  +  +    G+  E  E 
Sbjct:   237 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 296

Query:    63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                 KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct:   297 SGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEAL--LLRATFYLLIGNANAAKPDLD 354

Query:   123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
             +++     + K++ NA IKR  +++           D + A  +DP  AD Y+ RGQ+  
Sbjct:   355 KVISLQEANVKLRANALIKRGSMYMQQQQPLLST-QDFNMAADIDPQNADVYHHRGQLKI 413

Query:   183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
             L  Q EEA+ + D+ I L P   +A+AQ+ F +++    G+   +++ ++K F   +   
Sbjct:   414 LLDQVEEAVADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKF 473

Query:   242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
                 E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct:   474 PRCAEGYALYAQALTDQQQFGKADEMYDKCINLEPDNATTYVHKGLLQLQWKQDLDKGLE 533

Query:   302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
             LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct:   534 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 593

Query:   362 AQMKVCERYNIK 373
             AQ +V ++Y +K
Sbjct:   594 AQTEVAKKYGLK 605

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 139/372 (37%), Positives = 214/372 (57%)

Query:     6 GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTN-GDTNESHEL 62
             G + AKE+   R    PS QFIK+Y  SF +D I QP   G  +  +    G+  E  E 
Sbjct:   236 GKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 295

Query:    63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                 KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct:   296 SGYLKAKQYMEEENYDKIISECSKEIDAEGKYMAEAL--LLRATFYLLIGNANAAKPDLD 353

Query:   123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
             +++     + K++ NA IKR  +++           D + A  +DP  AD Y+ RGQ+  
Sbjct:   354 KVISLKEANVKLRANALIKRGSMYMQQQQPLLST-QDFNMAADIDPQNADVYHHRGQLKI 412

Query:   183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
             L  Q EEA+ + D+ I L P   +A+AQ+ F +++    G+   +++ ++K F   +   
Sbjct:   413 LLDQVEEAVADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKF 472

Query:   242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
                 E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D  ++
Sbjct:   473 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDRGLE 532

Query:   302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
             LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct:   533 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 592

Query:   362 AQMKVCERYNIK 373
             AQ +V ++Y +K
Sbjct:   593 AQTEVAKKYGLK 604

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 138/372 (37%), Positives = 214/372 (57%)

Query:     6 GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTN-GDTNESHEL 62
             G ++AKE+   R    PS QFIK+Y  SF +D I QP   G  +  +    G+  E  E 
Sbjct:   239 GKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 298

Query:    63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                 KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct:   299 SGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEAL--LLRATFYLLIGSANAAKPDLD 356

Query:   123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
             +++     + K++ NA IKR  + +           D + A ++DP  +D Y+ RGQ+  
Sbjct:   357 KVISLKEANVKLRANALIKRGTMCMQQQQPMLST-QDFNMAAEIDPMNSDVYHHRGQLKI 415

Query:   183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
             L    EEA+ + D  I L P F +A+AQ+ F +++     +   +V+ ++K F   +   
Sbjct:   416 LLDLVEEAVADFDACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKF 475

Query:   242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
                 E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct:   476 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 535

Query:   302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
             LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct:   536 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 595

Query:   362 AQMKVCERYNIK 373
             AQ +V ++Y +K
Sbjct:   596 AQTEVAKKYGLK 607

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 138/372 (37%), Positives = 214/372 (57%)

Query:     6 GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQP--DGLSNGVELTN-GDTNESHEL 62
             G ++AKE+   R    PS QFIK+Y  SF +D I QP   G  +  +    G+  E  E 
Sbjct:   238 GKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGEKSDEDKDKEGEALEVKEN 297

Query:    63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                 KAK+  E E+Y   I  C++EI++      +AL  LLRAT Y+    +  A  DL 
Sbjct:   298 SGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEAL--LLRATFYLLIGSANAAKPDLD 355

Query:   123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
             +++     + K++ NA IKR  + +           D + A ++DP  +D Y+ RGQ+  
Sbjct:   356 KVISLKEANVKLRANALIKRGTMCMQQQQPMLST-QDFNMAAEIDPMNSDVYHHRGQLKI 414

Query:   183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTH 241
             L    EEA+ + D  I L P F +A+AQ+ F +++     +   +V+ ++K F   +   
Sbjct:   415 LLDLVEEAVADFDACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKF 474

Query:   242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
                 E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ +L LQ + ++D+ ++
Sbjct:   475 PRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLE 534

Query:   302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
             LI KAI ID  C FAYET+GTIEVQRG +E+A+  FNKA+ LA+ E E++H+YSL DAA 
Sbjct:   535 LISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAH 594

Query:   362 AQMKVCERYNIK 373
             AQ +V ++Y +K
Sbjct:   595 AQTEVAKKYGLK 606

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

FB|FBgn0032397 Tom70 "Translocase of outer membrane 70" [Drosophila melanogaster (taxid:7227)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 143/390 (36%), Positives = 222/390 (56%)

Query:     1 MFMDR-----GAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGD 55
             MF DR     G   A++ +  R    PS  F+ TY +SF  DP LQ    +  V     D
Sbjct:   202 MFADRVLKETGRLDAEKGMRNRVPVVPSACFVNTYTRSFIADP-LQ----TMKVPAPKSD 256

Query:    56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQS 114
                   L    +A  AF  E Y   I  CTEEIES+ +    K  A L+R T ++     
Sbjct:   257 APPKGFL----RAHLAFLEEKYEEIIPACTEEIESSEAEVQYKVEALLMRGTFHLLCGSY 312

Query:   115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
              ++ +D   ++ +   DP ++  A+IKRA +++       K  AD  EAE+++P   D Y
Sbjct:   313 VESQQDFDAIIANDYADPNLRAYAYIKRAALYIQL-DQREKGIADFAEAERLNPENPDVY 371

Query:   175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKE 233
             +QR QI  L  Q E AL   +K +++ PN  +A  Q+ +  +++ ++ GD+ R+E  +  
Sbjct:   372 HQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAGDQRRLESVMHT 431

Query:   234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
             F+N ++   + VE  +L AQVL DQ+ F  AEEY+ +++ + P N +L VH+A+++LQ R
Sbjct:   432 FQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQWR 491

Query:   294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
             G+++ A++L+ KAI +D  C  AYETLGT+EVQR +L  AV+ F KAL  A+ +AEL H+
Sbjct:   492 GDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHV 551

Query:   354 YSLRDAAIAQMKVCERYNIK-KKVSPRSQN 382
             YSLR+AA+AQ+ V ++  I    VS  +Q+
Sbjct:   552 YSLRNAAVAQINVTKKLGIDMNSVSAMAQS 581

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

ASPGD|ASPL0000066455 AN7687 [Emericella nidulans (taxid:162425)]

 Score = 329 (120.9 bits), Expect = 6.0e-27, P = 6.0e-27
 Identities = 99/367 (26%), Positives = 179/367 (48%)

Query:    11 KEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKR 70
             KE +  +    PS  F+  YL+SF   P   P+GL    ++            LL+ AK+
Sbjct:   265 KEILEAKGKKLPSPTFVSNYLQSFR--PKSLPEGLDESADIPEESGKGQLRKGLLAMAKK 322

Query:    71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV 130
                 + Y  A     + +E       + LA   RAT       +  A+ DL + VE   +
Sbjct:   323 T--GDGYEEAAAAFVKALELGDLGEFEGLALNQRATFTYLQGNAHNALADLNKSVE---L 377

Query:   131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
             DP + V ++IKRA +HL   +    A  D + A   + +  D YY R Q++ + G++ EA
Sbjct:   378 DPSL-VQSYIKRASLHLELGNK-DAAQDDFELAITHNKDDPDIYYHRAQLHFILGEFAEA 435

Query:   191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL 250
              ++  K+I L+  F  +  Q     +KM   G    V  ++  FR  V    +V +    
Sbjct:   436 AKDYQKSIDLDRTFIYSHIQLGVTQYKM---GS---VASAMATFRRSVKNFEDVPDVYNY 489

Query:   251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASL------YVHRAMLMLQARGNVDEAIKLIE 304
             + ++L+DQ++F  A E F++++ ++ ++  +       +++A+ + Q + +  EA +L +
Sbjct:   490 YGELLLDQQNFSEAIEKFDKAVEMEKQSKPMSINVLPLINKALALFQWKHDFAEAEQLCQ 549

Query:   305 KA-ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
             KA I +D  C  A  T+  + +Q+G++ +A+K F +A  LAR E E+ +  S  +A   Q
Sbjct:   550 KALIIVDPECDIAVGTMAQLLLQQGKVSQALKYFERAAELARTEPEIVNAISYAEATRTQ 609

Query:   364 MKVCERY 370
             ++V E+Y
Sbjct:   610 LEVQEKY 616

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

POMBASE|SPAC6B12.12 tom70 "mitochondrial TOM complex subunit Tom70 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 277 (102.6 bits), Expect = 4.3e-21, P = 4.3e-21
 Identities = 79/313 (25%), Positives = 153/313 (48%)

Query:    65 LSKAKRAFEHEDYLTAIRHCTEE-IESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
             L++A    E  +Y  +     E  + S SS    A    L  T    +  S  ++E+   
Sbjct:   313 LAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKFVSGDSKGSMENFNA 372

Query:   124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
              ++   +D K  +  +I+ +  +L   +D  K +  L++AE VD   +D YY R Q+  +
Sbjct:   373 AIK---LDRKF-IQPYIRLSAAYLDE-NDNEKMWKVLNDAESVDKTDSDLYYHRAQVRFV 427

Query:   184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243
              G++ EA+ +  K+IAL+ +F  +  Q     +K         + +S+K F +      N
Sbjct:   428 SGEFAEAISDYQKSIALDDSFIYSHIQLGVAQYKT------HAIAESMKTFEDCKKRFPN 481

Query:   244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNVD 297
               E    F ++L+DQ+ FD A + F+ +I ++        +A   +++A+ + Q + ++ 
Sbjct:   482 SSEVYNYFGEILLDQQKFDDAVKNFDHAIELEKREHLTIMSAMPLINKALAVFQWKKDIS 541

Query:   298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
             +A  L  +A+S D  C  A  ++    +Q+G+  EA++ F K+  LAR E+E+ + +S  
Sbjct:   542 QAENLCRQALSADPECDIAIASMAQFLLQQGKAREALEYFEKSAQLARTESEMVNAFSYA 601

Query:   358 DAAIAQMKVCERY 370
             +A   Q+ + E+Y
Sbjct:   602 EATRTQIALTEKY 614

GO:0005739 "mitochondrion" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISO

GO:0008565 "protein transporter activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISO

SGD|S000005065 TOM70 "Component of the TOM (translocase of outer membrane) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 208 (78.3 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 92/350 (26%), Positives = 163/350 (46%)

Query:    50 ELTNGDTNESHELD------LLSKAKRAFEH-----EDYLTAIRHCTEEIESTSSNHT-- 96
             ELT  + +ES+E D      L +  KR+ E      E +  A R   E+++  + +    
Sbjct:   267 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 326

Query:    97 KALARLLRAT-VYIFTSQSTK-AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFT 154
             + LA  L  T ++ F       A ED+ + +E   + P+  VN++I  A++ +   +D T
Sbjct:   327 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE---LFPR--VNSYIYMALI-MADRNDST 380

Query:   155 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214
             + +   D+A K+D N +  YY RGQ+  +   Y++A ++ DK   L+P       Q   +
Sbjct:   381 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 440

Query:   215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 274
              ++     D E +    K  R F +      E    FA++L D+ DFD A + ++ +I +
Sbjct:   441 AYRENKFDDCETLFSEAK--RKFPEAP----EVPNFFAEILTDKNDFDKALKQYDLAIEL 494

Query:   275 DPENASLYVHRAMLM----LQARG----NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326
             + +   +YV  A L+    L  R     N  EA  L+EKA  +D     A   L  +++Q
Sbjct:   495 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 554

Query:   327 RGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376
             +  ++EA+  F ++  LAR   E     +  +AA  Q ++     + KK+
Sbjct:   555 QEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAKKI 604

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0016020 "membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IDA;IMP

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IGI

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015266 "protein channel activity" evidence=IMP

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

CGD|CAL0001055 TOM70 [Candida albicans (taxid:5476)]

 Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 80/363 (22%), Positives = 153/363 (42%)

Query:    13 EISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAF 72
             E   +    PS   I ++  +F  +   +P+G++   E        +    + +  +  +
Sbjct:   260 ESKPKKLILPSAATIGSFFGAFVEET--EPEGINESHENEGVKALYTALQKINANTQNGY 317

Query:    73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE--DTSV 130
             E  D L  I     E+ES   + T+    L  A  Y+   Q  K   D     E  + ++
Sbjct:   318 EEADEL--ISKAVTELESAIESATELKPVLAIALEYLAAFQFLK--NDPVSAAESIEKAI 373

Query:   131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
               K +  A++ RA+++   +S +  A  D   AE++D    D +Y  GQ++ L G    A
Sbjct:   374 SLKPRPRAYVFRALINADKSS-YEAALKDFKTAEELDDKCPDIFYHLGQLFYLTGDLTNA 432

Query:   191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL 250
               N +K   L+P+   A  Q   + +K    G  E   +   E +    T   V      
Sbjct:   433 EINFNKAKELHPDNVYAYIQLACITYKN---GQIELANEKFTEAKLKFPTSPEVPN---Y 486

Query:   251 FAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRA-MLMLQARGNVDEAIKLI 303
             + ++L D+ D  GA + F  + R+  +       A   ++ A ++  ++   + EA +L+
Sbjct:   487 YGEILADKGDIQGACKQFEIASRLQEKLDRFSVGALPLINEATVISRESLEKIGEAEELL 546

Query:   304 EKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
              KA ++D     A  +L  I++Q+  +++A+  F ++  LAR   E     S  +A   Q
Sbjct:   547 TKACALDPKSELARISLAQIKLQKDEVDDAIVLFEESSDLARSIEEKIQATSFAEATKMQ 606

Query:   364 MKV 366
              ++
Sbjct:   607 KRI 609

GO:0005886 "plasma membrane" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94826	TOM70_HUMAN	No assigned EC number	0.3736	0.6624	0.6003	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	551
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-34
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-15
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-14
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	6e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-05
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	5e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.002

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score =  137 bits (345), Expect = 2e-34
 Identities = 106/370 (28%), Positives = 180/370 (48%), Gaps = 27/370 (7%)

Query: 10  AKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAK 69
           AKE +  +    PS  F+  YL+SF   P  +P GL +  EL     +E      L    
Sbjct: 247 AKEILETKPENLPSVTFVGNYLQSFRPKP--RPAGLEDSNEL-----DEETGNGQLQLGL 299

Query: 70  RAFEH---EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126
           ++ E    E Y  A R   + ++       +A+A  LR T      +  +A+ DL++ +E
Sbjct: 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359

Query: 127 DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186
              +DP++   ++IKRA ++L    D  KA  D D+A K++    D YY R Q++ + G+
Sbjct: 360 ---LDPRVT-QSYIKRASMNLEL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414

Query: 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246
           + +A ++  K+I L+P+F  +  Q     +K         +  S+  FR          +
Sbjct: 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPD 468

Query: 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY------VHRAMLMLQARGNVDEAI 300
               + ++L+DQ  FD A E F+ +I ++ E   +Y      +++A+ + Q + +  EA 
Sbjct: 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528

Query: 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360
            L EKA+ ID  C  A  T+  + +Q+G ++EA+K F +A  LAR E EL    S  +A 
Sbjct: 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEAT 588

Query: 361 IAQMKVCERY 370
             Q++V E Y
Sbjct: 589 RTQIQVQEDY 598

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 91/509 (17%), Positives = 176/509 (34%), Gaps = 95/509 (18%)

Query: 86  EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145
           +E+ +    +  AL  LL+  + +       A+    + +    + P   +   +  A +
Sbjct: 183 DEVLTADPGNVDAL--LLKGDLLLSLGNIELALAAYRKAIA---LRPN-NIAVLLALATI 236

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
            +  A +F +A    D   K  PN   ++Y +  +      YE+A   L   +   P + 
Sbjct: 237 LI-EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

Query: 206 VAR---------------AQRHFVVHKMIVPGDRE-------------RVEQSLKEFRNF 237
            A                A ++        P   +             RV++++      
Sbjct: 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA 355

Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
           +    +   A +L  +  +   DF+ A EY  ++  +DPENA+      +  L ++G+  
Sbjct: 356 LGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL-SQGDPS 414

Query: 298 EAIKLIEKAISID---------------KSCMFA-------------------YETLGTI 323
           EAI  +E A  +D               +S  F                    +  LG I
Sbjct: 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474

Query: 324 EVQRGRLEEAVKCFNKALPLARDE----AELSHI-YSLRDAAIAQMKVCERYNIKKKVSP 378
            + +G L +A + F KAL +  D     A L+ I     +   A     +R+     + P
Sbjct: 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI----QRFEKVLTIDP 530

Query: 379 RSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGD 438
           +  N+     LA   LR  N       +         + +  Q++   L    Y +  G 
Sbjct: 531 K--NLRAILALAGLYLRTGN-----EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582

Query: 439 PTKTIEESEKYGNLENESGQ--------KHAASDFTKAFADLDEAEKVDPNVADSYYQRG 490
             K +    +  +   +S +        + AA D  KA +   +   + P+ A +     
Sbjct: 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642

Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
             Y +   Y +A+ +L + + L P+   A
Sbjct: 643 DAYAVMKNYAKAITSLKRALELKPDNTEA 671

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 89/449 (19%), Positives = 167/449 (37%), Gaps = 48/449 (10%)

Query: 92  SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS 151
           S  + K     L A  Y+   +  + +++L      T +D +        R + +L    
Sbjct: 84  SLGYPKNQVLPLLARAYLLQGKFQQVLDELP---GKTLLDDEGAAELLALRGLAYL-GLG 139

Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
               A    ++A  +DP    +     Q+     +++EA   +D+ +  +P    A   +
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

Query: 212 HFVVHKMIVPGDRERV----EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267
                     GD        E +L  +R  +    N +      A +L++  +F+ AE++
Sbjct: 200 ----------GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
            +  ++  P +   +  +A++  Q + N ++A + ++ A+      + A    G  E Q 
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQL 308

Query: 328 GRLEEAVKCFNKAL------PLARDEAELSHIYSLR-DAAIAQMKVCERYNIKKKVSPRS 380
           G LE+A +  N+ L        AR       +   R D AIA +             P +
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL---SPALGLDPDDPAA 365

Query: 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPT 440
            ++     LA+    +          K  +    + A  TQ   S L+        GDP+
Sbjct: 366 LSLLGEAYLALGDFEKA----AEYLAKATELDPENAAARTQLGISKLSQ-------GDPS 414

Query: 441 KTIEESEKYGNLENESGQKHAA--------SDFTKAFADLDEAEKVDPNVADSYYQRGQI 492
           + I + E    L+ E G+              F KA A   + EK  P+ A  +   G I
Sbjct: 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474

Query: 493 YCLFGQYEEALRNLDKTIALNPNFHVARA 521
           Y   G   +A    +K +++ P+F  A A
Sbjct: 475 YLGKGDLAKAREAFEKALSIEPDFFPAAA 503

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
           EA      +     D+D A EY+ +++ +DP+NA  Y + A       G  +EA++  EK
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAA-YYKLGKYEEALEDYEK 59

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
           A+ +D     AY  LG    + G+ EEA++ + KAL L  +
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 70.3 bits (170), Expect = 3e-13
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 4/231 (1%)

Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYE 188
            P   +   +    + L       +A   L++A ++   PN+A++    G +    G+YE
Sbjct: 53  LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112

Query: 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
           EAL  L+K +AL+P+  +A A         +  GD E   +  ++        + + EA 
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYEL--GDYEEALELYEKALELDPELNELAEAL 170

Query: 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
                +L     ++ A E   ++++++P++ +  +    L+    G  +EA++  EKA+ 
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230

Query: 309 IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
           +D     A   L  + ++ GR EEA++   KAL L  D   L     L  A
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLA 281

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 69.0 bits (169), Expect = 4e-12
 Identities = 71/353 (20%), Positives = 134/353 (37%), Gaps = 40/353 (11%)

Query: 23  SKQFIKTYLKSFPNDP----IL--------QPDGLSNGVELTNG-DTNESHELDLLSKAK 69
           + Q++   LK  PN      +L        + D     +    G D ++   L LL +A 
Sbjct: 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA- 372

Query: 70  RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS 129
                 D+  A  +  +  E    N   A AR       +     ++AI DL    +   
Sbjct: 373 -YLALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQ--- 425

Query: 130 VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE 189
           +DP++   A +   + +L +   F KA A   + EK  P+ A  +   G IY   G   +
Sbjct: 426 LDPELG-RADLLLILSYLRS-GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

Query: 190 ALRNLDKTIALNPNFHVAR---AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246
           A    +K +++ P+F  A    A+                 + +++ F   +      + 
Sbjct: 484 AREAFEKALSIEPDFFPAAANLARIDI---------QEGNPDDAIQRFEKVLTIDPKNLR 534

Query: 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
           A    A + +   + + A  +  ++  ++P+     +  A   L  +G + +A+ ++ +A
Sbjct: 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEA 593

Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYS 355
                    A+  LG  ++  G L +AV  F K L L  D A     L+  Y+
Sbjct: 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 41/139 (29%)

Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE 233
               G +Y   G Y+EAL   +K + L+P+   A                          
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL---------------------- 40

Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
                             A        ++ A E + +++ +DP+NA  Y +  +      
Sbjct: 41  ------------------AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA-YYKL 81

Query: 294 GNVDEAIKLIEKAISIDKS 312
           G  +EA++  EKA+ +D +
Sbjct: 82  GKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 87/466 (18%), Positives = 162/466 (34%), Gaps = 65/466 (13%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
           L+  AK   +   Y  AI      ++   ++   A AR L   +Y+       A ++L +
Sbjct: 25  LIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRK 81

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ----RGQ 179
            +      PK +V   + RA +              LDE         +   +    RG 
Sbjct: 82  ALSLGY--PKNQVLPLLARAYLLQGKFQQV------LDELPGKTLLDDEGAAELLALRGL 133

Query: 180 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239
            Y   GQ E A ++ ++ +A++P    A+     +             E    E R  +D
Sbjct: 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL----------AENRFDEARALID 183

Query: 240 T----HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
                    V+A  L   +L+   + + A   + ++I + P N ++ +  A ++++A G 
Sbjct: 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA-GE 242

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
            +EA K  +  +    +   A+     ++ Q+   E+A +    AL  A +      +  
Sbjct: 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG 302

Query: 356 LRDAAIAQMKVCERY-NIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVM 414
             +  +  ++   +Y N   K +P S    +   LA  QLR       R  +      + 
Sbjct: 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARR--LLASIQLRLG-----RVDE--AIATLS 353

Query: 415 DKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDE 474
                     + L+      +                         A  DF KA   L +
Sbjct: 354 PALGLDPDDPAALSLLGEAYL-------------------------ALGDFEKAAEYLAK 388

Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           A ++DP  A +  Q G      G   EA+ +L+    L+P    A 
Sbjct: 389 ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD 161
           L    +Y       +A+E   + +E   +DP     A+   A  +      + +A  D +
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALE---LDPDNAD-AYYNLAAAYYKL-GKYEEALEDYE 58

Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
           +A ++DP+ A +YY  G  Y   G+YEEAL   +K + L+PN
Sbjct: 59  KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 40/132 (30%)

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
             +   D+ +A    ++A ++DP+ AD+YY     Y   G+YEEAL + +K + L+P+  
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN- 67

Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
                                                   +A             ++ A 
Sbjct: 68  ---------------------------------------AKAYYNLGLAYYKLGKYEEAL 88

Query: 266 EYFNRSIRVDPE 277
           E + +++ +DP 
Sbjct: 89  EAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 14/219 (6%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
           AA D  KA +   +   + P+ A +       Y +   Y +A+ +L + + L P+   A+
Sbjct: 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
                 +    +    +R E + K  ++    H        L   + + Q+D+  A + +
Sbjct: 673 ------IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726

Query: 269 NRSIRVDPENASL-YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
            ++++  P + +   +HRA+L   A GN  EA+K +E  +    +       L  + + +
Sbjct: 727 RKALKRAPSSQNAIKLHRALL---ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783

Query: 328 GRLEEAVKCFNKALPLARDEA----ELSHIYSLRDAAIA 362
              ++A+K +   +  A D A     L+ +Y       A
Sbjct: 784 KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRA 822

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
              L    D+D A E + +++ +DP+NA  Y + A+  L+   + +EA++ +EKA+ +D 
Sbjct: 10  GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
              D+ +A    ++A ++DP+ AD+YY     Y   G+YEEAL + +K + L+P+   A 
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 521 AQR 523
              
Sbjct: 72  YNL 74

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
           +    G+ DEA++  EKA+ +D     AY  L     + G+ EEA++ + KAL L  D A
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68

Query: 349 EL 350
           + 
Sbjct: 69  KA 70

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-------CMFAYETLGTIEVQR 327
            P+ A+   + A L+L+  G+ DEA++L+EKA+ + +           A   L  + +  
Sbjct: 1   HPDLAAALNNLA-LVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59

Query: 328 GRLEEAVKCFNKALPLARD 346
           G  +EA++   KAL L   
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 9/208 (4%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
             I+ A  +L   + +  A   L  A + DPN A++ +  G+IY   G Y  A + L K 
Sbjct: 24  ELIEAAKSYL-QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKA 82

Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF-VDTHSNVVEACTLFAQVLV 256
           ++L             +    ++ G   + +Q L E     +       E   L     +
Sbjct: 83  LSLGYP---KNQVLPLLARAYLLQG---KFQQVLDELPGKTLLDDEGAAELLALRGLAYL 136

Query: 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
                + A++ + +++ +DP +    +  A L L A    DEA  LI++ ++ D   + A
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDA 195

Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLA 344
               G + +  G +E A+  + KA+ L 
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALR 223

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
            + +A  D ++A ++DP+ A +YY  G  Y   G+YEEAL   +K + L+PN
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-QYEEALRNLD 195
            A             D+ +A    ++A ++DP+ A++YY     Y   G  YEEAL +L+
Sbjct: 4   EALKNLGNALFKLG-DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 196 KTIALNP 202
           K + L+P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 16/273 (5%)

Query: 78  LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137
           L       +++ +   +   AL  L  A  Y       KAI  L + +E   + P     
Sbjct: 617 LNKAVSSFKKLLALQPDSALALLLL--ADAYAVMKNYAKAITSLKRALE---LKPDN-TE 670

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
           A I  A + L AA     A       +K  P  A  +   G +Y     Y  A++   K 
Sbjct: 671 AQIGLAQLLL-AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729

Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
           +   P+   A      ++         + +E  LK        H N     T  A++ + 
Sbjct: 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-------HPNDAVLRTALAELYLA 782

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
           Q+D+D A +++   ++  P+NA +  + A L L+ +     A++  E+A+ +  +     
Sbjct: 783 QKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAERALKLAPNIPAIL 840

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
           +TLG + V++G  + A+    KA+ +A + A +
Sbjct: 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 50/243 (20%)

Query: 162 EAEKVDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220
            +   D N  A    Q    Y   G  E A  NLDK +  +P+ ++A         ++  
Sbjct: 21  SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-- 78

Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
            G+ E+ E S   FR  +  + N  +    +   L  Q  ++ A + F ++I  DP    
Sbjct: 79  -GELEKAEDS---FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DP---- 129

Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
           LY   A                             + E  G   ++ G  ++A K   +A
Sbjct: 130 LYPQPAR----------------------------SLENAGLCALKAGDFDKAEKYLTRA 161

Query: 341 LPLARDEA----ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
           L +         EL+ +Y LR          ERY      +  S        L I+  R 
Sbjct: 162 LQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL------WLGIRIARA 215

Query: 397 NND 399
             D
Sbjct: 216 LGD 218

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
           D  KA  D D+A K++    D YY R Q++ + G++ +A ++  K+I L+P+F
Sbjct: 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-QYEEALRNLDKTIALNP 514
           D+ +A    ++A ++DP+ A++YY     Y   G  YEEAL +L+K + L+P
Sbjct: 18  DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
           A+  +   D+D A      ++   P  A   +     +L+ +G + EA  L+  A++ D
Sbjct: 4   ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLR-QGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.6 bits (106), Expect = 3e-05
 Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 12/269 (4%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA- 316
            +D   A      ++      A   +   + +L+  G + EA++L+E+A+ +  +   A 
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 317 -YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
               L    ++ GRLEEA++   KAL L         + +L     A  K  E   + +K
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEII 435
                 +    E L                +   K + +D     +   ++L        
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN-ELAEALLALGALLEA 179

Query: 436 PGDPTKTIEESEKYGNLENESGQK---------HAASDFTKAFADLDEAEKVDPNVADSY 486
            G   + +E  EK   L  +   +              + +A    ++A ++DP+ A++ 
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239

Query: 487 YQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           Y    +    G+YEEAL  L+K + L+P+
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
           ARG++D A  L++KA++ D  C+ A   LG + + +G    A++  
Sbjct: 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237

Length = 389

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 86/483 (17%), Positives = 165/483 (34%), Gaps = 96/483 (19%)

Query: 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL------HAASDF 153
           A LL    Y+ + Q  KA+    +L +    +     + H     ++L       A   F
Sbjct: 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA----SLHNLLGAIYLGKGDLAKAREAF 488

Query: 154 TKAF-------------ADLDEAEKVDPNVADSYYQR---------------GQIYCLFG 185
            KA              A +D  E  +P+ A   +++                 +Y   G
Sbjct: 489 EKALSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

Query: 186 QYEEALRNLDKTIALNPNFHVARAQ--RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243
             EEA+  L+K   LNP          ++++           +++++L       D   +
Sbjct: 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG--------QLKKALAILNEAADAAPD 599

Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 303
             EA  +  +  +   D + A   F + + + P++A   +           N  +AI  +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL-LLADAYAVMKNYAKAITSL 658

Query: 304 EKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-----IYSL-R 357
           ++A+ +      A   L  + +   R E A K   K+L     +A L       +Y   +
Sbjct: 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA-KSLQKQHPKAALGFELEGDLYLRQK 717

Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNI---------TKNEKLAIKQ----LREN-NDIIIR 403
           D   A     +      K +P SQN          + N   A+K     L+ + ND ++R
Sbjct: 718 DYPAAIQAYRKAL----KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773

Query: 404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAAS 463
            A         D     +   +++     +  P +       +  Y  L++    ++A  
Sbjct: 774 TALAELYLAQKDYDKAIKHYQTVV-----KKAPDNAVVLNNLAWLYLELKDPRALEYA-- 826

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN-----FHV 518
              +A           P + D+    G +    G+ + AL  L K + + P      +H+
Sbjct: 827 --ERALKLAPN----IPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

Query: 519 ARA 521
           A A
Sbjct: 878 ALA 880

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
           A + Y  G  Y   G+Y+EAL   +K + LNPN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
           A + Y  G  Y   G+Y+EAL   +K + LNPN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
           P   + +E  +      +  +    E   L  +  +       A   +  ++R+  +N  
Sbjct: 132 PPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191

Query: 281 LYVHRA-MLMLQARGNVD-EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
           + +  A  L  QA   +  +A  L+ +A+++D + + A   L     ++G   EA   + 
Sbjct: 192 ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ 251

Query: 339 KALPLARDEAE 349
             L L   +  
Sbjct: 252 MLLDLLPADDP 262

Length = 287

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
           + A++    G      G Y+EA+   +K + L+P+   A    
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           + A++    G      G Y+EA+   +K + L+P+   A    
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVK 335
           +NA    +    + +  G+ DEAI+  EKA+ +D     AY  L    ++ G   EEA++
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 336 CFNKAL 341
              KAL
Sbjct: 60  DLEKAL 65

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 18/171 (10%)

Query: 143 AVVHLHAASDFT----KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
             + LH A   +    +A   L+   K  PN A       ++Y     Y++A+++    +
Sbjct: 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

Query: 199 ALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK---EFRNFVDTHSNVVEACTLFAQVL 255
              P+  V      ++  ++  P   E  E++LK        +DT             +L
Sbjct: 798 KKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDT----------LGWLL 847

Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
           V++ + D A     +++ + PE A++  H A L L A G   EA K ++K 
Sbjct: 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLA-LALLATGRKAEARKELDKL 897

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
           A++ Y  G  Y   G Y+EAL   +K + L+PN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
           A++ Y  G  Y   G Y+EAL   +K + L+PN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 45/170 (26%)

Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
           D      A ++ A+ +L    D+ +A  +L++A + DP+   ++  R   Y   G+ + A
Sbjct: 30  DRNEAAKARLQLALGYL-QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLA 88

Query: 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD-----------RERVEQSLKEFRNFV- 238
             +  K ++L PN                  GD           + R E+++++F   + 
Sbjct: 89  DESYRKALSLAPN-----------------NGDVLNNYGAFLCAQGRPEEAMQQFERALA 131

Query: 239 --------DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
                   DT  N+   C L          FD AEEY  R++ +DP+   
Sbjct: 132 DPAYGEPSDTLENLG-LCAL------KAGQFDQAEEYLKRALELDPQFPP 174

Length = 250

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 33/111 (29%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
            P++A +      +    G Y+EAL  L                                
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELL-------------------------------- 28

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
            E++L+  R   + H     A    A++ +   D+D A EY  +++ +   
Sbjct: 29  -EKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 55/264 (20%), Positives = 98/264 (37%), Gaps = 48/264 (18%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
            +DF+ A + ++++I   P+    Y +RA     A G+ ++ ++    A+ +D     A 
Sbjct: 140 NKDFNKAIKLYSKAIECKPDPV-YYSNRAACH-NALGDWEKVVEDTTAALELDPDYSKAL 197

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
                     G+  +A+           D      I   R+   AQ    ER  +KK   
Sbjct: 198 NRRANAYDGLGKYADAL----------LDLTASCIIDGFRNEQSAQA--VER-LLKKFAE 244

Query: 378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPG 437
            +++ I +                 +P +    T V    +Y Q           E    
Sbjct: 245 SKAKEILET----------------KPENLPSVTFV---GNYLQSFRPKPRPAGLE---- 281

Query: 438 DPTKTIEESEKYGNLENESGQKH----AASDFTKAFADLDEA---EKVDPNVADSYYQRG 490
               + E  E+ GN + + G K     A   + +A    ++A    K+    A +   RG
Sbjct: 282 ---DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338

Query: 491 QIYCLFGQYEEALRNLDKTIALNP 514
              CL G++ EAL +L K+I L+P
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDP 362

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 448 KYGNLENESGQKHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
               +    G    A     KA     E  +  P  A +     ++Y   G Y+EAL  L
Sbjct: 10  NLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 507 DKTIALNPN 515
           +K +AL   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 137 NAHIKRAVVHLH------AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
            A    A+V         A     KA     E  +  P  A +     ++Y   G Y+EA
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 191 LRNLDKTIALNPN 203
           L  L+K +AL   
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---GNVDEAIKLIEKAISIDKSCMF 315
           +DF  A + + ++I +DP NA LY  RA    QA    GN  EA+    KAI +D S   
Sbjct: 16  DDFALAVDLYTQAIDLDPNNAELYADRA----QANIKLGNFTEAVADANKAIELDPSLAK 71

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
           AY   GT  ++    + A     K   LA  ++
Sbjct: 72  AYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	551
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG0547|consensus	606		100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG2002|consensus	1018		100.0
KOG0547|consensus	606		100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG2002|consensus	1018		99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG1126|consensus	638		99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG1155|consensus	559		99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG1126|consensus	638		99.96
KOG0624|consensus	504		99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
KOG1173|consensus	611		99.95
KOG0548|consensus	539		99.95
KOG2076|consensus	895		99.94
KOG1155|consensus	559		99.94
PRK14574	822	hmsH outer membrane protein; Provisional	99.94
KOG0548|consensus	539		99.94
KOG0624|consensus	504		99.93
KOG2003|consensus	840		99.93
KOG0495|consensus	913		99.92
KOG1173|consensus	611		99.92
KOG0495|consensus	913		99.92
KOG2076|consensus	895		99.92
KOG2003|consensus	840		99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.9
KOG1174|consensus	564		99.9
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.9
PRK12370	553	invasion protein regulator; Provisional	99.9
KOG4162|consensus	799		99.9
KOG1156|consensus	700		99.89
KOG0550|consensus	486		99.89
KOG4162|consensus	799		99.89
KOG1129|consensus	478		99.88
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.88
PRK12370	553	invasion protein regulator; Provisional	99.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.88
KOG1125|consensus	579		99.88
KOG1129|consensus	478		99.88
KOG1174|consensus	564		99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
KOG0550|consensus	486		99.86
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.85
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.85
KOG1125|consensus	579		99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
KOG1127|consensus	1238		99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.83
PLN03077	857	Protein ECB2; Provisional	99.82
PLN02789	320	farnesyltranstransferase	99.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.82
KOG1156|consensus	700		99.81
PLN02789	320	farnesyltranstransferase	99.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.8
KOG1127|consensus	1238		99.8
PLN03077	857	Protein ECB2; Provisional	99.78
KOG1840|consensus	508		99.77
KOG2376|consensus	652		99.76
KOG1840|consensus	508		99.75
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.75
KOG1915|consensus	677		99.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.73
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.7
KOG3785|consensus	557		99.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.66
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.65
KOG1915|consensus	677		99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.63
KOG3785|consensus	557		99.62
KOG3060|consensus	289		99.62
KOG3060|consensus	289		99.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.61
KOG1130|consensus	639		99.59
KOG4340|consensus	459		99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.56
KOG2376|consensus	652		99.56
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
KOG1128|consensus	777		99.51
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.5
KOG1130|consensus	639		99.48
PRK04841	903	transcriptional regulator MalT; Provisional	99.48
KOG1128|consensus	777		99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
PRK04841	903	transcriptional regulator MalT; Provisional	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
KOG0553|consensus	304		99.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.43
KOG4340|consensus	459		99.42
KOG0553|consensus	304		99.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.41
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.37
KOG2047|consensus	835		99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.35
KOG2047|consensus	835		99.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.34
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.29
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.28
KOG1941|consensus	518		99.26
KOG2053|consensus	932		99.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.23
PF13512	142	TPR_18: Tetratricopeptide repeat	99.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.2
KOG3081|consensus	299		99.18
PRK11906	458	transcriptional regulator; Provisional	99.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.16
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
PRK10803	263	tol-pal system protein YbgF; Provisional	99.15
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.14
KOG4648|consensus	536		99.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.08
PRK11906	458	transcriptional regulator; Provisional	99.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.06
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
KOG1070|consensus	1710		99.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.04
KOG0543|consensus	397		99.04
KOG0543|consensus	397		99.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.01
KOG4648|consensus	536		99.01
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.01
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.0
PRK15331	165	chaperone protein SicA; Provisional	99.0
KOG1941|consensus	518		99.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.93
KOG1070|consensus	1710		98.93
PRK10803	263	tol-pal system protein YbgF; Provisional	98.93
KOG3081|consensus	299		98.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.87
KOG4234|consensus	271		98.86
PF12688	120	TPR_5: Tetratrico peptide repeat	98.86
PF13371	73	TPR_9: Tetratricopeptide repeat	98.85
KOG2053|consensus	932		98.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.81
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.8
PF12688	120	TPR_5: Tetratrico peptide repeat	98.78
PF13512	142	TPR_18: Tetratricopeptide repeat	98.78
KOG2471|consensus	696		98.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.73
KOG4555|consensus	175		98.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.71
KOG3617|consensus	1416		98.7
KOG4234|consensus	271		98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
KOG2300|consensus	629		98.66
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.65
KOG2796|consensus	366		98.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.52
PF13428	44	TPR_14: Tetratricopeptide repeat	98.51
KOG1586|consensus	288		98.49
KOG1585|consensus	308		98.48
KOG2796|consensus	366		98.48
KOG3617|consensus	1416		98.48
KOG2471|consensus	696		98.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.43
KOG1914|consensus	656		98.43
KOG4555|consensus	175		98.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.36
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.33
PF13431	34	TPR_17: Tetratricopeptide repeat	98.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.33
KOG1585|consensus	308		98.31
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.31
KOG1586|consensus	288		98.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.27
KOG2610|consensus	491		98.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.22
KOG4642|consensus	284		98.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.16
KOG4642|consensus	284		98.16
KOG4507|consensus	886		98.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
KOG0530|consensus	318		98.13
PF13428	44	TPR_14: Tetratricopeptide repeat	98.06
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.05
KOG2300|consensus	629		98.04
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.02
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.01
KOG3616|consensus	1636		98.01
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.0
KOG0545|consensus	329		98.0
KOG0376|consensus	476		98.0
KOG2610|consensus	491		97.99
PF13431	34	TPR_17: Tetratricopeptide repeat	97.98
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.96
KOG0551|consensus	390		97.94
KOG3616|consensus	1636		97.93
KOG0376|consensus	476		97.92
KOG0551|consensus	390		97.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.9
KOG0545|consensus	329		97.89
KOG0530|consensus	318		97.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
KOG1550|consensus	552		97.79
KOG1550|consensus	552		97.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.78
KOG1258|consensus	577		97.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.75
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.69
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.66
KOG1914|consensus	656		97.62
KOG4507|consensus	886		97.54
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.53
KOG1308|consensus	377		97.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.5
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.49
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.49
KOG0985|consensus	1666		97.49
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.49
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.42
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.41
KOG3783|consensus	546		97.35
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.32
KOG1308|consensus	377		97.3
KOG1258|consensus	577		97.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.27
KOG3824|consensus	472		97.23
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.19
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.17
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.16
KOG0985|consensus	1666		97.09
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.08
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.05
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.04
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.94
KOG2041|consensus	1189		96.91
KOG1464|consensus	440		96.85
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.81
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.69
PRK10941	269	hypothetical protein; Provisional	96.68
KOG0890|consensus	2382		96.65
PRK10941	269	hypothetical protein; Provisional	96.62
KOG2396|consensus	568		96.62
KOG1464|consensus	440		96.61
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.57
KOG0890|consensus	2382		96.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.47
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.45
KOG2396|consensus	568		96.32
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.2
KOG3824|consensus	472		96.17
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.07
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.05
KOG3364|consensus	149		96.04
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.01
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.0
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.99
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.97
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.85
KOG3364|consensus	149		95.76
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.63
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.51
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.31
KOG2422|consensus	665		95.24
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.0
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.98
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.97
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.97
KOG1310|consensus	758		94.94
KOG1839|consensus	1236		94.89
KOG2422|consensus	665		94.89
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.83
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.79
KOG1310|consensus	758		94.66
KOG2581|consensus	493		94.61
KOG2041|consensus	1189		94.52
KOG4814|consensus	872		94.52
COG2912	269	Uncharacterized conserved protein [Function unknow	94.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.38
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.3
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.24
KOG1463|consensus	411		94.22
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.13
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.06
KOG4814|consensus	872		93.9
KOG0128|consensus	881		93.85
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.68
KOG0529|consensus	421		93.61
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.52
KOG1538|consensus	1081		93.46
KOG3807|consensus	556		93.17
KOG1538|consensus	1081		93.14
KOG0529|consensus	421		93.12
COG2912	269	Uncharacterized conserved protein [Function unknow	93.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.86
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.56
KOG3783|consensus	546		92.09
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.9
KOG1463|consensus	411		91.66
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.65
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.58
COG5159	421	RPN6 26S proteasome regulatory complex component [	91.38
KOG3807|consensus	556		91.33
KOG1839|consensus	1236		91.33
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.96
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.56
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.37
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.45
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.41
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	89.28
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	89.24
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.15
PRK11619	644	lytic murein transglycosylase; Provisional	88.86
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.59
KOG2114|consensus	933		88.44
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.94
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.7
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.13
KOG0546|consensus	372		86.84
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.88
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.88
PF12854	34	PPR_1: PPR repeat	85.65
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.18
KOG0128|consensus	881		85.15
PHA02537	230	M terminase endonuclease subunit; Provisional	84.67
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	84.48
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.24
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.05
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.9
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	83.84
COG3947	361	Response regulator containing CheY-like receiver a	83.78
PF12854	34	PPR_1: PPR repeat	83.68
KOG0686|consensus	466		82.62
KOG2581|consensus	493		81.53
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.74
KOG2063|consensus	877		80.73
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	80.42
COG3947	361	Response regulator containing CheY-like receiver a	80.37

>KOG4626|consensus

Probab=100.00  E-value=3.3e-46  Score=338.37  Aligned_cols=387  Identities=17%  Similarity=0.173  Sum_probs=347.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      -.+.+-..|..+-..|++++|+..|+.+++..|+   ..++|.++|.++...|+.+.|..+|..+++++|+...    +.
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~---fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c----a~  187 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK---FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC----AR  187 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch---hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh----hh
Confidence            4677788999999999999999999999999999   9999999999999999999999999999999998744    44


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|..+...| +..+|..+|.++++..|..+.+|.++|.++..+|+...|+..|+++++++|+..++++++|.++-.. 
T Consensus       188 s~lgnLlka~G-rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-  265 (966)
T KOG4626|consen  188 SDLGNLLKAEG-RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-  265 (966)
T ss_pred             cchhHHHHhhc-ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-
Confidence            55999999999 9999999999999999999999999999999999999999999999999999999999999777777 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                           +.++.|+.+|.+++...|++..++.++|.+|..+|..+-|+..|+++++..|+.+.++.++|.. +...|+..+|
T Consensus       266 -----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA-Lkd~G~V~ea  339 (966)
T KOG4626|consen  266 -----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA-LKDKGSVTEA  339 (966)
T ss_pred             -----hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH-HHhccchHHH
Confidence                 9999999999999999999999999999999999999999999999999999999999999999 5559999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR  379 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (551)
                      ..+|.+++...|+.+.+..+||.++..+|.+++|...|.++++..|........++....                    
T Consensus       340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k--------------------  399 (966)
T KOG4626|consen  340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK--------------------  399 (966)
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH--------------------
Confidence            999999999999999999999999999999999999999999999987776555443300                    


Q ss_pred             hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-
Q psy12713        380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-  458 (551)
Q Consensus       380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (551)
                                                         ..+.+.+++             ..+..++.+.+.+...+...|. 
T Consensus       400 -----------------------------------qqgnl~~Ai-------------~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  400 -----------------------------------QQGNLDDAI-------------MCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             -----------------------------------hcccHHHHH-------------HHHHHHHhcCchHHHHHHhcchH
Confidence                                               011111111             1222344455666666666666 


Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      +...|+.+.|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.+++++|++++++.++..++.-
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999988765

>KOG4626|consensus

Probab=100.00  E-value=4.7e-45  Score=330.88  Aligned_cols=399  Identities=21%  Similarity=0.251  Sum_probs=352.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-------------------------------hhHHHHHHHHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-------------------------------HTKALARLLRATVYIF  110 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-------------------------------~~~~~~~~~la~~~~~  110 (551)
                      ...+.+|...++.|+|.+|.+.+..+...+|..                               +...+++.++|.++..
T Consensus        49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE  128 (966)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence            447889999999999999999998887766643                               3467889999999999


Q ss_pred             hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH
Q psy12713        111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA  190 (551)
Q Consensus       111 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  190 (551)
                      .|+++.|+..|+.++++.|+.    +.+|.++|.++...| +.+.|..+|..+++++|+...+...+|.++..+|+.++|
T Consensus       129 rg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea  203 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA  203 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence            999999999999999999988    668888999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      ..+|.++++..|....+|.++|.++...      |+...|+..|+++++++|...++|+++|.+|...+.++.|+.+|.+
T Consensus       204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~------Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  204 KACYLKAIETQPCFAIAWSNLGCVFNAQ------GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             HHHHHHHHhhCCceeeeehhcchHHhhc------chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            9999999999999999999999666655      9999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++...|++..++.++|.+|+. +|..+-|+..|+++++..|+.+.++.++|.++...|+..+|+.+|.+++.+.|++.+.
T Consensus       278 Al~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada  356 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA  356 (966)
T ss_pred             HHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence            999999999999999999888 9999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      ...++.........+                                                                 
T Consensus       357 m~NLgni~~E~~~~e-----------------------------------------------------------------  371 (966)
T KOG4626|consen  357 MNNLGNIYREQGKIE-----------------------------------------------------------------  371 (966)
T ss_pred             HHHHHHHHHHhccch-----------------------------------------------------------------
Confidence            666554421111111                                                                 


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHH
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT  509 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  509 (551)
                         .+..-+..+++..+.+....+..+. +.+.|++++|+.+|++++.+.|..++++.++|..|..+|+...|+.+|.+|
T Consensus       372 ---~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  372 ---EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             ---HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence               1111112233333445555555555 888999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713        510 IALNPNFHVARAQRHFVWTSTLAELMAFSDE  540 (551)
Q Consensus       510 l~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~  540 (551)
                      +.++|...+++.+||.+|...|+-.+|+...
T Consensus       449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             HhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            9999999999999999999999998888643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=6e-36  Score=301.89  Aligned_cols=382  Identities=20%  Similarity=0.216  Sum_probs=307.5

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      +..+..+|..++..|+|++|+..|++++...|+    +..+..+|.||..+|++++|+..++++++++|++    ..+++
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~  198 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALN  198 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHH
Confidence            456788999999999999999999999999995    5689999999999999999999999999999988    45777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------------CChhHHHHHHHH----------
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDP------------------------------NVADSYYQRGQI----------  180 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~----------  180 (551)
                      .+|.++..+| ++++|+..+..+...++                              .+...+..++..          
T Consensus       199 ~~a~a~~~lg-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (615)
T TIGR00990       199 RRANAYDGLG-KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP  277 (615)
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch
Confidence            8999999999 99999987765543322                              211111111111          


Q ss_pred             -----------------------H---HHhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        181 -----------------------Y---CLFGQYEEALRNLDKTIAL---NPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       181 -----------------------~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                                             .   ...+.+++|+..|++++..   .|....++..+|.++...      |++++|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~------g~~~eA~  351 (615)
T TIGR00990       278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK------GKHLEAL  351 (615)
T ss_pred             hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc------CCHHHHH
Confidence                                   1   1235799999999999976   477778889999888777      9999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      ..+++++..+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.+++. .|++++|+.+|++++..+|
T Consensus       352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCc
Confidence            999999999999999999999999999999999999999999999999999999999887 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI  391 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  391 (551)
                      ++..++..+|.++..+|++++|+..|++++...|+++.++..++......                       +....++
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-----------------------g~~~~A~  487 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-----------------------NKFDEAI  487 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------------------cCHHHHH
Confidence            99999999999999999999999999999999999988776665441111                       1122222


Q ss_pred             HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHH
Q psy12713        392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFA  470 (551)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~  470 (551)
                      ..+.+...                                  ..|.......    ....+...+.. +...|++++|+.
T Consensus       488 ~~~~~Al~----------------------------------l~p~~~~~~~----~~~~l~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       488 EKFDTAIE----------------------------------LEKETKPMYM----NVLPLINKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHHh----------------------------------cCCccccccc----cHHHHHHHHHHHHHHhhhHHHHHH
Confidence            22222111                                  0111000000    00011122222 233589999999


Q ss_pred             hhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHH
Q psy12713        471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  519 (551)
Q Consensus       471 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  519 (551)
                      .++++++++|++..++..+|.++..+|++++|+.+|++++++.+.....
T Consensus       530 ~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999999999999999999999999999999976653

>KOG0547|consensus

Probab=100.00  E-value=2.6e-34  Score=254.36  Aligned_cols=350  Identities=35%  Similarity=0.525  Sum_probs=313.5

Q ss_pred             chhHHHHHHHHHHh-hCCCCCCcHHHHHHHHhhCCCCCCCCCCCCCCcccccCCCCCCcchHHHHHHHHHHHhhh---cH
Q psy12713          2 FMDRGAQHAKEEIS-KRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHE---DY   77 (551)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~g---~~   77 (551)
                      +|.++...+++.++ ++++.+||++|+.+||++|..++ .+....+           .+..++....+...+..+   .|
T Consensus       228 Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-~~~~~~~-----------~~ksDa~l~~~l~~l~~~~~e~Y  295 (606)
T KOG0547|consen  228 LKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-KPLFDNK-----------SDKSDAALAEALEALEKGLEEGY  295 (606)
T ss_pred             HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc-cccccCC-----------CccchhhHHHHHHHHHhhCchhH
Confidence            67888899999999 79999999999999999999998 3332211           223455556666666666   78


Q ss_pred             HHHHHHHHHHhhcCCCc----------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713         78 LTAIRHCTEEIESTSSN----------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL  147 (551)
Q Consensus        78 ~~A~~~~~~~l~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  147 (551)
                      ..|...+.+.......+          .+.+.++...|..++-.|+.-.|...|+.+++++|.++..    |+.+|.+|.
T Consensus       296 ~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~  371 (606)
T KOG0547|consen  296 LKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYA  371 (606)
T ss_pred             HHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHh
Confidence            88888887765432111          3348899999999999999999999999999999988654    566999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ..+ +..+....|.++..++|.++++|+.+|++++-.+++++|+..|++++.++|.+..++.+++.+.|+.      +++
T Consensus       372 d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~------~k~  444 (606)
T KOG0547|consen  372 DEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ------HKI  444 (606)
T ss_pred             hhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH------HHH
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999      999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNVDEAIK  301 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~A~~  301 (551)
                      +++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|.      ++..+.+.|.+.++..+++..|+.
T Consensus       445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~  524 (606)
T KOG0547|consen  445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN  524 (606)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999      777888888888888899999999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK  374 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (551)
                      +++++++++|.+..++..||.+..++|+.++|+++|+++..+..+..+..+.+..++...++..+.+.++...
T Consensus       525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAAraq~~vtkK~~~~~  597 (606)
T KOG0547|consen  525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAARAQIAVTKKYGLTL  597 (606)
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHhcccH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888877653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.4e-34  Score=305.85  Aligned_cols=429  Identities=16%  Similarity=0.143  Sum_probs=244.9

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      +..+...|..+...|++++|+..|+++++.+|.   +..++..+|.++...|++++|+..+++++...|.+.    .++.
T Consensus       465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~  537 (899)
T TIGR02917       465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL----RAIL  537 (899)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHH
Confidence            344555555555555555555555555555555   555555555555555555555555555555555442    2334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV  220 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  220 (551)
                      .++.++...| ++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.+...+..++.++...  
T Consensus       538 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  614 (899)
T TIGR02917       538 ALAGLYLRTG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA--  614 (899)
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--
Confidence            4555555555 5555555555555555555555555555555555555555555555555555555555555444444  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                          |++++|+..++++++..|.++.++..+|.++...|++++|+..|++++..+|++...+..++.++.. .|++++|+
T Consensus       615 ----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  689 (899)
T TIGR02917       615 ----GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-AKRTESAK  689 (899)
T ss_pred             ----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence                5555555555555555555555555555555555555555555555555555555555555555444 55555555


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcch
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRS  380 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (551)
                      ..++.+.+..|.++..+..+|.++...|++++|+..|++++...|++... ..++..  ..                   
T Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~--~~-------------------  747 (899)
T TIGR02917       690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRA--LL-------------------  747 (899)
T ss_pred             HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH-HHHHHH--HH-------------------
Confidence            55555555555555555556666666666666666666665555554211 111100  00                   


Q ss_pred             hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-h
Q psy12713        381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-K  459 (551)
Q Consensus       381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  459 (551)
                        ..+....+...+.+......           .+...+......+...+....+.......+...+.....+...+. +
T Consensus       748 --~~g~~~~A~~~~~~~l~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  814 (899)
T TIGR02917       748 --ASGNTAEAVKTLEAWLKTHP-----------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY  814 (899)
T ss_pred             --HCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              00111112111111100000           000111111222222222222222223333333333333333333 6


Q ss_pred             hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhh
Q psy12713        460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSD  539 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~  539 (551)
                      ...|+ .+|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|+..+|..-
T Consensus       815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  893 (899)
T TIGR02917       815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE  893 (899)
T ss_pred             HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            66788 88999999999999999999999999999999999999999999999999999999999999999998888754


Q ss_pred             h
Q psy12713        540 E  540 (551)
Q Consensus       540 ~  540 (551)
                      .
T Consensus       894 ~  894 (899)
T TIGR02917       894 L  894 (899)
T ss_pred             H
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.9e-33  Score=299.72  Aligned_cols=456  Identities=15%  Similarity=0.142  Sum_probs=251.5

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH---
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK---  135 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---  135 (551)
                      .++..+...|..+...|++++|+..|++++...|.   +..++..+|.++...|++++|+..+++++...|+.....   
T Consensus       361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  437 (899)
T TIGR02917       361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL  437 (899)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence            35677888899999999999999999999999888   788888899999999999999999988888877553321   


Q ss_pred             ---------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713        136 ---------------------------VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE  188 (551)
Q Consensus       136 ---------------------------~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  188 (551)
                                                 ...+..+|.++...| ++++|+..|+++++.+|++..++..+|.++...|+++
T Consensus       438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  516 (899)
T TIGR02917       438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD  516 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence                                       123344555555555 5555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF  268 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  268 (551)
                      +|+..+++++...|.+..++..++.++...      |++++|+..+++++..+|.+...+..++.++...|++++|+..+
T Consensus       517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  590 (899)
T TIGR02917       517 DAIQRFEKVLTIDPKNLRAILALAGLYLRT------GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL  590 (899)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            555555555555555555555555444433      55566666666665555655555566666666666666666666


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ++++...|.++..+..+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++.
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       591 NEAADAAPDSPEAWLMLGRAQLA-AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            66666666666666666666554 66666666666666666666666666666666666666666666666666666655


Q ss_pred             HHHHHHhHHHHHHHHH----HHHHHhccccCCCcch-------hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcc
Q psy12713        349 ELSHIYSLRDAAIAQM----KVCERYNIKKKVSPRS-------QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA  417 (551)
Q Consensus       349 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (551)
                      ..+..+..........    ...+.+..........       ....+....++..+.........            ..
T Consensus       670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~  737 (899)
T TIGR02917       670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------------SQ  737 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------ch
Confidence            5443332221111000    0000000000000000       00011112222222211110000            00


Q ss_pred             hhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh
Q psy12713        418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  496 (551)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  496 (551)
                      .+......+...+....+.......+...+.....+...+. +...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            01111111111111111111112222222222222222222 55566666666666666666666666666666666666


Q ss_pred             cCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        497 GQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       497 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      |+ .+|+..+++++++.|+++..+..+|.++...|+..+|..
T Consensus       818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  858 (899)
T TIGR02917       818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP  858 (899)
T ss_pred             Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            66 666666666666666666666666666666666655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.5e-33  Score=300.65  Aligned_cols=398  Identities=12%  Similarity=0.049  Sum_probs=288.9

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH----------
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK----------  135 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------  135 (551)
                      .+|..++..|++++|+..|+++++.+|+   ++.++..+|.++...|++++|+..|+++++.+|++....          
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~  350 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR  350 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence            4588999999999999999999999998   899999999999999999999999999999999875421          


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ......+|.++...| ++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus       351 ~~~~~~~g~~~~~~g-~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        351 YWLLIQQGDAALKAN-NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            123345688899999 9999999999999999999999999999999999999999999999999999988887776554


Q ss_pred             HHh------------------------------------hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713        216 HKM------------------------------------IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE  259 (551)
Q Consensus       216 ~~~------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  259 (551)
                      ...                                    ..+...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus       430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            210                                    12234577788888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHhCC
Q psy12713        260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----------MFAYETLGTIEVQRGR  329 (551)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~  329 (551)
                      ++++|+..++++++.+|+++..++.++..+.. .+++++|+..++++.....+.          ......++..+...|+
T Consensus       510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~-~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSG-SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            88888888888888888887777777765443 677777777666532211000          0112234444455555


Q ss_pred             HHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713        330 LEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG  409 (551)
Q Consensus       330 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  409 (551)
                      +++|+..++    ..|.++.....++...  .                     ..+....++..+.+.            
T Consensus       589 ~~eA~~~l~----~~p~~~~~~~~La~~~--~---------------------~~g~~~~A~~~y~~a------------  629 (1157)
T PRK11447        589 EAEAEALLR----QQPPSTRIDLTLADWA--Q---------------------QRGDYAAARAAYQRV------------  629 (1157)
T ss_pred             HHHHHHHHH----hCCCCchHHHHHHHHH--H---------------------HcCCHHHHHHHHHHH------------
Confidence            555555444    2444444333222110  0                     001111111111110            


Q ss_pred             CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhh
Q psy12713        410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQR  489 (551)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  489 (551)
                                            +...|.++..          ....+..+...|++++|+..++++++..|+++.++..+
T Consensus       630 ----------------------l~~~P~~~~a----------~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l  677 (1157)
T PRK11447        630 ----------------------LTREPGNADA----------RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV  677 (1157)
T ss_pred             ----------------------HHhCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence                                  0011111111          11222235667999999999999999999999999999


Q ss_pred             hhHHHHhcCHHHHHHHHHHHhhcCCchH------HHHHHHHHHHHHhhhhhhhhhh
Q psy12713        490 GQIYCLFGQYEEALRNLDKTIALNPNFH------VARAQRHFVWTSTLAELMAFSD  539 (551)
Q Consensus       490 g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~~  539 (551)
                      |.++...|++++|+..|++++...|+++      .++..+|.++...|+..+|+..
T Consensus       678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~  733 (1157)
T PRK11447        678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET  733 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999877654      4566778889888888877765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=5.6e-33  Score=278.81  Aligned_cols=346  Identities=11%  Similarity=0.070  Sum_probs=311.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +......-+..++..|++++|...++.++...|.   ++.+++.+|.+....|++++|+..+++++..+|+++.    ++
T Consensus        41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~  113 (656)
T PRK15174         41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DV  113 (656)
T ss_pred             cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HH
Confidence            4555667788899999999999999999999999   9999999999999999999999999999999999955    56


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++...| ++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|++...+...+ .+... 
T Consensus       114 ~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~-  190 (656)
T PRK15174        114 LLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNK-  190 (656)
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHc-
Confidence            66999999999 9999999999999999999999999999999999999999999999999999988776543 24444 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                           |++++|+..+++++..+|. .......++.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++
T Consensus       191 -----g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~e  264 (656)
T PRK15174        191 -----SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSRE  264 (656)
T ss_pred             -----CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchh
Confidence                 9999999999999998763 344556678899999999999999999999999999999999999877 999986


Q ss_pred             ----HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q psy12713        299 ----AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK  374 (551)
Q Consensus       299 ----A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (551)
                          |+..++++++.+|+++.++..+|.++...|++++|+..+++++.+.|+++.+...++.                  
T Consensus       265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~------------------  326 (656)
T PRK15174        265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR------------------  326 (656)
T ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------------
Confidence                8999999999999999999999999999999999999999999999998775433321                  


Q ss_pred             CCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchh
Q psy12713        375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLEN  454 (551)
Q Consensus       375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (551)
                                                                                                      
T Consensus       327 --------------------------------------------------------------------------------  326 (656)
T PRK15174        327 --------------------------------------------------------------------------------  326 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHH
Q psy12713        455 ESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  522 (551)
Q Consensus       455 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  522 (551)
                         .+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++....+.
T Consensus       327 ---~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~  391 (656)
T PRK15174        327 ---ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE  391 (656)
T ss_pred             ---HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence               14455899999999999999999998888888999999999999999999999999987654443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.2e-32  Score=278.04  Aligned_cols=368  Identities=18%  Similarity=0.179  Sum_probs=290.5

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+..+..+|..++..|++++|+..|++++...|+ +    ..+.++|.+|..+| ++++|+..++++++++|++..+++.
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~  199 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNR  199 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            3556789999999999999999999999999985 2    35677999999999 9999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH------------------------------HHHHHHHHHHH---------
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHV------------------------------ARAQRHFVVHK---------  217 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~------------------------------~~~~~~~~~~~---------  217 (551)
                      +|.+|..+|++++|+..+..+...++....                              .+..++..+..         
T Consensus       200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (615)
T TIGR00990       200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG  279 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence            999999999999999988776655432211                              11111111100         


Q ss_pred             -----------------h----hcCCChhHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713        218 -----------------M----IVPGDRERVEQSLKEFRNFVDTH---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR  273 (551)
Q Consensus       218 -----------------~----~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  273 (551)
                                       .    .-....+++++|+..|++++...   |....++..+|.++...|++++|+..|+++++
T Consensus       280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~  359 (615)
T TIGR00990       280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE  359 (615)
T ss_pred             hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                             0    00012368999999999999864   77788999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       274 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      .+|++...+..+|.++.. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|++...+..
T Consensus       360 l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~  438 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ  438 (615)
T ss_pred             cCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence            999999999999999877 9999999999999999999999999999999999999999999999999999998877655


Q ss_pred             HhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCcc
Q psy12713        354 YSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE  433 (551)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (551)
                      ++.....                       .+....++..+.+..                                  .
T Consensus       439 la~~~~~-----------------------~g~~~eA~~~~~~al----------------------------------~  461 (615)
T TIGR00990       439 LGVTQYK-----------------------EGSIASSMATFRRCK----------------------------------K  461 (615)
T ss_pred             HHHHHHH-----------------------CCCHHHHHHHHHHHH----------------------------------H
Confidence            4433110                       011122222222110                                  0


Q ss_pred             ccCCCcchhhhhhhhhccchhhhc-hhhhhcChhHHHHhhHHhhccCCCchHHH------hhhhhHH-HHhcCHHHHHHH
Q psy12713        434 IIPGDPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDEAEKVDPNVADSY------YQRGQIY-CLFGQYEEALRN  505 (551)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~-~~~g~~~~A~~~  505 (551)
                      ..|           .....+...+ .+...|++++|+..|+++++++|++...+      ...+.++ ...|++++|+..
T Consensus       462 ~~P-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~  530 (615)
T TIGR00990       462 NFP-----------EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL  530 (615)
T ss_pred             hCC-----------CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            111           1112222233 36778999999999999999998754332      3333334 447999999999


Q ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhh
Q psy12713        506 LDKTIALNPNFHVARAQRHFVWTSTLAELMAFSD  539 (551)
Q Consensus       506 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~  539 (551)
                      +++++.++|++..++..+|.++...|+..+|+..
T Consensus       531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~  564 (615)
T TIGR00990       531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKL  564 (615)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999999999999999999888753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.3e-32  Score=290.56  Aligned_cols=426  Identities=15%  Similarity=0.148  Sum_probs=321.5

Q ss_pred             hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC---------------------
Q psy12713         73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD---------------------  131 (551)
Q Consensus        73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------  131 (551)
                      ..|++++|+..++++++.+|.   ++.++..+|.++...|++++|+..+++++...+..                     
T Consensus       159 ~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~  235 (1157)
T PRK11447        159 LPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASV  235 (1157)
T ss_pred             CCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhH
Confidence            458999999999999999998   89999999999999999999999999986643211                     


Q ss_pred             -------------chhH-HH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713        132 -------------PKIK-VN---------------AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC  182 (551)
Q Consensus       132 -------------~~~~-~~---------------~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  182 (551)
                                   .... ..               ....+|.++...| ++++|+..|+++++.+|+++.++..+|.++.
T Consensus       236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g-~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~  314 (1157)
T PRK11447        236 AALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG-QGGKAIPELQQAVRANPKDSEALGALGQAYS  314 (1157)
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                         1000 00               0013477888899 9999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhcCCCCHHH--H------------HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        183 LFGQYEEALRNLDKTIALNPNFHVA--R------------AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       183 ~~~~~~~A~~~~~~~l~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                      ..|++++|+..|+++++.+|++...  +            ...+.++      ...|++++|+..|++++..+|+++.++
T Consensus       315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~------~~~g~~~eA~~~~~~Al~~~P~~~~a~  388 (1157)
T PRK11447        315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA------LKANNLAQAERLYQQARQVDNTDSYAV  388 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999999976532  1            1223333      345999999999999999999999999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---------------------------------------
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM---------------------------------------  289 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------------  289 (551)
                      ..+|.++...|++++|+..|+++++.+|++..++..++.++                                       
T Consensus       389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a  468 (1157)
T PRK11447        389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA  468 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999987766555442                                       


Q ss_pred             ---HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHH-
Q psy12713        290 ---LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK-  365 (551)
Q Consensus       290 ---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-  365 (551)
                         .. .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++.....++.......... 
T Consensus       469 ~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~  547 (1157)
T PRK11447        469 EALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA  547 (1157)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence               23 7999999999999999999999999999999999999999999999999999998876554433211000000 


Q ss_pred             HHHHhccccC--CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713        366 VCERYNIKKK--VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI  443 (551)
Q Consensus       366 ~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (551)
                      ....+...+.  .......+...... ...+..             .......+++.++...+.      ..|.++..  
T Consensus       548 Al~~l~~l~~~~~~~~~~~l~~~l~~-~~~l~~-------------a~~l~~~G~~~eA~~~l~------~~p~~~~~--  605 (1157)
T PRK11447        548 ALAHLNTLPRAQWNSNIQELAQRLQS-DQVLET-------------ANRLRDSGKEAEAEALLR------QQPPSTRI--  605 (1157)
T ss_pred             HHHHHHhCCchhcChhHHHHHHHHhh-hHHHHH-------------HHHHHHCCCHHHHHHHHH------hCCCCchH--
Confidence            0000100000  00000000000000 000000             001112223333333222      12222221  


Q ss_pred             hhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713        444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  523 (551)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  523 (551)
                              ....+..+...|++++|+..|+++++.+|++++++..+|.++...|++++|++.++++++..|+++.++..+
T Consensus       606 --------~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l  677 (1157)
T PRK11447        606 --------DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV  677 (1157)
T ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence                    123344477889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhh
Q psy12713        524 HFVWTSTLAELMAFSD  539 (551)
Q Consensus       524 ~~~~~~~~~~~~a~~~  539 (551)
                      |.++...|+..+|...
T Consensus       678 a~~~~~~g~~~eA~~~  693 (1157)
T PRK11447        678 ALAWAALGDTAAAQRT  693 (1157)
T ss_pred             HHHHHhCCCHHHHHHH
Confidence            9999999988877753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=8.6e-31  Score=263.11  Aligned_cols=330  Identities=12%  Similarity=0.021  Sum_probs=295.2

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      +.......+..+...|++++|+..++.++...|+++.    ++..+|.+....| ++++|+..+++++..+|+++.++..
T Consensus        41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~  115 (656)
T PRK15174         41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLL  115 (656)
T ss_pred             cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4445666778889999999999999999999999854    5666999999999 9999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +|.++...|++++|+..+++++.++|++..++..++.++...      |++++|+..+++++...|+++.++..++ .+.
T Consensus       116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~  188 (656)
T PRK15174        116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRGDMIATCL-SFL  188 (656)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence            999999999999999999999999999999999999777777      9999999999999999999998887664 488


Q ss_pred             hccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHH---
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE---  332 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---  332 (551)
                      ..|++++|+..+++++..+|.. ......++.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++   
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~  267 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA-VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL  267 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence            9999999999999999987643 4444556777666 9999999999999999999999999999999999999986   


Q ss_pred             -HHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCc
Q psy12713        333 -AVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKT  411 (551)
Q Consensus       333 -A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  411 (551)
                       |+..|++++..+|++..++..++.                                                       
T Consensus       268 ~A~~~~~~Al~l~P~~~~a~~~lg~-------------------------------------------------------  292 (656)
T PRK15174        268 QAAEHWRHALQFNSDNVRIVTLYAD-------------------------------------------------------  292 (656)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHH-------------------------------------------------------
Confidence             899999999999998765443321                                                       


Q ss_pred             cccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhh
Q psy12713        412 VVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ  491 (551)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  491 (551)
                                                                    .+...|++++|+..++++++.+|+++.++..+|.
T Consensus       293 ----------------------------------------------~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        293 ----------------------------------------------ALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             ----------------------------------------------HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                                          2455689999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713        492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE  540 (551)
Q Consensus       492 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~  540 (551)
                      ++...|++++|+..|++++..+|++..++..+|.++...|+..+|....
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999988888899999999888877643

>KOG2002|consensus

Probab=100.00  E-value=6.5e-31  Score=251.62  Aligned_cols=458  Identities=16%  Similarity=0.140  Sum_probs=297.5

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc----
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP----  132 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----  132 (551)
                      ..+++..++.+|...+..|+|..|+.+|+.++.++|.  ..++....+|.|++++|+.+.|+..|+++++++|.+.    
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv  237 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALV  237 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc--cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence            3458999999999999999999999999999999997  4667888899999999999999999999999887432    


Q ss_pred             ------------------------------------------------------------------hhHHHHHHHHHHHH
Q psy12713        133 ------------------------------------------------------------------KIKVNAHIKRAVVH  146 (551)
Q Consensus       133 ------------------------------------------------------------------~~~~~~~~~la~~~  146 (551)
                                                                                        .....+++++|.+|
T Consensus       238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~  317 (1018)
T KOG2002|consen  238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY  317 (1018)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence                                                                              11234678889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      ..+| ++++|..+|.++++.+|++ .-.++.+|++++..|+++.|+.+|+++++..|++......+|.+|....  ....
T Consensus       318 Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~--~~~~  394 (1018)
T KOG2002|consen  318 HAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA--KKQE  394 (1018)
T ss_pred             Hhhc-cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--hhhH
Confidence            9999 9999999999999998888 7788899999999999999999999999999999999888887765430  2233


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      ..+.|..+..++++..|.+.++|..++.++....-+. ++..|..++..     .+-.++.+.++|..++. .|++++|.
T Consensus       395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-~g~~~~A~  472 (1018)
T KOG2002|consen  395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFR-LGNIEKAL  472 (1018)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-hcChHHHH
Confidence            6688888888888888888888888887776654443 37777777643     23346677788888777 88888888


Q ss_pred             HHHHHHHhc-----CcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh-HH----HHHHHHHH
Q psy12713        301 KLIEKAISI-----DKSC-----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS-LR----DAAIAQMK  365 (551)
Q Consensus       301 ~~~~~~~~~-----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~----~~~~~~~~  365 (551)
                      ..|.+++..     +++.     ....+++|.++...++++.|.+.|..++...|+..+...-++ ..    ....+...
T Consensus       473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~  552 (1018)
T KOG2002|consen  473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLL  552 (1018)
T ss_pred             HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHH
Confidence            888888765     2222     335778888888888888888888888888888776554443 11    00111111


Q ss_pred             HHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhh
Q psy12713        366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEE  445 (551)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (551)
                      +...+ ......+....+.+...........+.....                  ........       ..++-..+.+
T Consensus       553 lk~~l-~~d~~np~arsl~G~~~l~k~~~~~a~k~f~------------------~i~~~~~~-------~~D~YsliaL  606 (1018)
T KOG2002|consen  553 LKDAL-NIDSSNPNARSLLGNLHLKKSEWKPAKKKFE------------------TILKKTST-------KTDAYSLIAL  606 (1018)
T ss_pred             HHHHH-hcccCCcHHHHHHHHHHHhhhhhcccccHHH------------------HHHhhhcc-------CCchhHHHHh
Confidence            11111 1122222222333333222222222111000                  00000000       0000011111


Q ss_pred             hhhhcc-chhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713        446 SEKYGN-LENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  523 (551)
Q Consensus       446 ~~~~~~-~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  523 (551)
                      +..+.. +++.... -...+.+++|+..|.++++.+|.|..+-..+|.|+...|++.+|+..|.++.+--.++.++|.++
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl  686 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL  686 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence            110000 0000000 11234566666666666666666666666666666666666666666666666555666666666


Q ss_pred             HHHHHHhhhhhhhhhhhcccchhh
Q psy12713        524 HFVWTSTLAELMAFSDEFMIPKIT  547 (551)
Q Consensus       524 ~~~~~~~~~~~~a~~~~~~~~~~~  547 (551)
                      |.+|..+|++..|+.-.-.+++..
T Consensus       687 ah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  687 AHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666665444444433

>KOG0547|consensus

Probab=100.00  E-value=6.4e-31  Score=233.00  Aligned_cols=348  Identities=23%  Similarity=0.284  Sum_probs=217.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      -+..+-.+|..+++.|+|++|+++|..+|+..|+   .+..+.+++-||...|+|++.++...++++++|+.    +.++
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y----~KAl  186 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY----VKAL  186 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH----HHHH
Confidence            4566778899999999999999999999999998   68899999999999999999999999999999987    6688


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH------------------HHhc--------------CCCC-----------------
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDE------------------AEKV--------------DPNV-----------------  170 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~------------------~~~~--------------~~~~-----------------  170 (551)
                      +.++..+..+| ++++|+....-                  .++.              .|.-                 
T Consensus       187 ~RRA~A~E~lg-~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~  265 (606)
T KOG0547|consen  187 LRRASAHEQLG-KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP  265 (606)
T ss_pred             HHHHHHHHhhc-cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence            88999999999 88888744321                  1110              0100                 


Q ss_pred             ------------------------------------------------------------hhHHHHHHHHHHHhCCHHHH
Q psy12713        171 ------------------------------------------------------------ADSYYQRGQIYCLFGQYEEA  190 (551)
Q Consensus       171 ------------------------------------------------------------~~~~~~la~~~~~~~~~~~A  190 (551)
                                                                                  ..++...|..++-.|++-.|
T Consensus       266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a  345 (606)
T KOG0547|consen  266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA  345 (606)
T ss_pred             cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence                                                                        11223333444444444444


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      ...++.++.++|.+...++.++.++...      ++.++....|.++..++|.++++|+..|++++-.+++++|+..|++
T Consensus       346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~------~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K  419 (606)
T KOG0547|consen  346 QEDFDAAIKLDPAFNSLYIKRAAAYADE------NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK  419 (606)
T ss_pred             hhhHHHHHhcCcccchHHHHHHHHHhhh------hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444222222      4444444445555455555544444555544444455555555555


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++.++|++...+..++.+.++ +++++++...|+.++...|+.++++...|.++..++++++|++.|++++.+.|....+
T Consensus       420 ai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  420 AISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             HhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            555555444444444444444 4444445555555544445444444444555555555555555555544444442110


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      ..                                                                              
T Consensus       499 ~v------------------------------------------------------------------------------  500 (606)
T KOG0547|consen  499 IV------------------------------------------------------------------------------  500 (606)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  510 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  510 (551)
                                   ...+....   ....+.-.+++.+|+.+++++++++|..-.++..+|.+..++|+.++|++.|++++
T Consensus       501 -------------~~~plV~K---a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  501 -------------NAAPLVHK---ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             -------------cchhhhhh---hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                         00000000   00001112789999999999999999999999999999999999999999999999


Q ss_pred             hcCCch
Q psy12713        511 ALNPNF  516 (551)
Q Consensus       511 ~~~p~~  516 (551)
                      .+.-.-
T Consensus       565 ~lArt~  570 (606)
T KOG0547|consen  565 QLARTE  570 (606)
T ss_pred             HHHHhH
Confidence            886544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=7.7e-28  Score=247.20  Aligned_cols=403  Identities=11%  Similarity=0.016  Sum_probs=225.0

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV  145 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  145 (551)
                      .-..+....|++++|+..+.++....|.   ...++..+|.++...|++++|+..++++++.+|.++.    ++..++.+
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~   92 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHMQL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILT   92 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHH
Confidence            3345556677777777777777766665   6667777777777777777777777777777777744    33457777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      +...| ++++|+..+++++..+|+++. +..+|.++...|++++|+..++++++..|++..++..++.++...      +
T Consensus        93 l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~------~  164 (765)
T PRK10049         93 LADAG-QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN------R  164 (765)
T ss_pred             HHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------C
Confidence            77777 777777777777777777777 777777777777777777777777777777777777666655544      5


Q ss_pred             HHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHH-----hccCH---HHHHHHHHHHHhcCCCCHHH-------HHH-
Q psy12713        226 RVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLV-----DQEDF---DGAEEYFNRSIRVDPENASL-------YVH-  284 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~-  284 (551)
                      ..++|+..++++.. .|+..     ........+..     ..+++   ++|+..++.+++..|.++..       ... 
T Consensus       165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            55556555554443 33210     01111111111     11223   45555555555432222211       111 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH----HHHHHHhHHHH
Q psy12713        285 RAMLMLQARGNVDEAIKLIEKAISIDKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA----ELSHIYSLRDA  359 (551)
Q Consensus       285 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~  359 (551)
                      ++.+ +. .|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++...|.+.    .....+.... 
T Consensus       244 l~~L-l~-~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~-  320 (765)
T PRK10049        244 LGAL-LA-RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL-  320 (765)
T ss_pred             HHHH-HH-hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH-
Confidence            2222 33 4555666666666555543211 1223345555566666666666665555554431    1111111110 


Q ss_pred             HHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCc
Q psy12713        360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDP  439 (551)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (551)
                       ....+..++....              ..+....+.......                            .....|.+.
T Consensus       321 -~~~g~~~eA~~~l--------------~~~~~~~P~~~~~~~----------------------------~~~~~p~~~  357 (765)
T PRK10049        321 -LESENYPGALTVT--------------AHTINNSPPFLRLYG----------------------------SPTSIPNDD  357 (765)
T ss_pred             -HhcccHHHHHHHH--------------HHHhhcCCceEeecC----------------------------CCCCCCCch
Confidence             0011111100000              000000000000000                            000000000


Q ss_pred             chhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHH
Q psy12713        440 TKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  519 (551)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  519 (551)
                              ........+..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++++|++..+
T Consensus       358 --------~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l  429 (765)
T PRK10049        358 --------WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL  429 (765)
T ss_pred             --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence                    000011122234556888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhhhhhhhh
Q psy12713        520 RAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       520 ~~~l~~~~~~~~~~~~a~~  538 (551)
                      ++.+|.++...++..+|..
T Consensus       430 ~~~~a~~al~~~~~~~A~~  448 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDV  448 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHH
Confidence            8888888887776665543

>KOG2002|consensus

Probab=99.97  E-value=2.7e-28  Score=233.86  Aligned_cols=441  Identities=14%  Similarity=0.084  Sum_probs=335.4

Q ss_pred             HHHHHHHHHHhhhcH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDY--LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      .++.++..++..|+.  +.|...|..+++..|+   +..+++..|.+.+..|+|-.|+.+|++++.++|..+.   ...+
T Consensus       130 ~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~---Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a---D~rI  203 (1018)
T KOG2002|consen  130 HLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD---NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA---DVRI  203 (1018)
T ss_pred             hhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc---chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC---Cccc
Confidence            344555556666655  9999999999999999   9999999999999999999999999999999886432   1224


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ---YEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      .+|.|++.+| +.+.|+..|.++++++|.+..++..||.+-....+   +..+...+.++...++.+|.+...++..++.
T Consensus       204 gig~Cf~kl~-~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf  282 (1018)
T KOG2002|consen  204 GIGHCFWKLG-MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF  282 (1018)
T ss_pred             hhhhHHHhcc-chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence            4899999999 99999999999999999999999999988776554   6789999999999999999999999977776


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQAR  293 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  293 (551)
                      .      |+++.+......++.....   -++.++.+|++|..+|++++|..+|.+++..+|++ .-.++.+|..++. .
T Consensus       283 K------~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~  355 (1018)
T KOG2002|consen  283 K------KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-R  355 (1018)
T ss_pred             c------ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-h
Confidence            6      9999999999999886633   35679999999999999999999999999999998 7788999999888 9


Q ss_pred             CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC----CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713        294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG----RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER  369 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (551)
                      |+++.|..+|++++...|++.++...+|.+|...+    ..+.|..++.+++...|.+.+.|..++........+..   
T Consensus       356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s---  432 (1018)
T KOG2002|consen  356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS---  432 (1018)
T ss_pred             chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH---
Confidence            99999999999999999999999999999999886    67899999999999999998887766544111111100   


Q ss_pred             hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713        370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY  449 (551)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (551)
                                    ...+..++..+......+....-...+...+..+.+..+...+..+...-....+.+..  .....
T Consensus       433 --------------L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~l  496 (1018)
T KOG2002|consen  433 --------------LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNL  496 (1018)
T ss_pred             --------------HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchh
Confidence                          11111222221111110000000000011111222222222221111110000000000  01113


Q ss_pred             ccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      ...|+.+.+....++++.|.+.|..+++.+|+..+++..+|.+....++..+|...++.++..+..++.++..+|.++..
T Consensus       497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~  576 (1018)
T KOG2002|consen  497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK  576 (1018)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence            34566666688889999999999999999999999999999888899999999999999999999999999999988887


Q ss_pred             hhhhhhh
Q psy12713        530 TLAELMA  536 (551)
Q Consensus       530 ~~~~~~a  536 (551)
                      ..++..+
T Consensus       577 k~~~~~a  583 (1018)
T KOG2002|consen  577 KSEWKPA  583 (1018)
T ss_pred             hhhhccc
Confidence            5554433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=7.8e-28  Score=247.15  Aligned_cols=384  Identities=11%  Similarity=0.006  Sum_probs=286.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..+...|..+...|++++|+..|++++...|.   ++.++..+|.++...|++++|+..++++++..|+++.     +
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~  119 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----L  119 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----H
Confidence            4566899999999999999999999999999998   8999999999999999999999999999999999854     5


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA-----RAQRHFV  214 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----~~~~~~~  214 (551)
                      ..+|.++...| ++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|+....     .......
T Consensus       120 ~~la~~l~~~g-~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~  197 (765)
T PRK10049        120 LALAYVYKRAG-RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRL  197 (765)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence            56999999999 999999999999999999999999999999999999999999988776 5543111     1111111


Q ss_pred             HHHhhcCCChhHH---HHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH-HHHH
Q psy12713        215 VHKMIVPGDRERV---EQSLKEFRNFVDTHSNVVE-------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYV  283 (551)
Q Consensus       215 ~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~  283 (551)
                      ... ......+++   ++|+..++.+++..|.++.       +.......+...|++++|+..|+++++..|..+ .+..
T Consensus       198 ~~~-~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~  276 (765)
T PRK10049        198 SFM-PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR  276 (765)
T ss_pred             hcc-cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH
Confidence            100 122333455   8999999999976444432       222212234677899999999999988764432 2344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC-------------
Q psy12713        284 HRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD-------------  346 (551)
Q Consensus       284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-------------  346 (551)
                      .+|.+++. .|++++|+..|+++++.+|.+    ......++.++...|++++|+..++++....|.             
T Consensus       277 ~la~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~  355 (765)
T PRK10049        277 WVASAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN  355 (765)
T ss_pred             HHHHHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence            46778777 899999999999998887765    356777888889999999999999998887763             


Q ss_pred             HH--HHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHH
Q psy12713        347 EA--ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT  424 (551)
Q Consensus       347 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (551)
                      +.  .+....+..  ...                     .+....++..+.+.                           
T Consensus       356 ~~~~~a~~~~a~~--l~~---------------------~g~~~eA~~~l~~a---------------------------  385 (765)
T PRK10049        356 DDWLQGQSLLSQV--AKY---------------------SNDLPQAEMRAREL---------------------------  385 (765)
T ss_pred             chHHHHHHHHHHH--HHH---------------------cCCHHHHHHHHHHH---------------------------
Confidence            11  122222111  000                     01111222222221                           


Q ss_pred             hhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHH
Q psy12713        425 SILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR  504 (551)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  504 (551)
                             ....|+++..          ....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|..
T Consensus       386 -------l~~~P~n~~l----------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~  448 (765)
T PRK10049        386 -------AYNAPGNQGL----------RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV  448 (765)
T ss_pred             -------HHhCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence                   1112222211          12222336677999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCchHHHHHH
Q psy12713        505 NLDKTIALNPNFHVARAQ  522 (551)
Q Consensus       505 ~~~~al~~~p~~~~a~~~  522 (551)
                      .++++++.+|+++.+...
T Consensus       449 ~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        449 LTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHHHhCCCCHHHHHH
Confidence            999999999999976543

>KOG1126|consensus

Probab=99.97  E-value=1.8e-28  Score=226.62  Aligned_cols=261  Identities=18%  Similarity=0.191  Sum_probs=183.8

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV  145 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  145 (551)
                      ..|......-+..+|+..|.+.-...++   ...++..+|.+|+.+++|++|..+|+.+-+..|-..+.    .-....+
T Consensus       324 ~~~~~~~s~y~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~----meiyST~  396 (638)
T KOG1126|consen  324 GEGYRSLSQYNCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG----MEIYSTT  396 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----hhHHHHH
Confidence            3444455566677888888886666666   56788888888888888888888888888877754222    2224556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      ++.+. +.-+---..+..+..+|+.|+.|..+|.||.-+++++.|+++|+++++++|....++..+|.-+...      .
T Consensus       397 LWHLq-~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~------e  469 (638)
T KOG1126|consen  397 LWHLQ-DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT------E  469 (638)
T ss_pred             HHHHH-hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh------H
Confidence            66666 5444444556677778888888888888888888888888888888888888777777777444433      7


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      .++.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+ .|+.++|+.++++
T Consensus       470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~  548 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYEK  548 (638)
T ss_pred             HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777555 7777777777777


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      |+.++|.++...+..|.+++..+++++|+..+++..
T Consensus       549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            777777777766666666666666555555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=3.5e-26  Score=234.65  Aligned_cols=350  Identities=12%  Similarity=0.029  Sum_probs=280.7

Q ss_pred             hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC-
Q psy12713         73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS-  151 (551)
Q Consensus        73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-  151 (551)
                      ..+.+.+|........+..|.   +..++..++......|++++|...++.+....+ +..........++.+|...+. 
T Consensus       354 ~~~~~~~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~  429 (987)
T PRK09782        354 ATRNKAEALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG-DARLSQTLMARLASLLESHPYL  429 (987)
T ss_pred             ccCchhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc-ccccCHHHHHHHHHHHHhCCcc
Confidence            446677777777777777777   888999999999999999999999999988632 222211112246666655540 


Q ss_pred             -----------------------CH---HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        152 -----------------------DF---TKAFADLDEAEKVDPN--VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       152 -----------------------~~---~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                                             +.   ..+...+.+++...|.  ++.+++.+|.++.. ++..+|+..+.+++...|+
T Consensus       430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd  508 (987)
T PRK09782        430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD  508 (987)
T ss_pred             cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc
Confidence                                   22   2234455556666777  89999999999987 8999999999999999997


Q ss_pred             CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV  283 (551)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (551)
                      +.. ...++..+...      |++++|+..++++....|.. ..+..+|.++...|++++|+.++++++..+|+......
T Consensus       509 ~~~-~L~lA~al~~~------Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~  580 (987)
T PRK09782        509 AWQ-HRAVAYQAYQV------EDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW  580 (987)
T ss_pred             hHH-HHHHHHHHHHC------CCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence            543 44556555555      99999999999987775554 45788899999999999999999999999999887777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHH
Q psy12713        284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ  363 (551)
Q Consensus       284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  363 (551)
                      .++..... .|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.++|++..+...++..      
T Consensus       581 ~La~~l~~-~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a------  652 (987)
T PRK09782        581 WLHAQRYI-PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA------  652 (987)
T ss_pred             HHHHHHHh-CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Confidence            76666444 79999999999999999996 89999999999999999999999999999999988754443322      


Q ss_pred             HHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713        364 MKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI  443 (551)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (551)
                                                                                                      
T Consensus       653 --------------------------------------------------------------------------------  652 (987)
T PRK09782        653 --------------------------------------------------------------------------------  652 (987)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713        444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  523 (551)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  523 (551)
                                     +...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+....
T Consensus       653 ---------------L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~  717 (987)
T PRK09782        653 ---------------LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT  717 (987)
T ss_pred             ---------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence                           44458899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhh
Q psy12713        524 HFVWTSTLAELMAFS  538 (551)
Q Consensus       524 ~~~~~~~~~~~~a~~  538 (551)
                      |.+.....+...+..
T Consensus       718 g~~~~~~~~~~~a~~  732 (987)
T PRK09782        718 PEQNQQRFNFRRLHE  732 (987)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            998887766555544

>KOG1155|consensus

Probab=99.96  E-value=5.6e-26  Score=200.59  Aligned_cols=360  Identities=16%  Similarity=0.057  Sum_probs=309.0

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      +.++-.++..|..+-..|....|+..|..++...|-   +..+|..++.+...       ++........-|.+..+  .
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~---~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~--M  228 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW---FWSAWLELSELITD-------IEILSILVVGLPSDMHW--M  228 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc---chHHHHHHHHhhch-------HHHHHHHHhcCcccchH--H
Confidence            446777888999999999999999999999999997   88999888876432       33344444334433332  2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      .-+.++.++.... +.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-....+++
T Consensus       229 ~~~F~~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY  307 (559)
T KOG1155|consen  229 KKFFLKKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY  307 (559)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence            3356888999999 999999999999988 88888889999999999999999999999999999987766666666666


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  296 (551)
                      ..      ++-.+-.-..+.+..++.-.++....+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|+. +++.
T Consensus       308 v~------~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt  380 (559)
T KOG1155|consen  308 VK------NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNT  380 (559)
T ss_pred             HH------hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hccc
Confidence            55      5545555555667778888889999999999999999999999999999999999999999999888 9999


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713        297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV  376 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (551)
                      ..|++.|+++++++|.+..+|+.+|+.|..++...=|+-+|++|....|++..+|..++.+                   
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C-------------------  441 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC-------------------  441 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH-------------------
Confidence            9999999999999999999999999999999999999999999999999999887766544                   


Q ss_pred             CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713        377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES  456 (551)
Q Consensus       377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (551)
                                                                                                      
T Consensus       442 --------------------------------------------------------------------------------  441 (559)
T KOG1155|consen  442 --------------------------------------------------------------------------------  441 (559)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh-------cCCchHHHHHHHHHHHHH
Q psy12713        457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA-------LNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~l~~~~~~  529 (551)
                        |.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++       .+|+-..+..-|+.-+.+
T Consensus       442 --Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k  519 (559)
T KOG1155|consen  442 --YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK  519 (559)
T ss_pred             --HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence              55568899999999999999988899999999999999999999999999998       678788888888888888


Q ss_pred             hhhhhhhhh
Q psy12713        530 TLAELMAFS  538 (551)
Q Consensus       530 ~~~~~~a~~  538 (551)
                      .++..+|..
T Consensus       520 ~~~~~~As~  528 (559)
T KOG1155|consen  520 MKDFDEASY  528 (559)
T ss_pred             hcchHHHHH
Confidence            887776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=3e-26  Score=235.12  Aligned_cols=361  Identities=11%  Similarity=-0.029  Sum_probs=302.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-------------------------
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ-------------------------  113 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~-------------------------  113 (551)
                      .+.+.+...+......|++++|...|+++....++..........++.+|...+.                         
T Consensus       374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  453 (987)
T PRK09782        374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ  453 (987)
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence            3678899999999999999999999999998744321112233366777666544                         


Q ss_pred             chH---HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH
Q psy12713        114 STK---AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA  190 (551)
Q Consensus       114 ~~~---A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  190 (551)
                      ..+   +...+.+++...|.+  ....+++.+|.++.. + +..+|+..+.+++...|++. ....+|.++...|++++|
T Consensus       454 ~~~~~~~~~~~~~al~~~p~~--~~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA  528 (987)
T PRK09782        454 LPGIADNCPAIVRLLGDMSPS--YDAAAWNRLAKCYRD-T-LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA  528 (987)
T ss_pred             hhhhhhhHHHHHHhcccCCCC--CCHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence            322   233333444444441  125578889999987 7 89999999999999999764 466778888899999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      +..|+++....|.+ ..+..++.++...      |++++|+.+++++++..|........++......|++++|+..+++
T Consensus       529 i~~~rka~~~~p~~-~a~~~la~all~~------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~  601 (987)
T PRK09782        529 LAAWQKISLHDMSN-EDLLAAANTAQAA------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR  601 (987)
T ss_pred             HHHHHHHhccCCCc-HHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999988776654 4567778776666      9999999999999999999988888777777788999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      +++.+|+ +..+.++|.++.+ .|++++|+..+++++..+|+++.++.++|.++...|++++|+..|+++++..|+++.+
T Consensus       602 AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a  679 (987)
T PRK09782        602 SLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL  679 (987)
T ss_pred             HHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9999997 8999999999777 9999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      +..++..                                                                         
T Consensus       680 ~~nLA~a-------------------------------------------------------------------------  686 (987)
T PRK09782        680 IRQLAYV-------------------------------------------------------------------------  686 (987)
T ss_pred             HHHHHHH-------------------------------------------------------------------------
Confidence            5444322                                                                         


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  510 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  510 (551)
                                                  +...|++++|+..|+++++++|+++.+....|.+.....+++.|.+.++++.
T Consensus       687 ----------------------------l~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        687 ----------------------------NQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             ----------------------------HHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence                                        4556999999999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHhhhhhh
Q psy12713        511 ALNPNFHVARAQRHFVWTSTLAELM  535 (551)
Q Consensus       511 ~~~p~~~~a~~~l~~~~~~~~~~~~  535 (551)
                      .++|+.. +....|.++...++...
T Consensus       739 ~~~~~~~-a~~~~g~~~~~~~~~~~  762 (987)
T PRK09782        739 TFSFDSS-IGLRSGAMSTANNNVGG  762 (987)
T ss_pred             hcCccch-hccccchHhhhcccccC
Confidence            9999998 88888888887665533

>KOG1126|consensus

Probab=99.96  E-value=7.9e-28  Score=222.37  Aligned_cols=294  Identities=20%  Similarity=0.192  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLH--AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       138 ~~~~la~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      .+..+|..+..  +- +..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-.....-....++
T Consensus       319 llr~~~~~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            34444444433  33 4567777777755556666667777777777777777777777777777775444443344444


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      +.+      .+--+--...+..+..+|+.|+.|..+|.+|.-+++++.|+++|+++++++|....++..+|.-+.. ...
T Consensus       398 WHL------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee  470 (638)
T KOG1126|consen  398 WHL------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEE  470 (638)
T ss_pred             HHH------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHH
Confidence            443      4444444455566677777777777777777777777777777777777777777777777776555 677


Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK  375 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (551)
                      ++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+                     
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~---------------------  529 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI---------------------  529 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh---------------------
Confidence            77777777777777777777777777777777777777777777777777765432221                     


Q ss_pred             CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhh
Q psy12713        376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENE  455 (551)
Q Consensus       376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (551)
                                                                                                      
T Consensus       530 --------------------------------------------------------------------------------  529 (638)
T KOG1126|consen  530 --------------------------------------------------------------------------------  529 (638)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhh
Q psy12713        456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELM  535 (551)
Q Consensus       456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~  535 (551)
                      +..+.+.|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+++.-++-|+...+++.+|.+|..+|++..
T Consensus       530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence            11244456777777777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             hhhhh
Q psy12713        536 AFSDE  540 (551)
Q Consensus       536 a~~~~  540 (551)
                      |+..+
T Consensus       610 Al~~f  614 (638)
T KOG1126|consen  610 ALLHF  614 (638)
T ss_pred             HHHhh
Confidence            66543

>KOG0624|consensus

Probab=99.96  E-value=9.7e-26  Score=191.54  Aligned_cols=329  Identities=15%  Similarity=0.221  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.-++.+|..++..|++..|+..|..+++.+|++    ..+++..|.+|+.+| +..-|+..+.+++++.|+...+...
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~----Y~aifrRaT~yLAmG-ksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN----YQAIFRRATVYLAMG-KSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----HHHHHHHHHHHhhhc-CCccchhhHHHHHhcCccHHHHHHH
Confidence            33444444444444444444444444444444444    334444444444444 4444444444444444444444444


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH--HH----HhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHV---ARAQRHFV--VH----KMIVPGDRERVEQSLKEFRNFVDTHSNVVEA  247 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~--~~----~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  247 (551)
                      +|.+++++|++++|...|+.+++.+|++..   +...++.+  +.    .+..+...|+...|+.....++++.|-+...
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l  191 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL  191 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence            444444444444444444444444443221   11111100  00    0022333488888888888888888888888


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH--------
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET--------  319 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------  319 (551)
                      +...+.+|...|++..|+..++.+-++..++.+.++.++.+++. .|+.+.++...+++++++|++-..+-.        
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~  270 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV  270 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence            88888999999999999998888888888888888888888777 888888888888888888886433221        


Q ss_pred             ----HHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHh
Q psy12713        320 ----LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR  395 (551)
Q Consensus       320 ----l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  395 (551)
                          -+.-....++|.++++..++.++.+|....+.                                            
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir--------------------------------------------  306 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR--------------------------------------------  306 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee--------------------------------------------
Confidence                12223344555566666666655555532210                                            


Q ss_pred             hchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHh
Q psy12713        396 ENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEA  475 (551)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  475 (551)
                                                                           +........++...|++.+||..+.++
T Consensus       307 -----------------------------------------------------~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  307 -----------------------------------------------------YNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             -----------------------------------------------------eeeeheeeecccccCCHHHHHHHHHHH
Confidence                                                                 000111112245568999999999999


Q ss_pred             hccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        476 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       476 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      +..+|+++.++..++.+|.....|+.|+..|++|.+.+|+|..+...+-.+-.
T Consensus       334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr  386 (504)
T KOG0624|consen  334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR  386 (504)
T ss_pred             HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887765543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=1.1e-25  Score=216.66  Aligned_cols=283  Identities=13%  Similarity=0.068  Sum_probs=250.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .....|..|..+...|++++|+..|+++++.+|+   ++.++..+|.++...|++++|+..+++++...+........++
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  110 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL  110 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            5667788899999999999999999999999998   8999999999999999999999999999985443333334577


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-----ARAQRHFV  214 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-----~~~~~~~~  214 (551)
                      ..+|.++...| ++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..     .+..++.+
T Consensus       111 ~~La~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        111 QELGQDYLKAG-LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            88999999999 9999999999999999999999999999999999999999999999998876533     33445544


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc
Q psy12713        215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQAR  293 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  293 (551)
                      +...      |++++|+..++++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++.. .
T Consensus       190 ~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~  262 (389)
T PRK11788        190 ALAR------GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-L  262 (389)
T ss_pred             HHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-c
Confidence            4444      999999999999999999999999999999999999999999999999998876 4567788888777 9


Q ss_pred             CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      |++++|+..++++++..|+.. .+..++.++...|++++|+..++++++..|++..+...+
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            999999999999999999865 448999999999999999999999999999987655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=1e-24  Score=209.95  Aligned_cols=306  Identities=14%  Similarity=0.111  Sum_probs=253.3

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----hh
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----AD  172 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~  172 (551)
                      .....+.+|..+...|++++|+..|+++++.+|++    ..++..+|.++...| ++++|+..+++++...+..    ..
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~  108 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLL  108 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            44566778999999999999999999999999987    346677999999999 9999999999998754322    35


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH-----HH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV-----EA  247 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~  247 (551)
                      ++..+|.+|...|++++|+..|+++++..|.+..++..++.++...      |++++|+..++++++..|.+.     ..
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            6888999999999999999999999999998888888888777776      999999999999999887653     35


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHH
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQ  326 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~  326 (551)
                      +..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .|++++|+..+++++..+|.+ ..++..++.++..
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            66789999999999999999999999999999999999999777 999999999999999988876 4667889999999


Q ss_pred             hCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccC
Q psy12713        327 RGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD  406 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  406 (551)
                      .|++++|+..++++++..|+.... ..+                                                    
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~l----------------------------------------------------  288 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGADLL-LAL----------------------------------------------------  288 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchHH-HHH----------------------------------------------------
Confidence            999999999999999988875321 111                                                    


Q ss_pred             CCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHH
Q psy12713        407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSY  486 (551)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  486 (551)
                                                                       +..+...|++++|+..++++++..|++....
T Consensus       289 -------------------------------------------------a~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        289 -------------------------------------------------AQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             -------------------------------------------------HHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence                                                             1113445889999999999999999988766


Q ss_pred             hhhhhHHHH--hcCHHHHHHHHHHHh----hcCCch
Q psy12713        487 YQRGQIYCL--FGQYEEALRNLDKTI----ALNPNF  516 (551)
Q Consensus       487 ~~lg~~~~~--~g~~~~A~~~~~~al----~~~p~~  516 (551)
                      ..++.....  .|+.++|+..+++.+    ..+|++
T Consensus       320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            555544432  458888887777655    456664

>KOG1173|consensus

Probab=99.95  E-value=6.3e-25  Score=199.01  Aligned_cols=397  Identities=16%  Similarity=0.167  Sum_probs=297.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHH------hhcCCCC--
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL------VEDTSVD--  131 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------~~~~~~~--  131 (551)
                      ++...+-+|++++-.|+|..|....+.- .....   +..+.+..+.++....++++|...+...      +...|.+  
T Consensus        48 dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~---d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~  123 (611)
T KOG1173|consen   48 DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKR---DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA  123 (611)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence            5677788899999999998887776654 33333   6778888888888888888888887732      1111111  


Q ss_pred             -------------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------------------------
Q psy12713        132 -------------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----------------------------  170 (551)
Q Consensus       132 -------------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------  170 (551)
                                   ........+..|.+|.... +.++|...|.+++..++..                            
T Consensus       124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~-n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a  202 (611)
T KOG1173|consen  124 NTLELNSAGEDLMINLESSICYLRGKVYVALD-NREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA  202 (611)
T ss_pred             ceeccCcccccccccchhceeeeeeehhhhhc-cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence                         1112234455677777777 8888888887776655432                            


Q ss_pred             -----------------------------------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        171 -----------------------------------------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       171 -----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                                                               ++.....+..++..+++.+..+..+..++.+|-+...+.
T Consensus       203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~  282 (611)
T KOG1173|consen  203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP  282 (611)
T ss_pred             hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence                                                     234455566677778888888888888888887776655


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM  289 (551)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  289 (551)
                      ....+++..      |+..+-...-.++++.+|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...|..+
T Consensus       283 ~~ia~l~el------~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsf  356 (611)
T KOG1173|consen  283 LHIACLYEL------GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSF  356 (611)
T ss_pred             HHHHHHHHh------cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence            444466666      77777777778888889999999999999999999999999999999999999999999999996


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713        290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER  369 (551)
Q Consensus       290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (551)
                      .. .|..++|+..|..|-+..|+.......+|.-|...++++-|.++|.+|+.+.|.++-+..-++.....         
T Consensus       357 a~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---------  426 (611)
T KOG1173|consen  357 AG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT---------  426 (611)
T ss_pred             hh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------
Confidence            55 89999999999999999999988899999999999999999999999999999998876554433110         


Q ss_pred             hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713        370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY  449 (551)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (551)
                                    .+.+..|...++.....+..                                  .    ....+.+
T Consensus       427 --------------~~~y~~A~~~f~~~l~~ik~----------------------------------~----~~e~~~w  454 (611)
T KOG1173|consen  427 --------------YEEYPEALKYFQKALEVIKS----------------------------------V----LNEKIFW  454 (611)
T ss_pred             --------------HhhhHHHHHHHHHHHHHhhh----------------------------------c----cccccch
Confidence                          01111222222221100000                                  0    0000122


Q ss_pred             ccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        450 GNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       450 ~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      ..+....|. +.+.+.+++|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.++|.++|+|..+-..|+.+..
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            334445555 7889999999999999999999999999999999999999999999999999999999988888887765


Q ss_pred             H
Q psy12713        529 S  529 (551)
Q Consensus       529 ~  529 (551)
                      .
T Consensus       535 ~  535 (611)
T KOG1173|consen  535 D  535 (611)
T ss_pred             h
Confidence            4

>KOG0548|consensus

Probab=99.95  E-value=2.8e-24  Score=194.14  Aligned_cols=112  Identities=22%  Similarity=0.237  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      ...-.+|...+..|+|+.|+.+|..++.++|.   +...+.+...+|..+|+|++|++.-.+.++++|.-    ..+|..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r   75 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSR   75 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHH
Confidence            34567899999999999999999999999998   88899999999999999999999999999999986    557788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      +|..+..+| +|++|+..|.+.++.+|++...+..++.++
T Consensus        76 ~Gaa~~~lg-~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   76 KGAALFGLG-DYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hHHHHHhcc-cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999 999999999999999999999998888887

>KOG2076|consensus

Probab=99.94  E-value=1.6e-23  Score=200.13  Aligned_cols=368  Identities=14%  Similarity=0.121  Sum_probs=285.4

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      .+.+..++..|..++..|++++|..++.++++.+|.   ++.+|+.+|.+|..+|+.+++...+-.|-.++|.+.+.+  
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W--  210 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW--  210 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH--
Confidence            345788999999999999999999999999999999   999999999999999999999999999999999997654  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                        ..++....++| ++++|+-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|....-+. ...+...
T Consensus       211 --~~ladls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~-~d~i~~~  286 (895)
T KOG2076|consen  211 --KRLADLSEQLG-NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI-EDLIRRV  286 (895)
T ss_pred             --HHHHHHHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH-HHHHHHH
Confidence              44999999999 9999999999999999999999999999999999999999999999999993322211 1111111


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC-----------------
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DP-----------------  276 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~-----------------  276 (551)
                      ...+...++-+.|++.++.++....+  ..+-+..++.+++....++.|..........  .+                 
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            12233336669999999999884322  3456778899999999999999887766551  00                 


Q ss_pred             ----------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        277 ----------ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       277 ----------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                                +-+.....++.+.+. .++..+++..+..--...| +++..+..++.++...|++.+|+.+|..+....+
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~-~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLK-ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhccc-ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence                      111124444444444 4555555555443222223 3478899999999999999999999999887655


Q ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHh
Q psy12713        346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTS  425 (551)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (551)
                      ....                                                                            
T Consensus       446 ~~~~----------------------------------------------------------------------------  449 (895)
T KOG2076|consen  446 YQNA----------------------------------------------------------------------------  449 (895)
T ss_pred             ccch----------------------------------------------------------------------------
Confidence            4321                                                                            


Q ss_pred             hhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHH
Q psy12713        426 ILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN  505 (551)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  505 (551)
                                              ..++..+.++..+|.+++|+..|++++...|++.++...|+.++.++|+.++|.+.
T Consensus       450 ------------------------~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt  505 (895)
T KOG2076|consen  450 ------------------------FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET  505 (895)
T ss_pred             ------------------------hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence                                    11334444577789999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCch---------HHHHHHHHHHHHHhhhhhh
Q psy12713        506 LDKTIALNPNF---------HVARAQRHFVWTSTLAELM  535 (551)
Q Consensus       506 ~~~al~~~p~~---------~~a~~~l~~~~~~~~~~~~  535 (551)
                      +++...-||.+         ......++.++...|+..+
T Consensus       506 L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  506 LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            99987444322         3345666677777666544

>KOG1155|consensus

Probab=99.94  E-value=2.4e-23  Score=184.12  Aligned_cols=341  Identities=15%  Similarity=0.136  Sum_probs=275.1

Q ss_pred             hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHhcC
Q psy12713         73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-TSVDPKIKVNAHIKRAVVHLHAAS  151 (551)
Q Consensus        73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~  151 (551)
                      ..++.-.-+..........|. ..+...-+.++.++....+.++++.-++..... .|.++.+...    .|.+..... 
T Consensus       203 eL~~lit~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~----~A~~~y~~r-  276 (559)
T KOG1155|consen  203 ELSELITDIEILSILVVGLPS-DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQ----IAAASYNQR-  276 (559)
T ss_pred             HHHHhhchHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHH----HHHHHhhhh-
Confidence            334444444444444444442 025666677888888888999999999998887 7777665555    889999999 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      ++++|+..|+...+.+|-..+-.-...++++-.++-.+-.-..+.+..++.-.++.--.+|..+...      ++.++|+
T Consensus       277 DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr------~eHEKAv  350 (559)
T KOG1155|consen  277 DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR------SEHEKAV  350 (559)
T ss_pred             hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH------HhHHHHH
Confidence            9999999999999999988877777788777777765555556667777766666655566444444      9999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      .+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|-. ++-..=|+-+|++++...|
T Consensus       351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kP  429 (559)
T KOG1155|consen  351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYFQKALELKP  429 (559)
T ss_pred             HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999666 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI  391 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  391 (551)
                      +++..|..||.||.+.++.++|+++|.+++.....+..+...+                                     
T Consensus       430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L-------------------------------------  472 (559)
T KOG1155|consen  430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL-------------------------------------  472 (559)
T ss_pred             CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH-------------------------------------
Confidence            9999999999999999999999999999998876644432221                                     


Q ss_pred             HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHh
Q psy12713        392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD  471 (551)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  471 (551)
                                                                                      +..+.+.++.++|..+
T Consensus       473 ----------------------------------------------------------------akLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  473 ----------------------------------------------------------------AKLYEELKDLNEAAQY  488 (559)
T ss_pred             ----------------------------------------------------------------HHHHHHHHhHHHHHHH
Confidence                                                                            1124455788999999


Q ss_pred             hHHhhc-------cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy12713        472 LDEAEK-------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW  527 (551)
Q Consensus       472 ~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  527 (551)
                      |++.++       .+|+...+...|+.-+.+.+++++|..+..+++.-+|...++...+-.+.
T Consensus       489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir  551 (559)
T KOG1155|consen  489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIR  551 (559)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            998888       45667778888999999999999999999999999888777765554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.94  E-value=1.1e-22  Score=204.78  Aligned_cols=406  Identities=13%  Similarity=0.042  Sum_probs=283.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+...+..+...++.|+++.|+..|+++++.+|.   ++.+...++.++...|+.++|+.++++++  .|.+...  ..+
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~--~~l  105 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISS--RGL  105 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCH--HHH
Confidence            5678999999999999999999999999999998   64333488888889999999999999999  4444432  344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++...| ++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++..  
T Consensus       106 lalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--  181 (822)
T PRK14574        106 ASAARAYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--  181 (822)
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--
Confidence            55688999999 99999999999999999999999999999999999999999999999999985554 444433322  


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH-----------------------------
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-----------------------------  270 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-----------------------------  270 (551)
                          .++..+|+..+++++..+|++.+++..+..++...|-...|.+...+                             
T Consensus       182 ----~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~  257 (822)
T PRK14574        182 ----TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT  257 (822)
T ss_pred             ----cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence                37776799999999999999999888888888777766555554432                             


Q ss_pred             -------------------HHhc---CCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Q psy12713        271 -------------------SIRV---DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETLGTI  323 (551)
Q Consensus       271 -------------------~~~~---~~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  323 (551)
                                         .+..   .|....    +....-.++.. .|++.+++..|+...... |--+.+....|..
T Consensus       258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~-r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada  336 (822)
T PRK14574        258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV-RHQTADLIKEYEAMEAEGYKMPDYARRWAASA  336 (822)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence                               2221   121111    11122222233 677777777777665433 2234566677777


Q ss_pred             HHHhCCHHHHHHHHHHhcccccC----HHHHH--H--HHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHh
Q psy12713        324 EVQRGRLEEAVKCFNKALPLARD----EAELS--H--IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR  395 (551)
Q Consensus       324 ~~~~g~~~~A~~~~~~a~~~~~~----~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  395 (551)
                      |...++.++|...|+.++.-.|.    ..++.  .  .++..+                         .+.+..+...+.
T Consensus       337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-------------------------~e~~~~A~~~l~  391 (822)
T PRK14574        337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-------------------------SEQLDKAYQFAV  391 (822)
T ss_pred             HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-------------------------cccHHHHHHHHH
Confidence            77788888888888777665421    11110  1  111110                         001111111111


Q ss_pred             hchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhc-hhhhhcChhHHHHhhHH
Q psy12713        396 ENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDE  474 (551)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~  474 (551)
                      +......-.....+....                              ...+.+........ .+...|++.+|++.+++
T Consensus       392 ~~~~~~p~~~~~~~~~~~------------------------------~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~  441 (822)
T PRK14574        392 NYSEQTPYQVGVYGLPGK------------------------------EPNDDWIEGQTLLVQSLVALNDLPTAQKKLED  441 (822)
T ss_pred             HHHhcCCcEEeccCCCCC------------------------------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            100000000000000000                              00112222222222 24556999999999999


Q ss_pred             hhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhh
Q psy12713        475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMA  536 (551)
Q Consensus       475 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  536 (551)
                      .+...|.|+.++..+|.++...|.+.+|...++.++.++|++..+...++.+....++..+|
T Consensus       442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A  503 (822)
T PRK14574        442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM  503 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887766

>KOG0548|consensus

Probab=99.94  E-value=3.2e-23  Score=187.32  Aligned_cols=355  Identities=20%  Similarity=0.276  Sum_probs=256.8

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713        101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI  180 (551)
Q Consensus       101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  180 (551)
                      ....|...+..|+++.|+.+|..++.++|.+...    |.+...+|..+| +|++|++.-.+.++++|+.+..|..+|..
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl----ySnrsaa~a~~~-~~~~al~da~k~~~l~p~w~kgy~r~Gaa   79 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL----YSNRSAAYASLG-SYEKALKDATKTRRLNPDWAKGYSRKGAA   79 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccch----hcchHHHHHHHh-hHHHHHHHHHHHHhcCCchhhHHHHhHHH
Confidence            3456888999999999999999999999997543    455999999999 99999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh----cCCC-----------hhHH---HHHHHHHHHHHHhCC
Q psy12713        181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI----VPGD-----------RERV---EQSLKEFRNFVDTHS  242 (551)
Q Consensus       181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~~~---~~A~~~~~~~~~~~~  242 (551)
                      +.-.|+|++|+..|.+.++.+|++......+..++....    .+..           .-+.   +.+.....+.+..+|
T Consensus        80 ~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p  159 (539)
T KOG0548|consen   80 LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP  159 (539)
T ss_pred             HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence            999999999999999999999999888877776551110    0000           0000   011111111111111


Q ss_pred             Cc--------------------------------------------------------------HHHHHHHHHHHHhccC
Q psy12713        243 NV--------------------------------------------------------------VEACTLFAQVLVDQED  260 (551)
Q Consensus       243 ~~--------------------------------------------------------------~~~~~~la~~~~~~~~  260 (551)
                      .+                                                              ....-.+|.......+
T Consensus       160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~  239 (539)
T KOG0548|consen  160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD  239 (539)
T ss_pred             HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            10                                                              0123567888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHH
Q psy12713        261 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A  333 (551)
                      +..|++.|..+++++ .+...+.+.+.+++. .|.+.+++.....+++.....       ..+...+|..+.+.++++.|
T Consensus       240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e-~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a  317 (539)
T KOG0548|consen  240 FETAIQHYAKALELA-TDITYLNNIAAVYLE-RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA  317 (539)
T ss_pred             HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHh-ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence            999999999999988 777888888888887 888888888888877665432       23344567778888889999


Q ss_pred             HHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccc
Q psy12713        334 VKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVV  413 (551)
Q Consensus       334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  413 (551)
                      +.+|++++....+ ++....+...                              +.+++....   .             
T Consensus       318 i~~~~kaLte~Rt-~~~ls~lk~~------------------------------Ek~~k~~e~---~-------------  350 (539)
T KOG0548|consen  318 IKYYQKALTEHRT-PDLLSKLKEA------------------------------EKALKEAER---K-------------  350 (539)
T ss_pred             HHHHHHHhhhhcC-HHHHHHHHHH------------------------------HHHHHHHHH---H-------------
Confidence            9999887765443 1111111100                              000000000   0             


Q ss_pred             cCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHH
Q psy12713        414 MDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  493 (551)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  493 (551)
                                           .--.+..       ....-..+..++..|+|..|+..|.++|+.+|+++..|.++|.||
T Consensus       351 ---------------------a~~~pe~-------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  351 ---------------------AYINPEK-------AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY  402 (539)
T ss_pred             ---------------------HhhChhH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence                                 0000000       000111233478889999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713        494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAF  537 (551)
Q Consensus       494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  537 (551)
                      .++|++..|+.+.+++++++|++..+|.+.|.++..+.++..|.
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl  446 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL  446 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877766544

>KOG0624|consensus

Probab=99.93  E-value=3.3e-23  Score=176.28  Aligned_cols=309  Identities=20%  Similarity=0.257  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      +.-.+.+|..++..| ++..|+..|..+++.+|++-.+++.+|.+|..+|+..-|+..+.+++++.|+...+..++|.++
T Consensus        38 vekhlElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   38 VEKHLELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            445677999999999 9999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcH---HH------------HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV---EA------------CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      ++.      |.+++|...|..+++.+|++.   ++            +......+...|+...|+....+.+++.|-+..
T Consensus       117 lK~------Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~  190 (504)
T KOG0624|consen  117 LKQ------GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS  190 (504)
T ss_pred             hhc------ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence            776      999999999999999999652   22            223344556789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHH
Q psy12713        281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA  360 (551)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  360 (551)
                      .+...+.||.. .|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++......|..... 
T Consensus       191 l~~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK-  268 (504)
T KOG0624|consen  191 LRQARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK-  268 (504)
T ss_pred             HHHHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH-
Confidence            99999999877 9999999999999999999999999999999999999999999999999999998876555432210 


Q ss_pred             HHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcc
Q psy12713        361 IAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPT  440 (551)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (551)
                                                   ..+.+..                                            
T Consensus       269 -----------------------------v~K~les--------------------------------------------  275 (504)
T KOG0624|consen  269 -----------------------------VVKSLES--------------------------------------------  275 (504)
T ss_pred             -----------------------------HHHHHHH--------------------------------------------
Confidence                                         0111100                                            


Q ss_pred             hhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchH----HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        441 KTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD----SYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                                     .......++|.++++..++.++.+|..+.    ..-.+..|+...|++.+|+..+..+|.++|++
T Consensus       276 ---------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d  340 (504)
T KOG0624|consen  276 ---------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD  340 (504)
T ss_pred             ---------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence                           00122337899999999999999998443    45567889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhc
Q psy12713        517 HVARAQRHFVWTSTLAELMAFSDEF  541 (551)
Q Consensus       517 ~~a~~~l~~~~~~~~~~~~a~~~~~  541 (551)
                      ..++..++.+|.....+.+|+.+.-
T Consensus       341 v~~l~dRAeA~l~dE~YD~AI~dye  365 (504)
T KOG0624|consen  341 VQVLCDRAEAYLGDEMYDDAIHDYE  365 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999998888888877654

>KOG2003|consensus

Probab=99.93  E-value=2e-23  Score=184.18  Aligned_cols=389  Identities=13%  Similarity=0.080  Sum_probs=293.8

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      +..|..++++.+|.+|+++|+-++...|.-  .....++..+|..+.+.|+|+.|+..|+.+.+..|+.     .+-+++
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~-----~a~~nl  315 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF-----IAALNL  315 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH-----Hhhhhh
Confidence            456888889999999999999999888864  3446677888888999999999999999998888763     233456


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc--------------CCC---------------------------------------
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKV--------------DPN---------------------------------------  169 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~--------------~~~---------------------------------------  169 (551)
                      ..|++..| +-++-.+.|.+.+.+              +|+                                       
T Consensus       316 ~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi  394 (840)
T KOG2003|consen  316 IICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVI  394 (840)
T ss_pred             hhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccc
Confidence            77777777 777777777766654              111                                       


Q ss_pred             -----------------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhhcCCChh
Q psy12713        170 -----------------------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       170 -----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  225 (551)
                                             -.+.-.+.+..+++.|+++.|++.++-.-+.+.... .+-.++..+++.    ..-.
T Consensus       395 ~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl----qggk  470 (840)
T KOG2003|consen  395 APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL----QGGK  470 (840)
T ss_pred             ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH----hccc
Confidence                                   023556778889999999999998876555443322 223344444333    1226


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      ++..|.++...++..+.-++.+..+.|.+.+..|++++|.+.|++++..+.....+++++|..+-. +|+.++|+++|-+
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~~ldeald~f~k  549 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LGNLDEALDCFLK  549 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hcCHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999999999555 9999999999999


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhH
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITK  385 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (551)
                      .-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.+..-++......                        
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe------------------------  605 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE------------------------  605 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc------------------------
Confidence            88888888999999999999999999999999999999999998876654331000                        


Q ss_pred             HHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcCh
Q psy12713        386 NEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDF  465 (551)
Q Consensus       386 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (551)
                                                     ++-.++...+..  .+...|.+.+..-          ..+..|....-+
T Consensus       606 -------------------------------gdksqafq~~yd--syryfp~nie~ie----------wl~ayyidtqf~  642 (840)
T KOG2003|consen  606 -------------------------------GDKSQAFQCHYD--SYRYFPCNIETIE----------WLAAYYIDTQFS  642 (840)
T ss_pred             -------------------------------cchhhhhhhhhh--cccccCcchHHHH----------HHHHHHHhhHHH
Confidence                                           000000000000  1111121111111          111113344557


Q ss_pred             hHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713        466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL  531 (551)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  531 (551)
                      ++|+.+|+++.-+.|+.......++.|+.+.|+|++|.+.|+......|.+.+.+..|..+...+|
T Consensus       643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            889999999999999999999999999999999999999999999999999998888777766555

>KOG0495|consensus

Probab=99.92  E-value=2.3e-21  Score=178.66  Aligned_cols=382  Identities=16%  Similarity=0.113  Sum_probs=286.9

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ++.-..|+.-+..+...+-++-|+.+|..+|+..|.   ....|...+..--..|..++-..++++++..-|..+..   
T Consensus       513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~l---  586 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEIL---  586 (913)
T ss_pred             chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhH---
Confidence            445567777788888888888888888888888887   67777777766667788888888888888888776443   


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                       |+..+..+...| +...|...+.++++.+|++.++|+.-..+.....+++.|...|.++....|. ...|+..+.....
T Consensus       587 -wlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~  663 (913)
T KOG0495|consen  587 -WLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERY  663 (913)
T ss_pred             -HHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH
Confidence             344777777788 8888888888888888888888888888888888888888888888876654 3455555544444


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD  297 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (551)
                      .      ++.++|+..++++++.+|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+ -.+.|+.-
T Consensus       664 l------d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl-eEk~~~~~  736 (913)
T KOG0495|consen  664 L------DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL-EEKDGQLV  736 (913)
T ss_pred             h------hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH-HHHhcchh
Confidence            4      8888888888888888888888888888888888888888888888888888888888888887 44478888


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCC
Q psy12713        298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS  377 (551)
Q Consensus       298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (551)
                      .|...++++.-.+|++...|.....+-.+.|+.+.|...+.+|++..|++..+|.--..               ..+...
T Consensus       737 rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~---------------le~~~~  801 (913)
T KOG0495|consen  737 RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW---------------LEPRPQ  801 (913)
T ss_pred             hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH---------------hccCcc
Confidence            88888888888888888888888888888888888888888888888887765432110               000000


Q ss_pred             cchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhc
Q psy12713        378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG  457 (551)
Q Consensus       378 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (551)
                      .     ......+++....                                         ++...          ...+.
T Consensus       802 r-----kTks~DALkkce~-----------------------------------------dphVl----------laia~  825 (913)
T KOG0495|consen  802 R-----KTKSIDALKKCEH-----------------------------------------DPHVL----------LAIAK  825 (913)
T ss_pred             c-----chHHHHHHHhccC-----------------------------------------CchhH----------HHHHH
Confidence            0     0011112221111                                         11111          11122


Q ss_pred             hhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713        458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  526 (551)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  526 (551)
                      .+....++++|.++|.++++.+|++.++|...-..+...|.-++-.+.+.++..-.|.+.+.|.....-
T Consensus       826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~  894 (913)
T KOG0495|consen  826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD  894 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence            255567899999999999999999999998888899999998999999999999999988877765443

>KOG1173|consensus

Probab=99.92  E-value=1.6e-22  Score=183.61  Aligned_cols=284  Identities=17%  Similarity=0.160  Sum_probs=258.5

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      ...+++....+|..++..++|.+..++++..++.+|-   +..++....-++..+|+..+-...-.+.++..|+.+.   
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf---h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~---  313 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF---HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL---  313 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC---CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc---
Confidence            3458899999999999999999999999999999997   7766666555999999999988888999999999855   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                       .|+..|..|...| ++++|..+|.++..++|....+|...|..+...|+.++|+.+|..|.++-|........+|.-+.
T Consensus       314 -sW~aVg~YYl~i~-k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~  391 (611)
T KOG1173|consen  314 -SWFAVGCYYLMIG-KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM  391 (611)
T ss_pred             -chhhHHHHHHHhc-CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence             5666999999999 99999999999999999999999999999999999999999999999999998888888886666


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD----P---ENASLYVHRAMLM  289 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~l~~~~  289 (551)
                      +.      ++++-|...|.+++.+.|.++-+...+|.+.+..+.|.+|..+|+.++..-    +   .....+.++|.++
T Consensus       392 ~t------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  392 RT------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             Hh------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            66      999999999999999999999999999999999999999999999998432    1   2345688999995


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                       ++.+.+++|+..+++++...|.++.++..+|.+|..+|+++.|+++|.+++.+.|++..+...+.
T Consensus       466 -Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  466 -RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             -HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence             45999999999999999999999999999999999999999999999999999999987766665

>KOG0495|consensus

Probab=99.92  E-value=3.3e-21  Score=177.61  Aligned_cols=388  Identities=13%  Similarity=0.011  Sum_probs=253.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +-+.|+..|..+-..|-.-.+..+...+|...-+....-..|..-+..+.+.+-++-|+..|..+++..|....++    
T Consensus       478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slW----  553 (913)
T KOG0495|consen  478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLW----  553 (913)
T ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHH----
Confidence            4566666666666666666666666666655443333556666677777777777777777777777777664432    


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ...+..--..| ..+.-..++++++...|.....|.+.+..+...|+...|...+.++++.+|++.+.|.....+.+.  
T Consensus       554 lra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e--  630 (913)
T KOG0495|consen  554 LRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE--  630 (913)
T ss_pred             HHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--
Confidence            33455555555 667777777777777777777777777777777777777777777777777777766655433333  


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                          ..+++.|...|.++....|. ..+|..-+.+...+++.++|+..++++++..|+....|..+|.++-+ +++.+.|
T Consensus       631 ----n~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~a  704 (913)
T KOG0495|consen  631 ----NDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMA  704 (913)
T ss_pred             ----cccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHH
Confidence                36777777777777664443 45666666777777777777777777777777777777777777444 7777777


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR  379 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (551)
                      ...|...++..|.++..|..++.+-.+.|+...|...++++.-.+|++..+|.....                       
T Consensus       705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir-----------------------  761 (913)
T KOG0495|consen  705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR-----------------------  761 (913)
T ss_pred             HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH-----------------------
Confidence            777777777777777777777777777777777777777777777777665432211                       


Q ss_pred             hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713        380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK  459 (551)
Q Consensus       380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (551)
                                                                   .-++.+..+.+..-...++...+..+.++.....+
T Consensus       762 ---------------------------------------------~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l  796 (913)
T KOG0495|consen  762 ---------------------------------------------MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL  796 (913)
T ss_pred             ---------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence                                                         11111111111111112222223333333222221


Q ss_pred             hhh-cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713        460 HAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA  532 (551)
Q Consensus       460 ~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  532 (551)
                      ... ++    ......|++....++.++...|..+....++++|.++|.++++++|++.++|...-..+...|.
T Consensus       797 e~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~  866 (913)
T KOG0495|consen  797 EPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT  866 (913)
T ss_pred             ccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC
Confidence            111 12    2223445556678899999999999999999999999999999999999999888888777773

>KOG2076|consensus

Probab=99.92  E-value=2e-21  Score=185.96  Aligned_cols=329  Identities=15%  Similarity=0.141  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      ...++..|+..+..|++++|...+.++++.+|.++    .+|..+|.+|.++| +.+++....-.+-.++|.+.+.|..+
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~----~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP----IAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----hhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            55566666666666777777777777777777663    35555777777777 77777777777777777777777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV-----EACTLFA  252 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la  252 (551)
                      +....++|++++|.-+|.++++.+|.+....+..+.++.+.      |+...|...|.+++...|...     ......+
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~------G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~  287 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT------GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA  287 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            77777777777777777777777777766666666555555      777777777777777766221     1223345


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcC----------------
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKS----------------  312 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------  312 (551)
                      ..+...++-+.|++.++.++....  ...+.+..++.+++. ...++.|..........  .++                
T Consensus       288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~-~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK-NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            555666666777777776666221  122334445555455 56666666655544431  000                


Q ss_pred             ----------CHHH-HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchh
Q psy12713        313 ----------CMFA-YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQ  381 (551)
Q Consensus       313 ----------~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (551)
                                +..+ ...++.+..+.++..+++..+..--...|.+..                                
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~--------------------------------  414 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV--------------------------------  414 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH--------------------------------
Confidence                      0111 334444444444444444443322221111110                                


Q ss_pred             hhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhh
Q psy12713        382 NITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHA  461 (551)
Q Consensus       382 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (551)
                                                                                          ..+......+..
T Consensus       415 --------------------------------------------------------------------dL~~d~a~al~~  426 (895)
T KOG2076|consen  415 --------------------------------------------------------------------DLYLDLADALTN  426 (895)
T ss_pred             --------------------------------------------------------------------HHHHHHHHHHHh
Confidence                                                                                001111222445


Q ss_pred             hcChhHHHHhhHHhhccCCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        462 ASDFTKAFADLDEAEKVDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      .|++.+|+.++..+....+. +..+|+.+|.||..+|.+++|+++|++++.+.|++.+++..|+.++...|+..+|..
T Consensus       427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalE  504 (895)
T KOG2076|consen  427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALE  504 (895)
T ss_pred             cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Confidence            58999999999999988764 678999999999999999999999999999999999999999999999999887653

>KOG2003|consensus

Probab=99.91  E-value=1.3e-22  Score=179.19  Aligned_cols=410  Identities=16%  Similarity=0.192  Sum_probs=318.4

Q ss_pred             CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhc--CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-Cc
Q psy12713         56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIES--TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-DP  132 (551)
Q Consensus        56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~  132 (551)
                      +..-+-..++.+|..|-...-+.+|+..|+-+++.  .|+   ....-..+|.++++..+|.+|+++|+-++..-|. +.
T Consensus       196 nldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~n---ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink  272 (840)
T KOG2003|consen  196 NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPN---AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK  272 (840)
T ss_pred             cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCC---CceeeeeecceeeehhhHHHHHHHHHHHHhhccccch
Confidence            34446788999999999999999999999987753  454   5566778999999999999999999999998775 44


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----------
Q psy12713        133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN-----------  201 (551)
Q Consensus       133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------  201 (551)
                      +.+...+.++|..+.+.| +|+.|+..|+.+++..|+.. +-+++..|++..|+-++..+.|.+.+.+-           
T Consensus       273 ~~rikil~nigvtfiq~g-qy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~  350 (840)
T KOG2003|consen  273 DMRIKILNNIGVTFIQAG-QYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE  350 (840)
T ss_pred             hhHHHHHhhcCeeEEecc-cchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence            556778889999999999 99999999999999999654 45567788999999999999999998651           


Q ss_pred             ---CCCHHHHH---------------------------------------HHHHHHHH-----------------hhcCC
Q psy12713        202 ---PNFHVARA---------------------------------------QRHFVVHK-----------------MIVPG  222 (551)
Q Consensus       202 ---~~~~~~~~---------------------------------------~~~~~~~~-----------------~~~~~  222 (551)
                         |++....-                                       ..-||.-.                 ...+.
T Consensus       351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l  430 (840)
T KOG2003|consen  351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL  430 (840)
T ss_pred             cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence               11110000                                       00000000                 02234


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                      +.|+++.|++.++-.-+.+.... .+-.++..+++.+  +++..|..+-..++.++.-++.+..+.|.+.+. .|++++|
T Consensus       431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~-ngd~dka  509 (840)
T KOG2003|consen  431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA-NGDLDKA  509 (840)
T ss_pred             hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee-cCcHHHH
Confidence            56888888888876655554433 3456666666654  488999999999999999999999999999887 9999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR  379 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (551)
                      .+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++.++...++...                     
T Consensus       510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy---------------------  568 (840)
T KOG2003|consen  510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY---------------------  568 (840)
T ss_pred             HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------------
Confidence            99999999999999999999999999999999999999999888888877765554331                     


Q ss_pred             hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713        380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK  459 (551)
Q Consensus       380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (551)
                        ....+...+++.+..                                  .....|.++..+-.+          +..|
T Consensus       569 --e~led~aqaie~~~q----------------------------------~~slip~dp~ilskl----------~dly  602 (840)
T KOG2003|consen  569 --ELLEDPAQAIELLMQ----------------------------------ANSLIPNDPAILSKL----------ADLY  602 (840)
T ss_pred             --HHhhCHHHHHHHHHH----------------------------------hcccCCCCHHHHHHH----------HHHh
Confidence              111222223332222                                  123344444333222          2225


Q ss_pred             hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      -+.|+-.+|..++-......|.+.+..-++|..|....=+++|+.+|+++--+.|+-..-....+.+++..|+...|+.
T Consensus       603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d  681 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD  681 (840)
T ss_pred             hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence            5679999999999999999999999999999999999999999999999999999999888899999999998877763

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=7.7e-24  Score=192.68  Aligned_cols=264  Identities=22%  Similarity=0.278  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIEST--SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ..+..|..++..|++++|+.++.+.+...  |+   +...|..+|.+....++++.|+..|++++..++.++..    +.
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~---~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~----~~   82 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPD---DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD----YE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc----cc
Confidence            34567999999999999999997765554  66   88999999999999999999999999999988876543    33


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN--PNFHVARAQRHFVVHKM  218 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~  218 (551)
                      .++.+ ...+ ++++|+..++++.+..+ ++..+.....++...++++++...++++....  +.++..+..+|.++...
T Consensus        83 ~l~~l-~~~~-~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   83 RLIQL-LQDG-DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             ccccc-cccc-ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            46666 6888 99999999999987664 57778888889999999999999999987655  67788889999888877


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                            |+.++|+..++++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.+++. .|++++
T Consensus       160 ------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~  232 (280)
T PF13429_consen  160 ------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEE  232 (280)
T ss_dssp             ------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHH
T ss_pred             ------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-cccccc
Confidence                  9999999999999999999999999999999999999999999998888889999999999999887 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      |+.++++++..+|+++..+..+|.++...|+.++|..++.+++..
T Consensus       233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=2.1e-20  Score=188.48  Aligned_cols=381  Identities=12%  Similarity=0.040  Sum_probs=261.9

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV  145 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  145 (551)
                      ..+..+...|+.++|+.++++++...|.   ....+..+|.++...|++++|++.|+++++.+|+++...    ..++..
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~---~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~  145 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNI---SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMT  145 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHH
Confidence            5666677778999999999998844444   555666668888888999999999999999998885543    457888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-----
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV-----  220 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----  220 (551)
                      +...+ +.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++...+..+..++....+     
T Consensus       146 y~~~~-q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        146 QADAG-RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             HhhcC-CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            88888 8999999999988888875554 5566666667777779999999999988888776654443322200     


Q ss_pred             --------------------------------CC--Chh---HHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHH
Q psy12713        221 --------------------------------PG--DRE---RVEQSLKEFRNFVDTHSNVV-------EACTLFAQVLV  256 (551)
Q Consensus       221 --------------------------------~~--~~~---~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~  256 (551)
                                                      ..  ..+   -.+.|+..++.++...+..|       .+..-.-.++.
T Consensus       224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~  303 (822)
T PRK14574        224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL  303 (822)
T ss_pred             HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence                                            00  111   23456666677676433322       23344555667


Q ss_pred             hccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc------CCHHHHHHHHHHHHHhCC
Q psy12713        257 DQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~  329 (551)
                      ..|++.+++..|+...... |-...+....|..|+. .+++++|+.+|.+++...|      .+......|...+...++
T Consensus       304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~-~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~  382 (822)
T PRK14574        304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID-RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ  382 (822)
T ss_pred             HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence            7888999999998876544 2234566677888777 8999999999998887552      233445678888888999


Q ss_pred             HHHHHHHHHHhccccc------------CHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhc
Q psy12713        330 LEEAVKCFNKALPLAR------------DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN  397 (551)
Q Consensus       330 ~~~A~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  397 (551)
                      +++|..++++..+..|            .+++.............                    ..++...+.+.+.+ 
T Consensus       383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~--------------------~~gdl~~Ae~~le~-  441 (822)
T PRK14574        383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV--------------------ALNDLPTAQKKLED-  441 (822)
T ss_pred             HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH--------------------HcCCHHHHHHHHHH-
Confidence            9999999888877444            12222222211111000                    00111122222221 


Q ss_pred             hhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhc
Q psy12713        398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEK  477 (551)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  477 (551)
                                                       -....|++....+..          +..+...|.+.+|...++.+..
T Consensus       442 ---------------------------------l~~~aP~n~~l~~~~----------A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        442 ---------------------------------LSSTAPANQNLRIAL----------ASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             ---------------------------------HHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHhh
Confidence                                             022344444333322          2224556999999999999999


Q ss_pred             cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713        478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  520 (551)
Q Consensus       478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  520 (551)
                      ++|++..+.+.+|.++..+|++.+|.....++++..|+++.+.
T Consensus       479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            9999999999999999999999999999999999999998665

>TIGR00540 hemY_coli hemY protein

Probab=99.90  E-value=3e-20  Score=177.64  Aligned_cols=280  Identities=15%  Similarity=0.147  Sum_probs=230.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .....+..|...+..|+++.|.+.+.++.+..|.   ....+...|.+...+|+++.|..++.++.+..|++..   .+.
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---~~~  156 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---LVE  156 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---HHH
Confidence            3456678899999999999999999999999887   7778888899999999999999999999998887642   122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ...+.++...| +++.|...++.+.+..|+++.++..++.++...|++++|.+.+.+..+....++.....+..... . 
T Consensus       157 ~~~a~l~l~~~-~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~-~-  233 (409)
T TIGR00540       157 IARTRILLAQN-ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE-I-  233 (409)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H-
Confidence            33699999999 99999999999999999999999999999999999999999999999876554443321111111 0 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhc
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHS----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY--VHRAMLMLQAR  293 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  293 (551)
                      .....+..+++...+.++....|    +++..+..++..+...|++++|...++++++..|++....  .......+. .
T Consensus       234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~-~  312 (409)
T TIGR00540       234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK-P  312 (409)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC-C
Confidence            00112455556668888888777    5899999999999999999999999999999999987532  222222244 6


Q ss_pred             CCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HhcccccCHHH
Q psy12713        294 GNVDEAIKLIEKAISIDKSCM--FAYETLGTIEVQRGRLEEAVKCFN--KALPLARDEAE  349 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~  349 (551)
                      ++.+.++..++++++..|+++  .....+|+++.+.|++++|.++|+  .+++..|++..
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence            889999999999999999999  889999999999999999999999  68888888765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174|consensus

Probab=99.90  E-value=9.2e-20  Score=159.27  Aligned_cols=391  Identities=13%  Similarity=0.083  Sum_probs=282.7

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC----------
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT----------  128 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------  128 (551)
                      .+.+.-...+.++...++-+.|+....++.....    .+.....++..+..-++-.++.-.+...+...          
T Consensus        95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r----~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~l  170 (564)
T KOG1174|consen   95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR----SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEAL  170 (564)
T ss_pred             ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc----chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHH
Confidence            3677788889999999999999987766554433    34555566666655555445444444433222          


Q ss_pred             ---------------------CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH
Q psy12713        129 ---------------------SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY  187 (551)
Q Consensus       129 ---------------------~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  187 (551)
                                           |..++. ..-....+.++.... .+..+..++-.-....|++...+..+|.++...|++
T Consensus       171 l~l~v~g~e~~S~~m~~~~~~~~~dwl-s~wika~Aq~~~~~h-s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn  248 (564)
T KOG1174|consen  171 LELGVNGNEINSLVMHAATVPDHFDWL-SKWIKALAQMFNFKH-SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY  248 (564)
T ss_pred             HHHhhcchhhhhhhhhheecCCCccHH-HHHHHHHHHHHhccc-chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence                                 222221 111223444554444 555556666666777899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy12713        188 EEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY  267 (551)
Q Consensus       188 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  267 (551)
                      .+|+..|+++..++|......-..|..+.+-      |+++.-.......+........-|+.-+..++..+++..|+.+
T Consensus       249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e------g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQE------GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             hHHHHHHHHHhhCChhhhhhHHHHHHHHHhc------cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence            9999999999999998888877777665555      8888888888888888877777888888888889999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      -+++|+.+|.+..++...|.++.. .|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-..+++..|.+
T Consensus       323 ~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s  401 (564)
T KOG1174|consen  323 VEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS  401 (564)
T ss_pred             HHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999988666 8999999999999999999888999999999999999999998888888888877


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhh
Q psy12713        348 AELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSIL  427 (551)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (551)
                      .....+++..                                                      +.+......+....+ 
T Consensus       402 A~~LtL~g~~------------------------------------------------------V~~~dp~~rEKAKkf-  426 (564)
T KOG1174|consen  402 ARSLTLFGTL------------------------------------------------------VLFPDPRMREKAKKF-  426 (564)
T ss_pred             hhhhhhhcce------------------------------------------------------eeccCchhHHHHHHH-
Confidence            6544443200                                                      000000000000000 


Q ss_pred             ccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHH
Q psy12713        428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL  506 (551)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  506 (551)
                                 .+..+...|.|......... +...|.+..++..+++.+...|+ ...+..+|.++...+.+++|.+.|
T Consensus       427 -----------~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y  494 (564)
T KOG1174|consen  427 -----------AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYY  494 (564)
T ss_pred             -----------HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHH
Confidence                       01111122222222222222 45569999999999999999885 678899999999999999999999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHHH
Q psy12713        507 DKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       507 ~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      ..|+.+||++..+...+-.+-..
T Consensus       495 ~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  495 YKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHHhcCccchHHHHHHHHHHhc
Confidence            99999999999988777665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.90  E-value=1.1e-23  Score=191.73  Aligned_cols=260  Identities=20%  Similarity=0.239  Sum_probs=98.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      .+|.+++..| ++++|++.+.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .  
T Consensus        13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--   88 (280)
T PF13429_consen   13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c--
Confidence            3688888888 888888888655443  477788888888888888888888888888888877766666555533 2  


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCCH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~  296 (551)
                          ..+++++|+..+.++.+..+ ++..+...+.++...|+++++...++++....  +.++..+..+|.++.+ .|++
T Consensus        89 ----~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~  162 (280)
T PF13429_consen   89 ----QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-LGDP  162 (280)
T ss_dssp             ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHH
T ss_pred             ----cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCH
Confidence                33888888888887776553 45666677777888888888888888866544  5667778888888666 8888


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713        297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV  376 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (551)
                      ++|+.+++++++.+|+++.+...++.++...|+.+++...++......|+++.++..++                     
T Consensus       163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la---------------------  221 (280)
T PF13429_consen  163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA---------------------  221 (280)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH---------------------
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH---------------------
Confidence            88888888888888888888888888888888888877777776666555544322221                     


Q ss_pred             CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713        377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES  456 (551)
Q Consensus       377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (551)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (280)
T PF13429_consen  222 --------------------------------------------------------------------------------  221 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713        457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  511 (551)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  511 (551)
                      ..+...|++++|+.+|+++++.+|+++.++..+|.++...|+.++|...+++++.
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1144557788888888888888888888888888888888888888888887765

>PRK12370 invasion protein regulator; Provisional

Probab=99.90  E-value=7e-21  Score=188.81  Aligned_cols=265  Identities=14%  Similarity=0.098  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHh---hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---------CchHHHHHHHHHhhcCC
Q psy12713         62 LDLLSKAKRAFE---HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS---------QSTKAIEDLTQLVEDTS  129 (551)
Q Consensus        62 ~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~  129 (551)
                      ..++.+|...+.   .+++++|+..|+++++.+|+   ++.++..+|.++...+         ++++|+..++++++++|
T Consensus       259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP  335 (553)
T PRK12370        259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH  335 (553)
T ss_pred             HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence            345666665443   45678899999999999998   8888888888876443         36889999999999998


Q ss_pred             CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        130 VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       130 ~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      +++.    ++..+|.++...| ++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+.....
T Consensus       336 ~~~~----a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        336 NNPQ----ALGLLGLINTIHS-EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             CCHH----HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            8844    5566888888888 9999999999999999999999999999999999999999999999999998877665


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      .++.+++..      |++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|........++..
T Consensus       411 ~~~~~~~~~------g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~  484 (553)
T PRK12370        411 TKLWITYYH------TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE  484 (553)
T ss_pred             HHHHHHHhc------cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            556555555      88899999998888775 77788888889999899999999999988888888877788888877


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      +.. .|  ++|...+++.++.....+.-......++.-.|+.+.+.-+ +++.+..
T Consensus       485 ~~~-~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        485 YCQ-NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             Hhc-cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            655 55  4777777766654333332233377788888888888777 6666543

>KOG4162|consensus

Probab=99.90  E-value=8.2e-20  Score=172.08  Aligned_cols=473  Identities=13%  Similarity=0.018  Sum_probs=322.2

Q ss_pred             ccCCCCCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC
Q psy12713         51 LTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT  128 (551)
Q Consensus        51 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  128 (551)
                      +....++...+.........+.-..+.++++-..-..+......  ...+.++-.+.......|+++.+.+.|++++...
T Consensus       274 ~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~  353 (799)
T KOG4162|consen  274 LFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS  353 (799)
T ss_pred             ccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            44444444444444445556666667777765443333221100  1267788888889999999999999999998765


Q ss_pred             CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCC---
Q psy12713        129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQ-IYCLFGQYEEALRNLDKTIALNP---  202 (551)
Q Consensus       129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~---  202 (551)
                      -..    ...|..++.++...| .-..|+...+..+...  |+++..+...+. |....+.+++++.+..+++....   
T Consensus       354 ~~~----~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~  428 (799)
T KOG4162|consen  354 FGE----HERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR  428 (799)
T ss_pred             hhh----HHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh
Confidence            444    456777999999999 9999999999999988  777776666655 45568999999999999998432   


Q ss_pred             --CCHHHHHHHHHHHHHh-----hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q psy12713        203 --NFHVARAQRHFVVHKM-----IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-  274 (551)
Q Consensus       203 --~~~~~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-  274 (551)
                        -.+..+..+|.+|-..     .-..+.....++++.++++++.+|.|+.+.+.++.-|...++.+.|....+++++. 
T Consensus       429 ~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~  508 (799)
T KOG4162|consen  429 SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN  508 (799)
T ss_pred             hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence              1344566666666544     11112244578999999999999999999999999999999999999999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       275 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      ..+++.+|..++.++-. .+++.+|+.+.+.++...|+|.........+-...|+.++|+......+.+-.....+....
T Consensus       509 ~~~~~~~whLLALvlSa-~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~  587 (799)
T KOG4162|consen  509 RGDSAKAWHLLALVLSA-QKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL  587 (799)
T ss_pred             CCccHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence            55668899999999555 99999999999999999999888888888888889999999999888877655444433333


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCcc---------ccCcchhhHHHHh
Q psy12713        355 SLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV---------VMDKADYTQKMTS  425 (551)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  425 (551)
                      ...       ...+.-.......+...+...........+....... ..........         +.....|..+...
T Consensus       588 ~~g-------~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~  659 (799)
T KOG4162|consen  588 DEG-------KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA-GSELKLPSSTVLPGPDSLWYLLQKLWLLAADL  659 (799)
T ss_pred             hhh-------hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc-ccccccCcccccCCCCchHHHHHHHHHHHHHH
Confidence            211       1111111111111122222222222222222111100 0000001000         1111222233333


Q ss_pred             hhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHH
Q psy12713        426 ILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR  504 (551)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  504 (551)
                      +...+.....-.....+-...+.....+...|. +...|+.++|...|..++.++|+++.+...+|.++...|+..-|..
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            322221111111111122223334445555555 7788999999999999999999999999999999999999888888


Q ss_pred             --HHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713        505 --NLDKTIALNPNFHVARAQRHFVWTSTLAELMAF  537 (551)
Q Consensus       505 --~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  537 (551)
                        .+..+++++|.|+++|+.+|.++...|+-..|.
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence              999999999999999999999999999877553

>KOG1156|consensus

Probab=99.89  E-value=4.7e-19  Score=163.79  Aligned_cols=416  Identities=14%  Similarity=0.131  Sum_probs=296.3

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .-..+|.++...+..++|...++..+.+++..|+   +.+.+...|..+..+|+-++|......++..++.+.    .+|
T Consensus         6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----vCw   78 (700)
T KOG1156|consen    6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----VCW   78 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccc----hhH
Confidence            4467899999999999999999999999999999   999999999999999999999999999999888874    367


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++.... +|++|+++|+.|+...|+|..++..++.+..++++++.....-.+.++..|.....|...+...... 
T Consensus        79 Hv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~-  156 (700)
T KOG1156|consen   79 HVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL-  156 (700)
T ss_pred             HHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-
Confidence            77999999999 9999999999999999999999999999999999999999999999999999999999999888888 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTH---SNV-----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ  291 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  291 (551)
                           |++..|....+...+..   |+.     .........+....|.+++|.+.+..--..--+........+.+++.
T Consensus       157 -----g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k  231 (700)
T KOG1156|consen  157 -----GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK  231 (700)
T ss_pred             -----HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence                 99999999888877655   332     24455667777888998888887765433322334455566777666


Q ss_pred             hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcccccCHHHHHHH-HhHH--HHHHHHHHHH
Q psy12713        292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALPLARDEAELSHI-YSLR--DAAIAQMKVC  367 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~-~~~~--~~~~~~~~~~  367 (551)
                       .+++++|...+...+..+|++...+..+-.++..-.+--+++ ..|...-+..|........ +...  ..........
T Consensus       232 -l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky  310 (700)
T KOG1156|consen  232 -LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY  310 (700)
T ss_pred             -HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence             999999999999999999999888888877776334444455 6666665555544332211 0000  0000000000


Q ss_pred             HHhccc---cCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCc--cccCCCcchh
Q psy12713        368 ERYNIK---KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY--EIIPGDPTKT  442 (551)
Q Consensus       368 ~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  442 (551)
                      -.-...   +.+......+..... ....+.+                         .+..+.....-  .....+-.. 
T Consensus       311 L~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~-------------------------Lvt~y~~~L~~~~~f~~~D~~~-  363 (700)
T KOG1156|consen  311 LRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEK-------------------------LVTSYQHSLSGTGMFNFLDDGK-  363 (700)
T ss_pred             HHHHhhcCCCchhhhhHHHHhchh-HhHHHHH-------------------------HHHHHHhhcccccCCCcccccc-
Confidence            000000   111111111111111 0001111                         00111100000  000000000 


Q ss_pred             hhhhhhhcc-chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchH
Q psy12713        443 IEESEKYGN-LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  517 (551)
Q Consensus       443 ~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  517 (551)
                      .+......+ .+.....+...|+++.|..+++.|+...|..++.|...|+++...|++++|..++..+.++|-.|.
T Consensus       364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            111112222 223333367789999999999999999999999999999999999999999999999999986553

>KOG0550|consensus

Probab=99.89  E-value=7e-21  Score=166.33  Aligned_cols=278  Identities=20%  Similarity=0.289  Sum_probs=241.5

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+......|..++...+|..|+..+..+++..|+   ++..|...+.++...|++++|....++.+++.|..+.    .
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~  119 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----G  119 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----c
Confidence            45677888899999999999999999999999999   8999999999999999999999999999999998765    3


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH------------hcC------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAE------------KVD------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~------------~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      ....+.++...+ +..+|...++..-            .+-      |.-..+...-+.|+...|++++|...--..+++
T Consensus       120 ~~r~~~c~~a~~-~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl  198 (486)
T KOG0550|consen  120 QLREGQCHLALS-DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL  198 (486)
T ss_pred             ccchhhhhhhhH-HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence            444888888888 7777775554211            111      222345667789999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH------------HHHHHHHHHHHhccCHHHHHHHH
Q psy12713        201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV------------EACTLFAQVLVDQEDFDGAEEYF  268 (551)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~  268 (551)
                      ++.+..+.+..+.+++..      ++.+.|+..|++++..+|+..            ..+..-|.-.++.|++.+|.+.|
T Consensus       199 d~~n~~al~vrg~~~yy~------~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y  272 (486)
T KOG0550|consen  199 DATNAEALYVRGLCLYYN------DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY  272 (486)
T ss_pred             ccchhHHHHhcccccccc------cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence            999999999999777766      999999999999999999864            45677899999999999999999


Q ss_pred             HHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        269 NRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       269 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      ..+|.++|++    ...|.+++.+..+ .|+..+|+...+.++.++|....++...|.++..+++|++|++.|+++++..
T Consensus       273 teal~idP~n~~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  273 TEALNIDPSNKKTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHhhcCCccccchhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999987    4468889999777 9999999999999999999999999999999999999999999999999987


Q ss_pred             cCHHHHHH
Q psy12713        345 RDEAELSH  352 (551)
Q Consensus       345 ~~~~~~~~  352 (551)
                      .+ .++..
T Consensus       352 ~s-~e~r~  358 (486)
T KOG0550|consen  352 KD-CEIRR  358 (486)
T ss_pred             cc-cchHH
Confidence            66 44433

>KOG4162|consensus

Probab=99.89  E-value=8.9e-20  Score=171.85  Aligned_cols=344  Identities=17%  Similarity=0.159  Sum_probs=194.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVN  137 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  137 (551)
                      ++..+=.....+...|+|+.+.+.|++++...-.   ..+.|+.++.++...|.-..|+...+......  |.++..   
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~---  395 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV---  395 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH---
Confidence            3444445566666677777777777777665554   56666666666666666666666666666655  333221   


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhcC
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDP-----NVADSYYQRGQIYCLFG-----------QYEEALRNLDKTIALN  201 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~  201 (551)
                      .+..-..|....+ ..++++.+..+++....     -.+.++..+|.+|..+-           ...+++..++++++.+
T Consensus       396 ~Lmasklc~e~l~-~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  396 LLMASKLCIERLK-LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHhchh-hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            1111222233333 44444444444444111     11333444444433221           1234444444444444


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      |.++.+.+.++.-+...      ++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++...|+|..
T Consensus       475 ~~dp~~if~lalq~A~~------R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~  548 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQ------RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV  548 (799)
T ss_pred             CCCchHHHHHHHHHHHH------HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence            44444444444333333      4444444444444444 2223444444444444444444444444444433333211


Q ss_pred             --------------------------------------------------------------------------------
Q psy12713        281 --------------------------------------------------------------------------------  280 (551)
Q Consensus       281 --------------------------------------------------------------------------------  280 (551)
                                                                                                      
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence                                                                                            


Q ss_pred             -----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        281 -----------------------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       281 -----------------------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                                             .|...+..+.. .++.++|..++.++-.++|..+..|+..|.++...|++.+|...|
T Consensus       629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~-~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL-SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             cccccCcccccCCCCchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence                                   23333444333 566666666666666666666666666666666666666666666


Q ss_pred             HHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcc
Q psy12713        338 NKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA  417 (551)
Q Consensus       338 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (551)
                      ..++.++|+++.....++.                                                             
T Consensus       708 ~~Al~ldP~hv~s~~Ala~-------------------------------------------------------------  726 (799)
T KOG4162|consen  708 LVALALDPDHVPSMTALAE-------------------------------------------------------------  726 (799)
T ss_pred             HHHHhcCCCCcHHHHHHHH-------------------------------------------------------------
Confidence            6666666666553322221                                                             


Q ss_pred             hhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHH--hhHHhhccCCCchHHHhhhhhHHHH
Q psy12713        418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFA--DLDEAEKVDPNVADSYYQRGQIYCL  495 (551)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~  495 (551)
                                                              .+.+.|+..-|..  .+..+++++|.++++|+.+|.++.+
T Consensus       727 ----------------------------------------~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  727 ----------------------------------------LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             ----------------------------------------HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence                                                    1334455555666  9999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCchHH
Q psy12713        496 FGQYEEALRNLDKTIALNPNFHV  518 (551)
Q Consensus       496 ~g~~~~A~~~~~~al~~~p~~~~  518 (551)
                      .|+.++|.++|..|+++.+.+|.
T Consensus       767 ~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  767 LGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             ccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999998874

>KOG1129|consensus

Probab=99.88  E-value=7.7e-21  Score=160.92  Aligned_cols=268  Identities=16%  Similarity=0.132  Sum_probs=236.4

Q ss_pred             HHHhhhcHHHHHHHHHHHhhcC---CCc----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         70 RAFEHEDYLTAIRHCTEEIEST---SSN----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        70 ~~~~~g~~~~A~~~~~~~l~~~---~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      .++...|...|-..+...++..   |..    ..+..--..+|.||+++|-+.+|.+.++.+++..|.     ...+..+
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-----~dTfllL  262 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-----PDTFLLL  262 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-----hhHHHHH
Confidence            4556778888877776665432   211    234445568999999999999999999999998765     3456669


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      +.+|.... +...|+..+.+.+...|.+...+...+.++..++++++|.++|+.+++..|.+.++..-++..++..    
T Consensus       263 skvY~rid-QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~----  337 (478)
T KOG1129|consen  263 SKVYQRID-QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYD----  337 (478)
T ss_pred             HHHHHHhc-cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccC----
Confidence            99999999 9999999999999999999999999999999999999999999999999999999887777555555    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                        ++++-|+.+|++++++.-.+++.+.++|.|.+..++++-++..|++++....   .-.++|+++|.+... .|++.-|
T Consensus       338 --~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA  414 (478)
T KOG1129|consen  338 --NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLA  414 (478)
T ss_pred             --CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHH
Confidence              9999999999999999999999999999999999999999999999998643   236799999999776 9999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+.
T Consensus       415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            999999999999999999999999999999999999999999999986654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.88  E-value=3.6e-19  Score=169.20  Aligned_cols=279  Identities=17%  Similarity=0.164  Sum_probs=215.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .....+..|...+..|||++|.+...+.-...+.   ....+...+.+....|+++.|..++.++.+..|++...   ..
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~---~~  156 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP---VE  156 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH---HH
Confidence            4456788899999999999999888876665443   23334444666699999999999999999988876422   22


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH-FVVHKM  218 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~  218 (551)
                      ...+.++...| ++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.....+- ..+...
T Consensus       157 l~~a~l~l~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l  235 (398)
T PRK10747        157 ITRVRIQLARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL  235 (398)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            23588999999 9999999999999999999999999999999999999999999999888766544333111 111110


Q ss_pred             -hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713        219 -IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD  297 (551)
Q Consensus       219 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (551)
                       .......+.+...+.++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+  . .++++
T Consensus       236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~-~~~~~  311 (398)
T PRK10747        236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--K-TNNPE  311 (398)
T ss_pred             HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--c-CCChH
Confidence             00111123344455555555566778999999999999999999999999999984 4455555445543  3 58999


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      +++..+++.++..|+++..+..+|.++...|++++|.++|+++++..|++..
T Consensus       312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            9999999999999999999999999999999999999999999988888654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=4.1e-20  Score=168.06  Aligned_cols=222  Identities=18%  Similarity=0.221  Sum_probs=123.1

Q ss_pred             CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q psy12713        113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR  192 (551)
Q Consensus       113 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  192 (551)
                      +.+.++..+.+++...|.++......++.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44555555555555444444444445555666666666 66666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                      .|+++++++|++..++..+|.+++..      |++++|+..++++++.+|+++... ....+....+++++|+..+.+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~------g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYG------GRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHH
Confidence            66666666666666666666555555      666666666666666666554211 11122334556777777776555


Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCCHHHH--HHHHH----HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        273 RVDPENASLYVHRAMLMLQARGNVDEA--IKLIE----KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~~~A--~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      ...+.....   .+.+.+. .|+..++  ...+.    ...+..|...++|+.+|.++...|++++|+.+|++++..+|.
T Consensus       193 ~~~~~~~~~---~~~~~~~-lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~  268 (296)
T PRK11189        193 EKLDKEQWG---WNIVEFY-LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY  268 (296)
T ss_pred             hhCCccccH---HHHHHHH-ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            432222111   2223233 4444322  22222    122344555677777777777777777777777777777753

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=4.4e-20  Score=183.17  Aligned_cols=190  Identities=14%  Similarity=0.100  Sum_probs=138.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG---------QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      .+++|+..|+++++.+|+++.++..+|.++...+         ++++|+..++++++++|++..++..+|.++...    
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~----  351 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH----  351 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----
Confidence            4667777777777777777777777777665432         367777777777777777777777777666655    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                        |++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+++. .|++++|+..
T Consensus       352 --g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~  428 (553)
T PRK12370        352 --SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRL  428 (553)
T ss_pred             --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHH
Confidence              7777777777777777777777777777777777777777777777777777776665555555555 6777777777


Q ss_pred             HHHHHhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        303 IEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       303 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +++++... |+++.++..+|.++...|++++|...+.++....|.+.
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~  475 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL  475 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence            77777664 66677777777777777777777777777666655543

>TIGR00540 hemY_coli hemY protein

Probab=99.88  E-value=4.6e-19  Score=169.54  Aligned_cols=199  Identities=11%  Similarity=0.104  Sum_probs=98.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhhc
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKMIV  220 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~  220 (551)
                      .|......| +++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. ......+.++...  
T Consensus        90 ~glla~~~g-~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~--  166 (409)
T TIGR00540        90 EALLKLAEG-DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ--  166 (409)
T ss_pred             HHHHHHhCC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC--
Confidence            344444455 555555555555555554444444555555555555555555555555544443 2333334333333  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHhcCCH
Q psy12713        221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV----HRAMLMLQARGNV  296 (551)
Q Consensus       221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~  296 (551)
                          |+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+....++....    ......+. .+..
T Consensus       167 ----~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~-~~~~  241 (409)
T TIGR00540       167 ----NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD-EAMA  241 (409)
T ss_pred             ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-HHHH
Confidence                55555555555555555555555555555555555555555555555544332222111    11111111 2333


Q ss_pred             HHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        297 DEAIKLIEKAISIDK----SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +++.+.+.++.+..|    +++..+..++..+...|++++|.+.++++++..|++.
T Consensus       242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~  297 (409)
T TIGR00540       242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR  297 (409)
T ss_pred             hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence            334445555554444    3555666666666666666666666666666655554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1125|consensus

Probab=99.88  E-value=8e-21  Score=173.46  Aligned_cols=262  Identities=13%  Similarity=0.086  Sum_probs=206.0

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      +.-+...-|..|..+++.|+..+|.-.|+.++..+|.   ++++|..||.+....++-..|+..++++++++|++    .
T Consensus       281 p~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N----l  353 (579)
T KOG1125|consen  281 PYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTN----L  353 (579)
T ss_pred             cccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----H
Confidence            3345556789999999999999999999999999999   99999999999999999999999999999999999    5


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH-------HHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ-------RGQIYCLFGQYEEALRNLDKTIALNP--NFHVA  207 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~  207 (551)
                      .++..||.+|...| .-.+|+.++.+.+...|.....-..       ...-......+..-.+.|-.+....|  .++++
T Consensus       354 eaLmaLAVSytNeg-~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv  432 (579)
T KOG1125|consen  354 EALMALAVSYTNEG-LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV  432 (579)
T ss_pred             HHHHHHHHHHhhhh-hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence            57777999999999 9999999999999887754211100       00001111123344556666666666  67788


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM  287 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  287 (551)
                      ...+|.+++..      |++++|+.+|+.++...|++...|+.+|-.+....+.++|+..|++|+++.|....+++++|.
T Consensus       433 Q~~LGVLy~ls------~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  433 QSGLGVLYNLS------GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI  506 (579)
T ss_pred             HhhhHHHHhcc------hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence            88888777776      888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHhCCHHHH
Q psy12713        288 LMLQARGNVDEAIKLIEKAISIDKSC----------MFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       288 ~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A  333 (551)
                      .++. .|.|++|.++|-.++.+.+.+          ..+|..|-.++...++.+-+
T Consensus       507 S~mN-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  507 SCMN-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             hhhh-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            8777 888888888888888775441          23555555555555555533

>KOG1129|consensus

Probab=99.88  E-value=2e-21  Score=164.40  Aligned_cols=244  Identities=15%  Similarity=0.110  Sum_probs=226.3

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      -..|.++++.|-+.+|.+.++..+...|    .++.+..++.+|.+..+...|+..+.+.++..|.+..    .+..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT----~l~g~AR  298 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT----YLLGQAR  298 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh----hhhhhHH
Confidence            4679999999999999999999999999    7899999999999999999999999999999999844    4455999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR  224 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (551)
                      ++..++ ++++|.++|+.+++.+|.+.++.-.+|.-|+--++.+-|+.+|++.+++.-.+++.+.++|.|.+..      
T Consensus       299 i~eam~-~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya------  371 (478)
T KOG1129|consen  299 IHEAME-QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA------  371 (478)
T ss_pred             HHHHHH-hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh------
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999998888      


Q ss_pred             hHHHHHHHHHHHHHHhCC--C-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHS--N-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK  301 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~--~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  301 (551)
                      ++++-++..|++++....  + -.++|+++|.+....|++..|..+|+-++..++++.+++.++|.+-.+ .|+.++|..
T Consensus       372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r-~G~i~~Ars  450 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR-SGDILGARS  450 (478)
T ss_pred             cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh-cCchHHHHH
Confidence            999999999999998653  2 368999999999999999999999999999999999999999999776 999999999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHH
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIE  324 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~  324 (551)
                      +++.+-...|.-.+..++++.+-
T Consensus       451 ll~~A~s~~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  451 LLNAAKSVMPDMAEVTTNLQFMS  473 (478)
T ss_pred             HHHHhhhhCccccccccceeEEe
Confidence            99999999998877777766543

>KOG1174|consensus

Probab=99.87  E-value=1.3e-19  Score=158.40  Aligned_cols=270  Identities=16%  Similarity=0.103  Sum_probs=236.9

Q ss_pred             HHHHHHHHhhhcH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDY--LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        65 ~~~a~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      ..++...+..++.  .-+..++-.-...-|.   +...+..+|.+++..|++++|+..|+++..++|...    .+.-..
T Consensus       200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~---NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Y  272 (564)
T KOG1174|consen  200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRC---NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLY  272 (564)
T ss_pred             HHHHHHHHHhcccchhhhHHHHHHhhccCCc---cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHH
Confidence            3445555545544  4455556666677787   999999999999999999999999999999999874    444558


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      |..+...| +++.-.......+........-|+.-+...+..++++.|+.+-+++++.+|.+..+++..|..+..+    
T Consensus       273 a~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~----  347 (564)
T KOG1174|consen  273 AVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL----  347 (564)
T ss_pred             HHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc----
Confidence            88888999 9999988888899888888888999999999999999999999999999999999999999777777    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCCHHHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNVDEAIK  301 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~A~~  301 (551)
                        |+.++|+-.|+.+....|.+.+.|..+..+|...|++.+|...-+.++...|.+...+..+| .+++..-.--++|..
T Consensus       348 --~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk  425 (564)
T KOG1174|consen  348 --ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK  425 (564)
T ss_pred             --cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence              99999999999999999999999999999999999999999999999999999999998886 554443445688999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ++++++.+.|....+-..++.++...|.+++++..+++.+...|+..
T Consensus       426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~  472 (564)
T KOG1174|consen  426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN  472 (564)
T ss_pred             HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH
Confidence            99999999999999999999999999999999999999999888753

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.87  E-value=2e-19  Score=163.54  Aligned_cols=240  Identities=15%  Similarity=0.123  Sum_probs=188.4

Q ss_pred             hhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC
Q psy12713         74 HEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD  152 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  152 (551)
                      .+..+.++..+.+++...|.+ ...+..++.+|.++...|++++|+..|+++++.+|+++    .++..+|.++...| +
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g-~  113 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAG-N  113 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCC-C
Confidence            357788999999999755432 23578899999999999999999999999999999984    46777999999999 9


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK  232 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  232 (551)
                      +++|+..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++......       .+....+++++|+.
T Consensus       114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-------~l~~~~~~~~~A~~  186 (296)
T PRK11189        114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-------YLAESKLDPKQAKE  186 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987421111       11223478999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH--HHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA--EEYFNR----SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A--~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      .+.+.....+...  |. .+.+....|+...+  ...+.+    ..+..|..+.+|+.+|.++.. .|++++|+.+|+++
T Consensus       187 ~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~-~g~~~~A~~~~~~A  262 (296)
T PRK11189        187 NLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS-LGDLDEAAALFKLA  262 (296)
T ss_pred             HHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            9988775543322  22 35555566766443  322222    234556677899999999776 99999999999999


Q ss_pred             HhcCc-CCHHHHHHHHHHHHHhCC
Q psy12713        307 ISIDK-SCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       307 ~~~~~-~~~~~~~~l~~~~~~~g~  329 (551)
                      ++.+| +..+..+.+..+....++
T Consensus       263 l~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        263 LANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHhh
Confidence            99996 556666666666555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.3e-18  Score=146.02  Aligned_cols=286  Identities=13%  Similarity=0.102  Sum_probs=244.3

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      .+.-|..|..++-..+.++|+..|-.+++.+|.   ..++...+|..+...|..+.|+..-+..+....-...-...++.
T Consensus        35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~  111 (389)
T COG2956          35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ  111 (389)
T ss_pred             ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            445677899999999999999999999999998   99999999999999999999999998887754333444566889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-h
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-I  219 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~  219 (551)
                      .+|.-|+..| -++.|...|........--..+...+..+|....+|++|++..++..++.+......+  +..+..+ .
T Consensus       112 qL~~Dym~aG-l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--AqfyCELAq  188 (389)
T COG2956         112 QLGRDYMAAG-LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--AQFYCELAQ  188 (389)
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--HHHHHHHHH
Confidence            9999999999 9999999999988765556789999999999999999999999999999887654332  2222222 4


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~  298 (551)
                      .+....+.+.|+..+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|+. +.+.-.+..+|-+ .|+.++
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~  267 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE  267 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence            44455899999999999999999999999999999999999999999999999999987 4566677777655 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      .+..+.++.+..++ +.+-..++.+-....-.+.|..++.+-+...|+-.....+.
T Consensus       268 ~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~  322 (389)
T COG2956         268 GLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM  322 (389)
T ss_pred             HHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence            99999999998887 56777788888888888999999999999999876655444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.86  E-value=3.6e-19  Score=144.09  Aligned_cols=211  Identities=18%  Similarity=0.198  Sum_probs=183.7

Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      .....+.+.+|..|+..| ++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|
T Consensus        32 ~~aa~arlqLal~YL~~g-d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          32 NEAAKARLQLALGYLQQG-DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            344567777899999999 9999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        213 FVVHKMIVPGDRERVEQSLKEFRNFVDT--HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML  290 (551)
Q Consensus       213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  290 (551)
                      ..+...      |++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++
T Consensus       111 ~FLC~q------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         111 AFLCAQ------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             HHHHhC------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence            544444      8999999999998874  35567889999999999999999999999999999999999999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       291 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                      . .|++-.|..++++.....+-....+.....+-...|+-+.|-++=.+.....|...+..
T Consensus       185 ~-~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q  244 (250)
T COG3063         185 K-AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ  244 (250)
T ss_pred             h-cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            7 89999999999999888888888888888899999999999998888888888877653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=3.5e-18  Score=162.51  Aligned_cols=281  Identities=10%  Similarity=0.032  Sum_probs=154.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhh
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR-GQIYCLFGQYEEALRNLDKTIALNPNFHVAR-AQRHFVVHKMI  219 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~  219 (551)
                      .|......| ++++|.+...+.-...+ ++..++.+ +......|+++.|..++.++.+..|++.... ...+..+... 
T Consensus        90 ~gl~a~~eG-d~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-  166 (398)
T PRK10747         90 QALLKLAEG-DYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-  166 (398)
T ss_pred             HHHHHHhCC-CHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-
Confidence            444444455 66666655554433322 23333333 4444666666666666666666655553222 2224333333 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV--------HRAMLMLQ  291 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~  291 (551)
                           |++++|...++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++....        .+......
T Consensus       167 -----g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        167 -----NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             -----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 66666666666666666666666666666666666666666666665555444332111        11111011


Q ss_pred             hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713        292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN  371 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (551)
                       ..+.+.....++......|+++.+...++..+...|+.++|.+.++++++..|+ +.+...+..               
T Consensus       242 -~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~---------------  304 (398)
T PRK10747        242 -DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPR---------------  304 (398)
T ss_pred             -hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhh---------------
Confidence             222333333344333344556667777777777777777777777777664333 222111110               


Q ss_pred             cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713        372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN  451 (551)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (551)
                                                                                                      
T Consensus       305 --------------------------------------------------------------------------------  304 (398)
T PRK10747        305 --------------------------------------------------------------------------------  304 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713        452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL  531 (551)
Q Consensus       452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  531 (551)
                              ...++++++++..++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|
T Consensus       305 --------l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g  375 (398)
T PRK10747        305 --------LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLH  375 (398)
T ss_pred             --------ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcC
Confidence                    01145666777777777777777777777777777777777777777777777776644 445666666666


Q ss_pred             hhhhh
Q psy12713        532 AELMA  536 (551)
Q Consensus       532 ~~~~a  536 (551)
                      +..+|
T Consensus       376 ~~~~A  380 (398)
T PRK10747        376 KPEEA  380 (398)
T ss_pred             CHHHH
Confidence            66555

>KOG0550|consensus

Probab=99.86  E-value=5.4e-20  Score=160.84  Aligned_cols=290  Identities=18%  Similarity=0.246  Sum_probs=209.8

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      ++-....|..+++..+|.+|+..+..+++..|++    +..|.+.+.+++..+ ++++|....++.+++.|..+..+...
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~----a~yy~nRAa~~m~~~-~~~~a~~dar~~~r~kd~~~k~~~r~  123 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN----ASYYSNRAATLMMLG-RFEEALGDARQSVRLKDGFSKGQLRE  123 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc----hhhhchhHHHHHHHH-hHhhcccchhhheecCCCccccccch
Confidence            3444555556666666666666666666666655    334444666666666 66666666666666666666666666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCcHHHHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNVVEACTLFAQV  254 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~  254 (551)
                      +.++...++..+|...++        +..+                 +....|+..+++.+..+   |....+-..-+.+
T Consensus       124 ~~c~~a~~~~i~A~~~~~--------~~~~-----------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~c  178 (486)
T KOG0550|consen  124 GQCHLALSDLIEAEEKLK--------SKQA-----------------YKAANALPTLEKLAPSHSREPACFKAKLLKAEC  178 (486)
T ss_pred             hhhhhhhHHHHHHHHHhh--------hhhh-----------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence            666666666555555554        0000                 11122233333333222   3334566677899


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH------------HHHHHHHH
Q psy12713        255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------------FAYETLGT  322 (551)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~  322 (551)
                      +...|++++|...--..+++++.+..+++..|.+++. .++.+.|+..|++++.++|++.            ..+..-|.
T Consensus       179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999777 9999999999999999999863            45667889


Q ss_pred             HHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhc
Q psy12713        323 IEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIII  402 (551)
Q Consensus       323 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  402 (551)
                      -.++.|++..|.+.|..++.++|++......+.                                               
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY-----------------------------------------------  290 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY-----------------------------------------------  290 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccchhHHHH-----------------------------------------------
Confidence            999999999999999999999999765322211                                               


Q ss_pred             cccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCc
Q psy12713        403 RPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNV  482 (551)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  482 (551)
                                                                        ++++.....+|+..+|+..++.+++++|..
T Consensus       291 --------------------------------------------------~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  291 --------------------------------------------------GNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             --------------------------------------------------HHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence                                                              111222445589999999999999999999


Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  515 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  515 (551)
                      ..++...|.|+..+++|++|++.|+++.+...+
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999998766

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.85  E-value=3.4e-18  Score=175.85  Aligned_cols=388  Identities=12%  Similarity=0.029  Sum_probs=265.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +...+-.....+...++++.|..++..+....-.  .+...+..+..+|.+.|++++|.+.|++..+  |+     ..+|
T Consensus       122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~-----~~t~  192 (697)
T PLN03081        122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RN-----LASW  192 (697)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC-----eeeH
Confidence            3444555555556666666666666666554321  1455566666666666666666666666543  21     2244


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------------------------CCChhHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVD------------------------------------PNVADSYYQRGQIYCL  183 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~la~~~~~  183 (551)
                      ..+...|.+.| ++++|+..|+++....                                    ..+..++..+...|.+
T Consensus       193 n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k  271 (697)
T PLN03081        193 GTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK  271 (697)
T ss_pred             HHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence            44666666666 6666666666665432                                    1234466778899999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHH
Q psy12713        184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFD  262 (551)
Q Consensus       184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  262 (551)
                      .|++++|...|++..   +.+...|..+...+...      |++++|+..|+++.... ..+...+..+...+.+.|+++
T Consensus       272 ~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~------g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        272 CGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH------GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE  342 (697)
T ss_pred             CCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence            999999999998764   45677788888666666      99999999999987653 335668889999999999999


Q ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        263 GAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       263 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      +|.+.+..+++.. +.+..++..+...|.+ .|++++|...|+++.+   .+..+|..+...|.+.|+.++|++.|++..
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSK-WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHH-CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998875 5566778888888777 9999999999998754   356789999999999999999999999987


Q ss_pred             c--cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchh
Q psy12713        342 P--LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADY  419 (551)
Q Consensus       342 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (551)
                      +  ..|+.......+..+..                        .+..+.+.+.+..-..                    
T Consensus       419 ~~g~~Pd~~T~~~ll~a~~~------------------------~g~~~~a~~~f~~m~~--------------------  454 (697)
T PLN03081        419 AEGVAPNHVTFLAVLSACRY------------------------SGLSEQGWEIFQSMSE--------------------  454 (697)
T ss_pred             HhCCCCCHHHHHHHHHHHhc------------------------CCcHHHHHHHHHHHHH--------------------
Confidence            6  45665543333322200                        0001111111111000                    


Q ss_pred             hHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCH
Q psy12713        420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY  499 (551)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  499 (551)
                                 .....|           ...........+...|++++|.+.+++.- ..| +..+|..+...+...|+.
T Consensus       455 -----------~~g~~p-----------~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~  510 (697)
T PLN03081        455 -----------NHRIKP-----------RAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNL  510 (697)
T ss_pred             -----------hcCCCC-----------CccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCc
Confidence                       000000           00111112223566788999999887652 334 456788888889999999


Q ss_pred             HHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        500 EEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       500 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      +.|...+++.+++.|++...|..+..+|...|+..+|..
T Consensus       511 ~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            999999999999999998899999999999888776654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.85  E-value=8.2e-19  Score=156.50  Aligned_cols=201  Identities=20%  Similarity=0.245  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ...+..+|.++...| ++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus        31 ~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQG-DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            456667777787777 8888888888887777777777777888888888888888888888877777777777777666


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTH--SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR  293 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  293 (551)
                      ...      |++++|+..+++++...  +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.+++. .
T Consensus       110 ~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~  182 (234)
T TIGR02521       110 CQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-R  182 (234)
T ss_pred             HHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-c
Confidence            665      78888888888877643  44566788889999999999999999999999999888888899988777 8


Q ss_pred             CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus       183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            999999999999988888888888888999999999999988887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125|consensus

Probab=99.85  E-value=6e-20  Score=167.82  Aligned_cols=239  Identities=17%  Similarity=0.175  Sum_probs=206.2

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      +..|..+++.|+..+|.-.|+.+++.+|.+    +.+|..||.+....+ +-..|+..++++++++|++.+++..||..|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h----aeAW~~LG~~qaENE-~E~~ai~AL~rcl~LdP~NleaLmaLAVSy  363 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH----AEAWQKLGITQAENE-NEQNAISALRRCLELDPTNLEALMALAVSY  363 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHH----HHHHHHhhhHhhhcc-chHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            567999999999999999999999999998    778888999999999 999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhc
Q psy12713        182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVDQ  258 (551)
Q Consensus       182 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~  258 (551)
                      ...|.-.+|+.++.+=+...|........--...... ........+..-.+.|-.+....|  .++++...||.+|...
T Consensus       364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls  443 (579)
T KOG1125|consen  364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS  443 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence            9999999999999999887765432111000000000 012233456667778888888888  7899999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      |+|++|+.+|+.++...|++...|..+|..+.. ..+..+|+..|++++++.|....++++||..+..+|.|++|+++|-
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999554 7889999999999999999999999999999999999999999999


Q ss_pred             HhcccccC
Q psy12713        339 KALPLARD  346 (551)
Q Consensus       339 ~a~~~~~~  346 (551)
                      .|+.+.+.
T Consensus       523 ~AL~mq~k  530 (579)
T KOG1125|consen  523 EALSMQRK  530 (579)
T ss_pred             HHHHhhhc
Confidence            99998765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=8.1e-19  Score=142.04  Aligned_cols=209  Identities=17%  Similarity=0.129  Sum_probs=186.4

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ......+.+|..|+..|++..|...++++|+.+|+   ...+|..++.+|...|+.+.|.+.|+++++++|++.+    +
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd----V  105 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD----V  105 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----h
Confidence            35688899999999999999999999999999999   9999999999999999999999999999999999955    5


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      +.+.|..++.+| ++++|...|++++..  .|..+..+-++|.|..+.|+++.|..+|+++++++|+.+.....++..++
T Consensus       106 LNNYG~FLC~qg-~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         106 LNNYGAFLCAQG-RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             hhhhhHHHHhCC-ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence            566999999999 999999999999974  45567899999999999999999999999999999999999999997777


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL  281 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (551)
                      ..      |++..|...+++.....+-..+.+....++-...|+-+.+-.+=.+.....|.....
T Consensus       185 ~~------~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         185 KA------GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             hc------ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            77      999999999998888888777887777888888898888888877777788877654

>KOG1127|consensus

Probab=99.84  E-value=4e-18  Score=164.57  Aligned_cols=407  Identities=14%  Similarity=0.061  Sum_probs=285.5

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      .+...|...|-+++.+++.-    ..++..+|.+|.... +...|..+|.++.++++.+..++-..+..|....+++.|.
T Consensus       472 K~~~~al~ali~alrld~~~----apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSL----APAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence            45778999999999998876    456777999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCH--HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        192 RNLDKTIALNPNFH--VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       192 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      .....+-+..|...  ..|..+|      ..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.
T Consensus       547 ~I~l~~~qka~a~~~k~nW~~rG------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~  620 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFACKENWVQRG------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT  620 (1238)
T ss_pred             HHHHHHhhhchHHHHHhhhhhcc------ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence            99777777666432  3444556      556666999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        270 RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      ++..++|.+....+..+.+... .|+|.+|+..+...+......       .+.+.+++..+...|=...|..++++.++
T Consensus       621 kAs~LrP~s~y~~fk~A~~ecd-~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  621 KASLLRPLSKYGRFKEAVMECD-NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             hhHhcCcHhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            9999999999998888888555 999999999999888765433       45556666666666777777777777665


Q ss_pred             cc--------cCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCC--cc
Q psy12713        343 LA--------RDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK--TV  412 (551)
Q Consensus       343 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~  412 (551)
                      ..        -++.-.|...+.......+....       .+......+..........++++ +++..-......  ..
T Consensus       700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-------~vn~h~l~il~~q~e~~~~l~~~-d~l~Lg~~c~~~hlsl  771 (1238)
T KOG1127|consen  700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-------IVNMHYLIILSKQLEKTGALKKN-DLLFLGYECGIAHLSL  771 (1238)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-------chHHHHHHHHHHHHHhcccCcch-hHHHHHHHHhhHHHHH
Confidence            32        22233333333222222222100       00000000000000000000000 000000000000  00


Q ss_pred             ccCcchhhHHHHhhhccC--------CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchH
Q psy12713        413 VMDKADYTQKMTSILNSN--------DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD  484 (551)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  484 (551)
                      ......|...+.++++.-        +...+.......+.+...-..+++..|..-..|++.-|..+|-+.+..+|....
T Consensus       772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~  851 (1238)
T KOG1127|consen  772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHC  851 (1238)
T ss_pred             hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchh
Confidence            111112222222222210        001112222344555555566777777776779999999999999999999999


Q ss_pred             HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        485 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       485 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      .|.++|.++.+..+++-|...|.++..++|.|...|...+.+....|+-.++..
T Consensus       852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~  905 (1238)
T KOG1127|consen  852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLI  905 (1238)
T ss_pred             heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=4e-18  Score=152.03  Aligned_cols=201  Identities=14%  Similarity=0.110  Sum_probs=140.8

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+..++..|..++..|++++|+..+++++..+|.   +..++..+|.++...|++++|+..+++++...|.++.    +
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~  101 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----V  101 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----H
Confidence            34677777888888888888888888888888777   7777778888888888888888888888887776643    4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      +..+|.++...| ++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|++...+..++.++.
T Consensus       102 ~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       102 LNNYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            555777888888 8888888888877643  3445566677777777777777777777777777766666666665555


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR  273 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  273 (551)
                      ..      |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus       181 ~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       181 LR------GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             Hc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            54      6666666666666666555555555666666666666666655554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.83  E-value=4.3e-16  Score=162.01  Aligned_cols=394  Identities=11%  Similarity=0.032  Sum_probs=289.6

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      .+...++..-..+.+.|++++|+.+|+.+...+.- +.+...+..+...+...|..++|...++....  |+     ...
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-----~~T  439 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-----LST  439 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-----HHH
Confidence            45666666667778899999999999998876532 11444555566677889999999999887754  32     346


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVH  216 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~  216 (551)
                      |..+-..+...| +++.|...++.+.+... .+...|..+...|.+.|+.++|.+.|+++.+... .+...|..+...+.
T Consensus       440 yn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        440 FNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            667888889999 99999999999987653 3578899999999999999999999999987653 35677777776666


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENASLYVHRAMLMLQ  291 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~  291 (551)
                      +.      |++++|+..|.++.... ..+...|..+...+.+.|++++|.+.+.++...    .|+ ...+..+...|.+
T Consensus       519 k~------G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k  591 (1060)
T PLN03218        519 RA------GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN  591 (1060)
T ss_pred             HC------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence            66      99999999999997654 234678999999999999999999999998753    444 5667777777666


Q ss_pred             hcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc--ccCHHHHHHHHhHHHHHHHHHHHHH
Q psy12713        292 ARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL--ARDEAELSHIYSLRDAAIAQMKVCE  368 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  368 (551)
                       .|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|...|++....  .|+.......+...   ..      
T Consensus       592 -~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~---~k------  661 (1060)
T PLN03218        592 -AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GH------  661 (1060)
T ss_pred             -CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh------
Confidence             999999999999999876 456789999999999999999999999998875  56533221111110   00      


Q ss_pred             HhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhh
Q psy12713        369 RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEK  448 (551)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (551)
                                     .+....+.+.+..-..                                ....           +.
T Consensus       662 ---------------~G~~eeA~~l~~eM~k--------------------------------~G~~-----------pd  683 (1060)
T PLN03218        662 ---------------AGDLDKAFEILQDARK--------------------------------QGIK-----------LG  683 (1060)
T ss_pred             ---------------CCCHHHHHHHHHHHHH--------------------------------cCCC-----------CC
Confidence                           0011111111111000                                0000           11


Q ss_pred             hccchhhhchhhhhcChhHHHHhhHHhhcc--CCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc--CCchHHHHHHHH
Q psy12713        449 YGNLENESGQKHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFHVARAQRH  524 (551)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~  524 (551)
                      ..........|...|++++|+..|++..+.  .| +...|..+...|.+.|++++|++.|++....  .|+. ..+..+.
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL  761 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILL  761 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Confidence            111222334488899999999999988654  45 5778999999999999999999999988754  4554 4566666


Q ss_pred             HHHHHhhhhhhhhh
Q psy12713        525 FVWTSTLAELMAFS  538 (551)
Q Consensus       525 ~~~~~~~~~~~a~~  538 (551)
                      ..+.+.|+..+|..
T Consensus       762 ~a~~k~G~le~A~~  775 (1060)
T PLN03218        762 VASERKDDADVGLD  775 (1060)
T ss_pred             HHHHHCCCHHHHHH
Confidence            78887777665543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.83  E-value=2.6e-16  Score=163.67  Aligned_cols=256  Identities=11%  Similarity=0.036  Sum_probs=152.0

Q ss_pred             HHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713         70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        70 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      .+...|..++|..+|+....  |    +...+..+-.++...|++++|...++++.+..... .  ...+..+...|.+.
T Consensus       415 ~~~~~g~~~eAl~lf~~M~~--p----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p-D--~~tynsLI~~y~k~  485 (1060)
T PLN03218        415 ACKKQRAVKEAFRFAKLIRN--P----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA-D--CKLYTTLISTCAKS  485 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHcCC--C----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHhC
Confidence            34455666666666665543  4    34556666666666677777777766666543321 1  22445566666666


Q ss_pred             cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        150 ASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      | +.++|...|+++..... .+...|..+...|.+.|++++|+..|.++....- .+...+..+...+.+.      |++
T Consensus       486 G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~------G~~  558 (1060)
T PLN03218        486 G-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS------GAV  558 (1060)
T ss_pred             c-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC------CCH
Confidence            6 67777776666665432 2456666666666667777777766666654321 2344455555444444      666


Q ss_pred             HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTH---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLI  303 (551)
Q Consensus       228 ~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~  303 (551)
                      ++|.+.+.++....   ..+...+..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+ .|++++|+.+|
T Consensus       559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf  637 (1060)
T PLN03218        559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIY  637 (1060)
T ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            77777666665421   1234556666666666677777777766666654 3344555556655454 66677777776


Q ss_pred             HHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        304 EKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       304 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      .++.+.  .|+ ...|..+...+.+.|++++|.+.++.+.+.
T Consensus       638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            666654  233 556666666666667777777666666553

>PLN03077 Protein ECB2; Provisional

Probab=99.82  E-value=8.2e-17  Score=169.79  Aligned_cols=385  Identities=12%  Similarity=0.040  Sum_probs=212.4

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ...+......+...|+.+.|.+++..+++..-.  .+..++..+...|.+.|++++|.+.|++...  | +    ..+|.
T Consensus       288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d----~~s~n  358 (857)
T PLN03077        288 LMTITSVISACELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K-D----AVSWT  358 (857)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----eeeHH
Confidence            334444444455555666666655555544321  1445555555556666666666666555432  1 1    11334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN-FHVARAQRHFVVHK  217 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~  217 (551)
                      .+...|.+.| ++++|+..|+++....  |+ ...+..+-..+...|++++|.+.+..+.+.... +...+..+...+.+
T Consensus       359 ~li~~~~~~g-~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k  436 (857)
T PLN03077        359 AMISGYEKNG-LPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK  436 (857)
T ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            4555555555 6666666665554332  32 223333334455555555555555555544321 22333333333333


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC------------------
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PEN------------------  278 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~------------------  278 (551)
                      .      |++++|.+.|+++.+   .+...|..+...|.+.|+.++|+..|++..... |+.                  
T Consensus       437 ~------g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~  507 (857)
T PLN03077        437 C------KCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC  507 (857)
T ss_pred             c------CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence            3      555555555554322   223345555555555555555555555554321 221                  


Q ss_pred             ----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        279 ----------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       279 ----------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                                      ......+...|.+ .|+.++|...|+..    +.+..+|..+...|...|+.++|++.|++..+
T Consensus       508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k-~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        508 GKEIHAHVLRTGIGFDGFLPNALLDLYVR-CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             hHHHHHHHHHhCCCccceechHHHHHHHH-cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                            1222334455444 78888888888775    45677888888888888888888888887765


Q ss_pred             --cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhh
Q psy12713        343 --LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYT  420 (551)
Q Consensus       343 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (551)
                        ..|+.......+..+..   .                     +..+.++..+..-..                     
T Consensus       583 ~g~~Pd~~T~~~ll~a~~~---~---------------------g~v~ea~~~f~~M~~---------------------  617 (857)
T PLN03077        583 SGVNPDEVTFISLLCACSR---S---------------------GMVTQGLEYFHSMEE---------------------  617 (857)
T ss_pred             cCCCCCcccHHHHHHHHhh---c---------------------ChHHHHHHHHHHHHH---------------------
Confidence              35665443333221100   0                     011111111111000                     


Q ss_pred             HHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHH
Q psy12713        421 QKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE  500 (551)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  500 (551)
                                .....           +...........+...|++++|.+.+++. ...|+ +.+|..+-..+...|+.+
T Consensus       618 ----------~~gi~-----------P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e  674 (857)
T PLN03077        618 ----------KYSIT-----------PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVE  674 (857)
T ss_pred             ----------HhCCC-----------CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH
Confidence                      00000           11111112222366679999999999886 35564 667777777888899999


Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        501 EALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       501 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      .|....+++++++|++...+..++.+|...|++.++..
T Consensus       675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            99999999999999999999999999999888776553

>PLN02789 farnesyltranstransferase

Probab=99.82  E-value=1.5e-17  Score=150.31  Aligned_cols=205  Identities=15%  Similarity=0.150  Sum_probs=126.0

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH--HH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY--EE  189 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~  189 (551)
                      ++.++|+..+.+++.++|++    ..+|..++.++..+|.++++++..+++++..+|++..+|..++.++...|..  ++
T Consensus        51 e~serAL~lt~~aI~lnP~~----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGN----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            34455556666666666655    3344445555555552246666666666666666666666666666555542  45


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---cCH----H
Q psy12713        190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDF----D  262 (551)
Q Consensus       190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~  262 (551)
                      ++.+++++++.+|++..+|..++.++...      |+++++++.+.++++.+|.+..+|+..+.++...   |.+    +
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence            56666666666666666666666555555      6666666666666666666666666666665544   222    3


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        263 GAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      +++.+..+++..+|++..+|..++.++...   .++..+|+..+.+++...|.++.++..++.++..
T Consensus       201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            566666677777777777777777663320   2344567777777777777777777777777765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.82  E-value=7.6e-17  Score=165.91  Aligned_cols=360  Identities=12%  Similarity=0.033  Sum_probs=268.0

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC-------
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD-------  131 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------  131 (551)
                      +++..+-.....+.+.|++++|..+|+++.+  |    +...|..+...|.+.|++++|+..|+++....+..       
T Consensus       156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~  229 (697)
T PLN03081        156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV  229 (697)
T ss_pred             cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence            3556666677788888888888888887754  3    45577788888888888888888888876532110       


Q ss_pred             -------------------------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        132 -------------------------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       132 -------------------------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                                               ......++..+...|.+.| ++++|...|+..   .+.+..+|..+...|.+.|+
T Consensus       230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~  305 (697)
T PLN03081        230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY  305 (697)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC
Confidence                                     0001235566889999999 999999999876   34578899999999999999


Q ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHH
Q psy12713        187 YEEALRNLDKTIALN-PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       187 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  264 (551)
                      +++|+..|++..+.. ..+...+..+...+...      |++++|.+.+..+++.. +.+..++..+...|.+.|++++|
T Consensus       306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~------g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A  379 (697)
T PLN03081        306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL------ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA  379 (697)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence            999999999987643 22455666666555555      99999999999999876 56678899999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        265 EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      ...|++..+   .+...|..+...|.+ .|+.++|++.|+++.+.  .| +..++..+...+...|..++|.++|+...+
T Consensus       380 ~~vf~~m~~---~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        380 RNVFDRMPR---KNLISWNALIAGYGN-HGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             HHHHHhCCC---CCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            999998764   356678888888777 99999999999998865  34 477888899999999999999999999875


Q ss_pred             c---ccCHHH---HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCc
Q psy12713        343 L---ARDEAE---LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDK  416 (551)
Q Consensus       343 ~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (551)
                      .   .|+...   +...+...                           +..+.+.+.+.+                    
T Consensus       455 ~~g~~p~~~~y~~li~~l~r~---------------------------G~~~eA~~~~~~--------------------  487 (697)
T PLN03081        455 NHRIKPRAMHYACMIELLGRE---------------------------GLLDEAYAMIRR--------------------  487 (697)
T ss_pred             hcCCCCCccchHhHHHHHHhc---------------------------CCHHHHHHHHHH--------------------
Confidence            3   344221   11111111                           111122222111                    


Q ss_pred             chhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh
Q psy12713        417 ADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  496 (551)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  496 (551)
                                        .+..+        ....+......+...|+++.|...+++.++..|++...|..++.+|...
T Consensus       488 ------------------~~~~p--------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        488 ------------------APFKP--------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             ------------------CCCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence                              00001        1111122223356679999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHhhc
Q psy12713        497 GQYEEALRNLDKTIAL  512 (551)
Q Consensus       497 g~~~~A~~~~~~al~~  512 (551)
                      |++++|.+.++...+.
T Consensus       542 G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        542 GRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            9999999999987754

>KOG1156|consensus

Probab=99.81  E-value=4.8e-16  Score=144.16  Aligned_cols=397  Identities=15%  Similarity=0.122  Sum_probs=274.3

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .-.+++..+.-.+..++|...++..+.+++..|++++..+.    .|..+..+| +.++|......++..++.+...|..
T Consensus         6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm----kGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv   80 (700)
T KOG1156|consen    6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAM----KGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHV   80 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh----ccchhhccc-chHHHHHHHHHHhccCcccchhHHH
Confidence            45567777888889999999999999999999999765444    999999999 9999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +|.++....+|++|+++|+.|+.+.|++...+..++....++      ++++.....-.+.++..|..-..|...+..+.
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~  154 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQH  154 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888888      99999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcC---CCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713        257 DQEDFDGAEEYFNRSIRVD---PENA-----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG  328 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  328 (551)
                      ..|++..|...++...+..   |+..     ........+... .|.+++|.+.+..--...-+........|.++.++|
T Consensus       155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~  233 (700)
T KOG1156|consen  155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLG  233 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHh
Confidence            9999999999988877654   3322     233334444344 788899988887654444444556678899999999


Q ss_pred             CHHHHHHHHHHhcccccCHHHHHHHHhHHHH-HHHHHHHH-HHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccC
Q psy12713        329 RLEEAVKCFNKALPLARDEAELSHIYSLRDA-AIAQMKVC-ERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD  406 (551)
Q Consensus       329 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  406 (551)
                      ++++|...|...+..+|++......+..+.- ........ ..+.......++....                       
T Consensus       234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-----------------------  290 (700)
T KOG1156|consen  234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-----------------------  290 (700)
T ss_pred             hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-----------------------
Confidence            9999999999999999998876554433311 11111111 0011100000000000                       


Q ss_pred             CCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhcc--------
Q psy12713        407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKV--------  478 (551)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------  478 (551)
                      .......++...+...+..++...--...|...   ....+.+..-..       ..=.++=+..|...+.-        
T Consensus       291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k-------~~~le~Lvt~y~~~L~~~~~f~~~D  360 (700)
T KOG1156|consen  291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEK-------VAFLEKLVTSYQHSLSGTGMFNFLD  360 (700)
T ss_pred             hhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhH-------hHHHHHHHHHHHhhcccccCCCccc
Confidence            000000111122222222222111000001000   000000000000       00011111111111111        


Q ss_pred             -----CCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        479 -----DPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       479 -----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                           .|. -.+.++.++.-+...|+++.|..+...|+..-|+-.+.+...|.++...|+..+|..
T Consensus       361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~  426 (700)
T KOG1156|consen  361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAA  426 (700)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHH
Confidence                 121 345678899999999999999999999999999999999999999999887665543

>PLN02789 farnesyltranstransferase

Probab=99.80  E-value=8e-17  Score=145.57  Aligned_cols=213  Identities=11%  Similarity=0.055  Sum_probs=186.4

Q ss_pred             HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713         71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      +...+.+++|+..+.++++.+|.   +..+|..++.++..+| ++++++..+++++..+|++.    .+|..++.++...
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l  119 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKL  119 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHc
Confidence            45577999999999999999999   9999999999999998 68999999999999999984    4667789888888


Q ss_pred             cCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-CChhH
Q psy12713        150 ASDF--TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP-GDRER  226 (551)
Q Consensus       150 ~~~~--~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  226 (551)
                      | +.  ++++.+++++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|..++.+....... .....
T Consensus       120 ~-~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        120 G-PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             C-chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence            8 74  78899999999999999999999999999999999999999999999999999999999776543000 01112


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ  291 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  291 (551)
                      .++++.+..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++-.++.++..
T Consensus       199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            3578899999999999999999999999988    4566789999999999999999999999998654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.80  E-value=7.7e-16  Score=130.90  Aligned_cols=239  Identities=14%  Similarity=0.189  Sum_probs=208.2

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHH
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQ  176 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~  176 (551)
                      +..|.-+.-.++.++|+..|..+++.+|..    ..+.+.+|..+...| ..+.|+..-+..+. .|+.     ..+...
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t----~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~-spdlT~~qr~lAl~q  112 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPET----FEAHLTLGNLFRSRG-EVDRAIRIHQTLLE-SPDLTFEQRLLALQQ  112 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchh----hHHHHHHHHHHHhcc-hHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Confidence            556777888899999999999999988877    556677999999999 99999998876654 4554     357889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc-----HHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV-----VEACTLF  251 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l  251 (551)
                      +|.-|+..|-++.|...|........--..+...+..+|-..      .+|++|++.-++..+..+..     +..+..+
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCEL  186 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCEL  186 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence            999999999999999999999876665666777777555555      99999999999999988776     4578889


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHhCCH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRGRL  330 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  330 (551)
                      +..+....+.+.|+..+.++++.+|.+..+-..+|.+.+. .|+++.|++.++.+++.+|.. +++...+..+|...|+.
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999999999999999999999888 999999999999999999987 77888999999999999


Q ss_pred             HHHHHHHHHhcccccCHHHHHHH
Q psy12713        331 EEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       331 ~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      ++....+.++.+..++.......
T Consensus       266 ~~~~~fL~~~~~~~~g~~~~l~l  288 (389)
T COG2956         266 AEGLNFLRRAMETNTGADAELML  288 (389)
T ss_pred             HHHHHHHHHHHHccCCccHHHHH
Confidence            99999999999988776544333

>KOG1127|consensus

Probab=99.80  E-value=3.5e-17  Score=158.24  Aligned_cols=439  Identities=14%  Similarity=0.059  Sum_probs=281.9

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH----------------------H
Q psy12713         80 AIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV----------------------N  137 (551)
Q Consensus        80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------~  137 (551)
                      |..+|+.++..++.   +   ....|.+......|..|...+........+++...-                      .
T Consensus       387 as~~Ydn~lSaD~s---n---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~  460 (1238)
T KOG1127|consen  387 ASICYDNALSADAS---N---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECEN  460 (1238)
T ss_pred             HHHHHHHhhcCChh---h---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHH
Confidence            34444444444443   2   444555666666777777777666655422221100                      0


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      .++..+..+ .+. +...|...|-++++++|..+.++..+|.+|...-+...|..+|+++.++++.+..++...+..+..
T Consensus       461 ~~~w~a~~~-~rK-~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae  538 (1238)
T KOG1127|consen  461 SEFWVALGC-MRK-NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE  538 (1238)
T ss_pred             HHHHHHHHH-hhh-hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence            111112222 234 688899999999999999999999999999999999999999999999999999999888855554


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      .      .+++.|.......-+..|..  ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|.. .|+
T Consensus       539 ~------~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGr  611 (1238)
T KOG1127|consen  539 E------STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGR  611 (1238)
T ss_pred             c------ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCc
Confidence            4      99999999977766666654  35667799999999999999999999999999999999999999888 999


Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK  375 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (551)
                      +..|++.|.++..++|.+..+.+..+.+....|++.+|+..+...+............++.+-.-.+.....  -+....
T Consensus       612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~--~gf~~k  689 (1238)
T KOG1127|consen  612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI--TGFQKK  689 (1238)
T ss_pred             eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHhhh
Confidence            999999999999999999999999999999999999999999998876554433322222221111111111  111111


Q ss_pred             CCcchhhhhHHHHHHHHHH-hhchhhhccccCCCCCccccCcc----hhhHHHHh-hhccCCc---c---ccCCCcchhh
Q psy12713        376 VSPRSQNITKNEKLAIKQL-RENNDIIIRPADKGGKTVVMDKA----DYTQKMTS-ILNSNDY---E---IIPGDPTKTI  443 (551)
Q Consensus       376 ~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~---~---~~~~~~~~~~  443 (551)
                      .....+.........+... ..+...+.-..+...-.....+.    .+...... .......   +   .........+
T Consensus       690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl  769 (1238)
T KOG1127|consen  690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL  769 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence            1112222222222222221 11110000000000000000000    00000000 0000000   0   0000001111


Q ss_pred             hhhhhhccchhhhchhhh--------hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713        444 EESEKYGNLENESGQKHA--------ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  515 (551)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  515 (551)
                      ........+++.+..++.        ..+-..|+.++.++++++.++...|..||.+ -..|++.-|..+|-+.+..+|.
T Consensus       770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~  848 (1238)
T KOG1127|consen  770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT  848 (1238)
T ss_pred             HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence            111122223333322221        2334579999999999999999999999999 6669999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhhhh
Q psy12713        516 FHVARAQRHFVWTSTLAELMA  536 (551)
Q Consensus       516 ~~~a~~~l~~~~~~~~~~~~a  536 (551)
                      +..+|.++|.++.+..+..-|
T Consensus       849 ~~~~W~NlgvL~l~n~d~E~A  869 (1238)
T KOG1127|consen  849 CHCQWLNLGVLVLENQDFEHA  869 (1238)
T ss_pred             chhheeccceeEEecccHHHh
Confidence            999999999998876665544

>PLN03077 Protein ECB2; Provisional

Probab=99.78  E-value=5.5e-16  Score=163.56  Aligned_cols=357  Identities=11%  Similarity=0.029  Sum_probs=231.1

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIK  135 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~  135 (551)
                      .+++..+......+.+.|++++|..+|+++..  |    +...|..+...|.+.|++++|+..|+++...  .|+..   
T Consensus       320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~---  390 (857)
T PLN03077        320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI---  390 (857)
T ss_pred             ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce---
Confidence            34667777888888999999999999988653  2    4557888888999999999999999987664  34432   


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  214 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  214 (551)
                        .+..+-..+...| +++.|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+   .+...|..+...
T Consensus       391 --t~~~ll~a~~~~g-~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~  464 (857)
T PLN03077        391 --TIASVLSACACLG-DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAG  464 (857)
T ss_pred             --eHHHHHHHHhccc-hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHH
Confidence              2222444556666 67777777766665532 2345566666666666777777666665433   233344444444


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHhCCCc-----------------------------------HHHHHHHHHHHHhcc
Q psy12713        215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNV-----------------------------------VEACTLFAQVLVDQE  259 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~la~~~~~~~  259 (551)
                      +...      |+.++|+..|+++....+.+                                   ......+...|.+.|
T Consensus       465 ~~~~------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G  538 (857)
T PLN03077        465 LRLN------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG  538 (857)
T ss_pred             HHHC------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence            4333      66666666666665432222                                   122334557788888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                      +.++|...|+..    +.+...|..+...|.. .|+.++|++.|+++.+.  .|+ ..++..+-..+.+.|+.++|..+|
T Consensus       539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f  612 (857)
T PLN03077        539 RMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYF  612 (857)
T ss_pred             CHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHH
Confidence            888888888775    4567778888888666 89999999999988764  344 556777777888889999999999


Q ss_pred             HHhccc---ccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCcccc
Q psy12713        338 NKALPL---ARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVM  414 (551)
Q Consensus       338 ~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  414 (551)
                      +...+.   .|+...   .-.........                     +..+++.+.+.+                  
T Consensus       613 ~~M~~~~gi~P~~~~---y~~lv~~l~r~---------------------G~~~eA~~~~~~------------------  650 (857)
T PLN03077        613 HSMEEKYSITPNLKH---YACVVDLLGRA---------------------GKLTEAYNFINK------------------  650 (857)
T ss_pred             HHHHHHhCCCCchHH---HHHHHHHHHhC---------------------CCHHHHHHHHHH------------------
Confidence            887743   343211   11111000000                     011111111111                  


Q ss_pred             CcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHH
Q psy12713        415 DKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC  494 (551)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  494 (551)
                                          .+..+        ....+....+.+...|+.+.|....+++++++|+++..|..++.+|.
T Consensus       651 --------------------m~~~p--------d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        651 --------------------MPITP--------DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             --------------------CCCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence                                00001        11111112222445688999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHhh
Q psy12713        495 LFGQYEEALRNLDKTIA  511 (551)
Q Consensus       495 ~~g~~~~A~~~~~~al~  511 (551)
                      ..|+|++|.+..+...+
T Consensus       703 ~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        703 DAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HCCChHHHHHHHHHHHH
Confidence            99999999999987754

>KOG1840|consensus

Probab=99.77  E-value=3.6e-16  Score=147.41  Aligned_cols=239  Identities=16%  Similarity=0.165  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDT----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV------  166 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------  166 (551)
                      ...+...+|..|..+|++++|+..++.++..-    .............+|..|..++ ++.+|+..|++++.+      
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcC
Confidence            77778889999999999999999999999861    1111122334445999999999 999999999999976      


Q ss_pred             --CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCHH---HHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713        167 --DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-----NFHV---ARAQRHFVVHKMIVPGDRERVEQSLKEFRN  236 (551)
Q Consensus       167 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  236 (551)
                        +|.-+.++.++|.+|...|++++|..++++++++..     ..+.   .+..++      .++...+++++|..++++
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~------~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA------AILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH------HHHHHhcchhHHHHHHHH
Confidence              344467899999999999999999999999998732     2222   333444      344445999999999999


Q ss_pred             HHHhCC--------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        237 FVDTHS--------NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       237 ~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      ++++.-        ..+..+.++|.+|..+|++++|.+.+++++.+.        +.....+..+|..+.+ .+++.+|.
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~-~k~~~~a~  429 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE-LKKYEEAE  429 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH-hcccchHH
Confidence            987642        335688999999999999999999999999873        2335578889999877 99999999


Q ss_pred             HHHHHHHhc-------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        301 KLIEKAISI-------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       301 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      ..|.+++.+       .|+....+.+|+-+|..+|++++|+++.++++..
T Consensus       430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            999988765       3445678999999999999999999999998753

>KOG2376|consensus

Probab=99.76  E-value=3.2e-14  Score=130.84  Aligned_cols=414  Identities=12%  Similarity=0.104  Sum_probs=239.8

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      +....++..-..+...|+|++|.....+++...|+   ...+....-.+..+.++|++|+...+.-......+     ..
T Consensus        10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-----~~   81 (652)
T KOG2376|consen   10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-----SF   81 (652)
T ss_pred             ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-----hh
Confidence            35578888889999999999999999999999998   89999999999999999999996655433222221     11


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      .+..+.|.++++ ..++|+..++   ..++.+.......|++++++|+|++|...|+...+.+.++.+........-.  
T Consensus        82 ~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--  155 (652)
T KOG2376|consen   82 FFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--  155 (652)
T ss_pred             hHHHHHHHHHcc-cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--
Confidence            256999999999 9999999998   4566667788999999999999999999999998876665544332221100  


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------CCC-----CHHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----------DPE-----NASLY  282 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~-----~~~~~  282 (551)
                            +-.-.+ . ..+.....|. +.+.+++.+.++...|+|.+|++.+++++++          +.+     -..+.
T Consensus       156 ------~a~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir  227 (652)
T KOG2376|consen  156 ------AAALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR  227 (652)
T ss_pred             ------HHhhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence                  000000 0 2222223333 3456666666666666666666666666322          111     12344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------------------------------------------------
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------------------------------------------------  313 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------------------------------  313 (551)
                      ..++.++.. +|+.++|...|...++.+|.+                                                 
T Consensus       228 vQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk  306 (652)
T KOG2376|consen  228 VQLAYVLQL-QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK  306 (652)
T ss_pred             HHHHHHHHH-hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            555666333 666666666666666554322                                                 


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH-HHHHHHHHhccccCCCcchhhhhHHHHHHHH
Q psy12713        314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI-AQMKVCERYNIKKKVSPRSQNITKNEKLAIK  392 (551)
Q Consensus       314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  392 (551)
                      ...+.+.+.+.+..+..+.+.+...+.-...|................ ........+.......+.-.....-...-  
T Consensus       307 ~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ--  384 (652)
T KOG2376|consen  307 QAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ--  384 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH--
Confidence            123446677777777777777766665555554332111111000000 00011111110000000000000000000  


Q ss_pred             HHhhchhhhccccCCCCCccccCcchhhHHHHhhh--------ccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC
Q psy12713        393 QLRENNDIIIRPADKGGKTVVMDKADYTQKMTSIL--------NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD  464 (551)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (551)
                                         +.+..+++..++..+.        ....+...|+....             ....++..++
T Consensus       385 -------------------l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a-------------iv~l~~~~~~  432 (652)
T KOG2376|consen  385 -------------------LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA-------------IVALYYKIKD  432 (652)
T ss_pred             -------------------HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH-------------HHHHHHhccC
Confidence                               0111112222222211        00011111111111             0111222233


Q ss_pred             -------hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        465 -------FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       465 -------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                             +++|+.++.....-.+..-..+...+..-.+.|+-++|...+++.++.+|++.++...+..+|..
T Consensus       433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~  504 (652)
T KOG2376|consen  433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR  504 (652)
T ss_pred             CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence                   45555555554444444556677778888888999999999999999999999999999888876

>KOG1840|consensus

Probab=99.75  E-value=5.8e-16  Score=146.04  Aligned_cols=238  Identities=18%  Similarity=0.198  Sum_probs=197.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc--------CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc----
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES--------TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED----  127 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----  127 (551)
                      -..+....|..+..+|+|+.|+..|+.+++.        .|.   -......+|.+|..++++.+|+..|++++.+    
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~---va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV---VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3455666899999999999999999999998        453   5555556999999999999999999999986    


Q ss_pred             -CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        128 -TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       128 -~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                       .++++.+ +..+.++|..|...| ++++|..++++++.+.        |.-...+..++.++..++++++|..++++++
T Consensus       275 ~G~~h~~v-a~~l~nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  275 FGEDHPAV-AATLNNLAVLYYKQG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             cCCCCHHH-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence             3455544 778999999999999 9999999999998863        2235677889999999999999999999998


Q ss_pred             hcC-----C---CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhccCHH
Q psy12713        199 ALN-----P---NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFD  262 (551)
Q Consensus       199 ~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~  262 (551)
                      ++.     +   .-.....++|.+++..      |++++|.+.+++++.+.        +.....+..+|..+.+.+++.
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKM------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            762     2   2345677888888887      99999999999999865        223457889999999999999


Q ss_pred             HHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        263 GAEEYFNRSIRV-------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       263 ~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                      +|...|.+++.+       .|+....+.+++.+|-. +|+++.|+++.+.++..
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~-~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA-QGNYEAAEELEEKVLNA  479 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cccHHHHHHHHHHHHHH
Confidence            999999988765       34556688899999555 99999999999998843

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.75  E-value=5.4e-15  Score=140.47  Aligned_cols=209  Identities=15%  Similarity=0.149  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.++..+|.++...|+.+++...+.++....|.+... .......+.++...| ++++|...+++++..+|++..++..
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            67777777777777777777777777766666654332 233444666677777 7777777777777777766655543


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                       +..+...|++..+.....+++                                    ......+|........+|.++.
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVL------------------------------------PLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHH------------------------------------hccCcCCCCcHHHHHHHHHHHH
Confidence             444444333332222222222                                    2222233444445555555666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH----HHHHHHHHHHHHhCCHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM----FAYETLGTIEVQRGRLEE  332 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~  332 (551)
                      ..|++++|+..++++++..|+++.++..+|.+++. .|++++|+.++++++...|.++    ..+..+|.++...|++++
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            66666666666666666666665555556665554 5666666666666655544321    234455666666666666


Q ss_pred             HHHHHHHhccccc
Q psy12713        333 AVKCFNKALPLAR  345 (551)
Q Consensus       333 A~~~~~~a~~~~~  345 (551)
                      |+..|++++...|
T Consensus       205 A~~~~~~~~~~~~  217 (355)
T cd05804         205 ALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHhcccc
Confidence            6666666554433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1915|consensus

Probab=99.75  E-value=1.5e-13  Score=123.02  Aligned_cols=417  Identities=9%  Similarity=0.048  Sum_probs=287.2

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +...|+.-|.--..++++..|.++|+++|..+..   +...|...+.+-++......|...+++++.+-|.-..    .|
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq----lW  144 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ----LW  144 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH----HH
Confidence            5677888888888999999999999999999987   8999999999999999999999999999999887543    44


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      +....+--.+| +...|.+.|++.+...|+ ..+|......-.+.++.+.|...|++.+-..|+ ...|+..+..-.+  
T Consensus       145 yKY~ymEE~Lg-Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k--  219 (677)
T KOG1915|consen  145 YKYIYMEEMLG-NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEK--  219 (677)
T ss_pred             HHHHHHHHHhc-ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHh--
Confidence            55777777889 999999999999999985 678888888889999999999999999988875 5566666644444  


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCC
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ-ARGN  295 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~  295 (551)
                          .|+..-|...|.+++....++.   ..+...|..-..++.++.|..+|+-++..-|.+..-....+.+.+. +-|+
T Consensus       220 ----~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd  295 (677)
T KOG1915|consen  220 ----HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD  295 (677)
T ss_pred             ----cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence                4999999999999998776653   3556677777888999999999999999988873332223333232 2344


Q ss_pred             H---HHHHH-----HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH--HHHHhHHHHHHHHHH
Q psy12713        296 V---DEAIK-----LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL--SHIYSLRDAAIAQMK  365 (551)
Q Consensus       296 ~---~~A~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~  365 (551)
                      -   ++++.     -|++.+..+|.+-.+|+..-.+-...|+.+.-.+.|++|+...|...+-  |.-|...   .....
T Consensus       296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL---WinYa  372 (677)
T KOG1915|consen  296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL---WINYA  372 (677)
T ss_pred             hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH---HHHHH
Confidence            3   33332     4677888899999999999999999999999999999999887764331  1111111   00000


Q ss_pred             HHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhh
Q psy12713        366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEE  445 (551)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (551)
                      +...+..     ........-+...++.++...             ..+ ...|...+...++..++..+......++..
T Consensus       373 lyeEle~-----ed~ertr~vyq~~l~lIPHkk-------------FtF-aKiWlmyA~feIRq~~l~~ARkiLG~AIG~  433 (677)
T KOG1915|consen  373 LYEELEA-----EDVERTRQVYQACLDLIPHKK-------------FTF-AKIWLMYAQFEIRQLNLTGARKILGNAIGK  433 (677)
T ss_pred             HHHHHHh-----hhHHHHHHHHHHHHhhcCccc-------------chH-HHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence            0000000     000001111111111111100             000 000111111122222222222222233333


Q ss_pred             hhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy12713        446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP  514 (551)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  514 (551)
                      +|..-.+-.....-.++++++....+|++-++-.|.+..+|...|..-..+|+.+.|...|+-|++...
T Consensus       434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            333222222222244568899999999999999999999999999999999999999999998887653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.73  E-value=4.5e-13  Score=128.44  Aligned_cols=271  Identities=17%  Similarity=0.103  Sum_probs=200.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ..+.++-++.++...|++++|+.++.+.-..-.+   ....+-.+|.++.++|++++|...|...++.+|++..+..   
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~---   76 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR---   76 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH---
Confidence            4567888999999999999999999998888888   8899999999999999999999999999999999955433   


Q ss_pred             HHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCC--------------------------------hhHHHHHHHHHH
Q psy12713        140 IKRAVVHLH-----AASDFTKAFADLDEAEKVDPNV--------------------------------ADSYYQRGQIYC  182 (551)
Q Consensus       140 ~~la~~~~~-----~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~la~~~~  182 (551)
                       .+..+...     .. +.+.-...|++.....|..                                |..+..+-.+|.
T Consensus        77 -~L~~~~g~~~~~~~~-~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~  154 (517)
T PF12569_consen   77 -GLEEALGLQLQLSDE-DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK  154 (517)
T ss_pred             -HHHHHHhhhcccccc-cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence             34444421     22 4566677777776666643                                112222323333


Q ss_pred             HhCCHHHHHHHHHHHH---hcC------------CCCH--HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713        183 LFGQYEEALRNLDKTI---ALN------------PNFH--VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV  245 (551)
Q Consensus       183 ~~~~~~~A~~~~~~~l---~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  245 (551)
                      ...+..-....+....   +..            |...  .+++.++..+..      .|++++|+.++++++...|..+
T Consensus       155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~------~g~~~~Al~~Id~aI~htPt~~  228 (517)
T PF12569_consen  155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY------LGDYEKALEYIDKAIEHTPTLV  228 (517)
T ss_pred             ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhcCCCcH
Confidence            2222222222222221   111            1111  233445544444      4999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc--CC-------HHH
Q psy12713        246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--SC-------MFA  316 (551)
Q Consensus       246 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--~~-------~~~  316 (551)
                      +.+...|.++-..|++.+|...++.+-.+++.+-.+....+..+++ .|+.++|...+......+.  ..       ...
T Consensus       229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf  307 (517)
T PF12569_consen  229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF  307 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence            9999999999999999999999999999999988777777777677 9999999999988765542  11       233


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      ....|.+|.+.|++..|++.|..+.+...
T Consensus       308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  308 ETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45679999999999999999998877643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.73  E-value=1.5e-13  Score=120.87  Aligned_cols=277  Identities=18%  Similarity=0.160  Sum_probs=217.9

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      +......|..-+..|+|.+|.....+.-+..+.   ...++..-+.+..++|+++.|-.++.++-+..+++.   .....
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~l  157 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVEL  157 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHH
Confidence            455667888889999999999999998888876   777888888899999999999999999999855542   34567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM--  218 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--  218 (551)
                      ..+.+....| +++.|.....++....|.++.+......+|...|++........+.-+..--+..-...+-..-+..  
T Consensus       158 trarlll~~~-d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL  236 (400)
T COG3071         158 TRARLLLNRR-DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL  236 (400)
T ss_pred             HHHHHHHhCC-CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence            7999999999 9999999999999999999999999999999999999999999888776543333222222111110  


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      .-....+..+.-..+++..-..-..++.....++.-+.+.|+.++|.+..+.+++..-+.. ....++.  +. -+++..
T Consensus       237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~-~~d~~~  312 (400)
T COG3071         237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LR-PGDPEP  312 (400)
T ss_pred             HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cC-CCCchH
Confidence            1111122222333344444444455678888999999999999999999999998765543 3333333  45 789999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      =++..++.+...|+++..+..+|.++.+.+.|.+|..+|+.+++..|+..
T Consensus       313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence            99999999999999999999999999999999999999999998877644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.71  E-value=3.7e-15  Score=132.24  Aligned_cols=115  Identities=20%  Similarity=0.169  Sum_probs=91.0

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      +..+..++..|..++..|++++|+..|++++...|.++....+++.+|.++...|++++|+..++++++..|+++.. ..
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-DY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-HH
Confidence            44788899999999999999999999999999988744455788999999999999999999999999999887664 34


Q ss_pred             HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713        138 AHIKRAVVHLHA--------ASDFTKAFADLDEAEKVDPNVADSY  174 (551)
Q Consensus       138 ~~~~la~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~  174 (551)
                      +++.+|.++...        | ++++|+..+++++..+|++...+
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHH
Confidence            667788887765        5 66666666666666666664443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.70  E-value=7.3e-15  Score=130.34  Aligned_cols=198  Identities=19%  Similarity=0.113  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh---
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD---  172 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---  172 (551)
                      ..+..++.+|..++..|++++|+..+++++...|+++.. ..+++.+|.++...| ++++|+..++++++.+|+++.   
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA-EQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHH
Confidence            466777777888778888888888888877777766432 345666777777777 788888888888777777665   


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                      +++.+|.++....                          +      ..+...|++++|+..+++++..+|++..++..+.
T Consensus       109 a~~~~g~~~~~~~--------------------------~------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       109 AYYLRGLSNYNQI--------------------------D------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHHhc--------------------------c------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            5677777776540                          0      2222335555555555555555555543332221


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCC
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGR  329 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~  329 (551)
                      .+....+    ..             ......+|..++. .|++.+|+..+++++...|+.   +.++..+|.++...|+
T Consensus       157 ~~~~~~~----~~-------------~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       157 RMDYLRN----RL-------------AGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHH----HH-------------HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            1111000    00             1112345555555 666666666666666665543   4566666666666666


Q ss_pred             HHHHHHHHHHhccccc
Q psy12713        330 LEEAVKCFNKALPLAR  345 (551)
Q Consensus       330 ~~~A~~~~~~a~~~~~  345 (551)
                      +++|..+++......|
T Consensus       219 ~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       219 KDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            6666666665554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.70  E-value=7.5e-14  Score=132.64  Aligned_cols=274  Identities=16%  Similarity=0.072  Sum_probs=201.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      +.+..+..+|..+...|+.+.|...+.++.+..|.+....+.....|.++...|++++|...+++++...|++..    +
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a   79 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL----A   79 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----H
Confidence            467889999999999999999999999988888764345677888999999999999999999999999998853    2


Q ss_pred             HHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        139 HIKRAVVHLHAA---SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       139 ~~~la~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      +.. +..+...|   +....+...+......+|........+|.++...|++++|+..++++++..|++...+..++.++
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~  158 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL  158 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            222 33444444   04445555554444556777778888999999999999999999999999999999999999888


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLM  289 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~  289 (551)
                      +..      |++++|+..+++++...|..+    ..+..+|.++...|++++|+..+++++...|..  .......+...
T Consensus       159 ~~~------g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l  232 (355)
T cd05804         159 EMQ------GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL  232 (355)
T ss_pred             HHc------CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence            887      999999999999999877443    356689999999999999999999998766622  21111111111


Q ss_pred             --HHhcCCHHHHHHH--H-HHHHhcCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        290 --LQARGNVDEAIKL--I-EKAISIDKS--CMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       290 --~~~~~~~~~A~~~--~-~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                        +...|....+..+  + .......|.  ........+.++...|+.++|...++.....
T Consensus       233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence              1213433333322  1 111111121  2233346888888999999999999877553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785|consensus

Probab=99.68  E-value=1.4e-12  Score=112.75  Aligned_cols=257  Identities=12%  Similarity=0.106  Sum_probs=173.5

Q ss_pred             HHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713         69 KRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH  148 (551)
Q Consensus        69 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  148 (551)
                      ..++...||..|+.+++-.+..+.+  .....-..+|.|++.+|+|++|...|+-+.+.+.-+.+    .+.+++.+++-
T Consensus        30 edfls~rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e----l~vnLAcc~Fy  103 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE----LGVNLACCKFY  103 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc----cchhHHHHHHH
Confidence            3456778999999999887766554  23355666899999999999999999988875544434    34559999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH
Q psy12713        149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE  228 (551)
Q Consensus       149 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (551)
                      +| .|.+|.....+    .|+++-....+-.+..+.|+-++-.. |...++   +..+-...++.+.+..      -.++
T Consensus       104 Lg-~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR------~HYQ  168 (557)
T KOG3785|consen  104 LG-QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMR------MHYQ  168 (557)
T ss_pred             HH-HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHH------HHHH
Confidence            99 99999876655    46666555555555566666544333 333332   2224445566666665      7788


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCHHHH--------
Q psy12713        229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA-RGNVDEA--------  299 (551)
Q Consensus       229 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~A--------  299 (551)
                      +|++.|.+.+..+|+....-..++.+|.++.-++-+.+.+.--++..|+++.+....+...++. .|+..++        
T Consensus       169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN  248 (557)
T KOG3785|consen  169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN  248 (557)
T ss_pred             HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence            8888888888888877777777888888888888888888888888888877766666554431 1222111        


Q ss_pred             --------HHHHH----------HHHhcCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        300 --------IKLIE----------KAISIDKS----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       300 --------~~~~~----------~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                              ...++          -+++.-|.    -|++..++...|.++|+..+|....+..   +|..+.
T Consensus       249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~  317 (557)
T KOG3785|consen  249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPY  317 (557)
T ss_pred             ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChH
Confidence                    11111          11122222    2678899999999999999999888754   555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.66  E-value=2.7e-14  Score=120.75  Aligned_cols=128  Identities=19%  Similarity=0.323  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--HHHHHH
Q psy12713        224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN--VDEAIK  301 (551)
Q Consensus       224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~  301 (551)
                      .++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.+++...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            488899999999999999999999999999999999999999999999999999999999999975443777  599999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                      .++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+.+-.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999999999999988766543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.65  E-value=5.9e-14  Score=140.36  Aligned_cols=262  Identities=12%  Similarity=0.055  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ..++..++..+...+ ++++|+..++.+++.+|+...+++.+|.++.+.+++.++...  .++...+.+           
T Consensus        31 ~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~-----------   96 (906)
T PRK14720         31 FKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN-----------   96 (906)
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-----------
Confidence            557777999999999 999999999999999999999999999999999998887766  555554433           


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                               .++ .++.++...+...+.+..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..+.. . +
T Consensus        97 ---------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-d  164 (906)
T PRK14720         97 ---------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-D  164 (906)
T ss_pred             ---------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-h
Confidence                     344 566666666777888888999999999999999999999999999999999999999999666 6 9


Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK  375 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (551)
                      .++|+.++.+++..              +...+++.++.+++++.+..+|++.+....+-..        +..       
T Consensus       165 L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~k--------i~~-------  215 (906)
T PRK14720        165 KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERK--------VLG-------  215 (906)
T ss_pred             HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHH--------HHh-------
Confidence            99999999999876              6677899999999999999999987643222100        000       


Q ss_pred             CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhh
Q psy12713        376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENE  455 (551)
Q Consensus       376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (551)
                                       ...                                           ..      .....+.-.
T Consensus       216 -----------------~~~-------------------------------------------~~------~~~~~~~~l  229 (906)
T PRK14720        216 -----------------HRE-------------------------------------------FT------RLVGLLEDL  229 (906)
T ss_pred             -----------------hhc-------------------------------------------cc------hhHHHHHHH
Confidence                             000                                           00      000011111


Q ss_pred             hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh--------------------cCHHHHHHHHHHHhhcCCc
Q psy12713        456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF--------------------GQYEEALRNLDKTIALNPN  515 (551)
Q Consensus       456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p~  515 (551)
                      ...|...++|++++..++.+++.+|.|..+...++.||...                    .++..|+..|++-+..+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G  309 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG  309 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence            22355668899999999999999999999999999999743                    2345666666666666666


Q ss_pred             hHH
Q psy12713        516 FHV  518 (551)
Q Consensus       516 ~~~  518 (551)
                      +..
T Consensus       310 ~yv  312 (906)
T PRK14720        310 NFV  312 (906)
T ss_pred             CEE
Confidence            543

>KOG1915|consensus

Probab=99.64  E-value=9.6e-11  Score=105.45  Aligned_cols=388  Identities=11%  Similarity=0.042  Sum_probs=233.1

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ..++..|+.-+..-++......|..++.+++..-|.   ....|+....+--.+|+..-|.+.|++-+...|+.     .
T Consensus       104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-----q  175 (677)
T KOG1915|consen  104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-----Q  175 (677)
T ss_pred             cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-----H
Confidence            447889999999999999999999999999999998   78888888888889999999999999999999874     4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA-RAQRHFVVH  216 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~  216 (551)
                      +|......-.+.+ ..+.|...|++.+-.+| ....|...+..-.+.|+...|...|+++++.-.++... ....+.+.+
T Consensus       176 aW~sfI~fElRyk-eieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~f  253 (677)
T KOG1915|consen  176 AWLSFIKFELRYK-EIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEF  253 (677)
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5666666777777 88888888888887776 46677777888888888888888888877665443221 111111111


Q ss_pred             HhhcCCChhHHHHHHHHHHHH--------------------------------------------HHhCCCcHHHHHHHH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNF--------------------------------------------VDTHSNVVEACTLFA  252 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~--------------------------------------------~~~~~~~~~~~~~la  252 (551)
                          -..++.++.|.-.|+-+                                            ++.+|-+.++|+.+-
T Consensus       254 ----Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl  329 (677)
T KOG1915|consen  254 ----EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL  329 (677)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence                11223444444444444                                            444555555555555


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCcCC----HHHHHH
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDPENAS-------LYVHRAMLMLQ--ARGNVDEAIKLIEKAISIDKSC----MFAYET  319 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~--~~~~~~~A~~~~~~~~~~~~~~----~~~~~~  319 (551)
                      .+-...|+.+.-.+.|++++..-|....       ++..+-.+++.  ...+.+.+.++|+.++++-|..    +..|..
T Consensus       330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm  409 (677)
T KOG1915|consen  330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM  409 (677)
T ss_pred             HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence            5555556666666666666655444321       11111111111  1455566666666666655543    445555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchh
Q psy12713        320 LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENND  399 (551)
Q Consensus       320 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  399 (551)
                      .+....++.+...|.+.+-.|+...|.+.......-                               .+..+..+.+...
T Consensus       410 yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe-------------------------------lElqL~efDRcRk  458 (677)
T KOG1915|consen  410 YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE-------------------------------LELQLREFDRCRK  458 (677)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH-------------------------------HHHHHhhHHHHHH
Confidence            555566666666666666666666665543211110                               1111111111100


Q ss_pred             hhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccC
Q psy12713        400 IIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD  479 (551)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  479 (551)
                      +                         +.+  -++-.|++...+...+.          .-..+|+.+.|...|+-|+...
T Consensus       459 L-------------------------YEk--fle~~Pe~c~~W~kyaE----------lE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  459 L-------------------------YEK--FLEFSPENCYAWSKYAE----------LETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             H-------------------------HHH--HHhcChHhhHHHHHHHH----------HHHHhhhHHHHHHHHHHHhcCc
Confidence            0                         000  01111222222211111          1223588888998998888765


Q ss_pred             CCchH--HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        480 PNVAD--SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       480 p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      .-+..  .|-..-..-...|.++.|...|++.|+..+... +|...+..-.
T Consensus       502 ~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  502 ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence            43332  233333444567889999999999988877665 6665554433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=1.2e-14  Score=116.43  Aligned_cols=97  Identities=16%  Similarity=0.101  Sum_probs=39.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                      |.++...|++++|+..|++++..+|.+..++..+|.++.. .|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence            3333444444444444444444444444444444433332 344444444444444444444444444444444444444


Q ss_pred             HHHHHHHHhcccccCHHH
Q psy12713        332 EAVKCFNKALPLARDEAE  349 (551)
Q Consensus       332 ~A~~~~~~a~~~~~~~~~  349 (551)
                      +|+..|++++...|+++.
T Consensus       110 eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359        110 LAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HHHHHHHHHHHhCCCChH
Confidence            444444444444443333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=1.6e-14  Score=115.69  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713        159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV  238 (551)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  238 (551)
                      .++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...      |++++|+..|++++
T Consensus        15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~------g~~~~A~~~y~~Al   85 (144)
T PRK15359         15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML------KEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH------hhHHHHHHHHHHHH
Confidence            344455554442   334455555555555555555555555555555555555444444      55555555555555


Q ss_pred             HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      ..+|+++.+++.+|.++...|++++|+..|++++...|+++..+..++.+
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            55555555555555555555555555555555555555555544444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.63  E-value=4.6e-12  Score=121.56  Aligned_cols=239  Identities=18%  Similarity=0.135  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      +.+++.....++...|++++|++++++....-.+.    ...+-..|.++..+| ++++|...|...+..+|++...+..
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg-~~~eA~~~y~~Li~rNPdn~~Yy~~   77 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLG-RKEEAEKIYRELIDRNPDNYDYYRG   77 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            56788889999999999999999998877766655    445566999999999 9999999999999999999999999


Q ss_pred             HHHHHHHhC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH-HHHHHHHHhCCCcHHHHHH
Q psy12713        177 RGQIYCLFG-----QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL-KEFRNFVDTHSNVVEACTL  250 (551)
Q Consensus       177 la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~  250 (551)
                      +..+.....     +.+.-...|++.....|....+.. +.      ..+..-..+.... .++...+..  ..|.+...
T Consensus        78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~------L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~  148 (517)
T PF12569_consen   78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LP------LDFLEGDEFKERLDEYLRPQLRK--GVPSLFSN  148 (517)
T ss_pred             HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH-hh------cccCCHHHHHHHHHHHHHHHHhc--CCchHHHH
Confidence            988874333     567778888888888886544322 11      1122224444433 344444433  44556666


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhc---------------CCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        251 FAQVLVDQEDFDGAEEYFNRSIRV---------------DPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       251 la~~~~~~~~~~~A~~~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      +-.+|....+..-....+......               .|..  ..+++.++..|-. .|++++|+.+++++|+..|..
T Consensus       149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g~~~~Al~~Id~aI~htPt~  227 (517)
T PF12569_consen  149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LGDYEKALEYIDKAIEHTPTL  227 (517)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCc
Confidence            666665443333333333332211               1111  2355778888655 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++.+...|.++...|++.+|.+.++.+..+++.+.-+
T Consensus       228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  228 VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            9999999999999999999999999999999887653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785|consensus

Probab=99.62  E-value=3.2e-12  Score=110.48  Aligned_cols=281  Identities=12%  Similarity=0.101  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC------------C
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT------------S  129 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------~  129 (551)
                      +..+-.|.+++..|+|++|+..|+-+...+..   ..+.+..+|.|++.+|.|.+|.....++-+.-            -
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence            34445699999999999999999998886665   78999999999999999999998877763310            0


Q ss_pred             CCchhH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        130 VDPKIK----------VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       130 ~~~~~~----------~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      ++....          ..-...++.+.+..- .|++|++.|.+++..+|.....-..++.||.++.-++-+.+.+.--++
T Consensus       135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            111000          112234677777777 899999999999999999988899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHh-hcCCCh-----------hHHHHHHHHHH----------HHHHhCCC----cHHHHHHHHH
Q psy12713        200 LNPNFHVARAQRHFVVHKM-IVPGDR-----------ERVEQSLKEFR----------NFVDTHSN----VVEACTLFAQ  253 (551)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~A~~~~~----------~~~~~~~~----~~~~~~~la~  253 (551)
                      ..|+.+.+....+...++. ..-...           ..++.+...++          .+++.-|.    -|++..+++.
T Consensus       214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i  293 (557)
T KOG3785|consen  214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII  293 (557)
T ss_pred             hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence            9999999988888777765 110000           00111111111          12222232    2578889999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhcC------cCCHHHHHHHHHHH
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA---ISID------KSCMFAYETLGTIE  324 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~---~~~~------~~~~~~~~~l~~~~  324 (551)
                      .|.++++.++|+...+   +++|..|.-+...|.+... .|+--...+.++-+   +++-      .+.......++.++
T Consensus       294 YyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aa-lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  294 YYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAA-LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             eecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHH-hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            9999999999998765   4688888888888887655 66543333333222   2221      12234455666666


Q ss_pred             HHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        325 VQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       325 ~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      +-..++++.+.++...-.-.-++...
T Consensus       370 FL~~qFddVl~YlnSi~sYF~NdD~F  395 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESYFTNDDDF  395 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            67777777777776655544444443

>KOG3060|consensus

Probab=99.62  E-value=2e-12  Score=106.73  Aligned_cols=146  Identities=18%  Similarity=0.216  Sum_probs=122.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      .++....+-....+....      |+.+-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+..
T Consensus        48 g~e~w~l~EqV~IAAld~------~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v  121 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDT------GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV  121 (289)
T ss_pred             CchHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence            344444444444444444      88999999999999889999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      ++-....+ +..+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++.+-+.|.++-....
T Consensus       122 ~~KRKlAi-lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r  193 (289)
T KOG3060|consen  122 IRKRKLAI-LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR  193 (289)
T ss_pred             HHHHHHHH-HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            87766555 4458999999999999999999999999999999999999999999999999999998764433

>KOG3060|consensus

Probab=99.62  E-value=6.1e-13  Score=109.66  Aligned_cols=180  Identities=17%  Similarity=0.217  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      .+-....+....| +.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+...-.+.-.
T Consensus        54 l~EqV~IAAld~~-~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   54 LYEQVFIAALDTG-RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence            3444566677788 899999999998888899999988999999999999999999999999999888777655533333


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---  294 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  294 (551)
                            +|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++. .|   
T Consensus       133 ------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~e  205 (289)
T KOG3060|consen  133 ------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAE  205 (289)
T ss_pred             ------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHH
Confidence                  38888899999999999999999999999999999999999999999999999998888888888776 44   


Q ss_pred             CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713        295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEV  325 (551)
Q Consensus       295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (551)
                      ++.-|.++|.++++++|.+..+++.+-.+..
T Consensus       206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  206 NLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence            5677888888888888877777766554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.61  E-value=2e-13  Score=113.82  Aligned_cols=183  Identities=19%  Similarity=0.167  Sum_probs=169.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      +...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+.......|...++.      |++..|+
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~------g~~~~A~  120 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN------GNFGEAV  120 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh------cchHHHH
Confidence            4555777777788889999999 99999999999999999999999999999988888888888887      9999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      ..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..++- .|+++.|..++..+....+
T Consensus       121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999888 9999999999999999989


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+..+..+++.+....|++++|.....+-+.
T Consensus       200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         200 ADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            8999999999999999999999988766544

>KOG1130|consensus

Probab=99.59  E-value=1.6e-14  Score=126.83  Aligned_cols=274  Identities=13%  Similarity=0.091  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVNA  138 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~  138 (551)
                      -.+-..|..+++.|++...+.+|+.+++...++ .....+|..+|.+|+.+++|++|+++-..-+.+.  -.+..-.+.+
T Consensus        18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs   97 (639)
T KOG1130|consen   18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS   97 (639)
T ss_pred             HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence            445667899999999999999999999998774 3445678899999999999999999865433321  1111111223


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCC--------------------HHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQ--------------------YEEALR  192 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~--------------------~~~A~~  192 (551)
                      --++|.++...| .|++|+.+..+-+....      ....+++++|.+|...|+                    ++.|.+
T Consensus        98 sgNLGNtlKv~G-~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~  176 (639)
T KOG1130|consen   98 SGNLGNTLKVKG-AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK  176 (639)
T ss_pred             cccccchhhhhc-ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence            345999999999 99999999988776532      226789999999998874                    345556


Q ss_pred             HHHHHHhcCCCC------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccC
Q psy12713        193 NLDKTIALNPNF------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQED  260 (551)
Q Consensus       193 ~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~  260 (551)
                      +|..-+++....      ..++-++|..+|.+      |+++.|+..-+.-+.+....      -.++.++|.++.-.|+
T Consensus       177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLL------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             HHHHHHHHHHHhhhHHhhcchhcccCceeeee------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence            666555553332      22344555445544      99999998887766554221      3688899999999999


Q ss_pred             HHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc------CCHHHHHHHHHHHHHhC
Q psy12713        261 FDGAEEYFNRSIRVD----P--ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRG  328 (551)
Q Consensus       261 ~~~A~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g  328 (551)
                      ++.|+++|+..+.+.    .  ......+.+|..|.- ..++++|+.++.+-+.+..      ....+++.+|..+...|
T Consensus       251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG  329 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence            999999999876542    2  224567889999777 8999999999998776532      34678999999999999


Q ss_pred             CHHHHHHHHHHhccc
Q psy12713        329 RLEEAVKCFNKALPL  343 (551)
Q Consensus       329 ~~~~A~~~~~~a~~~  343 (551)
                      ..++|+.+.++.+++
T Consensus       330 ~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  330 EHRKALYFAELHLRS  344 (639)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999998887765

>KOG4340|consensus

Probab=99.58  E-value=2e-12  Score=109.10  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=177.0

Q ss_pred             HHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713         70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        70 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      .+.+..+|..|+.++..-.+.+|.   +...+..+|.||+...+|..|..+|++.-...|....++..    .+..+++.
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY----~AQSLY~A   91 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY----QAQSLYKA   91 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHHHHh
Confidence            347778899999999988888887   77888889999999999999999999988888876554433    66677777


Q ss_pred             cCCHHHHHHHHHHHHhc------------------------------CC--CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        150 ASDFTKAFADLDEAEKV------------------------------DP--NVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~------------------------------~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      + .+..|+.........                              -|  +..+...+.|.+.++.|+++.|++-|+.+
T Consensus        92 ~-i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   92 C-IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             c-ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence            7 676666555433221                              12  33556677777778888888888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh----CCCc-------------------------HHHH
Q psy12713        198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT----HSNV-------------------------VEAC  248 (551)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~  248 (551)
                      ++...-.+..-++++.++++.      +++..|++...+.++.    .|.-                         .+++
T Consensus       171 lqvsGyqpllAYniALaHy~~------~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf  244 (459)
T KOG4340|consen  171 LQVSGYQPLLAYNLALAHYSS------RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF  244 (459)
T ss_pred             HhhcCCCchhHHHHHHHHHhh------hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence            887777777777778777777      8888888777666543    2321                         1455


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      +..+.++++.|+++.|.+.+...--..  .-+|..+.+++..- . .+++.+...-+.-.++++|--++.+-++-.+|.+
T Consensus       245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK  322 (459)
T KOG4340|consen  245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK  322 (459)
T ss_pred             hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence            666777778888877776654332221  12355666666552 2 5677777777777777777667778888888887


Q ss_pred             hCCHHHHHHHHH
Q psy12713        327 RGRLEEAVKCFN  338 (551)
Q Consensus       327 ~g~~~~A~~~~~  338 (551)
                      ..-++-|-..+-
T Consensus       323 Neyf~lAADvLA  334 (459)
T KOG4340|consen  323 NEYFDLAADVLA  334 (459)
T ss_pred             hHHHhHHHHHHh
Confidence            777776666553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=5.8e-13  Score=112.67  Aligned_cols=154  Identities=14%  Similarity=0.206  Sum_probs=116.8

Q ss_pred             HHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713        105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  184 (551)
Q Consensus       105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  184 (551)
                      +..|+..|+++......++..  +|..             -+...+ +.++++..+++++..+|++++.|..+|.+|...
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~-------------~~~~~~-~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~   86 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLH-------------QFASQQ-TPEAQLQALQDKIRANPQNSEQWALLGEYYLWR   86 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Cccc-------------cccCch-hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Confidence            445777888777544432221  1211             111255 788888888888888898888999999999889


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhhcCCChhH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCH
Q psy12713        185 GQYEEALRNLDKTIALNPNFHVARAQRHFVV-HKMIVPGDRER--VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF  261 (551)
Q Consensus       185 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  261 (551)
                      |++++|+..|++++++.|++...+..++.++ ...      |+  .++|...++++++.+|+++.++..+|..+...|++
T Consensus        87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~------g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370         87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQA------GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence            9999999999988888888888888888764 344      55  58888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCHH
Q psy12713        262 DGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~  280 (551)
                      ++|+..++++++..|.+..
T Consensus       161 ~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        161 AQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHHHhhCCCCcc
Confidence            8888888888888776543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=1.4e-11  Score=108.76  Aligned_cols=287  Identities=12%  Similarity=0.054  Sum_probs=208.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF-HVARAQRHFVVHKM  218 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~  218 (551)
                      ..-|..-+..| +|.+|.....+.-+..+.....+..-+....++|+++.|-.++.++-+..+++ ......++......
T Consensus        88 ~~egl~~l~eG-~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEG-DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcC-cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            33566666778 99999999988887777777777778888888999999999999998885443 33444555444444


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHhcC
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAML-MLQARG  294 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~~~  294 (551)
                            |+++.|.....+++...|.++.+.....++|...|++.....++.+.-+..--+..   -+-+.+.. .++..+
T Consensus       167 ------~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         167 ------RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             ------CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence                  89999999999999999999999999999999999999998888777654322211   11111111 122222


Q ss_pred             CHHHHH---HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713        295 NVDEAI---KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN  371 (551)
Q Consensus       295 ~~~~A~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (551)
                      +-..+.   .+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. +...+.                
T Consensus       241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~----------------  303 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP----------------  303 (400)
T ss_pred             ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh----------------
Confidence            222222   244443333445688888999999999999999999999998765433 111110                


Q ss_pred             cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713        372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN  451 (551)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (551)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (400)
T COG3071         304 --------------------------------------------------------------------------------  303 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713        452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL  531 (551)
Q Consensus       452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  531 (551)
                             ...-++...=++..++.++..|+++..+..+|..+.+.+.|.+|..+|+.+++..|+.. .+..+|.++.+.|
T Consensus       304 -------~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g  375 (400)
T COG3071         304 -------RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLG  375 (400)
T ss_pred             -------hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcC
Confidence                   01115667777778888999999999999999999999999999999999999988764 4788899999888


Q ss_pred             hhhhhhh
Q psy12713        532 AELMAFS  538 (551)
Q Consensus       532 ~~~~a~~  538 (551)
                      +..+|-.
T Consensus       376 ~~~~A~~  382 (400)
T COG3071         376 EPEEAEQ  382 (400)
T ss_pred             ChHHHHH
Confidence            7766543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.56  E-value=5.6e-13  Score=133.46  Aligned_cols=226  Identities=11%  Similarity=0.006  Sum_probs=181.2

Q ss_pred             hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713        165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV  244 (551)
Q Consensus       165 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  244 (551)
                      ..+|.+..++..+...+...+++++|+..++.+++..|+....++.+|.+++..      +++.++.-.           
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------~~~~~~~lv-----------   87 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------RPLNDSNLL-----------   87 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------cchhhhhhh-----------
Confidence            457888999999999999999999999999999999999999999999866665      654444333           


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  324 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  324 (551)
                           .++.......++ .+++++...+...+++..+++.+|.||-. +|+.++|...++++++.+|+++.++.++|..|
T Consensus        88 -----~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~  160 (906)
T PRK14720         88 -----NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSY  160 (906)
T ss_pred             -----hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence                 344444445566 56666666777788888899999999544 99999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccc
Q psy12713        325 VQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRP  404 (551)
Q Consensus       325 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  404 (551)
                      ... +.++|+.++.+|+...-+.                                                         
T Consensus       161 ae~-dL~KA~~m~~KAV~~~i~~---------------------------------------------------------  182 (906)
T PRK14720        161 EEE-DKEKAITYLKKAIYRFIKK---------------------------------------------------------  182 (906)
T ss_pred             HHh-hHHHHHHHHHHHHHHHHhh---------------------------------------------------------
Confidence            999 9999999999998762111                                                         


Q ss_pred             cCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCC---
Q psy12713        405 ADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN---  481 (551)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---  481 (551)
                                                                                ++|.++..++.+.+..+|.   
T Consensus       183 ----------------------------------------------------------kq~~~~~e~W~k~~~~~~~d~d  204 (906)
T PRK14720        183 ----------------------------------------------------------KQYVGIEEIWSKLVHYNSDDFD  204 (906)
T ss_pred             ----------------------------------------------------------hcchHHHHHHHHHHhcCcccch
Confidence                                                                      2333444444444444443   


Q ss_pred             -----------------chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713        482 -----------------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST  530 (551)
Q Consensus       482 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  530 (551)
                                       ....+.-+=.+|...++|++++..++.+++.+|+|..++..++.+|...
T Consensus       205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k  270 (906)
T PRK14720        205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK  270 (906)
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence                             3445555558899999999999999999999999999999999999963

>KOG2376|consensus

Probab=99.56  E-value=6.3e-11  Score=109.60  Aligned_cols=232  Identities=16%  Similarity=0.176  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG  178 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  178 (551)
                      ..++.--..+...|+|++|.+...+++...|++.    .++.....+.++.+ +|++|+...+.-...... ....+..+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~----~a~~cKvValIq~~-ky~~ALk~ikk~~~~~~~-~~~~fEKA   86 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE----DAIRCKVVALIQLD-KYEDALKLIKKNGALLVI-NSFFFEKA   86 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH----hhHhhhHhhhhhhh-HHHHHHHHHHhcchhhhc-chhhHHHH
Confidence            3444445566788999999999999999999884    46666888999999 999999555543322221 22237899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q psy12713        179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ  258 (551)
Q Consensus       179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  258 (551)
                      .|.++++..++|+..++   ..++.+.......+.++|+.      |+|++|+..|+.+++.+.++.+........-...
T Consensus        87 Yc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a  157 (652)
T KOG2376|consen   87 YCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRL------ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA  157 (652)
T ss_pred             HHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHH------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            99999999999999999   45666667788888888888      9999999999999998877765543332222111


Q ss_pred             cCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------cC-------CHHHHHHHHH
Q psy12713        259 EDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISID--------KS-------CMFAYETLGT  322 (551)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--------~~-------~~~~~~~l~~  322 (551)
                      .  -.+ . ..+.....|+ +.+.+++.+.++.. .|+|.+|++.+++++.+.        .+       -..+...++.
T Consensus       158 ~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay  232 (652)
T KOG2376|consen  158 A--LQV-Q-LLQSVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY  232 (652)
T ss_pred             h--hhH-H-HHHhccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence            0  011 1 3334444444 56788999999777 999999999999995431        11       1346778999


Q ss_pred             HHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        323 IEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       323 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++..+|+.++|...|...+..+|.+...
T Consensus       233 VlQ~~Gqt~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  233 VLQLQGQTAEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence            9999999999999999999998877643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.55  E-value=2.6e-13  Score=121.44  Aligned_cols=264  Identities=19%  Similarity=0.157  Sum_probs=197.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      ..+.++-.|+|..++..++ ....++.  ...+....+.+++..+|+++..+......    + ++.  ..+...++..+
T Consensus         7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~--~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~----~-~~~--l~av~~la~y~   76 (290)
T PF04733_consen    7 TVRNQFYLGNYQQCINEAS-LKSFSPE--NKLERDFYQYRSYIALGQYDSVLSEIKKS----S-SPE--LQAVRLLAEYL   76 (290)
T ss_dssp             HHHHHHCTT-HHHHCHHHH-CHTSTCH--HHHHHHHHHHHHHHHTT-HHHHHHHS-TT----S-SCC--CHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhh-ccCCCch--hHHHHHHHHHHHHHHcCChhHHHHHhccC----C-Chh--HHHHHHHHHHH
Confidence            4567788999999998777 3344443  46778888999999999988766554331    1 222  22444566655


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713        147 LHAASDFTKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR  224 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (551)
                      ...+ +.+.++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++..+      
T Consensus        77 ~~~~-~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~------  144 (290)
T PF04733_consen   77 SSPS-DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKM------  144 (290)
T ss_dssp             CTST-THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT------
T ss_pred             hCcc-chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc------
Confidence            5555 67777777766554332  34556677788888899999999887764     4566666666677777      


Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                      ++++.|.+.++.+.+.+.+..-+....+++.+..|  ++.+|...|++..+..+.++..+..++.+++. +|++++|.+.
T Consensus       145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~  223 (290)
T PF04733_consen  145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEEL  223 (290)
T ss_dssp             T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            99999999999999888887777777777777666  69999999999988888899999999999888 9999999999


Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCHHHHHHH
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRL-EEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      +.+++..+|+++.++.+++.+....|+. +.+.+++.+.....|+++-+...
T Consensus       224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999999999999999998 66778888888889988765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=3.4e-12  Score=106.56  Aligned_cols=179  Identities=15%  Similarity=0.116  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHH
Q psy12713         77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA  156 (551)
Q Consensus        77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A  156 (551)
                      ...+...+-.....+|+   +..+ ..++..+...|+-+.+..+..++....|.+....    ..+|...+..| ++..|
T Consensus        49 ~~~a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll----~~~gk~~~~~g-~~~~A  119 (257)
T COG5010          49 TQGAAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL----AAQGKNQIRNG-NFGEA  119 (257)
T ss_pred             hhHHHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH----HHHHHHHHHhc-chHHH
Confidence            33466666667778887   7777 8888888999999998888888887787775433    33888888899 99999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713        157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN  236 (551)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  236 (551)
                      +..++++....|++..+|..+|.+|.+.|++++|...|.+++++.|+.+.+..+++..++..      |+++.|..++..
T Consensus       120 ~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~------gd~~~A~~lll~  193 (257)
T COG5010         120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR------GDLEDAETLLLP  193 (257)
T ss_pred             HHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc------CCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888777777      888888888888


Q ss_pred             HHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      +....+.+..+..+++.+....|++++|.....+
T Consensus       194 a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         194 AYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            8888887888888888888888888888776554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=4.9e-13  Score=107.21  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      ..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.+++. .|++++|+.++++++..+|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence            457788888999988899999999999999999999999999999999999999999777 8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      .++..++.+|.++...|++++|+..|+++++.+|++......
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  124 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL  124 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            999999999999999999999999999999999988765433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128|consensus

Probab=99.51  E-value=1e-12  Score=124.15  Aligned_cols=224  Identities=14%  Similarity=0.130  Sum_probs=194.6

Q ss_pred             hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713         95 HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY  174 (551)
Q Consensus        95 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  174 (551)
                      |........++..+...|=..+|+..+++.-            .|-....||...| +..+|..+..+-++ .|+++..|
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg-~~~kaeei~~q~le-k~~d~~ly  460 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLG-QHGKAEEINRQELE-KDPDPRLY  460 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhc-ccchHHHHHHHHhc-CCCcchhH
Confidence            3367778889999999999999999999843            4455888999999 99999999999998 67788888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy12713        175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV  254 (551)
Q Consensus       175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  254 (551)
                      ..+|.+.....-|++|.+..+....      .+...+|      ......++++++...++..++++|-....|+.+|.+
T Consensus       461 c~LGDv~~d~s~yEkawElsn~~sa------rA~r~~~------~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~  528 (777)
T KOG1128|consen  461 CLLGDVLHDPSLYEKAWELSNYISA------RAQRSLA------LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA  528 (777)
T ss_pred             HHhhhhccChHHHHHHHHHhhhhhH------HHHHhhc------cccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence            8888888777767777776655332      2333344      333345999999999999999999999999999999


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713        255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV  334 (551)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  334 (551)
                      ..+.++++.|...|..++..+|++..+|.+++..|+. .|+-.+|...+.++++.+-++...|.+.-.+....|.+++|+
T Consensus       529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            9999999999999999999999999999999999888 999999999999999999889999999999999999999999


Q ss_pred             HHHHHhccccc
Q psy12713        335 KCFNKALPLAR  345 (551)
Q Consensus       335 ~~~~~a~~~~~  345 (551)
                      +.+.+.+.+..
T Consensus       608 ~A~~rll~~~~  618 (777)
T KOG1128|consen  608 KAYHRLLDLRK  618 (777)
T ss_pred             HHHHHHHHhhh
Confidence            99999987643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.50  E-value=6.4e-12  Score=125.30  Aligned_cols=157  Identities=16%  Similarity=0.070  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK  232 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  232 (551)
                      ..+++.-........|++++++..+|.+....|.+++|...++.++++.|++..++..++.++.+.      +++++|+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~------~~~eeA~~  141 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ------QGIEAGRA  141 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------ccHHHHHH
Confidence            333444444445567888888888888888888888888888888888888888888888777777      88888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713        233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  312 (551)
                      .+++++...|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++.. .|+.++|...|+++++....
T Consensus       142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCc
Confidence            88888888888888888888888888888888888888888888888888888888555 88888888888888877654


Q ss_pred             CHHH
Q psy12713        313 CMFA  316 (551)
Q Consensus       313 ~~~~  316 (551)
                      -...
T Consensus       221 ~~~~  224 (694)
T PRK15179        221 GARK  224 (694)
T ss_pred             chHH
Confidence            4433

>KOG1130|consensus

Probab=99.48  E-value=1.4e-12  Score=114.98  Aligned_cols=116  Identities=13%  Similarity=0.031  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHH
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV------DPNVADSYY  175 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~  175 (551)
                      ..-|.-+++.|++...+..|+.+++...++-......|..+|..|+.++ +|++|+++-.--+.+      .-..+.+--
T Consensus        21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~-DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK-DYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh-hHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            3447778899999999999999999988887777778999999999999 999999875433322      222355667


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHh
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNPN------FHVARAQRHFVVHKM  218 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~~~~~~~  218 (551)
                      ++|.++-.+|.|++|+.+..+-+.+...      ...+++++|.+|...
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak  148 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK  148 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence            8999999999999999998887765322      345666777555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.48  E-value=2.7e-10  Score=122.35  Aligned_cols=383  Identities=18%  Similarity=0.113  Sum_probs=244.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-cCCCCchhHHHHHHHH
Q psy12713         64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE-DTSVDPKIKVNAHIKR  142 (551)
Q Consensus        64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l  142 (551)
                      +-..|..+...|++.+|+..+..+-..    ..........+......|++..+...+..+-. ....++.    .....
T Consensus       344 h~raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~----l~~~~  415 (903)
T PRK04841        344 HRAAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR----LVLLQ  415 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc----hHHHH
Confidence            344456667788888887765544211    12345556677778888988887777655411 1112222    22447


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-----HHH
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPN---------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-----VAR  208 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~  208 (551)
                      +.++...| ++++|...+..+....+.         .......++.++...|++++|...+++++...+...     .+.
T Consensus       416 a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~  494 (903)
T PRK04841        416 AWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT  494 (903)
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            77888899 999999999988764321         134455678888999999999999999998654432     223


Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Q psy12713        209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----  277 (551)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----  277 (551)
                      ..++.++...      |++++|...+++++......      ..++..+|.++...|++++|...+++++.....     
T Consensus       495 ~~lg~~~~~~------G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        495 SVLGEVHHCK------GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHc------CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            3455444444      99999999999998754321      245678899999999999999999998875221     


Q ss_pred             ---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        278 ---NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       278 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                         ....+..+|.+++. .|++++|...+.+++.....     ....+..+|.++...|++++|...+.++..+.+....
T Consensus       569 ~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~  647 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY  647 (903)
T ss_pred             ccHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence               12345567888777 89999999999998875321     2456667899999999999999999998765433211


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhcc
Q psy12713        350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS  429 (551)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (551)
                      ...........  .....              ...+....+...+...                                
T Consensus       648 ~~~~~~~~~~~--~~~~~--------------~~~g~~~~A~~~l~~~--------------------------------  679 (903)
T PRK04841        648 HSDWIANADKV--RLIYW--------------QMTGDKEAAANWLRQA--------------------------------  679 (903)
T ss_pred             cHhHhhHHHHH--HHHHH--------------HHCCCHHHHHHHHHhc--------------------------------
Confidence            00000000000  00000              0000001111111000                                


Q ss_pred             CCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCC------CchHHHhhhhhHHHHhcCHHHHH
Q psy12713        430 NDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEAL  503 (551)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~  503 (551)
                        .......  ...    ........+..+...|++++|+..+++++....      ....++..+|.++...|+.++|.
T Consensus       680 --~~~~~~~--~~~----~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~  751 (903)
T PRK04841        680 --PKPEFAN--NHF----LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ  751 (903)
T ss_pred             --CCCCCcc--chh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence              0000000  000    000112233336778999999999999988632      24568889999999999999999


Q ss_pred             HHHHHHhhcCCchHH
Q psy12713        504 RNLDKTIALNPNFHV  518 (551)
Q Consensus       504 ~~~~~al~~~p~~~~  518 (551)
                      ..+.+++++......
T Consensus       752 ~~L~~Al~la~~~g~  766 (903)
T PRK04841        752 RVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHHHhCccch
Confidence            999999999866543

>KOG1128|consensus

Probab=99.47  E-value=5.4e-12  Score=119.44  Aligned_cols=221  Identities=14%  Similarity=0.097  Sum_probs=191.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      -.......|..++..|-...|+.+|++           ...|-....||...|+..+|.....+-++ .|.++.    .|
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Er-----------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~----ly  460 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFER-----------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPR----LY  460 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHh-----------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcch----hH
Confidence            445566789999999999999999985           45677778899999999999999999988 444433    44


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.+..... -|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+. 
T Consensus       461 c~LGDv~~d~s-~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-  532 (777)
T KOG1128|consen  461 CLLGDVLHDPS-LYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-  532 (777)
T ss_pred             HHhhhhccChH-HHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-
Confidence            55777777777 677777766654      3446677788888899999999999999999999999999999999998 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                           ++++.|.+.|..++...|++..+|++++..|+..|+-.+|...++++++.+.++..+|-+...+... .|.+++|
T Consensus       533 -----ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda  606 (777)
T KOG1128|consen  533 -----EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDA  606 (777)
T ss_pred             -----hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHH
Confidence                 9999999999999999999999999999999999999999999999999998889999998888666 9999999


Q ss_pred             HHHHHHHHhcC
Q psy12713        300 IKLIEKAISID  310 (551)
Q Consensus       300 ~~~~~~~~~~~  310 (551)
                      ++.+.+.+...
T Consensus       607 ~~A~~rll~~~  617 (777)
T KOG1128|consen  607 IKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHHhh
Confidence            99999988653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=3.6e-12  Score=102.19  Aligned_cols=116  Identities=15%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713        159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV  238 (551)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  238 (551)
                      .+++++..+|++....+.+|.++...|++++|...+++++..+|.++..+..+|.++...      |++++|+..+++++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~   78 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML------KEYEEAIDAYALAA   78 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            455666666666666666666666666666666666666666666666666666655555      66666666666666


Q ss_pred             HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      ..+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus        79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666666666666544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.47  E-value=1.8e-10  Score=123.64  Aligned_cols=270  Identities=14%  Similarity=0.038  Sum_probs=186.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-----CchhHHH
Q psy12713         64 LLSKAKRAFEHEDYLTAIRHCTEEIES-TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-----DPKIKVN  137 (551)
Q Consensus        64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~  137 (551)
                      ....|......|++..+...+..+-.. ...   .+......+.++...|++++|...+..+....+.     .+.....
T Consensus       377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~---~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~  453 (903)
T PRK04841        377 LLQHGWSLFNQGELSLLEECLNALPWEVLLE---NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE  453 (903)
T ss_pred             HHHhHHHHHhcCChHHHHHHHHhCCHHHHhc---CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH
Confidence            344566666777777766665543110 011   2334567788888999999999999888764322     2233444


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-----DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HV  206 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~  206 (551)
                      ....++.++...| ++++|...+++++...+...     .+...+|.++...|++++|...+++++......      ..
T Consensus       454 ~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        454 FNALRAQVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            5556788889999 99999999999988544432     355778889999999999999999998764322      12


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-
Q psy12713        207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-  277 (551)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-  277 (551)
                      ....++.+++..      |++++|...+++++.....        ....+..+|.++...|++++|...+.+++..... 
T Consensus       533 ~~~~la~~~~~~------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        533 SLLQQSEILFAQ------GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            334455555555      9999999999998875221        1234567888999999999999999998875321 


Q ss_pred             ----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHH----HHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        278 ----NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE----TLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       278 ----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                          ....+..++.++.. .|++++|...+.++....+..   .....    .....+...|+.+.|..++.......
T Consensus       607 ~~~~~~~~~~~la~~~~~-~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~  683 (903)
T PRK04841        607 QPQQQLQCLAMLAKISLA-RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE  683 (903)
T ss_pred             CchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence                23455567888666 999999999999987653321   11111    12244556899999999988876533

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=1.1e-11  Score=123.77  Aligned_cols=136  Identities=11%  Similarity=0.040  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .++++..+|.+....|.+++|...++.+++..|++    ..+...++.++.+.+ ++++|+..+++++..+|+++.+++.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~-~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQ-GIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhc-cHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            44555555555555555555555555555555544    223333555555555 5555555555555555555555555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN  243 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  243 (551)
                      +|.++...|++++|+..|++++..+|++..++..+|.++...      |+.++|...|++++....+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~------G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR------GALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhCc
Confidence            555555555555555555555554444455555555444444      5555555555555444433

>KOG0553|consensus

Probab=99.45  E-value=1.7e-12  Score=110.50  Aligned_cols=111  Identities=30%  Similarity=0.443  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713        246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  325 (551)
Q Consensus       246 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (551)
                      +-+-.-|.-+++.++|.+|+..|.++|+++|.++..|.+++.+|.+ +|.++.|++.++.++.++|....+|..||.+|.
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            3455668888899999999999999999999999999999999777 999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713        326 QRGRLEEAVKCFNKALPLARDEAELSHIYSLR  357 (551)
Q Consensus       326 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  357 (551)
                      .+|++++|++.|+++++++|++...+..+...
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            99999999999999999999998766655433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.45  E-value=2e-11  Score=104.37  Aligned_cols=180  Identities=17%  Similarity=0.139  Sum_probs=123.4

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      +.++..++..|...+..|+|.+|+..|++++...|.++....+.+.+|.+++..|++++|+..+++.++..|+++.. ..
T Consensus         2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~   80 (203)
T PF13525_consen    2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DY   80 (203)
T ss_dssp             ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hh
Confidence            45788999999999999999999999999999999988899999999999999999999999999999999998865 57


Q ss_pred             HHHHHHHHHHHhcC----------CHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713        138 AHIKRAVVHLHAAS----------DFTKAFADLDEAEKVDPNVADSYY---QRGQIYCLFGQYEEALRNLDKTIALNPNF  204 (551)
Q Consensus       138 ~~~~la~~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~---~la~~~~~~~~~~~A~~~~~~~l~~~~~~  204 (551)
                      +++.+|.+++....          ...+|+..|+..+...|++..+-.   .+..+-.              .+      
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~--------------~l------  140 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN--------------RL------  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--------------HH------
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH--------------HH------
Confidence            88888888766530          345899999999999998753321   1111100              00      


Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHH
Q psy12713        205 HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A  264 (551)
                      ..--+..|..+++.      |.+..|+..++.+++..|+.   .+++..++..+...|..+.|
T Consensus       141 a~~e~~ia~~Y~~~------~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  141 AEHELYIARFYYKR------GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHCT------T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            01112233333333      66666666666666666654   66667777777777766643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=4.2e-12  Score=113.67  Aligned_cols=242  Identities=14%  Similarity=0.182  Sum_probs=179.8

Q ss_pred             CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713         56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      +++...+..+...++++..|+++.++.-....  ..|    ...+...++..+...++.+.++..++..+........  
T Consensus        30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~----~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~--  101 (290)
T PF04733_consen   30 SPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSP----ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESN--  101 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSC----CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CH--
T ss_pred             CchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CCh----hHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccccc--
Confidence            34456777888999999999998776544331  133    4455666666655545667777777666544322111  


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      .......|.++...| ++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.+.+.+........+++.
T Consensus       102 ~~~~~~~A~i~~~~~-~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~  175 (290)
T PF04733_consen  102 EIVQLLAATILFHEG-DYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHHHHCCCC-HHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            123344778888889 999999888754     56788888999999999999999999999998887766666666555


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      +..    ..+.+.+|...|++.....+.++..++.++.+++.+|++++|...+.+++..+|.++.++.+++.+... .|+
T Consensus       176 l~~----g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk  250 (290)
T PF04733_consen  176 LAT----GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGK  250 (290)
T ss_dssp             HHH----TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-
T ss_pred             HHh----CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCC
Confidence            544    114689999999999888889999999999999999999999999999999999999999999998676 888


Q ss_pred             H-HHHHHHHHHHHhcCcCCHHH
Q psy12713        296 V-DEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       296 ~-~~A~~~~~~~~~~~~~~~~~  316 (551)
                      . +.+.+++.+....+|+++.+
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             ChhHHHHHHHHHHHhCCCChHH
Confidence            7 66778888888889987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340|consensus

Probab=99.42  E-value=2e-11  Score=103.13  Aligned_cols=188  Identities=13%  Similarity=0.144  Sum_probs=145.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      +++.. +|..|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|.........+..++..      +
T Consensus        20 lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A------~   92 (459)
T KOG4340|consen   20 LIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA------C   92 (459)
T ss_pred             HHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh------c
Confidence            35666 8888888888888888888888888888888888888888888888888888777777777777777      8


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      .+..|+.....+.....-..+..-.-+.+....+++..+....++.-  ..+......+.|.+.++ .|++++|++-|+.
T Consensus        93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllyk-egqyEaAvqkFqa  169 (459)
T KOG4340|consen   93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYK-EGQYEAAVQKFQA  169 (459)
T ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeec-cccHHHHHHHHHH
Confidence            88888877766544321223344455666777788887777665532  12456777888888777 8999999999999


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +++...-++..-++++.++++.|+++.|+++....++.
T Consensus       170 AlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  170 ALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            99988888888899999999999999999888777654

>KOG0553|consensus

Probab=99.42  E-value=4e-12  Score=108.19  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ++.+-..|..++..++|.+|+..|.++|..+|.   ++..|.+++.+|.++|.++.|++.++.++.++|..    ..+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y----skay~  153 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY----SKAYG  153 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH----HHHHH
Confidence            344445555555555555555555555555555   55555555555555555555555555555555544    33444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      .+|.+|..+| ++.+|+..|++++.++|++...+.+|..+-
T Consensus       154 RLG~A~~~~g-k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  154 RLGLAYLALG-KYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             HHHHHHHccC-cHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            4555555555 555555555555555555554444444333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=1.1e-11  Score=96.58  Aligned_cols=110  Identities=16%  Similarity=0.155  Sum_probs=99.3

Q ss_pred             HHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713        238 VDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       238 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  316 (551)
                      ..+. ++..+..+.+|..+...|++++|...|+-+...+|.+...|+++|.++ +.+|++++|+..|.+++.++|+++.+
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            3455 667788899999999999999999999999999999999999999994 44999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +.++|.+++..|+.+.|.+.|+.++......+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            99999999999999999999999998874433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.41  E-value=8.6e-11  Score=102.71  Aligned_cols=91  Identities=10%  Similarity=0.101  Sum_probs=80.6

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      .++..++..|...+..|+|++|+..|++++...|.++....+.+.+|.++++.+++++|+..+++.++..|+++.. ..+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence            4678899999999999999999999999999999877777788999999999999999999999999999999876 567


Q ss_pred             HHHHHHHHHHhc
Q psy12713        139 HIKRAVVHLHAA  150 (551)
Q Consensus       139 ~~~la~~~~~~~  150 (551)
                      ++.+|.++...+
T Consensus       109 ~Y~~g~~~~~~~  120 (243)
T PRK10866        109 LYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHhhhhcc
Confidence            788887765444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=2.7e-09  Score=97.24  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL  281 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (551)
                      |....+++..+...+..      |++++|+..++.++...|+++..+...+.+++..++.++|.+.+++++..+|+.+..
T Consensus       303 ~~~~aa~YG~A~~~~~~------~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         303 RGGLAAQYGRALQTYLA------GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             ccchHHHHHHHHHHHHh------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            45555666666555555      666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       282 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      +.++|..++. .|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.....
T Consensus       377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            6666666555 66666666666666666666666666666666666666666655544433

>KOG2047|consensus

Probab=99.36  E-value=3.4e-08  Score=92.78  Aligned_cols=270  Identities=17%  Similarity=0.172  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhC-------------CchHHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTS-------------QSTKAIEDLTQ  123 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g-------------~~~~A~~~~~~  123 (551)
                      ..|..+|..|.+.|.|+.|...|++++...-.-     .++..+.+.-..+..+++             +.+-....|+.
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            456788999999999999999999998754321     112222222112222222             12223333444


Q ss_pred             Hhh------------cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC-----hhHHHHHHHHHHHhC
Q psy12713        124 LVE------------DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV-----ADSYYQRGQIYCLFG  185 (551)
Q Consensus       124 ~~~------------~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~  185 (551)
                      .+.            .+|++.    ..|  +-.+-+..| +..+-+..|..++.. +|..     ...|...|..|...|
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV----~eW--~kRV~l~e~-~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~  401 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNV----EEW--HKRVKLYEG-NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG  401 (835)
T ss_pred             HHhccchHHHHHHHhcCCccH----HHH--HhhhhhhcC-ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence            333            344442    222  333444556 666666666666543 4432     346666777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------------C------C
Q psy12713        186 QYEEALRNLDKTIALNPNF----HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------------S------N  243 (551)
Q Consensus       186 ~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------~------~  243 (551)
                      +.+.|...|+++.+..-..    ...|...|..-.+.      .+++.|+.+.+++....            |      .
T Consensus       402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr  475 (835)
T KOG2047|consen  402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR  475 (835)
T ss_pred             cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence            7777777777776653222    33444445444443      66666666666665321            1      1


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc--CCHHHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--SCMFAYETLG  321 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~  321 (551)
                      +..+|..++......|-++.....|++++++.--.|....+.|.. ++...-++++.+.|++.+.+.+  .-.+.|...-
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf-LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL  554 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF-LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL  554 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence            355666666666667777777777777776666666666666665 3335556677777777666643  2233333222


Q ss_pred             HHH---HHhCCHHHHHHHHHHhccccc
Q psy12713        322 TIE---VQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       322 ~~~---~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      ..+   +.--..+.|..+|++|++..|
T Consensus       555 tkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  555 TKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            211   122356667777777777666

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.35  E-value=3.5e-11  Score=93.87  Aligned_cols=101  Identities=8%  Similarity=0.023  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      ..+..+.+|..++..|++++|...|+-+...+|.+    ...|+++|.++..+| ++.+|+..|.+++.++|+++..+++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----~~y~~gLG~~~Q~~g-~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----FDYWFRLGECCQAQK-HWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCchHHHH
Confidence            67777788888888888888888888888888877    345566888888888 8888888888888888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      .|.|++..|+.+.|.+.|+.++....
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            88888888888888888888877763

>KOG2047|consensus

Probab=99.35  E-value=2.3e-08  Score=93.86  Aligned_cols=411  Identities=12%  Similarity=0.125  Sum_probs=241.1

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      +..|+.-...+..+|+...-...|.++|..-|- ..+..+|-..-......|-++.++..|++-++.+|....-      
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee------  174 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE------  174 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH------
Confidence            445666677788899999999999999988885 3355666666666667788889999999999998876332      


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc------------------------CCCC---------------------hhHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKV------------------------DPNV---------------------ADSYY  175 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~---------------------~~~~~  175 (551)
                       ....+...+ +.++|.+.+...+..                        +|+.                     ...|.
T Consensus       175 -yie~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~  252 (835)
T KOG2047|consen  175 -YIEYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC  252 (835)
T ss_pred             -HHHHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence             233455556 666666666554432                        2221                     23688


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHH-----HHHHHHHHHhh----cCC---ChhHHHHHHHHHHHH---
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNP---NFHVAR-----AQRHFVVHKMI----VPG---DRERVEQSLKEFRNF---  237 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~-----~~~~~~~~~~~----~~~---~~~~~~~A~~~~~~~---  237 (551)
                      .||..|.+.|.+++|...|++++..--   +....+     +.-..+..++.    ...   ..-+.+-....|+..   
T Consensus       253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            899999999999999999999987532   222111     11111111111    000   111233333444433   


Q ss_pred             ---------HHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        238 ---------VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPEN-----ASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       238 ---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                               +..+|.+..-|.....+  ..|+..+-+..|.+++.. +|.-     ...|...|..|.. .|+.+.|...
T Consensus       333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~-~~~l~~aRvi  409 (835)
T KOG2047|consen  333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN-NGDLDDARVI  409 (835)
T ss_pred             cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh-cCcHHHHHHH
Confidence                     45678888777765544  467777778888877753 4432     3467778887555 8888888888


Q ss_pred             HHHHHhcCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC------------------HHHHHHHHhHHHHH
Q psy12713        303 IEKAISIDKS----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD------------------EAELSHIYSLRDAA  360 (551)
Q Consensus       303 ~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~  360 (551)
                      |+++.+..-.    -..+|...|..-.+..+++.|.+.+++|......                  +..+|..|......
T Consensus       410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs  489 (835)
T KOG2047|consen  410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES  489 (835)
T ss_pred             HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence            8888776422    2567888888888888888888888888765322                  12245555444332


Q ss_pred             HHHHHHHHH-hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCc
Q psy12713        361 IAQMKVCER-YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDP  439 (551)
Q Consensus       361 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (551)
                      ..-.+..++ +.......-....+..++...++.                      -..+...-..+.+.-.+-..|...
T Consensus       490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEe----------------------h~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----------------------HKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hHHHHHHHHHHHcCCccCCCccHH
Confidence            222111111 000001111111111111111110                      011223333343433444455555


Q ss_pred             chhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCC-c-hHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713        440 TKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN-V-ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  512 (551)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  512 (551)
                      +.+.........  ..     .....+.|..+|++|++..|. . -.+|...+..-..-|--..|++.|++|-..
T Consensus       548 diW~tYLtkfi~--ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  548 DIWNTYLTKFIK--RY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHHHHHH--Hh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            554443333222  11     124688899999999998873 2 235666677777778888888888887654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.34  E-value=1.5e-09  Score=98.97  Aligned_cols=158  Identities=22%  Similarity=0.189  Sum_probs=142.8

Q ss_pred             CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713        168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA  247 (551)
Q Consensus       168 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  247 (551)
                      |....+++..+..++..|++++|+..++..+...|+++..+...+.++...      ++..+|.+.+++++..+|..+..
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~------nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA------NKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCccHH
Confidence            677889999999999999999999999999999999999999999777777      99999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      +.++|..+++.|++.+|+..++..+..+|+++..|..++..|-. +|+..+                 +....+..+...
T Consensus       377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~-----------------a~~A~AE~~~~~  438 (484)
T COG4783         377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAE-----------------ALLARAEGYALA  438 (484)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHH-----------------HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999666 786544                 445567778889


Q ss_pred             CCHHHHHHHHHHhcccc-cCHHH
Q psy12713        328 GRLEEAVKCFNKALPLA-RDEAE  349 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~-~~~~~  349 (551)
                      |++++|+..+..+.+.. .+.+.
T Consensus       439 G~~~~A~~~l~~A~~~~~~~~~~  461 (484)
T COG4783         439 GRLEQAIIFLMRASQQVKLGFPD  461 (484)
T ss_pred             CCHHHHHHHHHHHHHhccCCcHH
Confidence            99999999999998876 44444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.31  E-value=7.8e-10  Score=94.58  Aligned_cols=185  Identities=18%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---h
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---D  172 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~  172 (551)
                      ..+..++..|..++..|++.+|+..|++++...|.++.. ..+.+.+|.++...| +++.|+..+++.++..|+++   .
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA-PQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhh
Confidence            346677778888888888888888888888887776554 567777888888888 88888888888888777764   4


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH---H
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC---T  249 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~  249 (551)
                      +++.+|.++..+..-.         +                    ....+.+...+|+..|+..+...|++..+-   .
T Consensus        81 A~Y~~g~~~~~~~~~~---------~--------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~  131 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGI---------L--------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK  131 (203)
T ss_dssp             HHHHHHHHHHHHHHHH---------H---------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhCccc---------h--------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence            6666666655441100         0                    012333666777777777777777764221   1


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHH
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQ  326 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~  326 (551)
                      .+..+              +..+      ..--+.+|..|++ .|.+..|+..++.+++..|+.   ..++..++..|..
T Consensus       132 ~l~~l--------------~~~l------a~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  132 RLAEL--------------RNRL------AEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHHHH--------------HHHH------HHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--------------HHHH------HHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            11111              0000      1112334555554 566666666666666665554   3445556666666


Q ss_pred             hCCHHH
Q psy12713        327 RGRLEE  332 (551)
Q Consensus       327 ~g~~~~  332 (551)
                      +|..+.
T Consensus       191 l~~~~~  196 (203)
T PF13525_consen  191 LGLKQA  196 (203)
T ss_dssp             TT-HHH
T ss_pred             hCChHH
Confidence            665553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.31  E-value=1.6e-10  Score=93.15  Aligned_cols=136  Identities=22%  Similarity=0.218  Sum_probs=118.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .....|..+...+..++...+...++.++...|++++...+.+.+|.+++..|++++|...|+.++...|+ +.....+.
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~   88 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence            45667788888888999999999999999999997777899999999999999999999999999997754 45556678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      +.++.++...| ++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus        89 l~LA~~~~~~~-~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   89 LRLARILLQQG-QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            88999999999 99999999976 33444557788999999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.29  E-value=2.7e-09  Score=93.36  Aligned_cols=197  Identities=15%  Similarity=0.100  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DS  173 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~  173 (551)
                      .+..++..|..++..|++++|+..|++++...|..+. ...+.+.+|.++...+ ++++|+..+++.++.+|+++   .+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~-~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCcCCCchHHH
Confidence            4556777788888888888888888888888887643 3556677888888888 88888888888888877763   45


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---HHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---CTL  250 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~  250 (551)
                      ++.+|.++...+.-     .+.....++                 ....+.....+|+..|++.++..|++..+   ...
T Consensus       109 ~Y~~g~~~~~~~~~-----~~~~~~~~~-----------------~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866        109 LYMRGLTNMALDDS-----ALQGFFGVD-----------------RSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             HHHHHHhhhhcchh-----hhhhccCCC-----------------ccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            66666654433210     111111111                 11222344556667777777777765321   111


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHh
Q psy12713        251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQR  327 (551)
Q Consensus       251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  327 (551)
                      +..+...                    -..--+.+|..|++ .|.|..|+.-++.+++..|+.   .+++..++..|...
T Consensus       167 l~~l~~~--------------------la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l  225 (243)
T PRK10866        167 LVFLKDR--------------------LAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL  225 (243)
T ss_pred             HHHHHHH--------------------HHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence            1111000                    01112244555454 566666666666666555543   45555666666666


Q ss_pred             CCHHHHHHHHH
Q psy12713        328 GRLEEAVKCFN  338 (551)
Q Consensus       328 g~~~~A~~~~~  338 (551)
                      |..++|.....
T Consensus       226 g~~~~a~~~~~  236 (243)
T PRK10866        226 QLNAQADKVAK  236 (243)
T ss_pred             CChHHHHHHHH
Confidence            66666655443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.28  E-value=9.3e-11  Score=109.33  Aligned_cols=114  Identities=21%  Similarity=0.210  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      .+...|..++..|+|++|+..|++++..+|.   +..+++.+|.++...|++++|+..+++++.++|.+    ..+++.+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~l   76 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRK   76 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHH
Confidence            4667778888888888888888888888887   77778888888888888888888888888887776    3456667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  184 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  184 (551)
                      |.++...| ++++|+..|++++.++|+++.+...++.+....
T Consensus        77 g~~~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         77 GTACMKLE-EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888888 888888888888888887777777766665444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.28  E-value=1.2e-09  Score=88.23  Aligned_cols=199  Identities=16%  Similarity=0.187  Sum_probs=147.8

Q ss_pred             CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713        131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  210 (551)
Q Consensus       131 ~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  210 (551)
                      .++.++..++..|..|-..| -..-|.-.|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|...-+..+
T Consensus        60 ~~eeRA~l~fERGvlYDSlG-L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhh-HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            34455667788999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE--ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      +|..++..      |++.-|.+.+.+..+.+|++|-  .|..+.   ...-++.+|...+.+-.+...+....|...+ .
T Consensus       139 Rgi~~YY~------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~-~  208 (297)
T COG4785         139 RGIALYYG------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE-F  208 (297)
T ss_pred             cceeeeec------CchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH-H
Confidence            99777777      9999999999999999999873  222221   2334677777665544333333333333222 2


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        289 MLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       289 ~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      |   .|+..+ ...++++.....++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       209 y---LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         209 Y---LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             H---HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            1   233221 12233333322222       5789999999999999999999999887653

>KOG1941|consensus

Probab=99.26  E-value=2.7e-09  Score=92.98  Aligned_cols=249  Identities=14%  Similarity=0.147  Sum_probs=170.3

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVN  137 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~  137 (551)
                      .+......|..++...++++|+..+.+.+..-.+.......+-.+..+...+|.+++++.+--..++.  +-++......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677889999999999999999999998876652224445556667788888888887765544442  2334555667


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      ++.+++..+.... ++.+++.+-...+.+....     ......+|..+..++.++++++.|+.+++...++.+...   
T Consensus        85 a~lnlar~~e~l~-~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---  160 (518)
T KOG1941|consen   85 AYLNLARSNEKLC-EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---  160 (518)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee---
Confidence            8888888888888 8888888887777653322     234555666666666666666666666654333222111   


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----------HHHH
Q psy12713        213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------ASLY  282 (551)
Q Consensus       213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~  282 (551)
                                                     ...++..+|..+.+..++++|.-+..++.++-...          ..++
T Consensus       161 -------------------------------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l  209 (518)
T KOG1941|consen  161 -------------------------------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL  209 (518)
T ss_pred             -------------------------------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence                                           12355667777777777777777777766653211          2245


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      +.++.. ++.+|....|.++.+++.++.      +-.......+|.+|...|+.+.|..-|+.+....
T Consensus       210 yhmaVa-lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  210 YHMAVA-LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHH-HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            566666 555888888888888887653      2235567789999999999999999999987754

>KOG2053|consensus

Probab=99.25  E-value=1.4e-07  Score=92.33  Aligned_cols=242  Identities=12%  Similarity=0.072  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      +...+--......++|.+|+..+.+.++..|+   ...+....|.++.++|+.++|..+++..-...+++    ...+-.
T Consensus        10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D----~~tLq~   82 (932)
T KOG2053|consen   10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD----DLTLQF   82 (932)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc----hHHHHH
Confidence            34445566778899999999999999999998   88889999999999999999997777766666664    234556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      +-.+|..++ ++++|..+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+.+..++....+.+....-
T Consensus        83 l~~~y~d~~-~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~  160 (932)
T KOG2053|consen   83 LQNVYRDLG-KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS  160 (932)
T ss_pred             HHHHHHHHh-hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence            888999999 999999999999999998 888888888999999888777766666677787766655554444433111


Q ss_pred             CC----hhHHHHHHHHHHHHHHhC-CCcHH-HHHHHHHHHHhccCHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHhcC
Q psy12713        222 GD----RERVEQSLKEFRNFVDTH-SNVVE-ACTLFAQVLVDQEDFDGAEEYFN-RSIRVDPENASLYVHRAMLMLQARG  294 (551)
Q Consensus       222 ~~----~~~~~~A~~~~~~~~~~~-~~~~~-~~~~la~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~  294 (551)
                      ..    .--..-|...+++.++.. +-... =....-.++...|++++|...+. ...+..+.......+++.-++...+
T Consensus       161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~  240 (932)
T KOG2053|consen  161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN  240 (932)
T ss_pred             CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence            11    111233445555555544 21111 11223345556666777776662 2223333333333333322233344


Q ss_pred             CHHHHHHHHHHHHhcCcC
Q psy12713        295 NVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       295 ~~~~A~~~~~~~~~~~~~  312 (551)
                      ++.+-.+...+++..+++
T Consensus       241 ~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  241 RWQELFELSSRLLEKGND  258 (932)
T ss_pred             ChHHHHHHHHHHHHhCCc
Confidence            444444444444444444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.24  E-value=2.3e-10  Score=106.77  Aligned_cols=108  Identities=28%  Similarity=0.352  Sum_probs=73.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG  328 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  328 (551)
                      ...|..++..|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            3445666666777777777777777777777777777776555 677777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713        329 RLEEAVKCFNKALPLARDEAELSHIYSLR  357 (551)
Q Consensus       329 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  357 (551)
                      ++++|+..|++++.++|++..+...+..+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77777777777777777766655555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.23  E-value=2.2e-10  Score=89.61  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      +.++..|..+...|++++|+..|.+++...|+.+....+++.+|.++...|+++.|+..+++++...|+++.. ..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA-PDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc-cHHHHH
Confidence            4566677777777777777777777776666532335566667777777777777777777777666654322 234555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADS  173 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  173 (551)
                      +|.++...| ++++|+..+++++...|++..+
T Consensus        82 ~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELG-DKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhC-ChHHHHHHHHHHHHHCcCChhH
Confidence            667777777 7777777777777766665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.21  E-value=7e-10  Score=85.02  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      +...+..++..|...+..|+|++|++.|+.+....|.++....+.+.+|.+|+..|++++|+..+++.++++|.++.+ .
T Consensus         6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-d   84 (142)
T PF13512_consen    6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-D   84 (142)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-c
Confidence            345788999999999999999999999999999999888889999999999999999999999999999999999876 5


Q ss_pred             HHHHHHHHHHHHhc
Q psy12713        137 NAHIKRAVVHLHAA  150 (551)
Q Consensus       137 ~~~~~la~~~~~~~  150 (551)
                      .+++..|.+++.+.
T Consensus        85 Ya~Y~~gL~~~~~~   98 (142)
T PF13512_consen   85 YAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHHHHHh
Confidence            67888999988877

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=6.1e-10  Score=95.93  Aligned_cols=125  Identities=15%  Similarity=0.240  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKL  302 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~  302 (551)
                      ...+..+.-++.-+..+|++.+-|..+|.+|+..|++..|...|.+++++.|+++..+..+|.+++...|  ...++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            4467777888888999999999999999999999999999999999999999999999999999776433  46789999


Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      +++++..+|.+..+.+.+|..++..|++.+|...++..++..|.+..
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999999999999999999887655

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.20  E-value=1.9e-09  Score=89.91  Aligned_cols=122  Identities=11%  Similarity=0.125  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713         95 HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY  174 (551)
Q Consensus        95 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  174 (551)
                      +..+.+++.+|..+...|++++|+.+|+++++..|+.+. ...++..+|.++...| ++++|+..+++++...|++...+
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHH
Confidence            346778889999999999999999999999887765433 2457788999999999 99999999999999999888888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713        175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV  244 (551)
Q Consensus       175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  244 (551)
                      ..+|.++...|+...+...+..++                          ..+++|++.+++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~--------------------------~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAE--------------------------ALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHH--------------------------HHHHHHHHHHHHHHhhCchh
Confidence            899999988888777665544432                          44566777777777777665

>KOG3081|consensus

Probab=99.18  E-value=1.5e-07  Score=79.12  Aligned_cols=261  Identities=19%  Similarity=0.154  Sum_probs=190.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      +--.+.++-.|+|..++..-.+.-... .   ..+....+.+.|..+|++...+......-     .+.  ..+...++.
T Consensus        12 LF~iRn~fY~Gnyq~~ine~~~~~~~~-~---~~e~d~y~~raylAlg~~~~~~~eI~~~~-----~~~--lqAvr~~a~   80 (299)
T KOG3081|consen   12 LFNIRNYFYLGNYQQCINEAEKFSSSK-T---DVELDVYMYRAYLALGQYQIVISEIKEGK-----ATP--LQAVRLLAE   80 (299)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccc-c---hhHHHHHHHHHHHHccccccccccccccc-----CCh--HHHHHHHHH
Confidence            334667788999999998777654443 3   66777888899999999876655443322     111  334555666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      .....+ +.+.-+....+.+...  ..+......-|.+|..-|++++|.+.....     .+.++...-..++.++    
T Consensus        81 ~~~~e~-~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~----  150 (299)
T KOG3081|consen   81 YLELES-NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKM----  150 (299)
T ss_pred             HhhCcc-hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHH----
Confidence            666666 6666665555544332  223345566678899999999999988763     2344444444555555    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                        .+.+-|.+.++++.+++.+.  .+..+|..+..    .++..+|.-+|+..-+..|..+......+.+++. +|++++
T Consensus       151 --~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~ee  225 (299)
T KOG3081|consen  151 --HRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEE  225 (299)
T ss_pred             --HHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHH
Confidence              99999999999998876554  33444444432    3478999999999999888889999999999998 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcccccCHHHHH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALPLARDEAELS  351 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~  351 (551)
                      |...++.++..++++++++.++..+-...|...++. +.+.+.....|+++-+.
T Consensus       226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  226 AESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            999999999999999999999999999999887665 45566667778877653

>PRK11906 transcriptional regulator; Provisional

Probab=99.17  E-value=1.3e-08  Score=93.49  Aligned_cols=182  Identities=12%  Similarity=0.048  Sum_probs=149.1

Q ss_pred             HhcCCCCh---hHH----HHHHHHHHHhCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---hcCCChhHH
Q psy12713        164 EKVDPNVA---DSY----YQRGQIYCLFGQ---YEEALRNLDKTI---ALNPNFHVARAQRHFVVHKM---IVPGDRERV  227 (551)
Q Consensus       164 ~~~~~~~~---~~~----~~la~~~~~~~~---~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  227 (551)
                      ....|.+.   ++|    +.+|......+.   .+.|+..|.+++   .++|....++..++.|++..   .........
T Consensus       241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~  320 (458)
T PRK11906        241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA  320 (458)
T ss_pred             hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            33345555   444    666666655553   567889999999   99999999999999999877   122257788


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      .+|....+++++.+|.++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+... .|+.++|.+.+++++
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i~~al  399 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999999999777 999999999999999


Q ss_pred             hcCcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhcccccC
Q psy12713        308 SIDKSCMFAYETLGTI-EVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       308 ~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      +++|....+-...-++ .+-....++|+..|-+-.+....
T Consensus       400 rLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (458)
T PRK11906        400 QLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESH  439 (458)
T ss_pred             ccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccc
Confidence            9999876655544444 45567788999988776554433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.16  E-value=2.3e-09  Score=86.45  Aligned_cols=115  Identities=22%  Similarity=0.309  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~  298 (551)
                      ++...+...++..+..+|+.   ..+.+.+|.++...|++++|...|+.++...|+.   +.+.+.++.+++. .|++++
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~  103 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDE  103 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHH
Confidence            77778888888888888888   4677889999999999999999999999987665   3477889999887 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      |+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999763 3344457788999999999999999999999875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1.2e-09  Score=85.45  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSY  174 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~  174 (551)
                      ++.++.+|..+...|++++|+..|.+++...|+++.. ..+++.+|.++...| +++.|+..++.++..+|++   +.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA-PNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            3577889999999999999999999999988876432 456777999999999 9999999999999988875   5789


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  208 (551)
Q Consensus       175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  208 (551)
                      ..+|.++...|++++|+..+++++...|++..+.
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            9999999999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.15  E-value=1.5e-09  Score=95.54  Aligned_cols=113  Identities=15%  Similarity=0.070  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHH-HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         60 HELDLLSKAKRA-FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        60 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      .....|..|..+ +..|+|++|+..|+..+...|+++..+.+++.+|.+|+..|++++|+..|+++++..|+++.. ..+
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-ADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hHH
Confidence            557788899887 567999999999999999999866667899999999999999999999999999999987665 678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY  174 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  174 (551)
                      ++.+|.++...| ++++|...|+++++..|+...+.
T Consensus       220 l~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHH
Confidence            888999999999 99999999999999999876543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2.6e-09  Score=92.18  Aligned_cols=126  Identities=14%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      ..+.-+.-++.-+..+|++++.|..+|.+|+.+|++..|...|.+++++.|++++.+..++.+++..   .......++.
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~---a~~~~ta~a~  213 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ---AGQQMTAKAR  213 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCcccHHHH
Confidence            4667777788888889999999999999999999999999999999999999999998888877654   3445667888


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      ..+++++..+|.+..+...+|..++..|++.+|...++..++..|.+..
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            8889999999999999889999999999999999999888888776543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.14  E-value=3.1e-08  Score=89.74  Aligned_cols=212  Identities=17%  Similarity=0.123  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY  175 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  175 (551)
                      .+.+...|.+|...|++++|...|.++....  .+++.....++...+.++ ... ++++|+.++++++.+         
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~-~~~~Ai~~~~~A~~~---------  103 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKG-DPDEAIECYEKAIEI---------  103 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHT-THHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhh-CHHHHHHHHHHHHHH---------
Confidence            3444455777888888888888888876642  233333344455444444 444 677777777777643         


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHhCCC--c----HHHH
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR-ERVEQSLKEFRNFVDTHSN--V----VEAC  248 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~  248 (551)
                           |...|++..|-..+.++-                    .++... |++++|++.|++++.....  .    ...+
T Consensus       104 -----y~~~G~~~~aA~~~~~lA--------------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen  104 -----YREAGRFSQAAKCLKELA--------------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL  158 (282)
T ss_dssp             -----HHHCT-HHHHHHHHHHHH--------------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             -----HHhcCcHHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence                 333344433333333222                    223333 5555555555555543211  1    3456


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-----HHH
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-----MFA  316 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~  316 (551)
                      ..+|.++...|+|++|+..|+++....-++       ...++..+.+++. .|++..|...+++....+|..     ...
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F~~s~E~~~  237 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYVAARKALERYCSQDPSFASSREYKF  237 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            788889999999999999999887653221       1244566677777 899999999999998888754     233


Q ss_pred             HHHHHHHHHH--hCCHHHHHHHHHHhcccccC
Q psy12713        317 YETLGTIEVQ--RGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       317 ~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~  346 (551)
                      ...+-.++..  ...+++|+..|++...++|=
T Consensus       238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            3344444432  34688888888888777653

>KOG4648|consensus

Probab=99.13  E-value=1.9e-10  Score=99.34  Aligned_cols=245  Identities=14%  Similarity=0.098  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      .-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++ .+.+..|...++.++.++.....+|...|.+-..+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCC
Q psy12713        328 GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK  407 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  407 (551)
                      |+..+|.+.++.++.+.|++.++...+..........-..++-       +....+......+   +          ...
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT-------~G~~~A~Q~~~Q~---l----------~~K  238 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST-------PGFTPARQGMIQI---L----------PIK  238 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC-------CCCCccccchhhh---c----------ccc
Confidence            9999999999999999999888776665442211111111110       0000000000000   0          000


Q ss_pred             CCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHh
Q psy12713        408 GGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY  487 (551)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  487 (551)
                      ..+...+..+.|...+..+.+.             +........+-.....+...-++++|+....+++..+|.......
T Consensus       239 ~~G~~Fsk~~~~~~~i~~~~~~-------------~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s  305 (536)
T KOG4648|consen  239 KPGYKFSKKAMRSVPVVDVVSP-------------RATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS  305 (536)
T ss_pred             CcchhhhhhhccccceeEeecc-------------ccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence            0000011111111111111110             000000001111111144445677888888888877777777777


Q ss_pred             hhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713        488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  526 (551)
Q Consensus       488 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  526 (551)
                      ..|.+---.|...++...++.++.+.|.+..+...+...
T Consensus       306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~  344 (536)
T KOG4648|consen  306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK  344 (536)
T ss_pred             CCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence            788888888888888888888888888877666555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.13  E-value=1.7e-08  Score=85.13  Aligned_cols=193  Identities=13%  Similarity=0.074  Sum_probs=133.7

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+..++..|...++.|+|++|+..|+.+....|.++....+...++.++++.+++++|+...++-+.+.|.++.. ..+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~  110 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA  110 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence            3688999999999999999999999999999999988889999999999999999999999999999999999876 456


Q ss_pred             HHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        139 HIKRAVVHLHAAS-------DFTKAFADLDEAEKVDPNVADS---YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  208 (551)
Q Consensus       139 ~~~la~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  208 (551)
                      ++..|.+++..-.       -...|+..|+..+...|++.-+   ...+..+-       .++.-             --
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~-------d~LA~-------------~E  170 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN-------DALAG-------------HE  170 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH-------HHHHH-------------HH
Confidence            6777777654320       3467888888999999987322   11111110       00000             01


Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713        209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (551)
                      ...+..+.+.      |.+..|+..++.+++..|+.   .+++..+..+|...|-.++|...-.-.-...|++
T Consensus       171 m~IaryY~kr------~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         171 MAIARYYLKR------GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHh------cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            1223223333      66666666666666655544   3456666667777777777765543333333443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=4.8e-09  Score=87.24  Aligned_cols=112  Identities=12%  Similarity=0.090  Sum_probs=85.2

Q ss_pred             HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713         72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS  151 (551)
Q Consensus        72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  151 (551)
                      +-.++|..+...+...++..+. .....+++.+|.++...|++++|+..|++++.+.|+... ...++..+|.++...| 
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~~~~~~g-   86 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGLIHTSNG-   86 (168)
T ss_pred             ccccccccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHcC-
Confidence            3344566666666666555443 235777888999999999999999999999888765432 2457788999999999 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                      ++++|+..+++++..+|.....+..+|.++...|+
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            99999999999999988888888888888885443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.12  E-value=1.1e-10  Score=79.42  Aligned_cols=61  Identities=28%  Similarity=0.535  Sum_probs=56.1

Q ss_pred             chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchH
Q psy12713        457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  517 (551)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  517 (551)
                      ..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3467789999999999999999999999999999999999999999999999999999986

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.10  E-value=5.4e-09  Score=89.08  Aligned_cols=115  Identities=17%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +....|..|..++..|+|..|...|..-++..|++++.+.+++.||.+++.+|+++.|...|..+.+..|+++.. ..++
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-pdal  218 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-PDAL  218 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-hHHH
Confidence            345589999999999999999999999999999998899999999999999999999999999999999988775 5788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      +.+|.+...+| +.++|...|+++++..|+...+...
T Consensus       219 lKlg~~~~~l~-~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         219 LKLGVSLGRLG-NTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHhc-CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            99999999999 9999999999999999998766543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.10  E-value=4.9e-10  Score=77.41  Aligned_cols=67  Identities=21%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCC
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTS  129 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~  129 (551)
                      ++..++..|..++..|+|++|+..|+++++.+|+   ++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5788999999999999999999999999999998   9999999999999999 79999999999999887

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.09  E-value=1.8e-09  Score=80.87  Aligned_cols=99  Identities=31%  Similarity=0.494  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ++..+|.++...|++++|+..++++++..|.+..++..+|.++.. .|++++|+.++++++...|.+..++..+|.++..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            467788888899999999999999999888888888889998777 8999999999999999988888889999999999


Q ss_pred             hCCHHHHHHHHHHhcccccC
Q psy12713        327 RGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~  346 (551)
                      .|++++|...+.+++...|+
T Consensus        81 ~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          81 LGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHhHHHHHHHHHHHHccCCC
Confidence            99999999999988887763

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=4.3e-10  Score=77.67  Aligned_cols=66  Identities=36%  Similarity=0.508  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhccccc
Q psy12713        279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVKCFNKALPLAR  345 (551)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~  345 (551)
                      +..|..+|.+++. .|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445555555444 555555555555555555555555555555555555 45555555555555544

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=7.2e-09  Score=83.80  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=81.1

Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      ..|...|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|....+..+.|..++- .|+++-
T Consensus        73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L  151 (297)
T COG4785          73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL  151 (297)
T ss_pred             chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence            4445558888888888888888898888888888888888999999999988888888888888888888666 888888


Q ss_pred             HHHHHHHHHhcCcCCHH
Q psy12713        299 AIKLIEKAISIDKSCMF  315 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~  315 (551)
                      |.+.+.+..+.+|++|.
T Consensus       152 Aq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         152 AQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hHHHHHHHHhcCCCChH
Confidence            88888888888888764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.08  E-value=7.2e-10  Score=75.42  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP  132 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  132 (551)
                      +.+|..++..|++++|+..|+++++..|+   ++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46788999999999999999999999998   999999999999999999999999999999998864

>PRK11906 transcriptional regulator; Provisional

Probab=99.07  E-value=1.6e-08  Score=92.99  Aligned_cols=160  Identities=18%  Similarity=0.152  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhhh---cHHHHHHHHHHHh---hcCCCchhHHHHHHHHHHHHHHh---------CCchHHHHHHHHHhhc
Q psy12713         63 DLLSKAKRAFEHE---DYLTAIRHCTEEI---ESTSSNHTKALARLLRATVYIFT---------SQSTKAIEDLTQLVED  127 (551)
Q Consensus        63 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~  127 (551)
                      .++.+|...+..+   ..+.|+.+|.+++   ..+|.   .+.++..++.|++..         .+..+|....++++++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel  333 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI  333 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence            6688888886655   5678999999999   88888   999999999998865         1345688888888889


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      +|.++.    ++..+|.+....+ +++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+
T Consensus       334 d~~Da~----a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        334 TTVDGK----ILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             CCCCHH----HHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            888844    5566888888888 89999999999999999999999999999999999999999999999998876554


Q ss_pred             HHHHHHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12713        208 RAQRHFV-VHKMIVPGDRERVEQSLKEFRN  236 (551)
Q Consensus       208 ~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~  236 (551)
                      -...-++ .|.-      ...+.|+..|-+
T Consensus       409 ~~~~~~~~~~~~------~~~~~~~~~~~~  432 (458)
T PRK11906        409 VVIKECVDMYVP------NPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHHcC------CchhhhHHHHhh
Confidence            4333322 2222      456666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.06  E-value=5.5e-10  Score=101.13  Aligned_cols=140  Identities=16%  Similarity=0.120  Sum_probs=103.5

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC--Cc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS--SN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKI  134 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~  134 (551)
                      .++.+-..|..+-..|++++|...|.++....-  ++ .....++...+.++.+. ++++|+.++++++.+  ..+++..
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            456677778888889999999999999865432  11 23456666666666554 999999999999986  3445555


Q ss_pred             HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713        135 KVNAHIKRAVVHLHA-ASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALN  201 (551)
Q Consensus       135 ~~~~~~~la~~~~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  201 (551)
                      ....+..+|.+|... | ++++|+++|++++......      ..++..+|.++...|+|++|++.|+++....
T Consensus       113 aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            567888899999998 8 9999999999998863222      4567788889999999999999998887654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.05  E-value=1.7e-06  Score=77.81  Aligned_cols=226  Identities=22%  Similarity=0.292  Sum_probs=161.2

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh--cCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE--DTSVDPKIKVNAHIKRAVVHLHAAS  151 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~  151 (551)
                      .+.+..+...+...+...+.. .........+..+...+++..+...+.....  ..+..    ...+...+..+...+ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-  109 (291)
T COG0457          36 LGELAEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL----AEALLNLGLLLEALG-  109 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHHHh-
Confidence            467777777788777777640 0256777788888888888888888888776  33333    445666888888888 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQ-IYCLFGQYEEALRNLDKTIALNPN---FHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ++..++..+..++...+.........+. ++...|+++.|...+.+++...|.   ........+..+...      +++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  183 (291)
T COG0457         110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL------GRY  183 (291)
T ss_pred             hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh------cCH
Confidence            8888888888888877776555555555 788888888888888888776652   333333333322233      777


Q ss_pred             HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      +.++..+.+++...+. ....+..++..+...++++.|...+..++...|.....+...+..+. ..+.++++...+.++
T Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  262 (291)
T COG0457         184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKA  262 (291)
T ss_pred             HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHH
Confidence            7888888888877777 57777777777777777788888888877777776666666666656 467777777777777


Q ss_pred             HhcCcC
Q psy12713        307 ISIDKS  312 (551)
Q Consensus       307 ~~~~~~  312 (551)
                      +...|.
T Consensus       263 ~~~~~~  268 (291)
T COG0457         263 LELDPD  268 (291)
T ss_pred             HHhCcc
Confidence            777765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.05  E-value=2.6e-08  Score=96.81  Aligned_cols=86  Identities=22%  Similarity=0.301  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713        262 DGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK  339 (551)
Q Consensus       262 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  339 (551)
                      ..+.....+++..  +|.++.++..+|..... .|++++|...+++++.++| +..+|..+|.++...|+.++|++.|++
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444432  44445555555555444 5666666666666666666 355666666666666666666666666


Q ss_pred             hcccccCHHH
Q psy12713        340 ALPLARDEAE  349 (551)
Q Consensus       340 a~~~~~~~~~  349 (551)
                      |+.++|.++.
T Consensus       479 A~~L~P~~pt  488 (517)
T PRK10153        479 AFNLRPGENT  488 (517)
T ss_pred             HHhcCCCCch
Confidence            6666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=6.9e-09  Score=86.55  Aligned_cols=120  Identities=20%  Similarity=0.248  Sum_probs=100.2

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++.+|..+...|++++|+.+|++++...|+.+....++..+|.++...|++++|+..+++++...|.+.    .++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~  109 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP----SAL  109 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHH
Confidence            6778999999999999999999999999988775323467999999999999999999999999999999874    455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  204 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  204 (551)
                      ..+|.++...| +...+...+..++.                    .+++|++++++++..+|++
T Consensus       110 ~~lg~~~~~~g-~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRG-EKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcC-ChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            66999999999 87776666555432                    3677888888888888876

>KOG1070|consensus

Probab=99.04  E-value=2.1e-07  Score=95.18  Aligned_cols=219  Identities=12%  Similarity=0.063  Sum_probs=153.2

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713         80 AIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE-DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA  158 (551)
Q Consensus        80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~  158 (551)
                      ..+-|.+.+..+|+   ....|......+...++.++|.+.+++++. +++...+-..+.|..+-+....-| .-+.-.+
T Consensus      1443 saeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~k 1518 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKK 1518 (1710)
T ss_pred             CHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHH
Confidence            34556667777777   677777777777777888888888888776 355544444555555555555556 6666667


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713        159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV  238 (551)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  238 (551)
                      .|++|.+... ...++..|..+|...+++++|.++++..++...+....|...+..+++.      ++-+.|...+.+++
T Consensus      1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~------ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ------NEAEAARELLKRAL 1591 (1710)
T ss_pred             HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc------cHHHHHHHHHHHHH
Confidence            7777766532 2456677777777777788888888777777766677777777555554      77777777777777


Q ss_pred             HhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713        239 DTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID  310 (551)
Q Consensus       239 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  310 (551)
                      +.-|.  +.+.....|.+-++.|+.+.+...|+..+...|...+.|..+...-.. .|+.+-+...|++++...
T Consensus      1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCCHHHHHHHHHHHHhcC
Confidence            77776  566666777777777777777777777777777777777777666444 777777777777777653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.04  E-value=6.6e-10  Score=80.01  Aligned_cols=81  Identities=30%  Similarity=0.488  Sum_probs=49.9

Q ss_pred             ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK  335 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  335 (551)
                      .|+++.|+..++++++..|.  +...++.+|.++++ .|++++|+.++++ ...+|.++...+.+|.++..+|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666666666666666663  34455556666666 6666666666666 55556555666666666666666666666


Q ss_pred             HHHHh
Q psy12713        336 CFNKA  340 (551)
Q Consensus       336 ~~~~a  340 (551)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            66653

>KOG0543|consensus

Probab=99.04  E-value=1.5e-08  Score=90.68  Aligned_cols=133  Identities=23%  Similarity=0.335  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCC----C-------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSV----D-------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV  170 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~-------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~  170 (551)
                      -..|..+++.|+|..|...|++++..-+.    +       ......++.+++.|+.+++ +|..|+..+++++..+|+|
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK-EYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh-hHHHHHHHHHHHHhcCCCc
Confidence            34455666666666666666665553211    1       1123447788999999999 9999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH-HHHHHHHHHHHHhC
Q psy12713        171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV-EQSLKEFRNFVDTH  241 (551)
Q Consensus       171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~  241 (551)
                      ..+++..|.++..+|+++.|+..|++++++.|.+..+...+..+.-+.      ..+ +...+.|..++...
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~------~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI------REYEEKEKKMYANMFAKL  356 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999988888777666555      333 33356666666543

>KOG0543|consensus

Probab=99.03  E-value=9.6e-09  Score=91.93  Aligned_cols=137  Identities=17%  Similarity=0.166  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT  128 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  128 (551)
                      +...-..|..+++.|+|..|...|++++..-+..            .....++.+++.|+.++++|.+|+....+++..+
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            3445567899999999999999999988754421            3456788999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH-HHHHHHHHhcCC
Q psy12713        129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA-LRNLDKTIALNP  202 (551)
Q Consensus       129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~l~~~~  202 (551)
                      |+|    ..+++..|.++...| +++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|.+++...+
T Consensus       288 ~~N----~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  288 PNN----VKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCc----hhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999    568888999999999 999999999999999999999999998888877766654 778888876544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=3.2e-08  Score=96.24  Aligned_cols=140  Identities=19%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             cchHHHHHHHHHHHhhh---cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--------chHHHHHHHHHhhc
Q psy12713         59 SHELDLLSKAKRAFEHE---DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ--------STKAIEDLTQLVED  127 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~  127 (551)
                      ..+-.++.+|..++..+   ++..|+.+|+++++.+|+   .+.++..++.++.....        ...+.....+++..
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            36778899999887654   488999999999999999   89999998888765432        33455556665554


Q ss_pred             --CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        128 --TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       128 --~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                        .|.++    .++..+|......| ++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++|.++
T Consensus       414 ~~~~~~~----~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        414 PELNVLP----RIYEILAVQALVKG-KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ccCcCCh----HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence              44443    35566888888889 99999999999999999 578999999999999999999999999999999987


Q ss_pred             HH
Q psy12713        206 VA  207 (551)
Q Consensus       206 ~~  207 (551)
                      ..
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            53

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.02  E-value=8.6e-09  Score=77.11  Aligned_cols=95  Identities=19%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy12713        175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV  254 (551)
Q Consensus       175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  254 (551)
                      +.+|.++...|++++|+..++++++..|.+...+..++.++...      +++++|+..+++++...|.+..++..+|.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL------GKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            33444444444444444444444444444333333333333333      444444444444444444444444444444


Q ss_pred             HHhccCHHHHHHHHHHHHhcC
Q psy12713        255 LVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~  275 (551)
                      +...|++++|...+.+++...
T Consensus        78 ~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          78 YYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHHHhHHHHHHHHHHHHccC
Confidence            444444444444444444433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.01  E-value=9.2e-10  Score=79.27  Aligned_cols=81  Identities=25%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      |+++.|+..++++++..|.++  ....++.+|.+++..| ++++|+..+++ ...+|.++...+.+|.++..+|++++|+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            444444444444444444321  1223333444444444 44444444444 4444444444444444444444444444


Q ss_pred             HHHHH
Q psy12713        192 RNLDK  196 (551)
Q Consensus       192 ~~~~~  196 (551)
                      +.+++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            44443

>KOG4648|consensus

Probab=99.01  E-value=2.4e-10  Score=98.71  Aligned_cols=228  Identities=14%  Similarity=0.049  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713        101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI  180 (551)
Q Consensus       101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  180 (551)
                      +-..|..|+++|.|++|+.+|.+++...|.++....+    .+..|++.. .+..|...+..++.++.....+|..+|..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~N----RA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHIN----RALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhh----HHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            3456777777777777777777777777777654444    777777777 77777777777777777777777777777


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---------HHHH
Q psy12713        181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---------CTLF  251 (551)
Q Consensus       181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~l  251 (551)
                      -..+|...+|.+.++.++.+.|++.+....++.+.          ...++.    -+.+..|....+         .-.-
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----------Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~  240 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----------SLRERK----IATKSTPGFTPARQGMIQILPIKKP  240 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----------chHhhh----HHhhcCCCCCccccchhhhccccCc
Confidence            77777788888888888877777655443333221          111110    011111111111         1223


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                      |..+...|.++.++.++.+.+....++.....+ +..+.. ..+++.++....+++..+|.........|.+-.-.|...
T Consensus       241 G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~K-I~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~  318 (536)
T KOG4648|consen  241 GYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDK-IFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSK  318 (536)
T ss_pred             chhhhhhhccccceeEeeccccccCccccCccc-HHHHHH-HhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhh
Confidence            555667778888888877766655554443333 444444 677888888888888887776666666677777778888


Q ss_pred             HHHHHHHHhcccccCHHH
Q psy12713        332 EAVKCFNKALPLARDEAE  349 (551)
Q Consensus       332 ~A~~~~~~a~~~~~~~~~  349 (551)
                      ++...++.++.+.|.+..
T Consensus       319 E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  319 EVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             hcCcchhheeeecccccc
Confidence            899999999998887654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.01  E-value=7.8e-10  Score=76.17  Aligned_cols=67  Identities=21%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713        460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  526 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  526 (551)
                      ...|++++|+..|++++..+|+++++++.+|.+|...|++++|...+++++..+|+++..+..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            3568999999999999999999999999999999999999999999999999999998888777653

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.00  E-value=1.4e-06  Score=78.21  Aligned_cols=226  Identities=25%  Similarity=0.383  Sum_probs=191.9

Q ss_pred             hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHH
Q psy12713        111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYE  188 (551)
Q Consensus       111 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~  188 (551)
                      .+.+..+...+...+...+....  .......+..+...+ ++..+...+.....  ..+.....+...+..+...+++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDL--AGLLLLLALALLKLG-RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE  112 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccc--hHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence            46777788888888877665311  234456888999999 99999999999997  68888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhhcCCChhHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhccCHHHH
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHF-VVHKMIVPGDRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A  264 (551)
                      .++..+..++...+.........+. ++...      |+++.|...+.+++...|   .........+..+...++++.|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  186 (291)
T COG0457         113 EALELLEKALALDPDPDLAEALLALGALYEL------GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA  186 (291)
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence            9999999999988877555554554 55555      999999999999988776   3556677777778899999999


Q ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        265 EEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       265 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +..+.+++...+. ....+..++..+.. .++++.|...+..++...|.....+..++..+...+.++++...+.+++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         187 LELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999 68899999999666 899999999999999999987788888888888778899999999999999


Q ss_pred             ccC
Q psy12713        344 ARD  346 (551)
Q Consensus       344 ~~~  346 (551)
                      .|.
T Consensus       266 ~~~  268 (291)
T COG0457         266 DPD  268 (291)
T ss_pred             Ccc
Confidence            887

>PRK15331 chaperone protein SicA; Provisional

Probab=99.00  E-value=1e-08  Score=80.54  Aligned_cols=99  Identities=12%  Similarity=-0.094  Sum_probs=65.1

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      +..+..+..|..++..|++++|..+|+-....+|.   +.+.+..+|.|+..+++|++|+..|..+..+++++|.+... 
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~-  110 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF-  110 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch-
Confidence            35566666666666666666666666666666665   66666666666666666666666666666666666554333 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                         .|.|++..| +.+.|...|+.++.
T Consensus       111 ---agqC~l~l~-~~~~A~~~f~~a~~  133 (165)
T PRK15331        111 ---TGQCQLLMR-KAAKARQCFELVNE  133 (165)
T ss_pred             ---HHHHHHHhC-CHHHHHHHHHHHHh
Confidence               666666666 66666666666665

>KOG1941|consensus

Probab=99.00  E-value=1.1e-07  Score=83.35  Aligned_cols=275  Identities=13%  Similarity=0.087  Sum_probs=191.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHhhcCCC---chhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHH
Q psy12713         68 AKRAFEHEDYLTAIRHCTEEIESTSS---NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRA  143 (551)
Q Consensus        68 a~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la  143 (551)
                      +......|.|++++.+--..++...+   +....+++..++..+.+..++.+++.+-+..+......+ ..-..+...+|
T Consensus        50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~  129 (518)
T KOG1941|consen   50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG  129 (518)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence            44556777777776655444433211   134678899999999999999999999988887644333 22234566699


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----CCHHHHHHHHH
Q psy12713        144 VVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNP----NFHVARAQRHF  213 (551)
Q Consensus       144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~~  213 (551)
                      ..+..++ .++++++.|+.+++...++      ..++..+|.++....++++|.-+..++.++..    ++...-+....
T Consensus       130 ~Ahlgls-~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~  208 (518)
T KOG1941|consen  130 NAHLGLS-VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS  208 (518)
T ss_pred             HHhhhHH-HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence            9999999 9999999999999875443      35788999999999999999999999987743    22232222222


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHH
Q psy12713        214 VVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASL  281 (551)
Q Consensus       214 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~  281 (551)
                      .+.....+..+|..-.|.++.+++.++.      +-.......+|.+|...|+.+.|..-|+.+...-..      ...+
T Consensus       209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a  288 (518)
T KOG1941|consen  209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA  288 (518)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            2222245555688889999998887653      223466778999999999999999999998765322      1334


Q ss_pred             HHHHHHHHHH----hcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        282 YVHRAMLMLQ----ARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       282 ~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +...+.+...    ..+.-=.|++.-++++++...-      ...+..++.+|..+|.-++-...+.++-+.
T Consensus       289 l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  289 LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            4555555322    1122234777777777664322      356778999999999888877777775443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.99  E-value=1e-08  Score=85.19  Aligned_cols=122  Identities=12%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      .+..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++.. .|++++|+
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~   92 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKAL   92 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHH
Confidence            3555555555554455444  5677899999999999999999999999887653   4588999999777 99999999


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHhcccccCHH
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEV-------QRGRLE-------EAVKCFNKALPLARDEA  348 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~  348 (551)
                      ..+++++...|.....+..+|.++.       ..|+++       +|..+|++++..+|++.
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999998888888888       777766       55666666777777543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=1.1e-08  Score=80.36  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=94.7

Q ss_pred             hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      +.++..+..+..|.-++..|++++|...|+-....+|.++..+..+|.++-. +++|++|+..|..+..+++++|...+.
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence            3344456778889999999999999999999999999999999999999555 999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        320 LGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       320 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .|.|+...|+.+.|+..|+.++. .|.+..
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            99999999999999999999988 455544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.93  E-value=1.2e-06  Score=74.18  Aligned_cols=181  Identities=19%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV---ARAQRH  212 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~  212 (551)
                      ++.-|...++.| ++++|+..|+.+...+|..   ..+...++..+++.+++++|+...++-+.+.|.++.   +++..|
T Consensus        37 LY~~g~~~L~~g-n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          37 LYNEGLTELQKG-NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            344444444444 4444444444444444433   234444444444444444444444444444443322   222333


Q ss_pred             HHHHHh--hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        213 FVVHKM--IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML  290 (551)
Q Consensus       213 ~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  290 (551)
                      .+++..  ....+..-...|+..|+..+...|++.-+-.....+           ..++..+      ..--..+|..|+
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~IaryY~  178 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIARYYL  178 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHHHHH
Confidence            333322  444455666777788888888888764221111100           0000000      111123344444


Q ss_pred             HhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        291 QARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       291 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      + .|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|.+.-.
T Consensus       179 k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         179 K-RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             H-hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            4 555555555555555554433   3445555555555555555554443

>KOG1070|consensus

Probab=98.93  E-value=4.1e-07  Score=93.07  Aligned_cols=226  Identities=15%  Similarity=0.216  Sum_probs=186.0

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC----hhHHHHHHHHHHHhCC
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV----ADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~~~~~  186 (551)
                      ++-.+..+.|++.+..+|+....+    +..-...++.+ +.++|.+..++++.. ++..    ..+|..+-++...-|.
T Consensus      1438 ~~~pesaeDferlvrssPNSSi~W----I~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ 1512 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILW----IRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT 1512 (1710)
T ss_pred             ccCCcCHHHHHHHHhcCCCcchHH----HHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc
Confidence            334456677888888899985544    44777788889 999999999999974 4433    3456666666666677


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy12713        187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE  266 (551)
Q Consensus       187 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  266 (551)
                      -+.-.+.|+++.+.+. ....+..+..+|...      +.+++|.++++.+++...+....|..+|..+++..+-+.|..
T Consensus      1513 eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCD-AYTVHLKLLGIYEKS------EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred             HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence            7888899999988764 344566666555555      999999999999999999889999999999999999999999


Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        267 YFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       267 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      .+.+|++.-|.  +.......+.+-++ .|+.+.+...|+..+...|.....|.-+...-.+.|+.+.+...|++++.+.
T Consensus      1586 lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            99999999888  66677778888777 9999999999999999999999999999999999999999999999999876


Q ss_pred             cCHHHH
Q psy12713        345 RDEAEL  350 (551)
Q Consensus       345 ~~~~~~  350 (551)
                      -.-..+
T Consensus      1665 l~~kkm 1670 (1710)
T KOG1070|consen 1665 LSIKKM 1670 (1710)
T ss_pred             CChhHh
Confidence            444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.93  E-value=4.2e-08  Score=86.39  Aligned_cols=109  Identities=18%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHH-HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhH
Q psy12713         98 ALARLLRATVY-IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADS  173 (551)
Q Consensus        98 ~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~  173 (551)
                      ....+..|..+ +..|++++|+..|+..++..|+++.. ..+++++|.+|+..| ++++|+..|+++++.+|++   +++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a-~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ-PNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHH
Confidence            35667777766 56789999999999999998887532 467788999999999 9999999999999887774   778


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  208 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  208 (551)
                      ++.+|.++..+|++++|...|+++++..|+...+.
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            88889999999999999999999999888876543

>KOG3081|consensus

Probab=98.88  E-value=1.9e-06  Score=72.56  Aligned_cols=238  Identities=14%  Similarity=0.137  Sum_probs=173.4

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+...+..++.++..|.+...+.-....-  .|    ...+...++.....-++.++-+.-..+.+........  ...
T Consensus        39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~----~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn--~i~  110 (299)
T KOG3081|consen   39 TDVELDVYMYRAYLALGQYQIVISEIKEGK--AT----PLQAVRLLAEYLELESNKKSILASLYELVADSTDGSN--LID  110 (299)
T ss_pred             chhHHHHHHHHHHHHccccccccccccccc--CC----hHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchh--HHH
Confidence            356667777888888898877665443322  22    3455666666666666666666655554443322222  123


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      ...-|.++..-| ++++|.......     .+.++...-..++.++.+.+-|...++++.+++.+..  ..+++..+.  
T Consensus       111 ~l~aa~i~~~~~-~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv--  180 (299)
T KOG3081|consen  111 LLLAAIIYMHDG-DFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWV--  180 (299)
T ss_pred             HHHhhHHhhcCC-ChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHH--
Confidence            334567788888 999999887763     3456677777899999999999999999998876543  344554444  


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      .+....+...+|.-+|++.-...|..+...+..+.+++.+|+|++|...++.++..++++++.+.++..+... .|...+
T Consensus       181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~  259 (299)
T KOG3081|consen  181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAE  259 (299)
T ss_pred             HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChH
Confidence            2233446799999999999998999999999999999999999999999999999999999999999888666 777655


Q ss_pred             H-HHHHHHHHhcCcCCHH
Q psy12713        299 A-IKLIEKAISIDKSCMF  315 (551)
Q Consensus       299 A-~~~~~~~~~~~~~~~~  315 (551)
                      + .+.+.+....+|+++.
T Consensus       260 ~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  260 VTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHhcCCcchH
Confidence            4 4566666677787654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.87  E-value=1.9e-05  Score=70.46  Aligned_cols=271  Identities=14%  Similarity=0.117  Sum_probs=166.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      +..|.+....||-..|.+.-.+.-..-.. ...+.++..-+..-.-.|+++.|.+-|+.++. +   |+.....+..+-.
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llss-DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d---PEtRllGLRgLyl  162 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSS-DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-D---PETRLLGLRGLYL  162 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-C---hHHHHHhHHHHHH
Confidence            44566666777777777776665422211 01455666667777778888888888887765 2   3333333444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcC
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL---NPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      --...| ..+.|+.+-+.+-...|.-+.++...-...+..|+++.|++..+.....   .++..+  ...+.++...-..
T Consensus       163 eAqr~G-areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae--R~rAvLLtAkA~s  239 (531)
T COG3898         163 EAQRLG-AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE--RSRAVLLTAKAMS  239 (531)
T ss_pred             HHHhcc-cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--HHHHHHHHHHHHH
Confidence            445667 8888888888888888888877777777777888888888887765543   222111  1111111111000


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH-HH
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE-AI  300 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-A~  300 (551)
                      .-..+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|.- .++..  .++.+ .|+... =+
T Consensus       240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~l--Y~~ar-~gdta~dRl  315 (531)
T COG3898         240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIALL--YVRAR-SGDTALDRL  315 (531)
T ss_pred             HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHHH--HHHhc-CCCcHHHHH
Confidence            011346777777788888888888877888888888888888888888887776653 22211  11122 333221 12


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      +-.++...+.|++.+.....+..-..-|++..|..--+.+....|..
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre  362 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE  362 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence            22233344566666777777777777777777766666666666654

>KOG4234|consensus

Probab=98.86  E-value=8.1e-08  Score=76.78  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      ..+-.-|.-++..|+|++|..-|..++..-|.-+ ..+.-.|.+.|.+.+.++ .++.|+..+.++++++|.+..++..+
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-KWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-hHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3445557778888888888888888888877543 344456677888888888 88999999999999998888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      +.+|.++.++++|+..|.++++.+|....+.-...
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            88888888899999999999888888776655444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.86  E-value=8.3e-08  Score=72.80  Aligned_cols=100  Identities=16%  Similarity=-0.007  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      ..|..|..+-..|+.++|+.+|++++......+....+++.+|.++..+|++++|+..+++++...|+++.. ......+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~f~   81 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRVFL   81 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHH
Confidence            345555555555566666666665555543333344555555555555566666655555555555542211 1122235


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q psy12713        143 AVVHLHAASDFTKAFADLDEAE  164 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~  164 (551)
                      +.++...| +.++|+..+-.++
T Consensus        82 Al~L~~~g-r~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLG-RPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCC-CHHHHHHHHHHHH
Confidence            55555555 5555555555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.85  E-value=8.2e-09  Score=72.18  Aligned_cols=67  Identities=31%  Similarity=0.533  Sum_probs=62.6

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF  525 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  525 (551)
                      +...+++++|+..+++++..+|+++..++.+|.++..+|++++|+..|+++++..|+++.+...++.
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5667999999999999999999999999999999999999999999999999999999988776654

>KOG2053|consensus

Probab=98.85  E-value=2e-05  Score=77.77  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=169.3

Q ss_pred             HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713        109 IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE  188 (551)
Q Consensus       109 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  188 (551)
                      ...+++.+|.....+.++..|+.+...    ...|.++.++| +.++|..+++..-...+++...+..+-.+|..+|+++
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~----vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAK----VLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHH----HHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            456889999999999999999985544    44899999999 9999998888877778888889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccCHH-----
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFD-----  262 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~-----  262 (551)
                      +|..+|++++..+|+ ......+-.++.+.      +.|.+-.+.--+..+..|+++..+.....+.++ ....+     
T Consensus        95 ~~~~~Ye~~~~~~P~-eell~~lFmayvR~------~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~  167 (932)
T KOG2053|consen   95 EAVHLYERANQKYPS-EELLYHLFMAYVRE------KSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDP  167 (932)
T ss_pred             HHHHHHHHHHhhCCc-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccc
Confidence            999999999999999 77777777666666      777777776667777888887654444444433 22222     


Q ss_pred             ----HHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHh-cCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713        263 ----GAEEYFNRSIRVD-PEN--ASLYVHRAMLMLQARGNVDEAIKLIEK-AIS-IDKSCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       263 ----~A~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                          -|...+++.++.. +-.  .++...+- + +..+|++++|.+++.. ..+ ..+.+...-...+..+...++|.+-
T Consensus       168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~-i-L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l  245 (932)
T KOG2053|consen  168 ILLALAEKMVQKLLEKKGKIESEAEIILYLL-I-LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL  245 (932)
T ss_pred             hhHHHHHHHHHHHhccCCccchHHHHHHHHH-H-HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence                3555666666665 322  22222222 2 3338999999999843 333 3444455555677888899999999


Q ss_pred             HHHHHHhcccccCH
Q psy12713        334 VKCFNKALPLARDE  347 (551)
Q Consensus       334 ~~~~~~a~~~~~~~  347 (551)
                      .+.-.+++...+++
T Consensus       246 ~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  246 FELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHhCCcc
Confidence            99999999999887

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.81  E-value=1.3e-07  Score=87.77  Aligned_cols=117  Identities=18%  Similarity=0.315  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713        224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI  303 (551)
Q Consensus       224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  303 (551)
                      .++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..++. .++++.|+.+.
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA  257 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA  257 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            47899999999999888865   566789999999999999999999999999999999999998777 99999999999


Q ss_pred             HHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        304 EKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       304 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      ++++...|++...|..|+.+|...|++++|+..++.+--..
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            99999999999999999999999999999998888655443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=80.02  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHH
Q psy12713        101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQR  177 (551)
Q Consensus       101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l  177 (551)
                      .+..|.-++..|+|..|...|..-++..|+++.. .++++++|.+++.+| +++.|...|..+.+..|++   ++.++.+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~-~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT-PNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc-chhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            6778888888888888888888888888876544 678888888888888 8888888888888877665   6778888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      |.+...+|+.++|...|+++++..|+...+..
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            88888888888888888888888888766543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.78  E-value=2.1e-07  Score=70.60  Aligned_cols=99  Identities=20%  Similarity=0.048  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHH
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN---VADSYY  175 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~  175 (551)
                      .+++.+|.++-..|+.++|+..|++++......+ ....+++.+|.++...| ++++|+..+++.+...|+   +.....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            4788899999999999999999999999765543 34568889999999999 999999999999998888   677888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      .++.++...|+.++|+..+-.++.
T Consensus        80 f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   80 FLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            889999999999999999887774

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.78  E-value=3.7e-07  Score=70.26  Aligned_cols=123  Identities=19%  Similarity=0.223  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DS  173 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~  173 (551)
                      .+..++.-|...+..|+|++|++.|+.+....|..+.. ..+.+.++.+|+..+ ++++|+..+++.++++|.++   .+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHH
Confidence            46778889999999999999999999999988876544 467788999999999 99999999999999998885   46


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE  246 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  246 (551)
                      ++..|.+++.+..     ..+......                    -...+....|...|++++...|++..
T Consensus        87 ~Y~~gL~~~~~~~-----~~~~~~~~~--------------------drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   87 YYMRGLSYYEQDE-----GSLQSFFRS--------------------DRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHHhh-----hHHhhhccc--------------------ccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            7888888777654     111111111                    11225556677777777777776643

>KOG2471|consensus

Probab=98.77  E-value=4.4e-06  Score=76.45  Aligned_cols=298  Identities=17%  Similarity=0.115  Sum_probs=189.0

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH-HHHhCCchHHHHHHHHHhhc-----CCC
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATV-YIFTSQSTKAIEDLTQLVED-----TSV  130 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~-----~~~  130 (551)
                      .++.-..+...+...+..++|+....+++..-.++..   ...+++..+.+ |++.|.... ....+....+     .|.
T Consensus        13 ~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~---~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~   88 (696)
T KOG2471|consen   13 GEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGES---SGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPG   88 (696)
T ss_pred             ccchhHHHHHHHHhccCCcchHHHHHHHHHHHhcccc---ccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhcccc
Confidence            3445566778888889999999999999988887776   44445666655 455554432 2222222221     111


Q ss_pred             C------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        131 D------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       131 ~------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      +      ..-....+++.|.+++... .+..|++........-...     ...-+..-..+.....-++|+.++.-.-+
T Consensus        89 ~~~~gld~~~~t~~~yn~aVi~yh~~-~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~  167 (696)
T KOG2471|consen   89 DVSSGLSLKQGTVMDYNFAVIFYHHE-ENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE  167 (696)
T ss_pred             chhcchhhhcchHHhhhhheeeeeHh-hcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      0111235677888888888 8888888777665442211     11223334455555666666665433221


Q ss_pred             c------CC--CCHHHH-------------------HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        200 L------NP--NFHVAR-------------------AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       200 ~------~~--~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                      +      .+  ++...-                   .......+....+....+...+..-.+.+.....+.+.+....+
T Consensus       168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKs  247 (696)
T KOG2471|consen  168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKS  247 (696)
T ss_pred             HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHH
Confidence            1      11  000000                   00111111112222335666666666666667778888899999


Q ss_pred             HHHHhccCHHHHHHHHHHH-HhcCCC------C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------C----
Q psy12713        253 QVLVDQEDFDGAEEYFNRS-IRVDPE------N--ASLYVHRAMLMLQARGNVDEAIKLIEKAISI---------D----  310 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~-~~~~~~------~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---------~----  310 (551)
                      ..++..|++.+|.+.+... +...|.      .  ...|.++|.++++ .|.|..+..+|.++++.         .    
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            9999999999999887654 222232      1  2356789999888 99999999999999851         1    


Q ss_pred             -----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHH
Q psy12713        311 -----KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA  360 (551)
Q Consensus       311 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  360 (551)
                           ....+..++.|..|...|+.-.|.++|.+++.....++.+|.-++-+...
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                 12367889999999999999999999999999998888888777766433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.76  E-value=3.2e-07  Score=85.15  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=93.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +-.++...++++.|+..+++..+.+|+   ....++.++...      ++..+|++.+.+++...|.+...+...+..+.
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~------~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM------NEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455567788888888887777664   334455555444      67778888888888888888888888888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      ..++++.|+...++++...|++...|..++.+|.. .|+++.|+-.++.+-
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence            88888889998888888888888888888888777 888888888777543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.73  E-value=7e-08  Score=66.32  Aligned_cols=62  Identities=27%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      .|++++|+..|++++..+|++..++..+|.++...|++++|...+++++...|+++.++..+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            68888888888888888888888888888888888888888888888888888876655443

...

>KOG4555|consensus

Probab=98.72  E-value=7.1e-07  Score=66.05  Aligned_cols=105  Identities=19%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ...+-.+|..+...|+.+.|++.|.+++...|.   .+.++.+.+.++.-+|+.++|+..+++++++..........++.
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v  119 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV  119 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            344556788899999999999999999999999   99999999999999999999999999999998777777778999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPN  169 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~  169 (551)
                      ..|.+|..+| +.+.|...|+.+-++...
T Consensus       120 QRg~lyRl~g-~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  120 QRGLLYRLLG-NDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHhC-chHHHHHhHHHHHHhCCH
Confidence            9999999999 999999999988776543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.71  E-value=0.00023  Score=65.16  Aligned_cols=134  Identities=13%  Similarity=0.064  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      -.+..+|..+..++++.+|..+|.++.+...++  ...-+++.++....+-+++.+.-...+...-+..|..+..    .
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l----~   82 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYL----P   82 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHH----H
Confidence            345667889999999999999999988776553  1122444444444455666666666666555666655433    2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------hhH--HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV-------------ADS--YYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~--~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      ...|...++.+ ++++|++.+......-.+.             ++.  -...+.++...|.+.++...+++.+..
T Consensus        83 LF~~L~~Y~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   83 LFKALVAYKQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34778888888 8999888887665542111             111  134577888889999988888877653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617|consensus

Probab=98.70  E-value=3.3e-05  Score=75.43  Aligned_cols=170  Identities=17%  Similarity=0.067  Sum_probs=112.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV  145 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  145 (551)
                      .-|......|-.++|..+|++.-+           +-.+-..|...|.+++|.+..+.--.+      -.-..|++.+..
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRi------HLr~Tyy~yA~~  867 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRI------HLRNTYYNYAKY  867 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccce------ehhhhHHHHHHH
Confidence            345556667777777777765432           223345566677777777665432111      123467788888


Q ss_pred             HHHhcCCHHHHHHHHHHH----------HhcCCC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        146 HLHAASDFTKAFADLDEA----------EKVDPN----------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~----------~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      +...+ +.+.|+++|+++          +..+|.          ++..|...|......|+.+.|+.+|..+-..     
T Consensus       868 Lear~-Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~-----  941 (1416)
T KOG3617|consen  868 LEARR-DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY-----  941 (1416)
T ss_pred             HHhhc-cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----
Confidence            88888 999999999874          233443          3456667788888888888888888776432     


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                         +.+.      .+..-+|+.++|-...++     ..+..+.+.+|+.|...|++.+|+..|.++-
T Consensus       942 ---fs~V------rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  942 ---FSMV------RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---hhhe------eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               1111      445555777777665543     4566778888888888888888888877754

>KOG4234|consensus

Probab=98.69  E-value=5.3e-07  Score=72.23  Aligned_cols=106  Identities=23%  Similarity=0.252  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +.+-..|..+|..|+|++|..-|..+|...|..  ......+.+.|.+.++++.++.|+..+.+++.++|..    ..++
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty----~kAl  171 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY----EKAL  171 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----HHHH
Confidence            334445555666666666666666666666553  2233445555666666666666666666666666654    3344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD  172 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  172 (551)
                      ...|..|..+. ++++|+..|.+++..+|....
T Consensus       172 ~RRAeayek~e-k~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  172 ERRAEAYEKME-KYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHH
Confidence            44566666666 666666666666666665443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.7e-07  Score=65.46  Aligned_cols=57  Identities=26%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .+++++|+.++++++..+|+++..+..+|.++...|++.+|+..++++++..|++..
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            444444444444444444444444444444444444444444444444444444333

>KOG2300|consensus

Probab=98.66  E-value=0.00034  Score=64.48  Aligned_cols=133  Identities=20%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhhh--cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhcC---CCCchhH
Q psy12713         62 LDLLSKAKRAFEHE--DYLTAIRHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVEDT---SVDPKIK  135 (551)
Q Consensus        62 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~---~~~~~~~  135 (551)
                      .+++..|..+...|  +...++++++..+...|.....+.....+|.+++ ...+++.|...++++..+.   |...+..
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK   87 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK   87 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence            44555555555555  6666666666666666654444455556665543 4566666666666665542   3333444


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----DSYYQRGQIYCLFGQYEEALRNL  194 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~  194 (551)
                      ..+...++.+|......+..|...+++++++....+    ...+.++.+..-..++..|++.+
T Consensus        88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen   88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            555666666666554345566666666666654443    23455666666666666666653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.65  E-value=0.00012  Score=65.61  Aligned_cols=204  Identities=15%  Similarity=0.112  Sum_probs=148.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      .|.+-...| +-..|.+.-.++-++-..+  +-++..-++.-.-.|+++.|.+-|+-.+. +|.. .. ..+-.+|   .
T Consensus        90 tGliAagAG-da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-Rl-lGLRgLy---l  162 (531)
T COG3898          90 TGLIAAGAG-DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RL-LGLRGLY---L  162 (531)
T ss_pred             hhhhhhccC-chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HH-HhHHHHH---H
Confidence            455556667 8888888877776543333  45666667888888999999999988774 3321 11 1111111   2


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCCH-----HHHHHHHHHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPENA-----SLYVHRAMLMLQ  291 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~-----~~~~~l~~~~~~  291 (551)
                      --...|..+.|+.+-+++....|.-+.++...-...+..|+|+.|++..+.....   .++..     ..+...+...+ 
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-  241 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-  241 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-
Confidence            2234589999999999999999999988888888888999999999998876543   23321     12223333322 


Q ss_pred             hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                       ..+...|...-.++.++.|+...+-..-+..+++.|+..++-..++.+.+..|. ++++..|.
T Consensus       242 -dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~  303 (531)
T COG3898         242 -DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYV  303 (531)
T ss_pred             -cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHH
Confidence             467889999999999999999889899999999999999999999999998886 44555443

>KOG2796|consensus

Probab=98.54  E-value=0.00038  Score=58.94  Aligned_cols=231  Identities=13%  Similarity=0.100  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc---------------hhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP---------------KIKVNAHIKRAVVHLHAASDFTKAFADLD  161 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~~~~~A~~~~~  161 (551)
                      ....|...-.++.++..+++|...+...-+.+..+-               -+....-...|.+....| +..+.+.-+.
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lg-npqesLdRl~  146 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLG-NPQESLDRLH  146 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcC-CcHHHHHHHH
Confidence            566777777778888888888877766555432110               000111122344555566 5555555444


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC
Q psy12713        162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH  241 (551)
Q Consensus       162 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  241 (551)
                      .....       -..+..........+..++.+++-+.      .+.+.+..++.      ..|.|.-.+..+.+.++.+
T Consensus       147 ~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~ll------G~kEy~iS~d~~~~vi~~~  207 (366)
T KOG2796|consen  147 KLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLL------GMKEYVLSVDAYHSVIKYY  207 (366)
T ss_pred             HHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHh------cchhhhhhHHHHHHHHHhC
Confidence            33321       11111222222223444444444331      23333443444      3499999999999999988


Q ss_pred             -CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713        242 -SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM  314 (551)
Q Consensus       242 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  314 (551)
                       |..+.....+|.+.++.|+.+.|..+|+.+-+..      .....+..+.+.+++- .+++..|...+.+++..+|.++
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccchHHHHHHHhhccccCCCch
Confidence             6678888899999999999999999999654322      2234456677777777 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      .+..+.+.|..-.|+..+|++.++.++...|...
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999999754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.54  E-value=3e-05  Score=61.71  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhccCHH
Q psy12713        184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD-THSNVVEACTLFAQVLVDQEDFD  262 (551)
Q Consensus       184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~  262 (551)
                      .=+.+....-..+.+...|.. .-.+.++......      |++.+|...|++++. ...+++..+..+++..+..+++.
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~el------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          69 KLDPERHLREATEELAIAPTV-QNRYRLANALAEL------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHh------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence            334444444445555555543 3345566666655      788888887777765 45667778888888888888888


Q ss_pred             HHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        263 GAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       263 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      .|...+++..+.+|..  ++....+|.++.. .|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-+...
T Consensus       142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            8888888888877643  5667777887555 88888888888888888886 777888888888888887776665544


Q ss_pred             c
Q psy12713        341 L  341 (551)
Q Consensus       341 ~  341 (551)
                      .
T Consensus       220 ~  220 (251)
T COG4700         220 V  220 (251)
T ss_pred             H
Confidence            3

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.52  E-value=5.7e-05  Score=60.21  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=107.3

Q ss_pred             HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHh
Q psy12713         71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-TSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      ..+.=|.+.+..-..+.+...|    ...-.+.+|......|++.+|...|++++.- ..+++    ..+..+++..+..
T Consensus        66 ~~q~ldP~R~~Rea~~~~~~Ap----Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~  137 (251)
T COG4700          66 LQQKLDPERHLREATEELAIAP----TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAI  137 (251)
T ss_pred             HHHhcChhHHHHHHHHHHhhch----hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhh
Confidence            3444466666666667777777    4666788888888999999999999888873 33443    3455688888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        150 ASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      + ++..|...+++..+.+|..  ++....+|.++...|.+.+|...|+.++...|+. .+....+..+...      |+.
T Consensus       138 ~-~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~q------gr~  209 (251)
T COG4700         138 Q-EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQ------GRL  209 (251)
T ss_pred             c-cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHh------cch
Confidence            8 8999999999888887754  6778888888888888888888888888887753 3333344333333      655


Q ss_pred             HHHHHHHHHH
Q psy12713        228 EQSLKEFRNF  237 (551)
Q Consensus       228 ~~A~~~~~~~  237 (551)
                      .++...+...
T Consensus       210 ~ea~aq~~~v  219 (251)
T COG4700         210 REANAQYVAV  219 (251)
T ss_pred             hHHHHHHHHH
Confidence            5555444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.51  E-value=1.7e-07  Score=57.27  Aligned_cols=43  Identities=26%  Similarity=0.298  Sum_probs=40.5

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF  525 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  525 (551)
                      |.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4688999999999999999999999999999999999999875

>KOG1586|consensus

Probab=98.49  E-value=2.2e-05  Score=64.88  Aligned_cols=186  Identities=18%  Similarity=0.232  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHhcCCHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----P-ENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      +.+++|.++|.++-              ..|...++|..|=..|.++-+..     . +-...+...+.+ ++ .+++++
T Consensus        28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-yk-k~~~~e   91 (288)
T KOG1586|consen   28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YK-KVDPEE   91 (288)
T ss_pred             cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hh-ccChHH
Confidence            67888888877653              34444455555555555544321     1 123455556666 66 789999


Q ss_pred             HHHHHHHHHhcCcCCHH------HHHHHHHHHHHh-CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713        299 AIKLIEKAISIDKSCMF------AYETLGTIEVQR-GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN  371 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (551)
                      |+.++++++++..+-..      .+..+|.+|... .++++|+.+|+++-+-...+......                  
T Consensus        92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA------------------  153 (288)
T KOG1586|consen   92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA------------------  153 (288)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH------------------
Confidence            99999999988655433      344788888765 89999999999987655443321100                  


Q ss_pred             cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713        372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN  451 (551)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (551)
                                         -+.+-                                                        
T Consensus       154 -------------------NKC~l--------------------------------------------------------  158 (288)
T KOG1586|consen  154 -------------------NKCLL--------------------------------------------------------  158 (288)
T ss_pred             -------------------HHHHH--------------------------------------------------------
Confidence                               00000                                                        


Q ss_pred             chhhhchhhhhcChhHHHHhhHHhhccCCCc-------hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHH
Q psy12713        452 LENESGQKHAASDFTKAFADLDEAEKVDPNV-------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  521 (551)
Q Consensus       452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  521 (551)
                        ..+...-+.++|.+|+..|+++....-++       -+.++.-|.|++...+.-.+...+++-.+++|.+.+.+-
T Consensus       159 --KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  159 --KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence              00000123478999999999988765443       345677889999999999999999999999999876543

>KOG1585|consensus

Probab=98.48  E-value=8.5e-05  Score=62.01  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHh
Q psy12713        225 ERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQA  292 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  292 (551)
                      -++++|++.|++++.+...+      .+.+...++++.+..++.+|-..+.+-...      .++....+.....+++. 
T Consensus       124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~-  202 (308)
T KOG1585|consen  124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY-  202 (308)
T ss_pred             CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh-
Confidence            56777888887777654332      345667788888888998888777664332      23333445555555565 


Q ss_pred             cCCHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        293 RGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       293 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      ..+|..|..+++...++.    |++..+..+|-..| ..|+.++..+.+.
T Consensus       203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            779999999998876653    44555666665554 5677777666654

>KOG2796|consensus

Probab=98.48  E-value=0.0005  Score=58.24  Aligned_cols=230  Identities=13%  Similarity=0.104  Sum_probs=151.9

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---------------hhH-HHHHHHHHHHHHHhCCchHHHHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---------------HTK-ALARLLRATVYIFTSQSTKAIEDLT  122 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~-~~~~~~la~~~~~~g~~~~A~~~~~  122 (551)
                      +....|-.+-..+.+...+++|..-+...-..+..+               ... ......-|.+....|+..+.+.-+.
T Consensus        67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~  146 (366)
T KOG2796|consen   67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH  146 (366)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            355666677777788888888887766554443221               001 1223344666677788777766655


Q ss_pred             HHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Q psy12713        123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN-  201 (551)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-  201 (551)
                      .....-           ..+........ ..+..+..+++-+      ..+.+.+..++...|+|.-....+.++++.+ 
T Consensus       147 ~L~~~V-----------~~ii~~~e~~~-~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~  208 (366)
T KOG2796|consen  147 KLKTVV-----------SKILANLEQGL-AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP  208 (366)
T ss_pred             HHHHHH-----------HHHHHHHHhcc-chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence            543321           00222222222 3345555555543      2355666777777777777777777777766 


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                      |..+.....++.+..+.      |+.+.|..+|++.-+..      ....-+..+.+.++.-.+++..|...+.+++..+
T Consensus       209 e~~p~L~s~Lgr~~MQ~------GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D  282 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQI------GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD  282 (366)
T ss_pred             cccHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC
Confidence            44555566666555555      77777777777544322      1223456677788888899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        276 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      |.++.+..+.+.|.+- .|+...|++.++.++++.|..
T Consensus       283 ~~~~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  283 PRNAVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             CCchhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999777 899999999999999998874

>KOG3617|consensus

Probab=98.48  E-value=0.00012  Score=71.79  Aligned_cols=191  Identities=16%  Similarity=0.184  Sum_probs=123.5

Q ss_pred             HHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy12713        104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL  183 (551)
Q Consensus       104 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  183 (551)
                      .|.....+|-.++|...|.+.-..+            .+-..|...| .+++|.+..+.--.++  -...|++.+..+..
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR~D------------LlNKlyQs~g-~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKRYD------------LLNKLYQSQG-MWSEAFEIAETKDRIH--LRNTYYNYAKYLEA  870 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHH------------HHHHHHHhcc-cHHHHHHHHhhcccee--hhhhHHHHHHHHHh
Confidence            3455566777777777777654421            1444566666 7777776655322221  23467777777777


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH
Q psy12713        184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG  263 (551)
Q Consensus       184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  263 (551)
                      .++.+.|+++|+++-..  .. ....             -+.++..+++.|-+    ...++..|...|..+...|+.+.
T Consensus       871 r~Di~~AleyyEK~~~h--af-ev~r-------------mL~e~p~~~e~Yv~----~~~d~~L~~WWgqYlES~Gemda  930 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVH--AF-EVFR-------------MLKEYPKQIEQYVR----RKRDESLYSWWGQYLESVGEMDA  930 (1416)
T ss_pred             hccHHHHHHHHHhcCCh--HH-HHHH-------------HHHhChHHHHHHHH----hccchHHHHHHHHHHhcccchHH
Confidence            77888888887765311  00 0000             01233333333321    12345677778888999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        264 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       264 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      |+.+|..+-.        |+.+..+..- +|+.++|-.+.++     ..+..+.+.+|..|...|+..+|+..|.+|-..
T Consensus       931 Al~~Y~~A~D--------~fs~VrI~C~-qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  931 ALSFYSSAKD--------YFSMVRIKCI-QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHHHhhh--------hhhheeeEee-ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            9999987643        4555555444 7999998876664     456788999999999999999999999887553

>KOG2471|consensus

Probab=98.46  E-value=0.00036  Score=64.42  Aligned_cols=228  Identities=14%  Similarity=0.114  Sum_probs=157.0

Q ss_pred             CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHH---hhc---
Q psy12713         56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQL---VED---  127 (551)
Q Consensus        56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~---  127 (551)
                      +.....-.++..|..++....+..|++.....+......  ......-+..-..+....+.++|+.++.-.   +..   
T Consensus        95 d~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~  174 (696)
T KOG2471|consen   95 SLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM  174 (696)
T ss_pred             hhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            334456778889999999999999998877766543321  112222333334455556666776654332   221   


Q ss_pred             CCC------C------c-----------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713        128 TSV------D------P-----------KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  184 (551)
Q Consensus       128 ~~~------~------~-----------~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  184 (551)
                      .+.      +      +           .............+.+.. +...+....+.+.....+.+.+....++.++..
T Consensus       175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~-~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~  253 (696)
T KOG2471|consen  175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTR-NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH  253 (696)
T ss_pred             cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHH-HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh
Confidence            110      0      0           011123333455667777 788888888888888888899999999999999


Q ss_pred             CCHHHHHHHHHHHH-hcCCC--------CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---------CC----
Q psy12713        185 GQYEEALRNLDKTI-ALNPN--------FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT---------HS----  242 (551)
Q Consensus       185 ~~~~~A~~~~~~~l-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~----  242 (551)
                      |++.+|.+.+...- ...|.        ....|.++|.+++++      |.+.-+..+|.++++.         .|    
T Consensus       254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL------GCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh------hhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            99999998876542 22232        123356777666665      9999999999999851         11    


Q ss_pred             -----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        243 -----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML  290 (551)
Q Consensus       243 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  290 (551)
                           ..-++.++.|..+...|++-.|.++|.++......+|..|..++.+++
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                 124688999999999999999999999999999999999999998864

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.43  E-value=1.4e-06  Score=61.60  Aligned_cols=69  Identities=16%  Similarity=0.065  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVED---TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                      .+.++..+|.+|..+|++++|+.+|++++++   .+++....+.++.++|.++...| ++++|+.++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence            5667777777777777777777777777764   22222223556777777777777 777777777777654

...

>KOG1914|consensus

Probab=98.43  E-value=0.0017  Score=60.99  Aligned_cols=59  Identities=8%  Similarity=0.019  Sum_probs=53.0

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc--CCchH
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFH  517 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~  517 (551)
                      |+-.++..-|...|+-.++..++++..-......+..+++-..|...|++++..  .|+-.
T Consensus       411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks  471 (656)
T KOG1914|consen  411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS  471 (656)
T ss_pred             HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence            566799999999999999999999998888889999999999999999999987  55543

>KOG4555|consensus

Probab=98.42  E-value=3.1e-05  Score=57.62  Aligned_cols=99  Identities=29%  Similarity=0.366  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHH
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTI  323 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~  323 (551)
                      +-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+.. ++-+|+.++|++.+++++++..+.    -.++...|.+
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa-~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQA-LRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHH-HHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            44567777888999999999999999999999999999988 444899999999999999876443    4567888999


Q ss_pred             HHHhCCHHHHHHHHHHhcccccCH
Q psy12713        324 EVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       324 ~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      |...|+.+.|...|+.+-++....
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999888876544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.40  E-value=1.5e-06  Score=80.23  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713        240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISID  310 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  310 (551)
                      .+|+++..++++|.+|...|++++|+..|+++++++|++..+   |+++|.+|.. +|++++|+.+++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            468888999999999999999999999999999999998854   9999999776 999999999999999873

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.36  E-value=9.4e-06  Score=64.68  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcC---CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713        188 EEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVP---GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE  259 (551)
Q Consensus       188 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  259 (551)
                      +.|.+.++.....+|.+.+.+.+-|.++..+ ...   .....+++|+.-|++++.++|+..++++.+|.++...+
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444333 110   11245677777788888888888888888888776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.33  E-value=7.9e-07  Score=50.97  Aligned_cols=34  Identities=38%  Similarity=0.804  Sum_probs=31.2

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.33  E-value=3.7e-07  Score=51.71  Aligned_cols=33  Identities=33%  Similarity=0.567  Sum_probs=26.2

Q ss_pred             hhHHhhccCCCchHHHhhhhhHHHHhcCHHHHH
Q psy12713        471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  503 (551)
Q Consensus       471 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  503 (551)
                      +|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            367788888888888888888888888888775

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.33  E-value=3.3e-06  Score=77.95  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---CTLFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                      .+|++...+.++|.+++..      |++++|+..|++++.++|++..+   |+++|.+|..+|++++|+.+++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~l------GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSK------GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4789999999999888888      99999999999999999999854   9999999999999999999999999973

>KOG1585|consensus

Probab=98.31  E-value=0.00095  Score=55.99  Aligned_cols=200  Identities=13%  Similarity=0.097  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI--KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-----PN  169 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-----~~  169 (551)
                      .+..+..-+.+|....+|++|...+.++.+-..++..+  ...++-..+....... .+.++..+++++..+.     |+
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~-klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS-KLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhCCcc
Confidence            34455556667777788888888888887654433222  2335555666667777 8888888888887653     33


Q ss_pred             ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---
Q psy12713        170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA------RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT---  240 (551)
Q Consensus       170 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---  240 (551)
                      ....-...+--....-++++|+..|++++.+-..+...      +...+      .++.....+++|-..+.+-...   
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s------r~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS------RVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh------hHhhhhHHhhHHHHHHHHhhhHHHH
Confidence            33333344444556678899999999988764433222      22233      4455558888888777665432   


Q ss_pred             ---CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        241 ---HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       241 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                         .++....+.....++.-..+|..|..+++...++    .|++..+..++-.. +. .|+.++...++..
T Consensus       183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd-~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YD-EGDIEEIKKVLSS  252 (308)
T ss_pred             HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hc-cCCHHHHHHHHcC
Confidence               2344455666666777788999999999987665    35566677777766 66 7999888877753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.31  E-value=7.3e-07  Score=63.13  Aligned_cols=64  Identities=31%  Similarity=0.433  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISID-------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      ..++.++|.++.. .|++++|+.+|++++++.       |....++.++|.++...|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455556666444 666666666666665431       112445666777777777777777777766654

...

>KOG1586|consensus

Probab=98.29  E-value=0.00029  Score=58.56  Aligned_cols=125  Identities=11%  Similarity=0.099  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQ  291 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~  291 (551)
                      +++++|+.++++++++..+..      ..+..+|.+|... .++++|+.+|+++-+.....      ...+...+...-.
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            355555555555555443322      2344667777654 78888888888877654322      1123333433233


Q ss_pred             hcCCHHHHHHHHHHHHhcCcCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        292 ARGNVDEAIKLIEKAISIDKSCM-------FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                       .++|.+|+..|+++....-+++       ..++.-|.|++-..+.-.+...+++..+++|...+.
T Consensus       167 -leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  167 -LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             -HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence             7888888888888876654443       234456777777788888888888888888876553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.27  E-value=0.00028  Score=65.69  Aligned_cols=57  Identities=25%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  127 (551)
                      .......+..+...-++.-.++++.+|+   .+.++..++.-.  .....+|..+++++++.
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pd---CAdAYILLAEEe--A~Ti~Eae~l~rqAvkA  229 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPD---CADAYILLAEEE--ASTIVEAEELLRQAVKA  229 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhh---hhHHHhhccccc--ccCHHHHHHHHHHHHHH
Confidence            3445567888999999999999999998   999999888632  23467888888888774

The molecular function of this protein is uncertain.

>KOG2610|consensus

Probab=98.26  E-value=0.00012  Score=64.02  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=106.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-CCCc---HHHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-HSNV---VEACTLFAQ  253 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~  253 (551)
                      +.+....|+..+|-..+++.++-.|.+..++...-.+++..      |+...-...+++++.. +++.   ..+.-.++.
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~------G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYN------GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhc------cchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            44455667777777777787777777776666555555555      7777777777777765 4444   344456667


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHhCC
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTIEVQRGR  329 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~  329 (551)
                      .+...|-+++|.+.-+++++++|.+..+...++.+ ++..|+..++.++..+.-..-...    ..-|...+.++..-+.
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV-lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae  262 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHV-LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE  262 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH-HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence            77778888888888888888888887777777777 444778888887776543221111    2235566777777788


Q ss_pred             HHHHHHHHHHhc
Q psy12713        330 LEEAVKCFNKAL  341 (551)
Q Consensus       330 ~~~A~~~~~~a~  341 (551)
                      ++.|++.|++-+
T Consensus       263 ye~aleIyD~ei  274 (491)
T KOG2610|consen  263 YEKALEIYDREI  274 (491)
T ss_pred             hhHHHHHHHHHH
Confidence            888888887643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.24  E-value=3.2e-05  Score=61.74  Aligned_cols=93  Identities=24%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcC
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVP  221 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~  221 (551)
                      ++.|.+.++.....+|.+++.++.-|.++..+.+          +++|+.-|++++.++|+...+++.+|.++... .+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            4555555666566666666666555555544422          34566666666666777666666666665544 111


Q ss_pred             CC----hhHHHHHHHHHHHHHHhCCCcH
Q psy12713        222 GD----RERVEQSLKEFRNFVDTHSNVV  245 (551)
Q Consensus       222 ~~----~~~~~~A~~~~~~~~~~~~~~~  245 (551)
                      .+    ...+++|..+|+++...+|++.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            11    1335555555666665555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.22  E-value=2e-06  Score=49.33  Aligned_cols=34  Identities=41%  Similarity=0.811  Sum_probs=31.2

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                      +.+++.+|.++..+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4642|consensus

Probab=98.21  E-value=2.1e-05  Score=65.31  Aligned_cols=99  Identities=18%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....+-.+|..++....|..|+..|.++|..+|.   .+..+.+.+.|+++..+++.+.....+++++.|+.    +.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~----vk~h   81 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL----VKAH   81 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH----HHHH
Confidence            4556677888888888999999999999999997   77888889999999999999999999999998876    5677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                      +.+|....... .+++|+..+.++..+
T Consensus        82 ~flg~~~l~s~-~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   82 YFLGQWLLQSK-GYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHhhc-cccHHHHHHHHHHHH
Confidence            77999999988 899999999988654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.19  E-value=8e-05  Score=67.30  Aligned_cols=125  Identities=19%  Similarity=0.253  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI  303 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  303 (551)
                      +..+.|..+|.++.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+.. .|+.+.|..+|
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf   93 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            566777777777765444556666666766555 4455557777777777777777776666665444 67777777777


Q ss_pred             HHHHhcCcCCH---HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        304 EKAISIDKSCM---FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       304 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++++..-|...   .+|......-...|+.+...+..+++.+..|++..+
T Consensus        94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            77776554432   466667777777777777777777777776665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.16  E-value=0.0048  Score=60.23  Aligned_cols=181  Identities=17%  Similarity=0.099  Sum_probs=123.3

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH-------HHHHHH-HHH---hcCCHHHHHH
Q psy12713        233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY-------VHRAML-MLQ---ARGNVDEAIK  301 (551)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~-~~~---~~~~~~~A~~  301 (551)
                      .|.-++..-|..   ...+..+.--.|+-+.++..+.++.+. ++-....       +..+.. .+.   ...+.+.|.+
T Consensus       179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~  254 (468)
T PF10300_consen  179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE  254 (468)
T ss_pred             HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence            344445554433   233334444568999999999998773 2221111       111111 111   1456788999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchh
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQ  381 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (551)
                      .+....+..|+.....+..|.++...|+.++|++.|++++.....-+.+...                            
T Consensus       255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l----------------------------  306 (468)
T PF10300_consen  255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL----------------------------  306 (468)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH----------------------------
Confidence            9999999999999999999999999999999999999998543332221110                            


Q ss_pred             hhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhh
Q psy12713        382 NITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHA  461 (551)
Q Consensus       382 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (551)
                                                                                           ..+..+..+..
T Consensus       307 ---------------------------------------------------------------------~~~El~w~~~~  317 (468)
T PF10300_consen  307 ---------------------------------------------------------------------CYFELAWCHMF  317 (468)
T ss_pred             ---------------------------------------------------------------------HHHHHHHHHHH
Confidence                                                                                 01122223445


Q ss_pred             hcChhHHHHhhHHhhccCCC-chHHHhhhhhHHHHhcCH-------HHHHHHHHHHhhcCC
Q psy12713        462 ASDFTKAFADLDEAEKVDPN-VADSYYQRGQIYCLFGQY-------EEALRNLDKTIALNP  514 (551)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p  514 (551)
                      ..+|++|...+.+..+.+.- .+-..|..|.|+...|+.       ++|.+.|.++-.+..
T Consensus       318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            58999999999999987654 455667889999999999       889999888876543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4642|consensus

Probab=98.16  E-value=5e-06  Score=68.83  Aligned_cols=90  Identities=23%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                      |..++...+|..|+..|.+++.++|..+..+.+.+.++++ .++++.+.....+++++.|+.....+.+|.+......++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            3334444455555555555555555555555555555555 555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcc
Q psy12713        332 EAVKCFNKALP  342 (551)
Q Consensus       332 ~A~~~~~~a~~  342 (551)
                      +|+..++++..
T Consensus        96 eaI~~Lqra~s  106 (284)
T KOG4642|consen   96 EAIKVLQRAYS  106 (284)
T ss_pred             HHHHHHHHHHH
Confidence            55555555533

>KOG4507|consensus

Probab=98.15  E-value=0.00017  Score=67.90  Aligned_cols=122  Identities=22%  Similarity=0.245  Sum_probs=98.3

Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713         82 RHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL  160 (551)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~  160 (551)
                      .+....++..|.    ...+..++..|+ .+|+..+|..++..++-..|....  --+++.+|.++.+.| ...+|--++
T Consensus       200 ~~~~~glq~~~~----sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k--di~lLSlaTiL~RaG-~sadA~iIL  272 (886)
T KOG4507|consen  200 HLIHEGLQKNTS----SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK--DIALLSLATVLHRAG-FSADAAVIL  272 (886)
T ss_pred             HHHHHhhhcCch----hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc--cchhhhHHHHHHHcc-cccchhhee
Confidence            345566777774    445556666665 579999999999999988766433  235677999999999 999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713        161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  210 (551)
Q Consensus       161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  210 (551)
                      ..++...|....-++.++.++...+++......|..+.+..|......-.
T Consensus       273 hAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q  322 (886)
T KOG4507|consen  273 HAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQ  322 (886)
T ss_pred             ehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence            88888888777779999999999999999999999999999886655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=0.00017  Score=65.19  Aligned_cols=135  Identities=11%  Similarity=0.078  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                      +|..+.....+.+..+.|...|.++.+..+.....|...|.+-+..     .++.+.|...|+.+++..|.+...|..+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~   77 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-----NKDPKRARKIFERGLKKFPSDPDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-----CS-HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4566666666667777777777777755555566666666554442     15555577888888877788877787777


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      ..+...|+.+.|...|++++..-|...   .+|......-. ..|+.+....+.+++.+..|.+
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhh
Confidence            888888888888888888877655544   34444444423 3788888888888887777764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0530|consensus

Probab=98.13  E-value=0.004  Score=52.96  Aligned_cols=176  Identities=17%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD  152 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  152 (551)
                      ...-..|+.+-..++..+|.   +..+|..+-.++..+ .+..+-++++..++..+|.+-.    .|...-.+....| +
T Consensus        56 ~E~S~RAl~LT~d~i~lNpA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ----vWHHRr~ive~l~-d  127 (318)
T KOG0530|consen   56 NEKSPRALQLTEDAIRLNPA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ----VWHHRRVIVELLG-D  127 (318)
T ss_pred             cccCHHHHHHHHHHHHhCcc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh----HHHHHHHHHHHhc-C
Confidence            34456777777777777776   666666666665544 3556667777777777777743    3333555555666 6


Q ss_pred             HH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        153 FT-KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       153 ~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      +. .-++..+.++..+..+-.+|..+--+...-+.++.-+.+..+.++.+-.+..+|..+-.+.....-....-..+.-+
T Consensus       128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El  207 (318)
T KOG0530|consen  128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELEREL  207 (318)
T ss_pred             cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence            66 66777777777777777777777777777777777777777777776666666554332211111122223445556


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVD  257 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~  257 (551)
                      .+..+.+...|++..+|..+..++..
T Consensus       208 ~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  208 NYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            66666777777777777766666654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.06  E-value=9.9e-06  Score=49.44  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA  286 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  286 (551)
                      ++..+|..|...|++++|+..|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455555555555555555555555555555555555444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.05  E-value=0.0033  Score=57.92  Aligned_cols=187  Identities=17%  Similarity=0.080  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---hCCHHHHHHHHHH-HHhcCCCCHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKV----DPNVADSYYQRGQIYCL---FGQYEEALRNLDK-TIALNPNFHVARA  209 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~l~~~~~~~~~~~  209 (551)
                      ....+-.+|.... +|+.-+...+..-..    -++.+.+.+..|.++.+   .|+.++|+..+.. .....+.+++.+.
T Consensus       143 iv~~lllSyRdiq-dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  143 IVINLLLSYRDIQ-DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             HHHHHHHHhhhhh-hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            3444666777888 888888888776655    34556777778888888   8888888888888 4445566777777


Q ss_pred             HHHHHHHHh---hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        210 QRHFVVHKM---IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA  286 (551)
Q Consensus       210 ~~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  286 (551)
                      ..|.++-..   .........++|+..|.++...+|+.. .-.+++.++...|...+...-+++..          ..+.
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~  290 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIG----------VKLS  290 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHH----------HHHH
Confidence            777776655   123445556777777777777664432 22344444444443222221111111          0011


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .. +.+.|.            ...-.+....-.++.+..-.|++++|...+++++.+.|..-.
T Consensus       291 ~l-lg~kg~------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  291 SL-LGRKGS------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HH-HHhhcc------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            11 000111            011122334445666666677777777777777777655443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=0.00058  Score=55.35  Aligned_cols=140  Identities=20%  Similarity=0.167  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      ...|.........+.. +.....++....+|.+.+-..+...++..+...|++++|+..++.++.. |.+..+...+-.+
T Consensus        54 S~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lR  131 (207)
T COG2976          54 SAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHH
Confidence            3445555555544444 5555666666666665566677788899999999999999999998864 4445555666778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      ++.+...+| .+++|+..+....... -.+......|.++...|+-++|+..|++++...++..
T Consensus       132 LArvq~q~~-k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         132 LARVQLQQK-KADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHhh-hHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            999999999 9999998877543211 1133456789999999999999999999998875443

>KOG2300|consensus

Probab=98.04  E-value=0.011  Score=54.93  Aligned_cols=277  Identities=15%  Similarity=0.039  Sum_probs=170.1

Q ss_pred             chHHHHHHHHHHH-hhhcHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCCCCch
Q psy12713         60 HELDLLSKAKRAF-EHEDYLTAIRHCTEEIESTSSN----HTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTSVDPK  133 (551)
Q Consensus        60 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~~----~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~  133 (551)
                      .+...+..|..++ ...+++.|...++++..+...-    ....++...++.+|.... .+..|...+.+++++....|.
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~  124 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY  124 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence            4556677777664 4678999999999987654322    234677888999998877 889999999999999888887


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------CCCCh-------------------
Q psy12713        134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----------------------DPNVA-------------------  171 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~-------------------  171 (551)
                      +.....+.++....-.. ++..|++.+.-....                       .++..                   
T Consensus       125 wsckllfQLaql~~idk-D~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd  203 (629)
T KOG2300|consen  125 WSCKLLFQLAQLHIIDK-DFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD  203 (629)
T ss_pred             hhHHHHHHHHHHHhhhc-cchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence            77778888999988888 888888765321110                       11110                   


Q ss_pred             --------hHHHHHHHH-HHHhCCHHHHHHHHHHH---Hhc-CCC-----------------------CHHHHHHHHHHH
Q psy12713        172 --------DSYYQRGQI-YCLFGQYEEALRNLDKT---IAL-NPN-----------------------FHVARAQRHFVV  215 (551)
Q Consensus       172 --------~~~~~la~~-~~~~~~~~~A~~~~~~~---l~~-~~~-----------------------~~~~~~~~~~~~  215 (551)
                              ..+..+-.+ |...|+...+...+++.   +.. .+.                       ...+...+..+.
T Consensus       204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~  283 (629)
T KOG2300|consen  204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI  283 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence                    112222222 23345554444444432   211 110                       011122222221


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHH------hCCCcHH--------HHHHHHHHHHhccCHHHHHHHHHHHHhc---CCC-
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVD------THSNVVE--------ACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPE-  277 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~-  277 (551)
                          .-...|-+++|.++-++++.      ..+....        .+-.+..+-.-.|++.+|++....+.+.   .|. 
T Consensus       284 ----hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~  359 (629)
T KOG2300|consen  284 ----HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP  359 (629)
T ss_pred             ----hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch
Confidence                11122555555555555542      3443332        3345666777789999998877766554   344 


Q ss_pred             ------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        278 ------NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       278 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                            .+.+...+|.-... .+.++.|...|..+.+.....   ...-.++|..|.+.|+-+.-.+.++..-.
T Consensus       360 ~Llr~~~~~ih~LlGlys~s-v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p  432 (629)
T KOG2300|consen  360 LLLRAHEAQIHMLLGLYSHS-VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP  432 (629)
T ss_pred             HHHHHhHHHHHHHHhhHhhh-cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC
Confidence                  23456667765444 889999999999888764332   33455788999998887776666665433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.02  E-value=0.0006  Score=66.41  Aligned_cols=159  Identities=18%  Similarity=0.128  Sum_probs=119.7

Q ss_pred             HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----hcCC--ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPG--DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       183 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      -.|+-+.+++.+.++.+ .++-......+..+.+..    ..-.  .....+.|.+.+.......|+..-..+..|+++.
T Consensus       200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            36899999999999887 333222222222222222    1222  4577889999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHhCCH-
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRGRL-  330 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~-  330 (551)
                      ..|+.++|++.|++++......    .-.++.++.++.. +++|++|..++.+..+.+.-+ ....+..|.++...|+. 
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~  357 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE  357 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence            9999999999999988543332    2357789999877 999999999999999875543 44556778899999999 


Q ss_pred             ------HHHHHHHHHhccc
Q psy12713        331 ------EEAVKCFNKALPL  343 (551)
Q Consensus       331 ------~~A~~~~~~a~~~  343 (551)
                            ++|.++|.++-..
T Consensus       358 ~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence                  7777777766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00064  Score=59.08  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      .+.-+..+......|++.+|...|..++...|+   +.++...++.|+...|+.+.|...+...-............+..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            345567788899999999999999999999999   89999999999999999999999887754433332111111112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                         ..+.+.. ...+ ...+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+..
T Consensus       211 ---~ll~qaa-~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         211 ---ELLEQAA-ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             ---HHHHHHh-cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence               2222222 2222 23455667789999999999999999999999999999888877654

>KOG3616|consensus

Probab=98.01  E-value=0.0031  Score=61.46  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        314 MFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      ......+|.-+...|+...|...|-++-.
T Consensus       882 ~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             hHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            45677888888888999999888876643

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.00  E-value=0.025  Score=57.69  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCC--h----hHHHHHHHHHHHhCCHH
Q psy12713        116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL-HAASDFTKAFADLDEAEKVDPNV--A----DSYYQRGQIYCLFGQYE  188 (551)
Q Consensus       116 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~la~~~~~~~~~~  188 (551)
                      .|+++++-+++..+-.|...+.+.+.+|.++. ... +++.|..++++++.+...+  .    .+.+.++.++.+.+...
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            45666666665444445555666667777766 444 7777777777776654322  1    23345566666666655


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--CCcHHH----HHHHHHHHHhccCHH
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--SNVVEA----CTLFAQVLVDQEDFD  262 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~----~~~la~~~~~~~~~~  262 (551)
                       |...+++.++..............-+.+.......+++..|++.++......  +.++.+    ....+.++...+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             7777777666544311111111111111111111167777777777766554  233322    223345555666666


Q ss_pred             HHHHHHHHHH
Q psy12713        263 GAEEYFNRSI  272 (551)
Q Consensus       263 ~A~~~~~~~~  272 (551)
                      ++++..+++.
T Consensus       197 d~~~~l~~~~  206 (608)
T PF10345_consen  197 DVLELLQRAI  206 (608)
T ss_pred             hHHHHHHHHH
Confidence            6766666653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0545|consensus

Probab=98.00  E-value=0.00014  Score=60.77  Aligned_cols=108  Identities=12%  Similarity=0.181  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhh--------cCCCCchhH------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVE--------DTSVDPKIK------VNAHIKRAVVHLHAASDFTKAFADLDEA  163 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~------~~~~~~la~~~~~~~~~~~~A~~~~~~~  163 (551)
                      ..++...|+-+++.|+|.+|...|..++.        -.|.++++.      ...+.+.+.|+...| +|-++++.....
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~sei  256 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSEI  256 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHHH
Confidence            44556666666777777777666666643        245554432      225667888999999 999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Q psy12713        164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV  206 (551)
Q Consensus       164 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~  206 (551)
                      +..+|.+..+++..|......=+..+|...|.++++++|.-..
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999988888899999999999998886543

>KOG0376|consensus

Probab=98.00  E-value=1.6e-05  Score=73.33  Aligned_cols=119  Identities=22%  Similarity=0.300  Sum_probs=82.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713        251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL  330 (551)
Q Consensus       251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  330 (551)
                      -+...+..+.++.|+..|.++++++|+++..+-+.+..++. .+++..|+..+.++++.+|....+|+..|.+....+++
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            34455556677777777777777777777777777666565 77777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHh
Q psy12713        331 EEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY  370 (551)
Q Consensus       331 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (551)
                      .+|...|++...+.|+++.+...+.-+.......+.....
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            7777777777777777777766666665555554444443

>KOG2610|consensus

Probab=97.99  E-value=0.00048  Score=60.49  Aligned_cols=161  Identities=14%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC---hhHHHH
Q psy12713        101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV---ADSYYQ  176 (551)
Q Consensus       101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~  176 (551)
                      ...-+.+.+..|++.+|...+++.++..|.+    ..++..--..++..| +...-...+++++.. +|+.   ..+.-.
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtD----lla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~dlp~~sYv~Gm  180 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTD----LLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNADLPCYSYVHGM  180 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchh----hhhhhhhhhHHHhcc-chhhhhhHHHHhccccCCCCcHHHHHHHH
Confidence            3344555666777777777777777777766    334444555666677 777777777777766 5555   334445


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV----VEACTLFA  252 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la  252 (551)
                      ++-.+...|-|++|.+..+++++++|.+..+...++.++-..      |+..++.+...+.-..-...    ..-|...+
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~------~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A  254 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN------GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA  254 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc------chhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence            666677777777888777788877777777776666555444      77777777776654332221    12344567


Q ss_pred             HHHHhccCHHHHHHHHHHHH
Q psy12713        253 QVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~  272 (551)
                      .+++..+.++.|+++|.+-+
T Consensus       255 l~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  255 LFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HhhhcccchhHHHHHHHHHH
Confidence            77777788888888877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.98  E-value=7.8e-06  Score=46.28  Aligned_cols=32  Identities=31%  Similarity=0.510  Sum_probs=22.1

Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAV  334 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  334 (551)
                      |+++++.+|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56666777777777777777777777776664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.96  E-value=0.001  Score=62.10  Aligned_cols=144  Identities=15%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      +..-..+.. +.+.-++...+|++++|+.+++|..++.-  ......+|..+++++++.....-..              
T Consensus       174 IMq~AWRER-np~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~--------------  236 (539)
T PF04184_consen  174 IMQKAWRER-NPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGK--------------  236 (539)
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhch--------------
Confidence            444555666 78888888889999999888888877653  2334667777777777643221000              


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHH
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVD  297 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~  297 (551)
                         ....+....+-......+.+  ..+...+|.+..+.|+.++|++.++..++..|.  +..+..++..+++. .+.|.
T Consensus       237 ---s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Ya  312 (539)
T PF04184_consen  237 ---SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYA  312 (539)
T ss_pred             ---hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHH
Confidence               00000000000111111111  223345566666666666666666666655443  23455555555555 66666


Q ss_pred             HHHHHHHHH
Q psy12713        298 EAIKLIEKA  306 (551)
Q Consensus       298 ~A~~~~~~~  306 (551)
                      ++...+.+.
T Consensus       313 d~q~lL~kY  321 (539)
T PF04184_consen  313 DVQALLAKY  321 (539)
T ss_pred             HHHHHHHHh
Confidence            666666554

The molecular function of this protein is uncertain.

>KOG0551|consensus

Probab=97.94  E-value=0.0001  Score=64.51  Aligned_cols=105  Identities=17%  Similarity=0.270  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.-+-.-|+-|++..+|..|+..|.+.++....++++....|.+.+-+....| +|..|+....+++..+|.+..+++.
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-NYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCcchhhhhhh
Confidence            455666678888888888888888888888877778877778888888888888 8888888888888888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      -+.|+..+..+.+|..+++..+.++.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            88888888888888888887766543

>KOG3616|consensus

Probab=97.93  E-value=0.0089  Score=58.50  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=115.3

Q ss_pred             HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713         71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA  150 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  150 (551)
                      .+..|+|+.|..+++ .+...|+   ....|..++......|+.--|..+|...-...             .++.+.   
T Consensus       454 aid~~df~ra~afle-s~~~~~d---a~amw~~laelale~~nl~iaercfaai~dva-------------k~r~lh---  513 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLE-SLEMGPD---AEAMWIRLAELALEAGNLFIAERCFAAIGDVA-------------KARFLH---  513 (1636)
T ss_pred             ccccCchHHHHHHHH-hhccCcc---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-------------HHHHHH---
Confidence            467899999987776 5788887   77889999999888888888777765432210             111111   


Q ss_pred             CCHHHHHHHHHH-HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHH
Q psy12713        151 SDFTKAFADLDE-AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ  229 (551)
Q Consensus       151 ~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (551)
                          +-.+...+ .+++..+-.+.|...+.+.+...++.+|...|-+     .+....-.         ..|..+.+|++
T Consensus       514 ----d~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifle-----qn~te~ai---------gmy~~lhkwde  575 (1636)
T KOG3616|consen  514 ----DILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLE-----QNATEEAI---------GMYQELHKWDE  575 (1636)
T ss_pred             ----HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHh-----cccHHHHH---------HHHHHHHhHHH
Confidence                11111111 2334455566677777777777777777766533     11111111         12222366777


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                      |+...+.  .-.|.........-+.++..|+-++|-+.       ...+.+.+.. ..+|+. .|.+-.|......--.+
T Consensus       576 ~i~lae~--~~~p~~eklk~sy~q~l~dt~qd~ka~el-------k~sdgd~laa-iqlyik-a~~p~~a~~~a~n~~~l  644 (1636)
T KOG3616|consen  576 AIALAEA--KGHPALEKLKRSYLQALMDTGQDEKAAEL-------KESDGDGLAA-IQLYIK-AGKPAKAARAALNDEEL  644 (1636)
T ss_pred             HHHHHHh--cCChHHHHHHHHHHHHHHhcCchhhhhhh-------ccccCccHHH-HHHHHH-cCCchHHHHhhcCHHHh
Confidence            7665432  12333333333444455556665555432       1111111111 122333 55554444322111000


Q ss_pred             CcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        310 DKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       310 ~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      ..+            ..+.|-.-|.++.+..++++|+++|++.
T Consensus       645 ~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkg  687 (1636)
T KOG3616|consen  645 LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKG  687 (1636)
T ss_pred             hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcc
Confidence            000            1345566677777888888888887753

>KOG0376|consensus

Probab=97.92  E-value=2e-05  Score=72.64  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      ..+-.+|...+..++|+.|+..|.++|+.+|+   .+..+-.++.++.+.+++..|+..+.++++.+|..    ..+|+.
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~----~K~Y~r   77 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTY----IKAYVR   77 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchh----hheeee
Confidence            34456788899999999999999999999998   88888899999999999999999999999999876    567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC  182 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  182 (551)
                      .|......+ .+.+|...|+......|+.+.+...+..|-.
T Consensus        78 rg~a~m~l~-~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   78 RGTAVMALG-EFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             ccHHHHhHH-HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999 9999999999999999999988777766543

>KOG0551|consensus

Probab=97.91  E-value=0.00011  Score=64.36  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=95.5

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch
Q psy12713         55 DTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK  133 (551)
Q Consensus        55 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  133 (551)
                      ..+...+..+-..|..++...+|..|+..|.+.|.....+ ..++..|.++|.+.+..|+|..|+....+++.++|.+  
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--  152 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--  152 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--
Confidence            3445578888999999999999999999999999876443 4678889999999999999999999999999999998  


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713        134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP  168 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~  168 (551)
                        ..+++.-+.|++.+. ++..|...++..+.++.
T Consensus       153 --~Ka~~R~Akc~~eLe-~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  153 --LKAYIRGAKCLLELE-RFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             --hhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhhH
Confidence              567788999999999 99999999998865543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.91  E-value=0.0034  Score=57.81  Aligned_cols=120  Identities=18%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH-HHHhCCCcH
Q psy12713        171 ADSYYQRGQIYCLFGQYEEALRNLDKTIAL----NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN-FVDTHSNVV  245 (551)
Q Consensus       171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~  245 (551)
                      +++...+-..|....+|+.-++..+..-.+    -++.+......+.++.+.   ...|+.++|+..+.. .....+.++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr---n~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR---NKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc---ccCCCHHHHHHHHHHHHhccCCCCh
Confidence            567777888899999999999999887766    445666667777666551   235999999999999 555667788


Q ss_pred             HHHHHHHHHHHh---------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        246 EACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       246 ~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      +.+..+|.+|-.         ....++|+..|.++.+.+|+.... .+++.++.. .|.
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~-~g~  274 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLML-AGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHH-cCC
Confidence            999999998853         234678999999999988654333 344444344 554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.90  E-value=1.4e-05  Score=45.67  Aligned_cols=33  Identities=45%  Similarity=0.897  Sum_probs=30.6

Q ss_pred             HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999964

...

>KOG0545|consensus

Probab=97.89  E-value=0.00017  Score=60.23  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS  308 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  308 (551)
                      ++..-|+-++..|+|.+|...|..++..        .|..          ...+.+...|++. .|+|-++++....++.
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHh
Confidence            3444555555666666666555555432        2332          4467788889887 8999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        309 IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      ..|.+..+++..|.++...=+.++|...|.++++++|.-..
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            99999999999999999999999999999999999987554

>KOG0530|consensus

Probab=97.88  E-value=0.011  Score=50.48  Aligned_cols=249  Identities=16%  Similarity=0.182  Sum_probs=172.8

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      ..+|.++..+|+.++..+..   .                 ..|+..-..++.++|.+-.+    |...-.++..++.+.
T Consensus        39 te~fr~~m~YfRAI~~~~E~---S-----------------~RAl~LT~d~i~lNpAnYTV----W~yRr~iL~~l~~dL   94 (318)
T KOG0530|consen   39 TEDFRDVMDYFRAIIAKNEK---S-----------------PRALQLTEDAIRLNPANYTV----WQYRRVILRHLMSDL   94 (318)
T ss_pred             chhHHHHHHHHHHHHhcccc---C-----------------HHHHHHHHHHHHhCcccchH----HHHHHHHHHHhHHHH
Confidence            35688888888877776664   3                 45666677788889988543    333555555554378


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE-EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK  232 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  232 (551)
                      .+-++++...+..+|.+-.+|..+-.+....|++. .-++..+.++..+.++-.+|..+-++....      +.++.-+.
T Consensus        95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F------~~~~~EL~  168 (318)
T KOG0530|consen   95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFF------KDYEDELA  168 (318)
T ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHH------hhHHHHHH
Confidence            88899999999999999999999999999999988 888999999999999999998888777766      88999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHh-cc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy12713        233 EFRNFVDTHSNVVEACTLFAQVLVD-QE-----DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKLIE  304 (551)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~  304 (551)
                      +..++++.+-.+-.+|+..--+... .|     ..+.-+.+..+.+...|++..+|..+..++-...|  .+..-.....
T Consensus       169 y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~  248 (318)
T KOG0530|consen  169 YADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVE  248 (318)
T ss_pred             HHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHH
Confidence            9999999887666666543222111 11     23445667788899999999999988877332233  2344455555


Q ss_pred             HHH-hcCcCCHHHHHHHHHHHHH------hCCHH---HHHHHHHHhc-ccccCHHHHHH
Q psy12713        305 KAI-SIDKSCMFAYETLGTIEVQ------RGRLE---EAVKCFNKAL-PLARDEAELSH  352 (551)
Q Consensus       305 ~~~-~~~~~~~~~~~~l~~~~~~------~g~~~---~A~~~~~~a~-~~~~~~~~~~~  352 (551)
                      ... +....+|..+-.+..+|..      .+.-+   +|.+.++..- +.+|-....|.
T Consensus       249 ~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~  307 (318)
T KOG0530|consen  249 NLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWR  307 (318)
T ss_pred             HHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            554 3444556666666666622      22223   4555555543 55555444433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=4e-05  Score=43.73  Aligned_cols=33  Identities=39%  Similarity=0.541  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1550|consensus

Probab=97.79  E-value=0.017  Score=57.85  Aligned_cols=180  Identities=18%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcCC
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLF-----GQYEEALRNLDKTIAL-----NPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      ...|..+++.+.+.  .+..+...+|.+|..-     .+.+.|+.+++.+...     .-.++.+...+|.++.....-.
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677888777654  4567777788877654     5788999999988761     1114456667777776641111


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNV  296 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~  296 (551)
                       .-+...|+.++.++-..  +++.+.+.+|.++....   +...|.++|..+...  .+..+.+.++.++..-   .-+.
T Consensus       306 -~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  306 -KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             -cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence             11788888888887765  34556777787777655   567888888887754  4567788888885432   1267


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHhc
Q psy12713        297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQR-GRLEEAVKCFNKAL  341 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~  341 (551)
                      ..|..++.++.+..  ++.+.+.++.++..- +.++.+...+...-
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence            88888888888776  455556666555433 56655555554443

>KOG1550|consensus

Probab=97.78  E-value=0.054  Score=54.42  Aligned_cols=180  Identities=15%  Similarity=0.115  Sum_probs=130.1

Q ss_pred             chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHH
Q psy12713        114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA-----ASDFTKAFADLDEAEKV-----DPNVADSYYQRGQIYCL  183 (551)
Q Consensus       114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~  183 (551)
                      ...|..+++.+.+...      ..+...+|.++..-     . +.+.|+.+++.+...     ...++.+.+.+|.+|..
T Consensus       228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~-d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQ-DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc
Confidence            4568888888776543      33556678777665     4 899999999999771     12256688899999988


Q ss_pred             hC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q psy12713        184 FG-----QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ  258 (551)
Q Consensus       184 ~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  258 (551)
                      ..     ++..|..++.++....  ++.+.+.+|.++....   ...+...|..+|..+...  .+..+.+.++.+|..-
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            43     7788999999998765  4566677887766542   235678999999988764  5677888888888653


Q ss_pred             ----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        259 ----EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       259 ----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                          .+...|..++.++.+..  .+.+.+.++..+....+.++.+...+....+.
T Consensus       374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence                47899999999999887  55666666666554346666666655544443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.78  E-value=0.061  Score=54.96  Aligned_cols=276  Identities=17%  Similarity=0.155  Sum_probs=172.1

Q ss_pred             CCCcchHHHHHHHHHHH-hhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC
Q psy12713         56 TNESHELDLLSKAKRAF-EHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD  131 (551)
Q Consensus        56 ~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  131 (551)
                      ++...+...++.|..++ ...+++.|..++++++......   .....+.+.++.++.+.+... |...+++.++.....
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            33447888999999998 6789999999999998776432   234556677889988888777 999999998865442


Q ss_pred             chh-HHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC--CCChh----HHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Q psy12713        132 PKI-KVNAHIKR-AVVHLHAASDFTKAFADLDEAEKVD--PNVAD----SYYQRGQIYCLFGQYEEALRNLDKTIAL---  200 (551)
Q Consensus       132 ~~~-~~~~~~~l-a~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~---  200 (551)
                      +.. +..++..+ .......+ ++..|++.++......  +.++.    +....+.+....+..+++++..+++...   
T Consensus       133 ~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~  211 (608)
T PF10345_consen  133 GHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS  211 (608)
T ss_pred             CchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence            211 12222222 33333447 9999999999988765  34433    2334466677778888888888877432   


Q ss_pred             ---CCCC----HHHHHHHHHHHHHhhcCCChhHHHHHHHH---HHHHHHh---CC---C---c-----------------
Q psy12713        201 ---NPNF----HVARAQRHFVVHKMIVPGDRERVEQSLKE---FRNFVDT---HS---N---V-----------------  244 (551)
Q Consensus       201 ---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~---~~~~~~~---~~---~---~-----------------  244 (551)
                         +|+.    ..++..+-.+    ......|++..+...   ++..+..   .+   .   +                 
T Consensus       212 ~q~~~~~~~~qL~~~~lll~l----~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~  287 (608)
T PF10345_consen  212 LQLDPSVHIPQLKALFLLLDL----CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGT  287 (608)
T ss_pred             cccCCCCCcHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCc
Confidence               2221    2222222222    112222444343333   3333321   11   0   0                 


Q ss_pred             H-------------HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHH
Q psy12713        245 V-------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------PEN-------------------ASLYVHR  285 (551)
Q Consensus       245 ~-------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l  285 (551)
                      +             -++..-|......|..++|.+++.++++.-       +..                   .......
T Consensus       288 ~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~  367 (608)
T PF10345_consen  288 PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQ  367 (608)
T ss_pred             eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHH
Confidence            0             123344556666777778888888776531       111                   0122344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC---cC------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        286 AMLMLQARGNVDEAIKLIEKAISID---KS------CMFAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       286 ~~~~~~~~~~~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      +.+.+. .+++..|...++.+.+..   |.      .+..++..|..+...|+.+.|...|.
T Consensus       368 ~~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  368 IWCNFI-RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHH-CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            555555 899999999888776542   22      37788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1258|consensus

Probab=97.75  E-value=0.046  Score=52.75  Aligned_cols=264  Identities=9%  Similarity=-0.013  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH-HhcCCHHHH
Q psy12713         78 LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL-HAASDFTKA  156 (551)
Q Consensus        78 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~~A  156 (551)
                      +.+...|...|...|-   ....|...|..-.+.|..+.+.+.|++++.--|-+...+..    ...... ..| +...-
T Consensus        62 ~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~----Y~~f~~n~~~-d~~~l  133 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLS----YLAFLKNNNG-DPETL  133 (577)
T ss_pred             HHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHhccCC-CHHHH
Confidence            5566667777777776   66777777888888888888888888888877755443322    222222 333 66666


Q ss_pred             HHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH------------------------
Q psy12713        157 FADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA------------------------  209 (551)
Q Consensus       157 ~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~------------------------  209 (551)
                      ...|++|......+   ...|-..-..-..++++..-...|++.++.--.....++                        
T Consensus       134 r~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l  213 (577)
T KOG1258|consen  134 RDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQL  213 (577)
T ss_pred             HHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence            66677766654332   223333333334444555555555554443111000000                        


Q ss_pred             ---------------------------------------HHHHHH-HHhhcCCChhHHHHHHHHHHHHHHh-----CCC-
Q psy12713        210 ---------------------------------------QRHFVV-HKMIVPGDRERVEQSLKEFRNFVDT-----HSN-  243 (551)
Q Consensus       210 ---------------------------------------~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~-  243 (551)
                                                             .+.... .+..++.......+.+..++..++.     .|. 
T Consensus       214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~  293 (577)
T KOG1258|consen  214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD  293 (577)
T ss_pred             hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence                                                   000000 0001111111112222222222211     111 


Q ss_pred             --cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Q psy12713        244 --VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETL  320 (551)
Q Consensus       244 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  320 (551)
                        ....|......-...|+++.....|++++--.......|...+..... .|+.+-|...+.++.+.. |..+.....-
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~  372 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLE  372 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence              234566666677777888888888888877777777788777776444 688877777777777654 5556677777


Q ss_pred             HHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        321 GTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       321 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      +.+....|++..|...+++..+..|+...+
T Consensus       373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~  402 (577)
T KOG1258|consen  373 ARFEESNGNFDDAKVILQRIESEYPGLVEV  402 (577)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence            777777888888888888887776765543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.75  E-value=0.031  Score=50.69  Aligned_cols=131  Identities=14%  Similarity=0.011  Sum_probs=99.2

Q ss_pred             HHhhhcHHHHHHHHHHHhhcC----CCc-hhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhc----C------CCCchh
Q psy12713         71 AFEHEDYLTAIRHCTEEIEST----SSN-HTKALARLLRATVYIFTS-QSTKAIEDLTQLVED----T------SVDPKI  134 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~----~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~----~------~~~~~~  134 (551)
                      ...+||++.|..++.++-...    |+. ..-...++..|......+ +++.|...++++.+.    .      |+....
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999876544    322 445678889999999999 999999999999886    2      122245


Q ss_pred             HHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        135 KVNAHIKRAVVHLHAASDF---TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      +...+..++.++...+ .+   ++|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+
T Consensus        83 r~~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWD-TYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            5667888999998887 54   4566666666667788888886666677668889999999988887543

It is also involved in sporulation [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.72  E-value=0.021  Score=57.55  Aligned_cols=244  Identities=17%  Similarity=0.084  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-----CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-----DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-  170 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-  170 (551)
                      ++......+.......++.+|.....++...-+.     .........-..|.+....| ++++|....+.++..-|.+ 
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccccc
Confidence            4455566788888889999999998887765433     22223333444778888899 9999999999999887765 


Q ss_pred             ----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH--HHHHHHHHHHHHH----h
Q psy12713        171 ----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER--VEQSLKEFRNFVD----T  240 (551)
Q Consensus       171 ----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~----~  240 (551)
                          ..+...+|.+..-.|++++|..+...+.+........++..-..+....+...+|+  +.+....+...-.    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q  572 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ  572 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence                45677889999999999999999998887744332222221111112244444563  3333333333222    2


Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      .|.........+.++...-+++.+.......++.    .|....   ..+.++.+.+. .|++++|...+........+.
T Consensus       573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~-~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL-RGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC
Confidence            2333223333333333333355555555555443    233222   22478888777 999999999998887653322


Q ss_pred             -------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        314 -------MFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       314 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                             ..+..........+|+.+.|.....+...
T Consensus       652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~  687 (894)
T COG2909         652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD  687 (894)
T ss_pred             CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence                   11222233445567899999888887443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=8.2e-05  Score=42.43  Aligned_cols=31  Identities=19%  Similarity=0.128  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713        100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSV  130 (551)
Q Consensus       100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  130 (551)
                      +++.+|.+++.+|++++|++.|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444555555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.69  E-value=0.052  Score=51.53  Aligned_cols=66  Identities=21%  Similarity=0.364  Sum_probs=46.7

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP----ENASLYVHRAMLMLQARGNVDEAIKLIEKAIS  308 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  308 (551)
                      ......+...+.+..+.|+++.|...+.++....+    ..+.+.+..+.+... .|+..+|+..++..+.
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLK  212 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            34456777888888888888888888887776542    135566666777666 7888888887777776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.025  Score=53.71  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-----------------------
Q psy12713        225 ERVEQSLKEFRNFVDTHS----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-P-----------------------  276 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-----------------------  276 (551)
                      |.++.|...+.++....+    ..+.+....+.++...|+..+|+..++..+... .                       
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVIS  239 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccc
Confidence            666666666666555431    134555556666666666666666665555510 0                       


Q ss_pred             ----------CCHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH----------
Q psy12713        277 ----------ENASLYVHRAMLMLQAR------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL----------  330 (551)
Q Consensus       277 ----------~~~~~~~~l~~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------  330 (551)
                                ....++..+|..... .      +..+++...|.++++.+|....+|..+|..+...-+.          
T Consensus       240 ~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~  318 (352)
T PF02259_consen  240 STNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQ  318 (352)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccch
Confidence                      002234445544333 4      7788888888888888888888888888776554221          


Q ss_pred             -------HHHHHHHHHhcccccC
Q psy12713        331 -------EEAVKCFNKALPLARD  346 (551)
Q Consensus       331 -------~~A~~~~~~a~~~~~~  346 (551)
                             ..|+..|-+++...+.
T Consensus       319 ~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  319 EDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHhhCCC
Confidence                   2366666666666655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.0031  Score=51.30  Aligned_cols=105  Identities=23%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+-..+..|......|++++|+..++.++....+......+-..+|.+...+|.+++|+..++....     +.+.....
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-----~~w~~~~~  162 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-----ESWAAIVA  162 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-----ccHHHHHH
Confidence            4566788999999999999999999999977666556677888999999999999999999876543     22223344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV  170 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~  170 (551)
                      ...|.++...| +-++|+..|++++...++.
T Consensus       163 elrGDill~kg-~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         163 ELRGDILLAKG-DKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHhhhHHHHcC-chHHHHHHHHHHHHccCCh
Confidence            56899999999 9999999999999987544

>KOG1914|consensus

Probab=97.62  E-value=0.027  Score=53.38  Aligned_cols=217  Identities=11%  Similarity=0.010  Sum_probs=111.6

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--------------chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713         83 HCTEEIESTSSNHTKALARLLRATVYIFTSQ--------------STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH  148 (551)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  148 (551)
                      .+++++..-+.   .+++|+..+..+...++              .+++..++++++.......   ...++.++..--.
T Consensus       267 ayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~---~~Ly~~~a~~eE~  340 (656)
T KOG1914|consen  267 AYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN---KLLYFALADYEES  340 (656)
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHH
Confidence            45555555554   66666665555555444              4566666666665322110   1111222221111


Q ss_pred             hc--CCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        149 AA--SDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       149 ~~--~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      .-  +.++..-..+++++.....+ .-+|..+-..-.+..-...|...|.++-+.......++..-+.+-+     ...+
T Consensus       341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy-----~csk  415 (656)
T KOG1914|consen  341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY-----YCSK  415 (656)
T ss_pred             hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH-----HhcC
Confidence            11  02455555666666543322 2344455555555666666777777766544333333333332211     1236


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENA-SLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                      +.+-|...|+-.++..++.+.........+...++-..|...|++++..  .++.. .+|-..-. |-..-|+....+++
T Consensus       416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-yES~vGdL~si~~l  494 (656)
T KOG1914|consen  416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-YESNVGDLNSILKL  494 (656)
T ss_pred             ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-HHHhcccHHHHHHH
Confidence            6777777777777777777776666677777777777777777777665  22222 23332222 22225666666655


Q ss_pred             HHHHHhcCc
Q psy12713        303 IEKAISIDK  311 (551)
Q Consensus       303 ~~~~~~~~~  311 (551)
                      -++-....|
T Consensus       495 ekR~~~af~  503 (656)
T KOG1914|consen  495 EKRRFTAFP  503 (656)
T ss_pred             HHHHHHhcc
Confidence            555444443

>KOG4507|consensus

Probab=97.54  E-value=0.0068  Score=57.68  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=84.7

Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK  335 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  335 (551)
                      ..|+...|+.++..++...|.... ...+++.+.+. .|-...|-..+.+++.+....+..++.+|..+..+.+.+.|++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            467888888888888888776543 56788888676 7888889999999999988888999999999999999999999


Q ss_pred             HHHHhcccccCHHHHHHHHhHH
Q psy12713        336 CFNKALPLARDEAELSHIYSLR  357 (551)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~~~~  357 (551)
                      .|+.|++++|++++....+...
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999998876655444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.53  E-value=0.075  Score=49.39  Aligned_cols=142  Identities=7%  Similarity=-0.036  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV-NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .-.+...|-++.+++++.+|.+.|.++.+...+++.... ..+.++..-.+-++ +.+.-...+-..-+..|..+....-
T Consensus         6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF   84 (549)
T PF07079_consen    6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLF   84 (549)
T ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHH
Confidence            345667789999999999999999999887665544322 33433444444455 6777666666666778888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHH---HhhcCCChhHHHHHHHHHHHHHHh
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARA------QRHFVVH---KMIVPGDRERVEQSLKEFRNFVDT  240 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~  240 (551)
                      .|...++.+++.+|++.+..-...-......+.      ......+   ....+...|++.++...+++.+..
T Consensus        85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            999999999999999987765543211111111      0000000   003444559999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1308|consensus

Probab=97.51  E-value=3e-05  Score=68.10  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      .+..|.++.|++.|..+++++|..+..|-.+|.+++++++...|+..+..+++++|+....+-.+|.....+|++.+|-.
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999998888888888888888888877


Q ss_pred             hhcccchhhh
Q psy12713        539 DEFMIPKITY  548 (551)
Q Consensus       539 ~~~~~~~~~~  548 (551)
                      +.-...+..|
T Consensus       204 dl~~a~kld~  213 (377)
T KOG1308|consen  204 DLALACKLDY  213 (377)
T ss_pred             HHHHHHhccc
Confidence            6655555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.013  Score=51.35  Aligned_cols=129  Identities=17%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      +..+.-....| ++.+|...+..++...|.+.++...++.++...|+.+.|...+...-...... ......+.+-+. .
T Consensus       138 ~~~~~~~~~~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll-~  214 (304)
T COG3118         138 LAEAKELIEAE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELL-E  214 (304)
T ss_pred             HHHhhhhhhcc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHH-H
Confidence            44677788889 99999999999999999999999999999999999999988877643222211 111101100000 0


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                      .....++    ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+
T Consensus       215 qaa~~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         215 QAAATPE----IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHhcCCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            0011111    123444556677777777788888888888888777776666654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.49  E-value=0.005  Score=49.68  Aligned_cols=62  Identities=26%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      .+...++..+...| ++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++..
T Consensus        63 ~~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            35556778888888 999999999999999999999999999999999999999988887754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.49  E-value=0.00014  Score=41.11  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=30.8

Q ss_pred             HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>KOG0985|consensus

Probab=97.49  E-value=0.16  Score=52.13  Aligned_cols=205  Identities=16%  Similarity=0.104  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      ++....-..+++..+-..+-++.+++.+-.+.-..+. .+ +-++-..-.-.- +.....++.++.-..+..      .+
T Consensus       984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~-~n-LQnLLiLtAika-d~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen  984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN-RN-LQNLLILTAIKA-DRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred             hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc-hh-hhhhHHHHHhhc-ChHHHHHHHHHhccCCch------hH
Confidence            3344444455556666667777777765332111110 11 111111111122 444555555554333221      23


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD  257 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  257 (551)
                      |.+....+-|++|...|++--    -+..+..-+.         ..-+..+.|.+..+++     +.+.+|..+|....+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~VLi---------e~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQVLI---------ENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHH---------HHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh
Confidence            555566666777777766521    1222211111         1115566666555543     446677777777777


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC  336 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  336 (551)
                      .|...+|++.|-++     +++..+.....+.-+ .|.|++-+.++..+-+.... +.+-..+..+|.+.++..+-.+.
T Consensus      1117 ~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             cCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHH
Confidence            77777777777553     445555555555344 77777777777666544322 33334455556666666554443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.032  Score=44.45  Aligned_cols=153  Identities=14%  Similarity=0.117  Sum_probs=115.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....-|..+..+.+.+..++|+..|..+-+..-. .+...+.+..|.+....|+...|+..|..+-...|-....+-.+-
T Consensus        57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            4566788899999999999999999987766544 345678888999999999999999999998876654433334455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAE-KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ..-+..+...| .|+.-....+..- ..+|-...+.-.||..-++.|++.+|...|.++.. +...+....+.+.+.
T Consensus       136 lraa~lLvD~g-sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         136 LRAAYLLVDNG-SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHHHHHhccc-cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            66778888889 8988776665443 22444466777899999999999999999999876 444455555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.0065  Score=49.05  Aligned_cols=62  Identities=24%  Similarity=0.356  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +...++..+.. .|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....
T Consensus        64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34455665566 899999999999999999999999999999999999999999999988654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.42  E-value=9.2e-05  Score=42.70  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=25.1

Q ss_pred             HHhhhhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy12713        485 SYYQRGQIYCLFGQYEEALRNLDKTIALNP  514 (551)
Q Consensus       485 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  514 (551)
                      +|.++|.+|...|++++|+++|++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478899999999999999999999765543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.41  E-value=0.00082  Score=42.22  Aligned_cols=46  Identities=22%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      +.+|.+|..+.++|+|++|..+.+.+++++|+|..+......+-.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999988777666544

>KOG3783|consensus

Probab=97.35  E-value=0.062  Score=51.16  Aligned_cols=245  Identities=15%  Similarity=0.093  Sum_probs=131.4

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713         79 TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA  158 (551)
Q Consensus        79 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~  158 (551)
                      ...+.+.......|+   .+...+..+..+...|+.+.|+..++..+.  +.-..+....++.+|.++..+. +|..|-.
T Consensus       251 ~~~~~Ll~~~~~~p~---ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~-~~~~aad  324 (546)
T KOG3783|consen  251 ECEKALKKYRKRYPK---GALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQH-QYSRAAD  324 (546)
T ss_pred             HHHHHhHHHHHhCCC---CccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            334444444555665   666666777777777777777777777766  4444455556677788888888 8888888


Q ss_pred             HHHHHHhcCCCChhHHHHHH-HHHHH--------hCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        159 DLDEAEKVDPNVADSYYQRG-QIYCL--------FGQYEEALRNLDKTI---ALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      .+....+.+.-+.-.|..++ -|+..        .|+-+.|..+++...   ...|++...               +..-
T Consensus       325 ~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~---------------E~f~  389 (546)
T KOG3783|consen  325 SFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL---------------EKFI  389 (546)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch---------------hHHH
Confidence            88777666544333343333 33322        223333333333222   222221111               1111


Q ss_pred             HHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHh--ccCHHHHHHHHHHHH---hc-CCCCHH-HHHHHHHHHHHhcCCHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVE--ACTLFAQVLVD--QEDFDGAEEYFNRSI---RV-DPENAS-LYVHRAMLMLQARGNVD  297 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~--~~~~~~A~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~  297 (551)
                      ..++.+.-.+.- .++..+.  .+..++.++..  ....++.. -++...   .. ++++.- .+..+|.+ ++..|+..
T Consensus       390 ~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~-lR~Lg~~~  466 (546)
T KOG3783|consen  390 VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVI-LRNLGDSE  466 (546)
T ss_pred             HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHH-HHHcCCHH
Confidence            112221111110 1111111  12333333221  11222222 111111   12 333322 34456666 66699999


Q ss_pred             HHHHHHHHHHhcC---cC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCH
Q psy12713        298 EAIKLIEKAISID---KS----CMFAYETLGTIEVQRGR-LEEAVKCFNKALPLARDE  347 (551)
Q Consensus       298 ~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~  347 (551)
                      .|..+|...++..   ..    .|.+++.+|.++...|. ..++.+++.+|-+-..+.
T Consensus       467 ~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  467 VAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            9999999887431   11    27899999999999999 999999999998866443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.32  E-value=0.012  Score=43.37  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-------c
Q psy12713         64 LLSKAKRAFEHEDYLTAIRHCTEEIEST---SSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVE-------D  127 (551)
Q Consensus        64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------~  127 (551)
                      .+..|...+..|-|++|...++++.+..   |..      -.++.++..++.++..+|+|++++...++++.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            3456777888999999999999998754   222      45678888999999999999988777766664       4


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus       128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      +.+....++.+-+..+..+-..| +.++|+..|+.+-+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~G-r~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLG-RKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence            45555667777788888888888 88888888887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1308|consensus

Probab=97.30  E-value=0.00038  Score=61.40  Aligned_cols=92  Identities=27%  Similarity=0.284  Sum_probs=67.5

Q ss_pred             HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                      -.+..|.+++|++.|..++.++|....+...    .+.+++.++ +...|+..+..++.++|+....|-..|.....+|+
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k----r~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAK----RASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhccc----ccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            3445677777788887777777776544444    777777777 77778887777777777777777777777777788


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy12713        187 YEEALRNLDKTIALNPN  203 (551)
Q Consensus       187 ~~~A~~~~~~~l~~~~~  203 (551)
                      +++|...+..+.+++-+
T Consensus       198 ~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  198 WEEAAHDLALACKLDYD  214 (377)
T ss_pred             hHHHHHHHHHHHhcccc
Confidence            88887777777776543

>KOG1258|consensus

Probab=97.28  E-value=0.2  Score=48.56  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN-PNFHVARAQRHFV  214 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~  214 (551)
                      ...|......-...| +++...-.|++++--.....+.|...+......|+.+-|-..+.++.++. |..+.....-+..
T Consensus       297 l~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            334555566666777 88888888888777666677788888887777788877777777777664 3444444333322


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHH---HHHHHHhcCCCC---HHHHHHHHHH
Q psy12713        215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE---YFNRSIRVDPEN---ASLYVHRAML  288 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~~~~~~~~~---~~~~~~l~~~  288 (551)
                      --      ..|++..|...+++.....|+...+-...+....+.|+.+.+..   .+.....-..+.   ...+...+..
T Consensus       376 ~e------~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  376 EE------SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL  449 (577)
T ss_pred             HH------hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence            22      23778888888888877777777777777777777777777763   222222211111   2234444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713        289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG  328 (551)
Q Consensus       289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  328 (551)
                      .+.-.++.+.|...+.++++..|.+...+..+..+....+
T Consensus       450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            4444677778888888888888777777666666655544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.27  E-value=0.00047  Score=39.18  Aligned_cols=32  Identities=50%  Similarity=0.600  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      .+|..+|.++..+|++++|.++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46677777777777777777777777777764

...

>KOG3824|consensus

Probab=97.23  E-value=0.00054  Score=59.38  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=66.4

Q ss_pred             hhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713        454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  526 (551)
Q Consensus       454 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  526 (551)
                      ..++.....|+.++|...|+.++.+.|.+++++...|......++.-+|-.+|-+|+.++|.|..++.+++..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3444466779999999999999999999999999999999999999999999999999999999999888654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.19  E-value=0.18  Score=46.32  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-----------
Q psy12713        263 GAEEYFNRSIRVDPENASLYVHRAMLMLQARG---NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-----------  328 (551)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------  328 (551)
                      .|...|.++....  ++.+...+|.+|....|   ++.+|..+|.++.+...  ....+.++ ++...|           
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~  247 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA  247 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence            5666666655443  55666667766544222   66777777777776655  66666666 555555           


Q ss_pred             ----CHHHHHHHHHHhcccccC
Q psy12713        329 ----RLEEAVKCFNKALPLARD  346 (551)
Q Consensus       329 ----~~~~A~~~~~~a~~~~~~  346 (551)
                          +...|..++..+....+.
T Consensus       248 ~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         248 AKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             ccCCCHHHHHHHHHHHHHcCCh
Confidence                666777777766655443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.17  E-value=0.058  Score=50.55  Aligned_cols=171  Identities=12%  Similarity=-0.015  Sum_probs=114.3

Q ss_pred             HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC
Q psy12713        163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS  242 (551)
Q Consensus       163 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  242 (551)
                      .+..+|-+.+++..++.++..+|+...|.+.+++++-.........+...      ......|.-        +.--..+
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~------~~~~~~g~~--------rL~~~~~   97 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF------RSNLTSGNC--------RLDYRRP   97 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh------hcccccCcc--------ccCCccc
Confidence            45678999999999999999999999999999998743221111111000      000000000        0000012


Q ss_pred             Cc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-----CC
Q psy12713        243 NV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-----SC  313 (551)
Q Consensus       243 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~  313 (551)
                      .|   ..+.+.....+.+.|-+..|.++.+-.+.++|. ++-........+.-+.++++--++.++.......     .-
T Consensus        98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l  177 (360)
T PF04910_consen   98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL  177 (360)
T ss_pred             cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence            22   235567778889999999999999999999999 6665444444444448888888887777654211     12


Q ss_pred             HHHHHHHHHHHHHhCCH---------------HHHHHHHHHhcccccCH
Q psy12713        314 MFAYETLGTIEVQRGRL---------------EEAVKCFNKALPLARDE  347 (551)
Q Consensus       314 ~~~~~~l~~~~~~~g~~---------------~~A~~~~~~a~~~~~~~  347 (551)
                      |..-+..+.+++..++.               +.|...+.+|+...|.-
T Consensus       178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            45677888888888888               89999999999988864

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.16  E-value=0.36  Score=49.16  Aligned_cols=242  Identities=15%  Similarity=0.066  Sum_probs=156.1

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP  132 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  132 (551)
                      .++..-+..|-.....+++.+|..++.++...-+..      ...+...-..|.+....|++++|++..+.++..-|.+.
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            356667788888899999999999998876654431      33556677788999999999999999999999766543


Q ss_pred             -hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHH--HHHHHHHHHH----h
Q psy12713        133 -KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYE--EALRNLDKTI----A  199 (551)
Q Consensus       133 -~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~--~A~~~~~~~l----~  199 (551)
                       .....++..+|.+..-.| ++++|..+...+.+.....      ..+....+.++..+|+..  +....+...-    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~  571 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE  571 (894)
T ss_pred             chhhhhhhhhhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence             334557788999999999 9999999999888763222      234455678888888433  3333333222    2


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH----hCCCc--HH-HHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD----THSNV--VE-ACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~--~~-~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                      ..|-+.......+.++...      -+.+.+.......++    ..|..  .. ....++.+....|+.++|...+....
T Consensus       572 q~~~~~f~~~~r~~ll~~~------~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~  645 (894)
T COG2909         572 QKPRHEFLVRIRAQLLRAW------LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE  645 (894)
T ss_pred             hcccchhHHHHHHHHHHHH------HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            2333333333233222211      224444444444333    22332  22 23488999999999999999998876


Q ss_pred             hcCCCC--HH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        273 RVDPEN--AS----LYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       273 ~~~~~~--~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      ..-.+.  ..    ........+...+|+..+|.....+..
T Consensus       646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            653222  11    112222333444899999988887743

>KOG0985|consensus

Probab=97.09  E-value=0.46  Score=49.11  Aligned_cols=244  Identities=14%  Similarity=0.061  Sum_probs=118.2

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++.--.....++..+-..+-++++++++-.+..-..+......+..... .-+.....++.++.-..+..+        
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~-------- 1053 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPD-------- 1053 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchh--------
Confidence            34444445556677777778888888866433221112222222222222 223344555555544333221        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKV----------------------DPNVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                        +|.+....+ -+++|...|++.-..                      .-+.+.+|..+|....+.|...+|++.|-++
T Consensus      1054 --ia~iai~~~-LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 --IAEIAIENQ-LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred             --HHHHHhhhh-HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence              444555555 555555555442100                      0123455555555555555555555555443


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713        198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  277 (551)
                           +++..+........+.      |.|++-+.++.-+-+.... +.+-..+...|.+.++..+-.+.+     ..|+
T Consensus      1131 -----dDps~y~eVi~~a~~~------~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN 1193 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRT------GKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPN 1193 (1666)
T ss_pred             -----CCcHHHHHHHHHHHhc------CcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCC
Confidence                 2333333333222222      5555555555444332211 112222333344444443332221     1333


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+. ....|.-++. .|.|+.|.-+|..        ..-|..++..+..+|+|..|+..-++|-.
T Consensus      1194 ~A~-i~~vGdrcf~-~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1194 VAN-IQQVGDRCFE-EKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             chh-HHHHhHHHhh-hhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            332 2344544465 6777777666653        34566778888888888888888777643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.08  E-value=0.058  Score=49.95  Aligned_cols=120  Identities=13%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCCHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKL  302 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~  302 (551)
                      .-.+.-+..+++|++.+|++...+..+-....+..+.++....+++++..+|+++..|...-......  .-.+......
T Consensus        45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            44567778889999999998888888888888888888888899999999999888887665542221  2246677777


Q ss_pred             HHHHHhcCcC------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        303 IEKAISIDKS------------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       303 ~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      |.++++.-..                  -..++..+.......|-.+.|+..++-.++.+
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            7777643110                  13456677788889999999999999999875

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.05  E-value=0.042  Score=51.49  Aligned_cols=106  Identities=10%  Similarity=-0.059  Sum_probs=70.3

Q ss_pred             HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--------------CC------------CCchhHHHHHH
Q psy12713         87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--------------TS------------VDPKIKVNAHI  140 (551)
Q Consensus        87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~------------~~~~~~~~~~~  140 (551)
                      .++.+|-   +++++..++.++..+|+...|.+.+++++-.              ++            .|. ....+++
T Consensus        32 ll~~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal~  107 (360)
T PF04910_consen   32 LLQKNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLALF  107 (360)
T ss_pred             HHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHHH
Confidence            4456665   9999999999999999999999999988532              11            111 1234556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ChhH-HHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPN-VADS-YYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      .....+.+.| -+..|.++.+-.+.++|. ++-. .+.+-....+.++++--+..++..
T Consensus       108 r~i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen  108 RYIQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             HHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence            6666777777 777777777777777777 5433 333334444556665555555543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.04  E-value=0.26  Score=45.33  Aligned_cols=190  Identities=15%  Similarity=0.138  Sum_probs=123.7

Q ss_pred             HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--
Q psy12713        109 IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS---DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL--  183 (551)
Q Consensus       109 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--  183 (551)
                      ...+++..|...+..+-....      ..+...++.+|....+   +..+|..+|..+.  ...++.+.+.+|.+|..  
T Consensus        52 ~~~~~~~~a~~~~~~a~~~~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~  123 (292)
T COG0790          52 AYPPDYAKALKSYEKAAELGD------AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR  123 (292)
T ss_pred             cccccHHHHHHHHHHhhhcCC------hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence            345667777777777665221      1344556666665432   5777888888443  45567778888888876  


Q ss_pred             --hCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--
Q psy12713        184 --FGQYEEALRNLDKTIALNPNF-HVARAQRHFVVHKMI-VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD--  257 (551)
Q Consensus       184 --~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--  257 (551)
                        ..+..+|..+|.++.+..-.. ......++..+.... ...-..+...|...|.++....  ++.+...+|.+|..  
T Consensus       124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~  201 (292)
T COG0790         124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL  201 (292)
T ss_pred             CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence              448888888888888764433 233556665554321 0111224457888888877665  67788888887765  


Q ss_pred             --ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCcC
Q psy12713        258 --QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---------------NVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       258 --~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~A~~~~~~~~~~~~~  312 (551)
                        ..++.+|..+|.++.+...  ....+.++ +++. .|               +...|...+..+....+.
T Consensus       202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             CCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence              3488899999999988766  77777788 4344 44               666777777766655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.01  E-value=0.25  Score=44.79  Aligned_cols=226  Identities=10%  Similarity=0.037  Sum_probs=135.1

Q ss_pred             HHHhCCchHHHHHHHHHhhcC----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CC------
Q psy12713        108 YIFTSQSTKAIEDLTQLVEDT----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV----DP---NV------  170 (551)
Q Consensus       108 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~---~~------  170 (551)
                      .+..|+++.|..++.++-...    |+........+++.|......+.+++.|...++++.+.    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999987654    44444445566777776666654799999999999877    21   11      


Q ss_pred             -hhHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC-Cc-
Q psy12713        171 -ADSYYQRGQIYCLFGQYE---EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS-NV-  244 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~-  244 (551)
                       ..++..++.+|...+.++   +|....+.+-...|+.+..+...-.+...      .++.+.+.+.+.+++...+ .. 
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~------~~~~~~~~~~L~~mi~~~~~~e~  156 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK------SFDEEEYEEILMRMIRSVDHSES  156 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc------cCChhHHHHHHHHHHHhcccccc
Confidence             346778889998888765   45555566666677766666433322222      5888999999999988654 22 


Q ss_pred             -HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHH---HHHHhc-CC------HHHHHHHHHHHHhc--
Q psy12713        245 -VEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAM---LMLQAR-GN------VDEAIKLIEKAISI--  309 (551)
Q Consensus       245 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~---~~~~~~-~~------~~~A~~~~~~~~~~--  309 (551)
                       .........-+.. .....|...+...+..  .|.... +.....   +++... ++      .+....++..+.+.  
T Consensus       157 ~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~  234 (278)
T PF08631_consen  157 NFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG  234 (278)
T ss_pred             hHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence             2222222222222 3445677777666543  233221 322221   212211 22      22222333322211  


Q ss_pred             CcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        310 DKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       310 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      .|-.       ...+++.|.-.++.++|++|..+|+-++
T Consensus       235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            1222       2346678899999999999999999765

It is also involved in sporulation [].

>smart00028 TPR Tetratricopeptide repeats

Probab=96.97  E-value=0.0011  Score=37.06  Aligned_cols=33  Identities=36%  Similarity=0.743  Sum_probs=30.3

Q ss_pred             HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713        484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  516 (551)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  516 (551)
                      .+++.+|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.94  E-value=0.004  Score=44.74  Aligned_cols=67  Identities=22%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             HHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch--HHHHHHHHHHHHHhhhhh
Q psy12713        468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVWTSTLAEL  534 (551)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~  534 (551)
                      .+..+++.++.+|++.++.+.+|..+...|++++|++.+-.++..+|++  ..++..+-.++...|...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4567888999999999999999999999999999999999999999876  778888888888777643

>KOG2041|consensus

Probab=96.91  E-value=0.27  Score=48.42  Aligned_cols=240  Identities=14%  Similarity=0.051  Sum_probs=138.4

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK  133 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  133 (551)
                      +.+..|-..|...+.+-.++.|...|-+.-....-.     .....--...+.+-.--|++++|.+.|-.+-..+     
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-----  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-----  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence            455666666777776666766666665532211100     0000001223444444567777777665432211     


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  211 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  211 (551)
                      .       -...+...| ++-...+.++..-.-..  ....++..+|..+..+..|++|.++|...-..        -+.
T Consensus       765 L-------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~  828 (1189)
T KOG2041|consen  765 L-------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQ  828 (1189)
T ss_pred             h-------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhH
Confidence            1       122445566 66666555543222111  12568899999999999999999999875422        234


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ  291 (551)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  291 (551)
                      ..+++++      ..+++-.    .+...-|++.+.+-.+|..+...|.-++|.+.|-+.-  .|   .+  .+..+ ..
T Consensus       829 ~ecly~l------e~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---ka--Av~tC-v~  890 (1189)
T KOG2041|consen  829 IECLYRL------ELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---KA--AVHTC-VE  890 (1189)
T ss_pred             HHHHHHH------HhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---HH--HHHHH-HH
Confidence            4555655      5555433    3344568888888999999999999999999886532  12   11  11222 44


Q ss_pred             hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                       .+++.+|.+..++.-  -|.-.......+.-+...++..+|++..+++
T Consensus       891 -LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  891 -LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             -HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence             778888888766531  2222222333344455667778888877776

>KOG1464|consensus

Probab=96.85  E-value=0.27  Score=42.51  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=53.1

Q ss_pred             cccccCCCCCCcch--HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy12713         48 GVELTNGDTNESHE--LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQL  124 (551)
Q Consensus        48 ~~~l~~~~~~~~~~--~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  124 (551)
                      +.+.......++++  +..+..+.. +...+.++|+.-|+++++..+.. ..-..++-.+..+++++|++++-...|.+.
T Consensus        13 g~EYsdds~sEpdVDlENQYYnsK~-l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql   91 (440)
T KOG1464|consen   13 GFEYSDDSNSEPDVDLENQYYNSKG-LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL   91 (440)
T ss_pred             CceeccccCCCCCcchHhhhhcccc-ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            34444444434333  333333332 23447889999999999988764 444567778888899999999999998888


Q ss_pred             hhc
Q psy12713        125 VED  127 (551)
Q Consensus       125 ~~~  127 (551)
                      +..
T Consensus        92 LTY   94 (440)
T KOG1464|consen   92 LTY   94 (440)
T ss_pred             HHH
Confidence            763

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.81  E-value=0.022  Score=41.88  Aligned_cols=106  Identities=16%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      +|..++..||+-+|+++.+..+...+++...+..+...|.++..+.            ...  +|+.....         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~t--en~d~k~~---------   58 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKT--ENPDVKFR---------   58 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------Hhc--cCchHHHH---------
Confidence            4666777777777777777777776652222244455555544322            111  12222111         


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                           -.-.+++.+.++..+.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus        59 -----yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   59 -----YLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             -----HHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                 2233566666677777777777777776666666666666666666654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.79  E-value=0.11  Score=48.24  Aligned_cols=165  Identities=7%  Similarity=-0.033  Sum_probs=102.7

Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC------------chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713         82 RHCTEEIESTSSNHTKALARLLRATVYIFTSQ------------STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      .-+++.+..+|.   +.++|..+....-..-.            .+.-+.++++|++.+|++......    +-.+....
T Consensus         6 ~el~~~v~~~P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~----~l~~~~~~   78 (321)
T PF08424_consen    6 AELNRRVRENPH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLG----YLEEGEKV   78 (321)
T ss_pred             HHHHHHHHhCcc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHh
Confidence            457778889998   88999888876544422            345677788888888877554332    44445566


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      . +.++..+-+++++..+|++...|...-.....   .-.++.....|.+++..-.......            ......
T Consensus        79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~------------~~~~~~  145 (321)
T PF08424_consen   79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR------------MTSHPD  145 (321)
T ss_pred             C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc------------cccccc
Confidence            6 77777888888888888888777665544433   2356677777777765322110000            000000


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP  276 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  276 (551)
                      ....          ......++..+.....+.|..+.|+..++-.++.+-
T Consensus       146 ~~~~----------e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  146 LPEL----------EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             hhhH----------HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            0000          001134566777888888999999999998888753

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.71  E-value=0.0027  Score=36.48  Aligned_cols=28  Identities=39%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        316 AYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      ++..+|.+|...|++++|+++|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567788888888888888888885543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.69  E-value=0.047  Score=45.33  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCh----h
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVA----D  172 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~  172 (551)
                      .++..+|..|.+.|+.++|++.|.++..... .+......++.+..+.+..+ ++.....++.++-..  .+.+.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4444455555555555555555554443221 22223344444444444444 444444444444322  11221    1


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      ....-|..++..++|..|...|-.+.
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccC
Confidence            22233444444555555555554443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10941 hypothetical protein; Provisional

Probab=96.68  E-value=0.0069  Score=53.67  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      ...+...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.-...+..
T Consensus       188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            3347888999999999999999999999999999999999999999999999999999999988776655543

>KOG0890|consensus

Probab=96.65  E-value=1.8  Score=49.41  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=95.5

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      ..|..-++.|.|..|+-++++- ...+.. ......+..+-.+|...++++.-.-....-.. .|        .+...-.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~--------sl~~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP--------SLYQQIL 1457 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc--------cHHHHHH
Confidence            6788889999999999999985 222221 22334445555589999999887766654111 22        2233555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      .....| ++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+...+
T Consensus      1458 ~~e~~g-~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1458 EHEASG-NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred             HHHhhc-cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence            667788 9999999999999999998877777777778888888888877766665555555444433

>PRK10941 hypothetical protein; Provisional

Probab=96.62  E-value=0.025  Score=50.19  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713        135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  210 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  210 (551)
                      ....+.++-.++...+ +++.|+.+.+.++...|+++.-+..+|.+|.++|.+..|...++..++.+|+++.+...
T Consensus       180 l~Rml~nLK~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        180 IRKLLDTLKAALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            3445556677778888 88888888888888888888888888888888888888888888888888887776543

>KOG2396|consensus

Probab=96.62  E-value=0.052  Score=51.04  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC-HHHHHHH
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEY  267 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~  267 (551)
                      .-...|+.++...+.+...|.......-+.      +.+.+--..|.+++..+|++++.|..-|...+..+. .+.|...
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal  162 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKK------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL  162 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence            344556666666666666665544333332      445566666666666666666666666655555443 6666666


Q ss_pred             HHHHHhcCCCCHHHHHH
Q psy12713        268 FNRSIRVDPENASLYVH  284 (551)
Q Consensus       268 ~~~~~~~~~~~~~~~~~  284 (551)
                      |.++++.+|+++..|..
T Consensus       163 flrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  163 FLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHHHhhcCCCChHHHHH
Confidence            66666666666665543

>KOG1464|consensus

Probab=96.61  E-value=0.32  Score=42.02  Aligned_cols=55  Identities=5%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        110 FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus       110 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      ...+.++|+.-|++++++.+...++-..++-.+..+.+.++ ++++-...|.+.+.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-NYKEMMERYKQLLT   93 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence            34477778888888888877777777777777777888887 77777777766553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.57  E-value=0.29  Score=39.15  Aligned_cols=82  Identities=24%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      +.+++.....-...+ +.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.....++.|+
T Consensus        10 v~gLie~~~~al~~~-~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen   10 VGGLIEVLSVALRLG-DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            456666777777777 7777777777777777888877777788888888888888888887777777776666666666


Q ss_pred             HHh
Q psy12713        216 HKM  218 (551)
Q Consensus       216 ~~~  218 (551)
                      +..
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            554

>KOG0890|consensus

Probab=96.52  E-value=2.2  Score=48.83  Aligned_cols=81  Identities=14%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713        261 FDGAEEYFNRSIR---VD----PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       261 ~~~A~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                      ..+-+-.+++++-   .+    ......|...|.+ .+..|+++.|...+-.+.+..  -+.+....|......|+-..|
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri-aR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI-ARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH-HHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHH
Confidence            4444545555432   22    3346788889988 555899999999998887766  478899999999999999999


Q ss_pred             HHHHHHhcccc
Q psy12713        334 VKCFNKALPLA  344 (551)
Q Consensus       334 ~~~~~~a~~~~  344 (551)
                      +..+++.++.+
T Consensus      1722 l~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1722 LSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.47  E-value=0.081  Score=42.16  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      .+..+..+-...++.+++...+.-.--+.|..+..-..-|.+++. .|++.+|+.+++.+....|..+.+--.++.|+..
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            344445555566666777666666666677777766666766666 6777777777777666666666666667777766


Q ss_pred             hCCH
Q psy12713        327 RGRL  330 (551)
Q Consensus       327 ~g~~  330 (551)
                      .|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.45  E-value=0.0051  Score=51.25  Aligned_cols=59  Identities=19%  Similarity=0.318  Sum_probs=55.1

Q ss_pred             hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH
Q psy12713        460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV  518 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  518 (551)
                      .+.++.+.|.+.|.+++.+-|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34588999999999999999999999999999999999999999999999999998743

>KOG2396|consensus

Probab=96.32  E-value=0.16  Score=47.94  Aligned_cols=98  Identities=10%  Similarity=0.171  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      -...-...|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-+.-.+...-+.+.|...+.+
T Consensus        86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            34566778889999999999999988888888888999999999999999999999988887777744458889999999


Q ss_pred             HHhcCcCCHHHHHHHHHH
Q psy12713        306 AISIDKSCMFAYETLGTI  323 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~  323 (551)
                      +++.+|+++..|...-.+
T Consensus       166 gLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HhhcCCCChHHHHHHHHH
Confidence            999999998877655444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.22  E-value=1  Score=47.80  Aligned_cols=223  Identities=11%  Similarity=0.085  Sum_probs=126.9

Q ss_pred             HHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh----cC--CHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713        105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA----AS--DFTKAFADLDEAEKVDPNVADSYYQRG  178 (551)
Q Consensus       105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~--~~~~A~~~~~~~~~~~~~~~~~~~~la  178 (551)
                      ..++.....|+.|+..|+++....|+..+- ..+.+..|.....+    |+  .+++|+..|++.- -.|.-|--|...|
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG-YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccc-hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            445666677888888888888777765443 45666677666543    21  4677777777643 3566778888999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713        179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD  257 (551)
Q Consensus       179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  257 (551)
                      .+|.++|++++-++++.-+++..|.++..-...-.+.+++ ...  ..+-..|....--++...|.....-..--..-.-
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESL--YKHRREALVFMLLALWIAPEKISSREEEKFLEIL  637 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            9999999999999999999999999887655544444443 000  0222344455555555556543221110000000


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV  334 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  334 (551)
                      .++++ +.-.+    .+++.....   ...+-.. +- .|..---.+.++++.+..|-  .+..+.-.+....|+++-+.
T Consensus       638 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  708 (932)
T PRK13184        638 YHKQQ-ATLFC----QLDKTPLQFRSSKMELFLS-FW-SGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFS  708 (932)
T ss_pred             Hhhcc-CCcee----eccCchhhhhhhhHHHHHH-HH-hcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHH
Confidence            11111 00000    112211111   1122222 21 46665566677777665543  56666666777888887666


Q ss_pred             HHHHHh
Q psy12713        335 KCFNKA  340 (551)
Q Consensus       335 ~~~~~a  340 (551)
                      ......
T Consensus       709 ~~~~~~  714 (932)
T PRK13184        709 QFSDIL  714 (932)
T ss_pred             HHHHHH
Confidence            555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.20  E-value=0.16  Score=37.51  Aligned_cols=28  Identities=11%  Similarity=0.017  Sum_probs=15.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVA  171 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~  171 (551)
                      +..++..| ++-+|++..+..+..++++.
T Consensus         3 A~~~~~rG-nhiKAL~iied~i~~h~~~~   30 (111)
T PF04781_consen    3 AKDYFARG-NHIKALEIIEDLISRHGEDE   30 (111)
T ss_pred             HHHHHHcc-CHHHHHHHHHHHHHHccCCC
Confidence            34455555 55555555555555555444

>KOG3824|consensus

Probab=96.17  E-value=0.023  Score=49.65  Aligned_cols=72  Identities=19%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF  213 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~  213 (551)
                      ..+.-....| +.++|...|+.++.+.|++++++..+|.+....++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus       121 ~~A~~~~~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3455556778 89999999999999999999999999999998899999999999999999999888876653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.13  E-value=0.04  Score=34.69  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHH
Q psy12713        316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH  352 (551)
Q Consensus       316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  352 (551)
                      .++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3455566666666666666666666666666655433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.07  E-value=0.09  Score=37.79  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713        231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (551)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344455555555555555555555555555555555555555554443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.05  E-value=1.4  Score=41.70  Aligned_cols=135  Identities=9%  Similarity=0.118  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      ..-.--...+..||...|-.....++...|.   .+......+.+...+|+|+.+...+..+-..-....    .+...+
T Consensus       291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~  363 (831)
T PRK15180        291 EITLSITKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----STLRCR  363 (831)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHH
Confidence            3333445567889999999999999999998   777788889999999999999988766554322221    133345


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      -.....+| +++.|.....-.+...-.++++...-+......|-++++...+++.+.++|...
T Consensus       364 ~r~~~~l~-r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        364 LRSLHGLA-RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHhhhchh-hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            66777889 999999999998888777888877777777888999999999999999987643

>KOG3364|consensus

Probab=96.04  E-value=0.18  Score=38.46  Aligned_cols=76  Identities=16%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHhC---CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713         97 KALARLLRATVYIFTS---QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADS  173 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  173 (551)
                      .....+.++.++....   +..+.+.+++..++.  .++.-.....+.++..+.+.+ +|++++.+.+..++..|++..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHHH
Confidence            4566677777776554   344567777777751  222223445566777777777 7777777777777777777665


Q ss_pred             HH
Q psy12713        174 YY  175 (551)
Q Consensus       174 ~~  175 (551)
                      ..
T Consensus       108 ~~  109 (149)
T KOG3364|consen  108 LE  109 (149)
T ss_pred             HH
Confidence            43

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.01  E-value=1.4  Score=41.40  Aligned_cols=243  Identities=13%  Similarity=0.060  Sum_probs=143.7

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713         83 HCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE  162 (551)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~  162 (551)
                      .+++++...|-   .+++|+.........++-+.|+...++++...|.   ..    +.++.+|...+ +-+....+|++
T Consensus       290 ~~~q~~~y~~~---~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~----~~lse~yel~n-d~e~v~~~fdk  358 (660)
T COG5107         290 IHNQILDYFYY---AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LT----MFLSEYYELVN-DEEAVYGCFDK  358 (660)
T ss_pred             HHHHHHHHhhh---hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hh----eeHHHHHhhcc-cHHHHhhhHHH
Confidence            45666666665   7788888777778888888888888888777665   22    23666776666 66666666766


Q ss_pred             HHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713        163 AEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD  239 (551)
Q Consensus       163 ~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  239 (551)
                      ++..-.    --+..+..-..   -|+++...+.+-+-..   ....++.-.-....      +..-.+.|...|.++-+
T Consensus       359 ~~q~L~----r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~------r~~Gl~aaR~~F~k~rk  425 (660)
T COG5107         359 CTQDLK----RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVL------RKRGLEAARKLFIKLRK  425 (660)
T ss_pred             HHHHHH----HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHH------HHhhHHHHHHHHHHHhc
Confidence            653200    00000000000   1222111111111110   11111111111111      22556777777777765


Q ss_pred             hCCCcHHHHHHHHHH-HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHH
Q psy12713        240 THSNVVEACTLFAQV-LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFA  316 (551)
Q Consensus       240 ~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~  316 (551)
                      ..-...+++..-|.+ +...|++.-|-..|+-.+...|+++......-..++. .++-..|...|++++..-...  ...
T Consensus       426 ~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~i  504 (660)
T COG5107         426 EGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRI  504 (660)
T ss_pred             cCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence            542333444333332 4567899999999999999888887655444444344 888899999999877553333  456


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      |..+-..-..-|+...+...=++...+.|....+
T Consensus       505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~  538 (660)
T COG5107         505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENLI  538 (660)
T ss_pred             HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence            6677777777888888888888888888876443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.00  E-value=0.093  Score=49.07  Aligned_cols=127  Identities=19%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      +..| +.-.|-+-...++...|..|......+.+....|+|+.+...+..+-..-.....+..-+-      ......|+
T Consensus       300 ~~~g-d~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~------r~~~~l~r  372 (831)
T PRK15180        300 LADG-DIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL------RSLHGLAR  372 (831)
T ss_pred             hhcc-CHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH------Hhhhchhh
Confidence            4456 8888888888899999999999999999999999999999887665544333333332233      23334499


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      +++|.....-++...-.++++...-+......|-++++...+++.+.++|....
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            999999999998888888888777777778889999999999999999876543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.99  E-value=1.4  Score=41.36  Aligned_cols=134  Identities=5%  Similarity=-0.033  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      .++..||.+...+-.+|.+++-.+.+++.....|-   ...+|...-..-...+++......|.+++...-+ .+.+.  
T Consensus        40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~---~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~--  113 (660)
T COG5107          40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI---MEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM--  113 (660)
T ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc---ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH--
Confidence            47889999999999999999999999999888875   6666666555555667888888888888875432 11111  


Q ss_pred             HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhc
Q psy12713        139 HIKRAVVHLHAAS---------DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---------FGQYEEALRNLDKTIAL  200 (551)
Q Consensus       139 ~~~la~~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~  200 (551)
                         +-.-|.+.-+         ..-+|.+..-.+.-.+|.....|...+.....         +.+.+.-...|.+++..
T Consensus       114 ---lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t  190 (660)
T COG5107         114 ---LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT  190 (660)
T ss_pred             ---HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence               1112222210         12334443333444567777777776665443         33455666677777765


Q ss_pred             C
Q psy12713        201 N  201 (551)
Q Consensus       201 ~  201 (551)
                      -
T Consensus       191 P  191 (660)
T COG5107         191 P  191 (660)
T ss_pred             c
Confidence            3

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.97  E-value=0.061  Score=36.60  Aligned_cols=67  Identities=7%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE  126 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  126 (551)
                      .+...+..|..++...+.++|+..++++++..++.+....++-.+..+|...|+|.+.+.+...-+.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888888888999999998888877444555666666777888888887777554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.92  E-value=0.61  Score=36.62  Aligned_cols=82  Identities=22%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ..++......-...+ +.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++....-.+..+.....++.|+
T Consensus        10 v~gLi~~~~~aL~~~-d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL   88 (153)
T TIGR02561        10 LGGLIEVLMYALRSA-DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL   88 (153)
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence            344555556666677 8888888888888888888888888888888888888888888888877777676666666666


Q ss_pred             HHh
Q psy12713        216 HKM  218 (551)
Q Consensus       216 ~~~  218 (551)
                      +..
T Consensus        89 ~al   91 (153)
T TIGR02561        89 NAK   91 (153)
T ss_pred             Hhc
Confidence            555

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.85  E-value=0.021  Score=31.50  Aligned_cols=30  Identities=37%  Similarity=0.780  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      ++..+|.++...|++++|+..++++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            445555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364|consensus

Probab=95.76  E-value=0.046  Score=41.56  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             cChhHHHHhhHHhhc-cCCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        463 SDFTKAFADLDEAEK-VDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       463 ~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      .+..+.+.+++..++ -+|. .-+..|.++..+.+.|+|++|+.+.+..++..|+|..+....-.+..+
T Consensus        49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~  117 (149)
T KOG3364|consen   49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDK  117 (149)
T ss_pred             HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            568889999999997 5554 567889999999999999999999999999999999998777666654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.63  E-value=0.32  Score=41.75  Aligned_cols=90  Identities=22%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             CchHHHHHHHHHhhc---CCCCchhHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCC--CC----hhHHHH
Q psy12713        113 QSTKAIEDLTQLVED---TSVDPKIKVNAHIKRAVVHLHAASDF-------TKAFADLDEAEKVDP--NV----ADSYYQ  176 (551)
Q Consensus       113 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~-------~~A~~~~~~~~~~~~--~~----~~~~~~  176 (551)
                      .+++|++.|.-|+-.   ....+...+..++.+|.+|...| +.       ..|+..|.+++....  ..    ..+.+.
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~-~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLG-DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            444555554444331   12223334556677788887777 64       445555555554432  22    467888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                      +|.+..+.|++++|..+|.+++.....
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999876443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.4  Score=46.42  Aligned_cols=130  Identities=18%  Similarity=0.025  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF  268 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  268 (551)
                      -++..+...+.+++.++......-    ....+...++...+...+...+..+|.+..+..+++......|....+...+
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~----lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAF----LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHH----HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            355555555555666655443331    1133444566666666666677777777777777666666666555555444


Q ss_pred             HH-HHhcCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713        269 NR-SIRVDPENASLYVHR------AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  323 (551)
Q Consensus       269 ~~-~~~~~~~~~~~~~~l------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  323 (551)
                      .. +....|++......+      +.. +...|+..++...++++....|.++.+...+...
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRY-LKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            44 556666666654444      443 3336666666666666666666665555444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.51  E-value=0.59  Score=38.87  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      .++..+|..|.+.| +.+.|++.|.++.......   .+.++.+..+....+++.....+..++-..
T Consensus        37 ~~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34455555555555 5555555555554433222   344455555555555555555555555433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.45  E-value=0.12  Score=37.72  Aligned_cols=62  Identities=16%  Similarity=0.098  Sum_probs=39.9

Q ss_pred             HHHHhhhcHHHHHHHHHHHhhcCCCc---h---hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713         69 KRAFEHEDYLTAIRHCTEEIESTSSN---H---TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV  130 (551)
Q Consensus        69 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  130 (551)
                      ....+.|||.+|++.+.+.++.....   .   ....++..+|.++...|++++|+..+++++++...
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            34566778888877777666554332   1   23456666777777777777777777777776443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.31  E-value=0.39  Score=37.64  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL  330 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  330 (551)
                      ..++.+++...+...--+.|+.+..-..-|.+++. .|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            35555555555555555566665555555555555 56666666666665555555555555555555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2422|consensus

Probab=95.24  E-value=2.4  Score=41.25  Aligned_cols=165  Identities=13%  Similarity=0.076  Sum_probs=107.0

Q ss_pred             hhcHHHHHHHHHHHhhcCCCc---------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----C-----------
Q psy12713         74 HEDYLTAIRHCTEEIESTSSN---------HTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----T-----------  128 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~-----------  128 (551)
                      ...|++|...|.-+....+.+         |++.+.+..++.+...+|+.+-|....++++=.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            456788888888776655433         789999999999999999999888877776531     1           


Q ss_pred             -----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHH-HHhCCHHHHHHHHHHH----
Q psy12713        129 -----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN-VADSYYQRGQIY-CLFGQYEEALRNLDKT----  197 (551)
Q Consensus       129 -----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~~----  197 (551)
                           |.|.. ...+++..-..+.+.| -+..|.++++-.++++|. +|.+...+..+| .+..+|.=-++.++..    
T Consensus       331 L~y~~~eNR~-FyL~l~r~m~~l~~RG-C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n  408 (665)
T KOG2422|consen  331 LPYIYPENRQ-FYLALFRYMQSLAQRG-CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN  408 (665)
T ss_pred             CcccchhhHH-HHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence                 22222 2335555666777888 999999999999999998 776655555544 4455666555555544    


Q ss_pred             -HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713        198 -IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV  244 (551)
Q Consensus       198 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  244 (551)
                       +..-|+...   .++.+++.... .....-+.|...+.+|+...|..
T Consensus       409 ~l~~~PN~~y---S~AlA~f~l~~-~~~~~rqsa~~~l~qAl~~~P~v  452 (665)
T KOG2422|consen  409 KLSQLPNFGY---SLALARFFLRK-NEEDDRQSALNALLQALKHHPLV  452 (665)
T ss_pred             cHhhcCCchH---HHHHHHHHHhc-CChhhHHHHHHHHHHHHHhCcHH
Confidence             233444332   23332222100 01114567888888888887753

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=1.6  Score=42.48  Aligned_cols=133  Identities=17%  Similarity=0.040  Sum_probs=67.4

Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713        117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK  196 (551)
Q Consensus       117 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  196 (551)
                      ++..+...+.+++.++...... + +...+...+ ....+.-.+..++..+|++..+..+++......|....+...+..
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~-~-lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~  126 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAA-F-LSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE  126 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHH-H-HHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4444444444555555543221 1 445555555 555666666666666666666666666665555555444444433


Q ss_pred             -HHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        197 -TIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       197 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                       +....|++......+..++-........|+..++....+++....|.++.+...+.
T Consensus       127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~  183 (620)
T COG3914         127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM  183 (620)
T ss_pred             HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence             55555655554444422222112222235555555566666666665554443333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.14  E-value=0.033  Score=33.20  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  512 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  512 (551)
                      ..++.++|.+|...|++++|..++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457889999999999999999999999976

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.00  E-value=0.6  Score=40.14  Aligned_cols=105  Identities=10%  Similarity=0.001  Sum_probs=70.4

Q ss_pred             hhcHHHHHHHHHHHhhcC----CCchhHHHHHHHHHHHHHHhCCchH-------HHHHHHHHhhcC--CCCchhHHHHHH
Q psy12713         74 HEDYLTAIRHCTEEIEST----SSNHTKALARLLRATVYIFTSQSTK-------AIEDLTQLVEDT--SVDPKIKVNAHI  140 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~la~~~~~~g~~~~-------A~~~~~~~~~~~--~~~~~~~~~~~~  140 (551)
                      ...+++|+..|.-++-..    ......+..+..+|.+|...|+.+.       |...|.+++...  |..........+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            446777877777665321    1112457888899999999998554       555566655543  223333355778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHH
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVA-DSYYQRGQ  179 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~  179 (551)
                      .+|.+..+.| ++++|...|.+++.....+. .....+|.
T Consensus       170 LigeL~rrlg-~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  170 LIGELNRRLG-NYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            8999999999 99999999999997644332 24444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.98  E-value=0.037  Score=31.93  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=28.0

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcC
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALN  513 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  513 (551)
                      ++++..+|.+-...++|++|+..|++++++.
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.97  E-value=0.061  Score=30.66  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHH--HHHHhhcCCch
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRN--LDKTIALNPNF  516 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~  516 (551)
                      ++.++.+|..+..+|++++|+..  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            35678899999999999999999  55888888765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.97  E-value=0.069  Score=46.92  Aligned_cols=85  Identities=11%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713        235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM  314 (551)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  314 (551)
                      .++-...|+++..|...+......|-+.+--..|.+++..+|.+.+.|..-+..-+...++.+.+...|.+++..+|++|
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            33444556667777777766666777777777777777777777776655332222236777777777777777777776


Q ss_pred             HHHHH
Q psy12713        315 FAYET  319 (551)
Q Consensus       315 ~~~~~  319 (551)
                      ..|..
T Consensus       177 ~iw~e  181 (435)
T COG5191         177 RIWIE  181 (435)
T ss_pred             hHHHH
Confidence            66553

>KOG1310|consensus

Probab=94.94  E-value=0.15  Score=48.40  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=81.7

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh---CCchHHHHHHHHHhhcCCCCchhH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT---SQSTKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      ..++..+..|...+..+....|+..|.++++..|.   ....+...+.++++.   |+.-.|+.....++.++|..    
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~----  444 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI----  444 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH----
Confidence            46677778888888888889999999999999998   778888888877754   45566777777777777654    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV  170 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~  170 (551)
                      ..+++.++.++..++ ++.+|+++...+....|.+
T Consensus       445 ~kah~~la~aL~el~-r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  445 QKAHFRLARALNELT-RYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHHHHHHHHHh-hHHHhhhhHHHHhhcCchh
Confidence            557778888888888 8888888888777777744

>KOG1839|consensus

Probab=94.89  E-value=0.6  Score=49.85  Aligned_cols=138  Identities=17%  Similarity=0.082  Sum_probs=104.6

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHH------HHHH-HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIR------HCTE-EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--  129 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~-~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--  129 (551)
                      ......+..|......|.+.+|.+      .+.. .-...|+   ....+..++..+...|++++|+..-.++.-+..  
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~---~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE---VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh---HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence            356778889999999999998888      5553 3344566   889999999999999999999999888765422  


Q ss_pred             --CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        130 --VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       130 --~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                        .+.......+.+++...+..+ +...|...+.++...        .|.-.....+++.++...++++.|+.+.+.+..
T Consensus      1007 ~g~ds~~t~~~y~nlal~~f~~~-~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVK-NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred             ccCCCHHHHHHhhHHHHHHHhcc-CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              222333556777888888888 888888888887654        344455667788888888888888888888877


Q ss_pred             c
Q psy12713        200 L  200 (551)
Q Consensus       200 ~  200 (551)
                      .
T Consensus      1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred             H
Confidence            3

>KOG2422|consensus

Probab=94.89  E-value=1.6  Score=42.37  Aligned_cols=47  Identities=26%  Similarity=0.316  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHHHHhc------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        152 DFTKAFADLDEAEKV------------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      .|++|...|.-+...            .|-+.+.+..++.++..+|+.+.|....++++
T Consensus       253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            677888888777654            35567889999999999999998888887776

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.83  E-value=4  Score=39.24  Aligned_cols=85  Identities=9%  Similarity=-0.062  Sum_probs=51.0

Q ss_pred             HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                      ++.....+.-....+.+++....+     -.+++.++.+|...|  .++-...+++.++.+-++...-..++..|.. ++
T Consensus        75 ~f~~n~k~~~veh~c~~~l~~~e~-----kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik  146 (711)
T COG1747          75 IFGDNHKNQIVEHLCTRVLEYGES-----KMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGRELADKYEK-IK  146 (711)
T ss_pred             HhccchHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hc
Confidence            333333444445555555554432     235566777776665  4555666677777766666666666666655 67


Q ss_pred             HHHHHHHHHHHHh
Q psy12713        187 YEEALRNLDKTIA  199 (551)
Q Consensus       187 ~~~A~~~~~~~l~  199 (551)
                      ...+..+|.+++.
T Consensus       147 ~sk~a~~f~Ka~y  159 (711)
T COG1747         147 KSKAAEFFGKALY  159 (711)
T ss_pred             hhhHHHHHHHHHH
Confidence            7777777777664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.83  E-value=0.89  Score=33.94  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCcCCH-
Q psy12713        255 LVDQEDFDGAEEYFNRSIRVDPEN------------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS-------IDKSCM-  314 (551)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~-  314 (551)
                      .+..|-|++|...++++.+....-            .-++-.++..+.. +|+|++++..-.+++.       ++.+.. 
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccch
Confidence            344566777777777766553221            2234455555444 7777776665555553       233332 


Q ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        315 ---FAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       315 ---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                         .+.+..+..+...|+.++|+..|+.+-+.
T Consensus        98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               34456778888889999999999887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.79  E-value=1.8  Score=35.02  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhhcCCChh
Q psy12713        152 DFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF----HVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      ..++|+..|...-+..-..  .-+....+.+..+.|+...|+..|..+-.-.|-.    ..+...-+      .++...|
T Consensus        73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa------~lLvD~g  146 (221)
T COG4649          73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA------YLLVDNG  146 (221)
T ss_pred             CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH------HHHhccc
Confidence            5555555555544433222  2344455556666666666666666555433221    11222223      2222335


Q ss_pred             HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       226 ~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      .|+......+.+- ..+|-...+.-.+|..-.+.|++.+|...|.+... +...+....+.+.+
T Consensus       147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            5555554444322 12233345556667777777777777777776655 44444444455544

>KOG1310|consensus

Probab=94.66  E-value=0.15  Score=48.41  Aligned_cols=92  Identities=21%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK  335 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  335 (551)
                      .+....|+..|.+++...|.....+.+.+.+++++  .|+.-.|+.....+++++|....+++.|+.++...+++.+|+.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            34556677777777777777777777777665542  3556667777777777777777777777777777777777777


Q ss_pred             HHHHhcccccCHHH
Q psy12713        336 CFNKALPLARDEAE  349 (551)
Q Consensus       336 ~~~~a~~~~~~~~~  349 (551)
                      ....+....|.+..
T Consensus       467 ~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  467 CHWALQMSFPTDVA  480 (758)
T ss_pred             hHHHHhhcCchhhh
Confidence            77777666775443

>KOG2581|consensus

Probab=94.61  E-value=3.8  Score=38.05  Aligned_cols=144  Identities=15%  Similarity=0.048  Sum_probs=99.6

Q ss_pred             hHHHHHH--HHHHHhhhcHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--C
Q psy12713         61 ELDLLSK--AKRAFEHEDYLTAIRHCTEEIESTSSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--V  130 (551)
Q Consensus        61 ~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~  130 (551)
                      ++.++..  ...++.++++.+|..+-+..+......      ...+..|+.+..++-..|+...-...+...+....  .
T Consensus       124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh  203 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH  203 (493)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence            4444443  444456689999998887765432111      33567788888888888987776666666555321  2


Q ss_pred             CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       131 ~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      +..........+-..|...+ .|+.|-....+..--  ..  ..+...+.+|.+..-+++|..|.+++-.++...|.+.
T Consensus       204 d~e~qavLiN~LLr~yL~n~-lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  204 DEEGQAVLINLLLRNYLHNK-LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             cchhHHHHHHHHHHHHhhhH-HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            23333445566778888889 999998887776421  11  2255678899999999999999999999999999743

>KOG2041|consensus

Probab=94.52  E-value=5.8  Score=39.73  Aligned_cols=207  Identities=14%  Similarity=0.081  Sum_probs=112.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713         68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL  147 (551)
Q Consensus        68 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  147 (551)
                      ...+...-..++|+.    .++.+|    ++..|..+|......-.++.|...|-+.-...    .+.  .--.++.++.
T Consensus       670 ~~~Lve~vgledA~q----fiEdnP----HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik--~vkrl~~i~s  735 (1189)
T KOG2041|consen  670 VMNLVEAVGLEDAIQ----FIEDNP----HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIK--LVKRLRTIHS  735 (1189)
T ss_pred             HHHHHHHhchHHHHH----HHhcCC----chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chh--HHHHhhhhhh
Confidence            334444445666664    455677    68899999998888777777777766543321    110  0011222211


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ...                         ..+.+-.--|++++|.+.|-.+=.   .+.  -.         .++...|+|
T Consensus       736 ~~~-------------------------q~aei~~~~g~feeaek~yld~dr---rDL--Ai---------elr~klgDw  776 (1189)
T KOG2041|consen  736 KEQ-------------------------QRAEISAFYGEFEEAEKLYLDADR---RDL--AI---------ELRKKLGDW  776 (1189)
T ss_pred             HHH-------------------------HhHhHhhhhcchhHhhhhhhccch---hhh--hH---------HHHHhhhhH
Confidence            111                         112222223555555555533211   110  00         111122555


Q ss_pred             HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      -...+.++..-.-..+  .-.++..+|..+..+..|++|.++|.+.-..        -+...++++ ...+++-.    .
T Consensus       777 frV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~-le~f~~LE----~  843 (1189)
T KOG2041|consen  777 FRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYR-LELFGELE----V  843 (1189)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHH-HHhhhhHH----H
Confidence            5544444332111111  1357788888888888888888888765321        234555555 55555433    3


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      ....-|++...+-.+|..+...|.-++|++.|-+.
T Consensus       844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence            33345777788888888888888888888887654

>KOG4814|consensus

Probab=94.52  E-value=5.5  Score=39.45  Aligned_cols=100  Identities=19%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+.+.|...++..+|..+++.|...+...|.+   ...+.....++.||..+.+.+.|.+++++|-+.+|.++-...  
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~--  432 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL--  432 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH--
Confidence            345677788888888888888888888777664   223556677788888888888888888888888887754333  


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                        .+-.+....+ ..++|+.........
T Consensus       433 --~~~~~~~~E~-~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  433 --LMLQSFLAED-KSEEALTCLQKIKSS  457 (872)
T ss_pred             --HHHHHHHHhc-chHHHHHHHHHHHhh
Confidence              3566666777 788888877766544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.44  E-value=0.13  Score=44.86  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      +...++++.|....++.+.++|+++.-+.-.|.+|.++|-+.-|++.++..++.-|+.+.+-.-...+..
T Consensus       191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999999999999987766655543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.38  E-value=0.079  Score=44.46  Aligned_cols=60  Identities=18%  Similarity=0.330  Sum_probs=47.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      .....+ +.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            344556 778888888888888888888888888888888888888888888888887653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.30  E-value=0.62  Score=43.13  Aligned_cols=99  Identities=13%  Similarity=0.153  Sum_probs=60.4

Q ss_pred             CcchHHHH----HHHHHHHhhhcHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHHHHHHhCCchHHH
Q psy12713         58 ESHELDLL----SKAKRAFEHEDYLTAIRHCTEEIESTSSN---------------HTKALARLLRATVYIFTSQSTKAI  118 (551)
Q Consensus        58 ~~~~~~~~----~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~  118 (551)
                      -+.++.|+    ..|..++++|+|..|..-|..+|+...+.               .....+-..+..||+++++.+-|+
T Consensus       169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL  248 (569)
T PF15015_consen  169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL  248 (569)
T ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence            34555554    45667888888888888888887754321               112233345666666666666676


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD  161 (551)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~  161 (551)
                      ....+.+.++|....    -++..|.++..+. +|.+|-..+-
T Consensus       249 nh~hrsI~lnP~~fr----nHLrqAavfR~Le-Ry~eAarSam  286 (569)
T PF15015_consen  249 NHSHRSINLNPSYFR----NHLRQAAVFRRLE-RYSEAARSAM  286 (569)
T ss_pred             HHHhhhhhcCcchhh----HHHHHHHHHHHHH-HHHHHHHHHH
Confidence            666666666665533    2333666666666 6666655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.24  E-value=0.13  Score=45.38  Aligned_cols=94  Identities=10%  Similarity=0.034  Sum_probs=78.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET-LGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      .|.++....|+++..|...+.- ..+.|.+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++..+|
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y-~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAY-VIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            3445555678889988877764 555889999999999999999999999987 66677889999999999999999999


Q ss_pred             CHHHHHHHHhHHHHHH
Q psy12713        346 DEAELSHIYSLRDAAI  361 (551)
Q Consensus       346 ~~~~~~~~~~~~~~~~  361 (551)
                      .++.+|..+...+...
T Consensus       174 ~~p~iw~eyfr~El~y  189 (435)
T COG5191         174 RSPRIWIEYFRMELMY  189 (435)
T ss_pred             CCchHHHHHHHHHHHH
Confidence            9999998876664443

>KOG1463|consensus

Probab=94.22  E-value=4.1  Score=36.88  Aligned_cols=61  Identities=15%  Similarity=0.116  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhc--CCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIES--TSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQ  123 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~  123 (551)
                      ..+..+.......++++++..+..++..  .|.+     ...-.....+|..+.+.|+.++-......
T Consensus         6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~   73 (411)
T KOG1463|consen    6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS   73 (411)
T ss_pred             HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            3477788888888889999999998874  2221     33456678889999999988765555444

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=3.8  Score=36.10  Aligned_cols=271  Identities=13%  Similarity=0.087  Sum_probs=128.0

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH-HHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK-VNA  138 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~  138 (551)
                      +..|......+++++|+..|.+++...-..     ...-.+...++..|...|++..-.+..........+..... ...
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            678999999999999999999999873221     22456778899999999988764444333222100000000 000


Q ss_pred             HHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCH
Q psy12713        139 HIKRAVVH-LHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIAL------NPNFH  205 (551)
Q Consensus       139 ~~~la~~~-~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~  205 (551)
                      ...+...+ .... .++.-+..+...++.....      ...-..+..++++.|.|.+|+......+..      .++-.
T Consensus        87 irtLiekf~~~~d-sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li  165 (421)
T COG5159          87 IRTLIEKFPYSSD-SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI  165 (421)
T ss_pred             HHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence            00000000 1112 3344444444333321110      122234556666667777766665554432      12233


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-----CCCcHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--
Q psy12713        206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-----HSNVVE--ACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--  276 (551)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--  276 (551)
                      ..+..-..+++..      .+..++...+..+-..     .|....  .-..-|..+....+|..|..+|-++++-..  
T Consensus       166 ~vhllESKvyh~i------rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l  239 (421)
T COG5159         166 TVHLLESKVYHEI------RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL  239 (421)
T ss_pred             ehhhhhHHHHHHH------HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence            3444444444444      4444444444433322     122222  222334455566666667666666665321  


Q ss_pred             -CCHHHH-----HHHHHHHHHhcCCHHHHHHHHH--HHHh-cCcCCHHHHHHHHHHHH--HhCCHHHHHHHHHHhccccc
Q psy12713        277 -ENASLY-----VHRAMLMLQARGNVDEAIKLIE--KAIS-IDKSCMFAYETLGTIEV--QRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       277 -~~~~~~-----~~l~~~~~~~~~~~~~A~~~~~--~~~~-~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~  345 (551)
                       .+..+.     ..+..+.   .+..++-...+.  ..++ .+.....+....+..+-  ...++..|+..|+.-+..+|
T Consensus       240 ~~d~kAc~sLkYmlLSkIM---lN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~  316 (421)
T COG5159         240 KMDVKACVSLKYMLLSKIM---LNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS  316 (421)
T ss_pred             cchHHHHHHHHHHHHHHHH---HhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence             222222     1222221   222233222221  1222 22333445555555543  23467777777776665444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.06  E-value=0.07  Score=27.83  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHH
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDK  508 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~  508 (551)
                      +.+.+.+|.++...|++++|...+++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            35678899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4814|consensus

Probab=93.90  E-value=2.2  Score=42.06  Aligned_cols=94  Identities=9%  Similarity=0.000  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF  213 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~  213 (551)
                      -+-|.-.++.. +|..+++.|...+...|.+      ......+..||....+.+.|.++++++-+.+|.++........
T Consensus       358 Wn~A~~~F~~~-~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  358 WNTAKKLFKME-KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            34555666667 7777777777777765554      3455667777777778888888888877777776655544443


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713        214 VVHKMIVPGDRERVEQSLKEFRNFVDT  240 (551)
Q Consensus       214 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  240 (551)
                      ....-      |.-++|+.+.......
T Consensus       437 ~~~~E------~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAE------DKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHh------cchHHHHHHHHHHHhh
Confidence            33333      6667777766665543

>KOG0128|consensus

Probab=93.85  E-value=8.9  Score=39.34  Aligned_cols=279  Identities=9%  Similarity=-0.016  Sum_probs=158.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +.+..+.....--..|.-++=+..++.-+..++.   ....+..+..+++..|++++-...-.++..+.|..+..+..-.
T Consensus        78 sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y---~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl  154 (881)
T KOG0128|consen   78 SSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSY---KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL  154 (881)
T ss_pred             cCcccccccCCccccccchhHHHHHHHHhccccc---chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            3344444444444455555566667777777776   7788888889999999999988888888888888877655422


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-------HHhCCHHHHHHHHHHHHhcCCCC-------H
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY-------CLFGQYEEALRNLDKTIALNPNF-------H  205 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-------~~~~~~~~A~~~~~~~l~~~~~~-------~  205 (551)
                      ......- ..+ +...+...|++++... ..+..|...+...       ...++++.....|.+++..-...       .
T Consensus       155 ~d~~~mt-~s~-~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~w  231 (881)
T KOG0128|consen  155 KDELSMT-QSE-ERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIW  231 (881)
T ss_pred             HHHHhhc-cCc-chhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHH
Confidence            2222222 225 7888899999988643 3444444444433       44566788888888887643221       1


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH----HHHHHH--H-HHHhccCHHHHHHHHHH-------H
Q psy12713        206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE----ACTLFA--Q-VLVDQEDFDGAEEYFNR-------S  271 (551)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la--~-~~~~~~~~~~A~~~~~~-------~  271 (551)
                      ..+......+...      -..++-+..+...+... -+..    .|....  . ......+++.|..-+.+       .
T Consensus       232 e~~~E~e~~~l~n------~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~  304 (881)
T KOG0128|consen  232 EMYREFEVTYLCN------VEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL  304 (881)
T ss_pred             HHHHHHHHHHHHh------HHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            1122222222221      33455666666665543 2211    111111  1 11233445555444333       3


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV-QRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++..|.....|..+-..... .|++-.-...+++++...+.+...|...|...- .++-.+.+...+.+++...|-...+
T Consensus       305 ~q~~~~~~q~~~~yidfe~~-~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL  383 (881)
T KOG0128|consen  305 VQKEPIKDQEWMSYIDFEKK-SGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDL  383 (881)
T ss_pred             hhhhHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHH
Confidence            33333333344444444233 788777777888888777777777777665442 3344455566666677766666555


Q ss_pred             HH
Q psy12713        351 SH  352 (551)
Q Consensus       351 ~~  352 (551)
                      +.
T Consensus       384 ~~  385 (881)
T KOG0128|consen  384 WK  385 (881)
T ss_pred             HH
Confidence            43

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.79  E-value=0.32  Score=35.47  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             HHHhCCchHHHHHHHHHhhcCCCCch-----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        108 YIFTSQSTKAIEDLTQLVEDTSVDPK-----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus       108 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                      ..+.|++.+|++.+.+..........     ....++..+|.++...| ++++|+..+++++++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence            34566777776666666554322211     22335555666666666 666666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.68  E-value=0.12  Score=30.64  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      .++.++|.+|...|++++|..++++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            467788899999999999999998887753

>KOG0529|consensus

Probab=93.61  E-value=4  Score=38.13  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---HHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEA  299 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~A  299 (551)
                      .-.++-+.+...+++.+|++..+|+....++.+.+  ++..=+...+++++.+|.+..+|...-.+.-.....   ..+=
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            35567778888899999999999999999998776  367888899999999999988776655543322222   5667


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHH------hCC------HHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQ------RGR------LEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      +++..+++..++.+..+|.....+...      .|+      ...-++....|+-.+|++...|...
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            888899999899999999888777663      231      2344566667777889888876554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.54  E-value=12  Score=40.02  Aligned_cols=133  Identities=14%  Similarity=0.074  Sum_probs=95.0

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh----C---CchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT----S---QSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      -..+.+..+.|++|+..|+++-...|+-....++.+..|.+...+    |   .+++|+..|++.-. .|.-|-    -|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~  555 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL----EY  555 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch----HH
Confidence            345677889999999999999999987544567888888887754    2   46677777776543 333332    45


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCCH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-----QYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~  205 (551)
                      ...|.+|...| ++++-++++.-+++..|++|.+-...-.+..++.     +-..|....--++...|...
T Consensus       556 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (932)
T PRK13184        556 LGKALVYQRLG-EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI  625 (932)
T ss_pred             HhHHHHHHHhh-hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            66899999999 9999999999999999999876544443333322     23345566666666666543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.52  E-value=6.4  Score=38.32  Aligned_cols=106  Identities=16%  Similarity=0.104  Sum_probs=66.2

Q ss_pred             HHHHHHhhhcHHHHHHHHH--HHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCT--EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      .=+.....|+++++.....  +.+..-|     ..-...++..+.++|-++.|+...+        ++..+.       .
T Consensus       267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~-----~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF-------e  326 (443)
T PF04053_consen  267 EFKTAVLRGDFEEVLRMIAASNLLPNIP-----KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF-------E  326 (443)
T ss_dssp             HHHHHHHTT-HHH-----HHHHTGGG-------HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH-------H
T ss_pred             HHHHHHHcCChhhhhhhhhhhhhcccCC-----hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh-------H
Confidence            3445567899999877775  3333333     2335566777778888888877632        233323       3


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      ...+.| +.+.|.+..+     ..+++..|..+|...+.+|+++-|.++|+++-
T Consensus       327 LAl~lg-~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  327 LALQLG-NLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHCT--HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HHHhcC-CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            556788 8888876543     34477899999999999999999999998853

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1538|consensus

Probab=93.46  E-value=1.8  Score=42.56  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      ......++|.+|....++.-+.-   +.+++-.|+.+....++++|.+.|-
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfh  828 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFH  828 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHH
Confidence            34444566666666554432221   2355566666666666666655543

>KOG3807|consensus

Probab=93.17  E-value=6.3  Score=35.56  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        316 AYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      .-..++.|..++|+..+|++.++...+-.|
T Consensus       277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            345789999999999999999998877666

>KOG1538|consensus

Probab=93.14  E-value=8.3  Score=38.30  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-----C-----chhHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-----S-----NHTKALARLLRATVYIFTSQSTKAIEDLTQ  123 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-----~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  123 (551)
                      ..|-.+|...+..=+++-|.+.|.++-...-     +     ......--..+|.++...|++.+|.+.|.+
T Consensus       586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4566777777777788888887776522100     0     000001124566677777788887777765

>KOG0529|consensus

Probab=93.12  E-value=7.6  Score=36.36  Aligned_cols=131  Identities=18%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ--YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS  230 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  230 (551)
                      .++-+.+...+++.+|+.-.+|+.+..++.+.+.  +..=+...+++++.+|.+..+|..+-.+.-..  -.......+-
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~--~~~~~~~~~E  168 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA--ERSRNLEKEE  168 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH--hcccccchhH
Confidence            4455556666666677666666666666665543  45566666677777766666655444433322  1122245566


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHh------ccC------HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        231 LKEFRNFVDTHSNVVEACTLFAQVLVD------QED------FDGAEEYFNRSIRVDPENASLYVHR  285 (551)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~------~~~A~~~~~~~~~~~~~~~~~~~~l  285 (551)
                      +++..+++..++.+..+|.....++..      .|+      ...-+.....++-.+|++..+|+..
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            666666666677776666666555541      221      2234455556666677777766653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=0.81  Score=40.16  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      ..++=..+...+ +++.|....++.+..+|.++.-+...|.+|.++|.+.-|++.+...++..|+.+.+-.
T Consensus       184 l~~lk~~~~~e~-~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         184 LRNLKAALLREL-QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHhh-chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            334455666777 8888888888888888888888888888888888888888888888888888776544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.86  E-value=10  Score=37.03  Aligned_cols=159  Identities=16%  Similarity=0.146  Sum_probs=92.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        144 VVHLHAASDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      ......+ +++++....... ++-|.- ......++..+.++|..+.|+...        .++...+.++   ...    
T Consensus       269 k~av~~~-d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~l----  331 (443)
T PF04053_consen  269 KTAVLRG-DFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQL----  331 (443)
T ss_dssp             HHHHHTT--HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHC----
T ss_pred             HHHHHcC-Chhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---Hhc----
Confidence            3445567 888877766521 112222 344666777888888888887643        3455566555   444    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                        |+.+.|.+..++     .+++..|..+|...+..|+++-|..+|+++-.        +..+..+|.. .|+.+.=.+.
T Consensus       332 --g~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~-~g~~~~L~kl  395 (443)
T PF04053_consen  332 --GNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSS-TGDREKLSKL  395 (443)
T ss_dssp             --T-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHH-CT-HHHHHHH
T ss_pred             --CCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHH-hCCHHHHHHH
Confidence              888888776543     35678999999999999999999999988532        2334445444 7887665565


Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      .+.+......     ...-.+++..|+.++.++.+.+.
T Consensus       396 ~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  396 AKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            5555443321     22233455667777777777655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.56  E-value=0.23  Score=25.81  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345666677777777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3783|consensus

Probab=92.09  E-value=13  Score=36.35  Aligned_cols=140  Identities=12%  Similarity=0.015  Sum_probs=83.6

Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChh--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRE--RVEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      .+....|+-+++...+-++....+.....-..+...++.. ..+...+  +.+...+.+.......|+++......+..+
T Consensus       198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l  277 (546)
T KOG3783|consen  198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL  277 (546)
T ss_pred             HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence            3444566667777766665544433333222222222222 2222222  224555555666677888888888888888


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713        256 VDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  321 (551)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  321 (551)
                      ...|+.+.|+..+...+.  +..    ...++.+|.++.. +.+|..|-..+....+...-+.-.|..++
T Consensus       278 ~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  278 SIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDLLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence            888888888888887776  222    2245667777666 78888888888887766544333343333

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.92  E-value=8.9  Score=34.31  Aligned_cols=100  Identities=10%  Similarity=-0.073  Sum_probs=48.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCch-HHHHHHHHHhhcC--CCCchh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQST-KAIEDLTQLVEDT--SVDPKI  134 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~--~~~~~~  134 (551)
                      .++.++.-|..+++.|++.-|..+..-.++.....  +.+....-.++.+....+.-+ +-.+..+++++..  ...+.-
T Consensus         9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G   88 (260)
T PF04190_consen    9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG   88 (260)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred             HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence            45666777777788888877766555444331100  113333345555554443222 2334444444432  111111


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713        135 KVNAHIKRAVVHLHAASDFTKAFADL  160 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~~~A~~~~  160 (551)
                      ....+..+|..+++.+ ++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~-~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEG-NYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhc-cHHHHHHHH
Confidence            1234455777777777 777776665

; PDB: 3LKU_E 2WPV_G.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.90  E-value=2.2  Score=29.29  Aligned_cols=55  Identities=7%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             HHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713        104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL  160 (551)
Q Consensus       104 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~  160 (551)
                      .|.-++...+.++|+..++++++..++.+. ...++-.+..+|...| ++.+.+.+.
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~G-kyr~~L~fA   66 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWG-KYREMLAFA   66 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            344444445555555555555554444332 2334444444555555 555544443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1463|consensus

Probab=91.66  E-value=10  Score=34.49  Aligned_cols=175  Identities=16%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--hh
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV--AD  172 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~--~~  172 (551)
                      ..+...|+..++|.+|+......+..  .-++....+..+..-...|.... +..+|...+..+-..     .|..  +.
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~-Nl~KakasLTsART~AnaiYcpPqlQa~  210 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALR-NLPKAKASLTSARTTANAIYCPPQLQAT  210 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHh-cchhHHHHHHHHHHhhcccccCHHHHHH
Confidence            34555666666666666665554431  11222223334444566666666 666666666555432     1222  11


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP---NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                      .-..-|.++..-.+|.-|..+|-++++-..   ++..+...+-+.+... +....-+--.++-.-+.+++....+.++..
T Consensus       211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK-IMln~~ddv~~lls~K~~l~y~g~~i~Amk  289 (411)
T KOG1463|consen  211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK-IMLNLPDDVAALLSAKLALKYAGRDIDAMK  289 (411)
T ss_pred             HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH-HHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence            222334455555666666666666665422   1223333332222211 111112222233333444555555666666


Q ss_pred             HHHHHHHh--ccCHHHHHHHHHHHHhcCCCC
Q psy12713        250 LFAQVLVD--QEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       250 ~la~~~~~--~~~~~~A~~~~~~~~~~~~~~  278 (551)
                      ..+..+..  ..+|+.|+..|..-+..+|--
T Consensus       290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~iv  320 (411)
T KOG1463|consen  290 AVAEAFGNRSLKDFEKALADYKKELAEDPIV  320 (411)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence            66666643  346777777777766655543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.65  E-value=0.43  Score=27.57  Aligned_cols=29  Identities=24%  Similarity=0.439  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      +++..+|.+....++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777888888888888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.58  E-value=0.57  Score=26.72  Aligned_cols=21  Identities=14%  Similarity=-0.113  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHhCCchHHHHH
Q psy12713        100 ARLLRATVYIFTSQSTKAIED  120 (551)
Q Consensus       100 ~~~~la~~~~~~g~~~~A~~~  120 (551)
                      .++.+|..+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.38  E-value=9.8  Score=33.69  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CcCCH-
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI-----DKSCM-  314 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-  314 (551)
                      .-..++..+.+.|+|.+|+....-.+..      .+.-..++..-..+|.. ..+..++...+..+-..     .|... 
T Consensus       127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~-irnv~KskaSLTaArt~Ans~YCPpqlq  205 (421)
T COG5159         127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE-IRNVSKSKASLTAARTLANSAYCPPQLQ  205 (421)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH-HHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence            3456778889999999999887766542      23445566666777665 77777777766655432     23222 


Q ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        315 -FAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       315 -~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                       ..-..-|.++..-.+|.-|..+|-.+++-
T Consensus       206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         206 AQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HHHHHhccceeeccccchhHHHHHHHHHhc
Confidence             22233466677778899999999888774

>KOG3807|consensus

Probab=91.33  E-value=11  Score=34.13  Aligned_cols=62  Identities=15%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  127 (551)
                      ...-+..-+...+..+..+-++.-..+++++|+   .+.++..++.--  .--..+|.+.++++++.
T Consensus       184 ~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~e---CA~AyvLLAEEE--a~Ti~~AE~l~k~ALka  245 (556)
T KOG3807|consen  184 LRPEDEIMQKAWRERNPPARIKAAYQALEINNE---CATAYVLLAEEE--ATTIVDAERLFKQALKA  245 (556)
T ss_pred             cChHHHHHHHHHHhcCcHHHHHHHHHHHhcCch---hhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence            334455566677888888889999999999998   999998887642  23456788888888764

>KOG1839|consensus

Probab=91.33  E-value=2.4  Score=45.67  Aligned_cols=163  Identities=17%  Similarity=0.237  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhCCHHHHHH------HHHHH-HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-----
Q psy12713        174 YYQRGQIYCLFGQYEEALR------NLDKT-IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-----  241 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~------~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----  241 (551)
                      ....|......|.+.+|.+      .+... -.+.|.....+..++..+.+.      |+.++|+..-.++.-+.     
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~------~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL------GDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh------cchHHHHHhcccceeeechhcc
Confidence            3455666666777777776      44422 233566666777777666666      99999998887765432     


Q ss_pred             ---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713        242 ---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID  310 (551)
Q Consensus       242 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  310 (551)
                         |+....+.+++...+..++...|...+.++...        .|.-.....+++.++.. .++++.|+.+.+.+....
T Consensus      1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG-VEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence               445667888888888888888999888887764        34445556677777555 899999999999998753


Q ss_pred             c--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        311 K--------SCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       311 ~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      .        .....+..+++++...+++..|....+....+
T Consensus      1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            2        12455667778887788877777766665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.18  E-value=15  Score=35.53  Aligned_cols=191  Identities=16%  Similarity=0.040  Sum_probs=118.7

Q ss_pred             HHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713         69 KRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH  148 (551)
Q Consensus        69 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  148 (551)
                      ...-.+..+.-...++.+++....    +-.+++.++.||... ..++-...+++.++.+-++....-    .++..|..
T Consensus        74 ~~f~~n~k~~~veh~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~R----eLa~~yEk  144 (711)
T COG1747          74 TIFGDNHKNQIVEHLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGR----ELADKYEK  144 (711)
T ss_pred             HHhccchHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHH----HHHHHHHH
Confidence            334445556667788999998887    577899999999988 567788889998888776644332    36666655


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC---C---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--hc
Q psy12713        149 AASDFTKAFADLDEAEKVDPN---V---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM--IV  220 (551)
Q Consensus       149 ~~~~~~~A~~~~~~~~~~~~~---~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~  220 (551)
                       + +.+++..+|.+++...-.   +   .+.|-.+-..  --.+.+.-+....+.-.....      ..+.+.+.-  ..
T Consensus       145 -i-k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~------~~~~Vl~qdv~~~  214 (711)
T COG1747         145 -I-KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGE------GRGSVLMQDVYKK  214 (711)
T ss_pred             -h-chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhcc------chHHHHHHHHHHH
Confidence             7 899999999998865321   1   1222222110  112222222222222111111      111111211  45


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--------------------ccCHHHHHHHHHHHHhcCCCC
Q psy12713        221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD--------------------QEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~  278 (551)
                      |....++.+|+..+...++.+..+..+.-.+...+..                    -.++..++.-|++.+..+..+
T Consensus       215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            6677889999999998888887777666555554444                    557788888888887776544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.96  E-value=1.7  Score=38.80  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      .++..++..+...| +++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus       154 ~~l~~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34555666666666 777777777777777777777777777777777777777777666554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.56  E-value=2.8  Score=35.11  Aligned_cols=77  Identities=17%  Similarity=0.089  Sum_probs=56.2

Q ss_pred             HHhCCchHHHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHH
Q psy12713        109 IFTSQSTKAIEDLTQLVEDTS-VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN----VADSYYQRGQIYCL  183 (551)
Q Consensus       109 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~  183 (551)
                      +..-.-++|...|-++-.... ++    ....+.+|..|.. . +.++++..+.+++++.+.    +++++..++.++..
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t----~elq~aLAtyY~k-r-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELET----AELQYALATYYTK-R-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            444344678777776554322 22    3344558877774 4 699999999999998544    48999999999999


Q ss_pred             hCCHHHHH
Q psy12713        184 FGQYEEAL  191 (551)
Q Consensus       184 ~~~~~~A~  191 (551)
                      +|+++.|-
T Consensus       191 ~~~~e~AY  198 (203)
T PF11207_consen  191 LKNYEQAY  198 (203)
T ss_pred             hcchhhhh
Confidence            99999885

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.37  E-value=0.87  Score=41.42  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=54.7

Q ss_pred             HHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      |..+|.+|+.+.|++...|..+|.++...|+.=.|+-+|-+++-..--++.|..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999998876679999999999987

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.45  E-value=2  Score=38.34  Aligned_cols=95  Identities=17%  Similarity=0.085  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHh----hhc--HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713         62 LDLLSKAKRAFE----HED--YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        62 ~~~~~~a~~~~~----~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      ...+.++-.++.    .++  |..=+...++.++..     ...++..++..+...|+++.++..+++.+..+|-+..  
T Consensus       116 ~~~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~-----~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~--  188 (280)
T COG3629         116 GLRFEQAGELLSEGPVLGDDRFDEWVLEQRRALEEL-----FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP--  188 (280)
T ss_pred             hHHHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH--
Confidence            335666655555    344  666555556655542     6788999999999999999999999999999998855  


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                        .|..+-..|...| +...|+..|++.-+.
T Consensus       189 --~~~~lm~~y~~~g-~~~~ai~~y~~l~~~  216 (280)
T COG3629         189 --AYLRLMEAYLVNG-RQSAAIRAYRQLKKT  216 (280)
T ss_pred             --HHHHHHHHHHHcC-CchHHHHHHHHHHHH
Confidence              5555889999999 999999999988774

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.41  E-value=3.1  Score=38.81  Aligned_cols=55  Identities=18%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      ..+..||.++++.+-|+....+.+..+|..+..+...+.+ ++.+.+|.+|-..+.
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAav-fR~LeRy~eAarSam  286 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAV-FRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666665555555555 333555555554443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=89.28  E-value=7.3  Score=37.15  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  127 (551)
                      ....++..+++.++|..|...+..+...-|.. ..........|..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45678899999999999999999999864431 111223334455567888999999999998764

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=89.24  E-value=10  Score=33.28  Aligned_cols=26  Identities=12%  Similarity=0.206  Sum_probs=13.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDP  168 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~  168 (551)
                      +|.+..+.| +|++.+.++++++..+|
T Consensus         7 ~Aklaeq~e-Ry~dmv~~mk~~~~~~~   32 (236)
T PF00244_consen    7 LAKLAEQAE-RYDDMVEYMKQLIEMNP   32 (236)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHccCC
Confidence            455555555 55555555555555544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.15  E-value=0.77  Score=27.59  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=23.9

Q ss_pred             HhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713        486 YYQRGQIYCLFGQYEEALRNLDKTIAL  512 (551)
Q Consensus       486 ~~~lg~~~~~~g~~~~A~~~~~~al~~  512 (551)
                      .+.+|.+|..+|+.+.|.+.++.++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            357899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=88.86  E-value=31  Score=35.65  Aligned_cols=127  Identities=11%  Similarity=0.040  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ....|..|...+..|++..+.....+ +.-.|-   .  .+..........+..  .-..+...++..|+.|...  .+.
T Consensus        33 ~r~~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL---~--~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~--~Lr  102 (644)
T PRK11619         33 QRQRYQQIKQAWDNRQMDVVEQLMPT-LKDYPL---Y--PYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPAR--SLQ  102 (644)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh-ccCCCc---H--hHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHH--HHH
Confidence            46789999999999999998766554 343442   1  222222222222221  1224444555566655422  112


Q ss_pred             HHHH-HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        141 KRAV-VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       141 ~la~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      .... .+...+ ++..-+.++    ...|.+.......+......|+.++|.....++.....
T Consensus       103 ~~~l~~La~~~-~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~  160 (644)
T PRK11619        103 SRFVNELARRE-DWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK  160 (644)
T ss_pred             HHHHHHHHHcc-CHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence            1222 222345 666655532    23477777778888888999999888888777765543

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.59  E-value=19  Score=32.83  Aligned_cols=186  Identities=13%  Similarity=0.173  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK  232 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  232 (551)
                      -++|+..-.-...+.|..++++-.++.+..+..+...=...=-..+-+...+...|              +.+-.+++..
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------------~r~lI~eg~a  277 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------------DRALIDEGLA  277 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------------hHHHHHHHHH
Confidence            45666666667777787777777666665543221100000000011111122222              2255677778


Q ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        233 EFRNFVDTH-SNVVEACTLFAQVLVD-----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       233 ~~~~~~~~~-~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      .+.++.... |.-....-.++.++..     .-+|..-...|.-.....|+ +.+-.|.+...-. ..-.+.++...+..
T Consensus       278 ll~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~-~~Gp~agLa~ve~L  355 (415)
T COG4941         278 LLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAM-REGPAAGLAMVEAL  355 (415)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHH-hhhHHhHHHHHHHh
Confidence            888877654 3333333334444432     33676666677766666665 4555566666333 45567777777766


Q ss_pred             Hhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        307 ISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       307 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      ...  -......+...|.++.+.|+.++|...|++++.+.++..+-..+.
T Consensus       356 ~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         356 LARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             hcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence            554  233455677899999999999999999999999998877754443

>KOG2114|consensus

Probab=88.44  E-value=26  Score=36.26  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      .+....|..++..|++++|...|-+.+.
T Consensus       369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~  396 (933)
T KOG2114|consen  369 EIHRKYGDYLYGKGDFDEATDQYIETIG  396 (933)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence            3444555555566666666665555554

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.94  E-value=16  Score=34.94  Aligned_cols=64  Identities=14%  Similarity=0.026  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                      ...+...+..++|..|...+..+...-|.+..+.....+..|..++..- ++.+|.+.++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence            4455566677777777777777776423322222223333455556666 777777777766554

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.93  E-value=5.2  Score=35.15  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhc
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~  127 (551)
                      .++..|....+.|+|++.+.++++++..+|.  ...+-...++.+|- ..|..-.+...+......
T Consensus         3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~   66 (236)
T PF00244_consen    3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE--LTEEERNLLSVAYKNVIGSRRASWRILSSIEQK   66 (236)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence            4677899999999999999999999999886  45566666666663 345555566666555443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.70  E-value=1.7  Score=26.13  Aligned_cols=25  Identities=32%  Similarity=0.191  Sum_probs=15.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIE   89 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~   89 (551)
                      +..|..|+..|+++.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4456666666666666666666664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.13  E-value=2.4  Score=33.50  Aligned_cols=56  Identities=21%  Similarity=0.137  Sum_probs=44.9

Q ss_pred             CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhh
Q psy12713        481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMA  536 (551)
Q Consensus       481 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  536 (551)
                      .-.+.....+.-.+..|++.-|.+....++..+|+|..++..++.++..+|...+.
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            34667778888889999999999999999999999999999999999988765543

>KOG0546|consensus

Probab=86.84  E-value=1  Score=40.89  Aligned_cols=82  Identities=22%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                      -...+.+..|+.....++..++....+++.+|..+....++++|++.++.+....|++......+..+-....+......
T Consensus       285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~  364 (372)
T KOG0546|consen  285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQK  364 (372)
T ss_pred             cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHH
Confidence            34457788888888888888899999999999999999999999999999999999999888777777666555544444


Q ss_pred             hh
Q psy12713        539 DE  540 (551)
Q Consensus       539 ~~  540 (551)
                      ..
T Consensus       365 ~~  366 (372)
T KOG0546|consen  365 KA  366 (372)
T ss_pred             HH
Confidence            33

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.88  E-value=1.9  Score=23.43  Aligned_cols=28  Identities=14%  Similarity=0.134  Sum_probs=16.7

Q ss_pred             cCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713        497 GQYEEALRNLDKTIALNPNFHVARAQRH  524 (551)
Q Consensus       497 g~~~~A~~~~~~al~~~p~~~~a~~~l~  524 (551)
                      |+.+.|...|++++...|.++..|....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            3455666666666666666666555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.88  E-value=7  Score=37.16  Aligned_cols=65  Identities=9%  Similarity=0.064  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCC-----CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTS-----VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      .+...+.+++.-+|||..|++.++.+ +++.     .-+...+..++..|-+|+.++ +|.+|++.|..++-
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlr-RY~DAir~f~~iL~  192 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLR-RYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            45566777888899999999987653 2221     123334557777889999999 99999998887763

>PF12854 PPR_1: PPR repeat

Probab=85.65  E-value=2.5  Score=23.66  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713        313 CMFAYETLGTIEVQRGRLEEAVKCFNK  339 (551)
Q Consensus       313 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  339 (551)
                      +...|..+...+.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            366788888888888888888888875

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.18  E-value=2.9  Score=33.04  Aligned_cols=51  Identities=20%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ  113 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~  113 (551)
                      -++..+..|...+..|++.-|..+.+.++..+|+   +..+...++.++.++|.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~---n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPD---NEEARQLKADALEQLGY  119 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHH
Confidence            4577788899999999999999999999999998   88888888888877664

>KOG0128|consensus

Probab=85.15  E-value=51  Score=34.26  Aligned_cols=394  Identities=14%  Similarity=0.074  Sum_probs=212.1

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYE  188 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~  188 (551)
                      |.-+.=+..++.-+.+++.+    ...+..+..++...| ++++-...-..+..+.|..+..|.....-...   .++..
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~----~~~~v~Li~llrk~~-dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~  167 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYK----YAQMVQLIGLLRKLG-DLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERK  167 (881)
T ss_pred             ccchhHHHHHHHHhcccccc----hHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchh
Confidence            34445566666666666655    345555888888889 88888887788888888888887765543332   36777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHhccC
Q psy12713        189 EALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQED  260 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~  260 (551)
                      ++...|++++.- -+....|...+...... ..+...++++.-...|.+++..-..       .+..+..+-..|...-.
T Consensus       168 ~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~  246 (881)
T KOG0128|consen  168 EVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE  246 (881)
T ss_pred             HHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH
Confidence            888889998853 34555555555444433 4445568888889999998875322       23455566666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCHH----HHHHH--HHHHHHhcCCHHHHHHHH-------HHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        261 FDGAEEYFNRSIRVDPENAS----LYVHR--AMLMLQARGNVDEAIKLI-------EKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~----~~~~l--~~~~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      .++-+.++...+... -+..    .+...  +..+.....+++.|..-+       ++.++..|.-...|..+-......
T Consensus       247 ~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~  325 (881)
T KOG0128|consen  247 QRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS  325 (881)
T ss_pred             HHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            677777777766654 2211    11111  122222245555555543       344444555566777788888889


Q ss_pred             CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH-HHH-HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhcccc
Q psy12713        328 GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI-AQM-KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA  405 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  405 (551)
                      |....-...+++++...+.+...|..++...... ... .............+....++.....++..-......+...-
T Consensus       326 G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l  405 (881)
T KOG0128|consen  326 GDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNL  405 (881)
T ss_pred             CCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHH
Confidence            9998888899999888888777766654331100 000 00011111223334444444444444443332222111100


Q ss_pred             C-CCCCcc--ccCcchhhHHHHhhhccCCccccCCCcch-hhhhhhhhcc--------chhhhch-hhhhcChhHHHHhh
Q psy12713        406 D-KGGKTV--VMDKADYTQKMTSILNSNDYEIIPGDPTK-TIEESEKYGN--------LENESGQ-KHAASDFTKAFADL  472 (551)
Q Consensus       406 ~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~-~~~~~~~~~A~~~~  472 (551)
                      . .....+  +.+...|...-........++.....+.. +..+.+.++.        +...+.. +...++.+.|..++
T Consensus       406 ~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iW  485 (881)
T KOG0128|consen  406 EKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIW  485 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            0 000000  00000011111111111111111111111 1111111211        1111111 23457777777777


Q ss_pred             HHhhccCCCchH-HHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713        473 DEAEKVDPNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIAL  512 (551)
Q Consensus       473 ~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~  512 (551)
                      +..+...-.+.. .|+....+-...|+...|...+++|+..
T Consensus       486 n~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  486 NFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             hccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            777666544444 7777777788889999999988888764

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=84.67  E-value=19  Score=31.24  Aligned_cols=25  Identities=16%  Similarity=0.148  Sum_probs=20.9

Q ss_pred             HHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713         68 AKRAFEHEDYLTAIRHCTEEIESTS   92 (551)
Q Consensus        68 a~~~~~~g~~~~A~~~~~~~l~~~~   92 (551)
                      -.-++..|+|+.|+.+..-+|+.+-
T Consensus        90 mvW~~D~Gd~~~AL~ia~yAI~~~l  114 (230)
T PHA02537         90 MVWRFDIGDFDGALEIAEYALEHGL  114 (230)
T ss_pred             eeeeeeccCHHHHHHHHHHHHHcCC
Confidence            3446789999999999999998763

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.67  E-value=2.2  Score=35.96  Aligned_cols=60  Identities=23%  Similarity=0.290  Sum_probs=54.7

Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV  518 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  518 (551)
                      +.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            445578999999999999999999999999999999999999999999999999998743

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=84.48  E-value=5.1  Score=36.38  Aligned_cols=60  Identities=18%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        156 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       156 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      |..+|.+|+.+.|+++..+..+|.++...|+.-.|+-+|-+++-.....+.+..++....
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            567888888888888888888888888888888888888888866544555555555433

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.24  E-value=9.5  Score=32.39  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=39.6

Q ss_pred             cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      .+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++......|.
T Consensus        14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr   76 (273)
T COG4455          14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR   76 (273)
T ss_pred             hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence            566666666666666666666666666666666666666666666666666666555444443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.05  E-value=13  Score=28.81  Aligned_cols=61  Identities=16%  Similarity=0.095  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      ..+|.-.+-.+|+-++-.+.+....+....+|+.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3344444444777777777777776655566888888888888888888888888887654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.90  E-value=3.6  Score=22.23  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      .+.|...|++++...|.++..|..
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~   26 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLK   26 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHH
Confidence            344444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=83.84  E-value=32  Score=30.84  Aligned_cols=27  Identities=26%  Similarity=0.244  Sum_probs=21.0

Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        243 NVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       243 ~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      .++..+..+|..+.+.|++.+|..+|-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            468899999999999999988887764

; PDB: 3LKU_E 2WPV_G.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.78  E-value=5.2  Score=35.51  Aligned_cols=59  Identities=10%  Similarity=0.003  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA  163 (551)
Q Consensus       100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~  163 (551)
                      .+...+..|...|.+.+|+++.++++..+|-+..    .+..+-.++...| +--.+++.|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~----~nk~lm~~la~~g-D~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ----DNKGLMASLATLG-DEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHhc-cchhhhhHHHHH
Confidence            4445556666777777777777777777776644    3334666667777 666666655554

>PF12854 PPR_1: PPR repeat

Probab=83.68  E-value=3.4  Score=23.11  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=19.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      +...|..+...+.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445667777777777777777777664

>KOG0686|consensus

Probab=82.62  E-value=9  Score=35.78  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C----C
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV----D----P  168 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~----~  168 (551)
                      .-.++..+|.-|...|+++.|++.|.++-..-.. ..-.++.+.+...+-...| +|..-..+..++...    .    .
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~-nw~hv~sy~~~A~st~~~~~~~~q~  226 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMG-NWGHVLSYISKAESTPDANENLAQE  226 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhc-chhhhhhHHHHHHhCchhhhhHHHh
Confidence            4678889999999999999999999996654433 3334677788888888888 887777777666655    1    1


Q ss_pred             CChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        169 NVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      -.+.+...-|.+....++|..|..+|-.+.
T Consensus       227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            112344445556666779999999887654

>KOG2581|consensus

Probab=81.53  E-value=48  Score=31.28  Aligned_cols=208  Identities=14%  Similarity=0.094  Sum_probs=121.1

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----CCC-------
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-----SVD-------  131 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~-------  131 (551)
                      ..-......|-+..--.+..++++.-|..  ..+...++.+...++..|.  ++..-+...+-..     |.+       
T Consensus        35 ke~~~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~  112 (493)
T KOG2581|consen   35 KEQLAQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQ  112 (493)
T ss_pred             HHHHHHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccc
Confidence            33444566676666666677777777754  2344555555555554443  4554444433211     100       


Q ss_pred             ---c----hhHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcC-CCC--------hhHHHHHHHHHHHhCCHHHHHHH
Q psy12713        132 ---P----KIKVNAHIKR--AVVHLHAASDFTKAFADLDEAEKVD-PNV--------ADSYYQRGQIYCLFGQYEEALRN  193 (551)
Q Consensus       132 ---~----~~~~~~~~~l--a~~~~~~~~~~~~A~~~~~~~~~~~-~~~--------~~~~~~la~~~~~~~~~~~A~~~  193 (551)
                         .    .....+|..+  ...++... ++.+|..+-+..+... -.+        +..|+.+..+|...|+...-...
T Consensus       113 ~a~~~k~~~~Ei~aY~~lLv~Lfl~d~K-~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~  191 (493)
T KOG2581|consen  113 SALKRKPLPAEIEAYLYLLVLLFLIDQK-EYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSF  191 (493)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence               0    0013344333  33344557 8999988877665431 111        45677888888888887766666


Q ss_pred             HHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh--CC--CcHHHHHHHHHHHHhccCHHHHHHH
Q psy12713        194 LDKTIALNP--NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT--HS--NVVEACTLFAQVLVDQEDFDGAEEY  267 (551)
Q Consensus       194 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~  267 (551)
                      +...+....  .+......+..+++  ..|...+.++.|.....+..--  ..  ......+.+|.+..-+++|..|.++
T Consensus       192 l~~~lrtAtLrhd~e~qavLiN~LL--r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~  269 (493)
T KOG2581|consen  192 LHALLRTATLRHDEEGQAVLINLLL--RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEY  269 (493)
T ss_pred             HHHHHHHhhhcCcchhHHHHHHHHH--HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHH
Confidence            655554321  22222222333333  3344458888888777665411  11  2245677889999999999999999


Q ss_pred             HHHHHhcCCCC
Q psy12713        268 FNRSIRVDPEN  278 (551)
Q Consensus       268 ~~~~~~~~~~~  278 (551)
                      +-+++...|++
T Consensus       270 ~~qa~rkapq~  280 (493)
T KOG2581|consen  270 FLQALRKAPQH  280 (493)
T ss_pred             HHHHHHhCcch
Confidence            99999999975

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.74  E-value=3.8  Score=38.82  Aligned_cols=61  Identities=23%  Similarity=0.399  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh--------cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEK--------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      ++..+.+++.-+| +|..|++.++..--        ..+-+...++..|-+|+.+++|.+|++.|..++-
T Consensus       124 SligLlRvh~LLG-DY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLG-DYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhcc-CHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666788999999 99999998875311        1233466889999999999999999999998874

>KOG2063|consensus

Probab=80.73  E-value=84  Score=33.56  Aligned_cols=170  Identities=12%  Similarity=0.004  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCChh------
Q psy12713        101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF--TKAFADLDEAEKVDPNVAD------  172 (551)
Q Consensus       101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~------  172 (551)
                      +..++..|...|+.++|++.+.+......+........+-.....+...+ ..  +-..++-.=.+..+|....      
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~-~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLG-AENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc-ccchhHHHHHhhhhhccCchhheeeeecc
Confidence            56778888888888888888888877432111111222233333333444 33  4444444444444444311      


Q ss_pred             -------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh-h-cCCChhHHHHHHHH--HHHHHH-
Q psy12713        173 -------SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKM-I-VPGDRERVEQSLKE--FRNFVD-  239 (551)
Q Consensus       173 -------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~A~~~--~~~~~~-  239 (551)
                             .-.....-|......+-++.+++.++....... ..+..+...|... . .....++-+++.+.  .++... 
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                   001112234556677778888888877655433 3333333333222 1 11222222333333  222211 


Q ss_pred             ------hCCCc-------HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713        240 ------THSNV-------VEACTLFAQVLVDQEDFDGAEEYFNRS  271 (551)
Q Consensus       240 ------~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~  271 (551)
                            .+|+.       ...|...+.++.+.|+.++|+..|-..
T Consensus       666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~  710 (877)
T KOG2063|consen  666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE  710 (877)
T ss_pred             hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence                  11111       345566677777777777777665443

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.42  E-value=42  Score=29.87  Aligned_cols=130  Identities=10%  Similarity=0.066  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHhcCCHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVD  297 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~  297 (551)
                      -++.-+..+..+++.+|.+...|...-.++...  .++..-....++.++.++.+..+|...-.+.      .. ...+.
T Consensus        89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k  167 (328)
T COG5536          89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLK  167 (328)
T ss_pred             hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHH
Confidence            345556677888888898888888777776554  5677777788888888888877665444331      11 23344


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHH---HHHHHHhCC------HHHHHHHHHHhcccccCHHHHHHHHhH
Q psy12713        298 EAIKLIEKAISIDKSCMFAYETL---GTIEVQRGR------LEEAVKCFNKALPLARDEAELSHIYSL  356 (551)
Q Consensus       298 ~A~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~  356 (551)
                      .-.++-..++..++.+..+|...   -...+..|+      +++-+++.-.++-.+|++..+|.....
T Consensus       168 ~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~  235 (328)
T COG5536         168 HELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG  235 (328)
T ss_pred             HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence            44666667778888888888766   333333443      455566677777788888887766543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.37  E-value=29  Score=31.07  Aligned_cols=58  Identities=17%  Similarity=0.080  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      ...+..|...| .+.+|+++.++++..+|-+...+..+-.++..+|+--.+++.|++.-
T Consensus       283 gkva~~yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34556667777 88888888888888888888888888888888888777777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	551
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		6e-13
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		9e-09
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		9e-09
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		3e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-05
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		2e-04
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-04
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-04
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-04
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		5e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-04

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +VN++I  A++ +   +D T+ +   D+A K+D N +  YY RGQ+  +   Y++A ++ 
Sbjct: 269 RVNSYIYMALI-MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
           DK   L+P       Q   + ++     D E +    K  R F +      E    FA++
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK--RKFPEAP----EVPNFFAEI 381
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------GNVDEAIKLIEKA 306
           L D+ DFD A + ++ +I ++ +   +YV  A L+ +A          N  EA  L+EKA
Sbjct: 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
             +D     A   L  +++Q+  ++EA+  F ++  LAR   E     +  +AA  Q ++
Sbjct: 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRI 501
Query: 367 CERYNIKKKV 376
                + KK+
Sbjct: 502 RSDPVLAKKI 511

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
           F    +A  ++P    +YY RGQ+Y +   Y+ A  +  K  +LNP       Q   +++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
           K      + +  +S   F         + E  T FA++L D+ DFD A + ++ + R++ 
Sbjct: 356 K------QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 277 ENASLYVHRAMLMLQAR----------GNVDE-----AIKLIEKAISIDKSCMFAYETLG 321
               ++V    L+ +A             +DE     AIKL+ KA  +D     A   L 
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
            +++Q  +++EA++ F  +  LAR   E     +  +AA  Q ++
Sbjct: 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 514

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
           F    +A  ++P    +YY RGQ+Y +   Y+ A  +  K  +LNP       Q   +++
Sbjct: 292 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 351
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
           K      + +  +S   F         + E  T FA++L D+ DFD A + ++ + R++ 
Sbjct: 352 K------QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 405
Query: 277 ENASLYVHRAMLMLQAR----------GNVDE-----AIKLIEKAISIDKSCMFAYETLG 321
               ++V    L+ +A             +DE     AIKL+ KA  +D     A   L 
Sbjct: 406 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 465
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
            +++Q  +++EA++ F  +  LAR   E     +  +AA  Q ++
Sbjct: 466 QLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 510

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 8/214 (3%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
           ++ +I  A   L AA D   A      A + +P++       G +    G+ EEA     
Sbjct: 101 IDGYINLAAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
           K I   PNF VA +    V +       +  +  ++  F   V    N ++A      VL
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNA------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
            +   FD A   + R++ + P +A ++ + A +  + +G +D AI    +AI +      
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPD 272
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           AY  L     ++G + EA  C+N AL L    A+
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
           N  EA          Q D+D A EY+ +++ +DP NA  + +      + +G+ DEAI+ 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            +KA+ +D +   A+  LG    ++G  +EA++ + KAL L  + AE
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
           Q D+D A EY+ +++ +DP +A  + +      + +G+ DEAI+  +KA+ +D     A+
Sbjct: 14  QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAW 72
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM---KVCERYNIKK 374
             LG    ++G  +EA++ + KAL L    AE    Y+L +A   Q    +  E Y    
Sbjct: 73  YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKAL 130
Query: 375 KVSPRS 380
           ++ PRS
Sbjct: 131 ELDPRS 136

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
           N  EA          Q D+D A EY+ +++ + P NA  + +      + +G+ DEAI+ 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            +KA+ +  +   A+  LG    ++G  +EA++ + KAL L  + AE
Sbjct: 66  YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVN-AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
           KA E  T+ +E+   D    +N A++      L + ++  +A A  D+A ++D + A +Y
Sbjct: 41  KAAEAFTKAIEENKEDAIPYINFANL------LSSVNELERALAFYDKALELDSSAATAY 94
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF 234
           Y  G +Y +   Y+EA    +K +       +      +++  ++V  ++ ++  +L   
Sbjct: 95  YGAGNVYVVKEMYKEAKDMFEKALRAG----MENGDLFYMLGTVLVKLEQPKL--ALPYL 148
Query: 235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG 294
           +  V+ + N  EA   F   L ++   D A   F      DP +A  + + A +    + 
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF-YNAGVTYAYKE 207
Query: 295 NVDEAIKLIEKAISIDKSCMFA 316
           N ++A+++++KAI I    M A
Sbjct: 208 NREKALEMLDKAIDIQPDHMLA 229

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
           N  EA          Q D+  A EY+ +++ +DP NAS + +      + +G+  +AI+ 
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            +KA+ +D +   A+   G    ++G  ++A++ + KAL L  + A+
Sbjct: 66  YQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 437 GDPTKTIEESEKYGNLE--------NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQ 488
           GD  K IE  +K   L+        N     +   D+ KA     +A ++DPN A ++Y+
Sbjct: 23  GDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYR 82
Query: 489 RGQIYCLFGQYEEALRNLDKTIALNPN 515
           RG  Y   G Y++A+ +  K + L+PN
Sbjct: 83  RGNAYYKQGDYQKAIEDYQKALELDPN 109

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 318
           E+F+ A  ++ ++I ++P NA  + +RA    +  GN   A++  E+AI ID +   AY 
Sbjct: 26  ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 319 TLGTIEVQRGRLEEAVKCFNKALPLARD 346
            +G       +  EAV  + KAL L  D
Sbjct: 85  RMGLALSSLNKHVEAVAYYKKALELDPD 112

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 16/212 (7%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
           L AA     A +    A   DP+   +YY+R  ++   G+ + AL +L K IAL  +F  
Sbjct: 13  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTA 72
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEF-------RNFVDTHSNVVEA---CTLFAQVL- 255
           AR QR    H ++  G  +  E   K+        +   +  S +V+A     L +Q L 
Sbjct: 73  ARLQRG---HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQALD 129
Query: 256 -VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
             D  D+  A  + ++ + V   +A L   RA   ++  G   +AI  ++ A  +     
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKSDNT 188
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
            A+  + T+  Q G  E ++    + L L +D
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
           N  EA          Q D+D A EY+ +++ +DP NA  + +      + +G+ DEAI+ 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRG 328
            +KA+ +D +   A + LG  + ++G
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQG 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	551
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-62
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-56
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-30
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-30
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-41
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-39
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-37
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-30
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-40
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-39
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-31
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-31
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-28
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-28
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-28
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-26
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-24
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-25
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-21
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-25
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-20
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-26
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-26
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-20
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-25
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-24
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-20
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-20
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-24
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-20
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-19
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-20
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-18
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-20
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-19
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-16
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	6e-10
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-08
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	4e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	4e-05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	9e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	8e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	6e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-04

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  211 bits (538), Expect = 7e-62
 Identities = 79/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 7   AQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLS 66
           +    +E   +    PS   + ++   F  +            E      N    L   S
Sbjct: 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN--YDESNEADKELMNGLSNLYKRS 201

Query: 67  KAKRAFEHEDYLTAIRHCTEEIESTSS----NHTKALARLLRATVYIFTSQSTKAIEDLT 122
                   E +  A R   E+++  +         A++           +    A ED+ 
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           + +E   + P++  N++I  A++     +D T+ +   D+A K+D N +  YY RGQ+  
Sbjct: 262 KAIE---LFPRV--NSYIYMALIMADR-NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
           +   Y++A ++ DK   L+P       Q   + ++        + +     F        
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE------NKFDDCETLFSEAKRKFP 369

Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------G 294
              E    FA++L D+ DFD A + ++ +I ++ +   +YV  A L+ +A          
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
           N  EA  L+EKA  +D     A   L  +++Q+  ++EA+  F ++  LAR   E     
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489

Query: 355 SLRDAAIAQMKVCERYNIKKKVS 377
           +  +AA  Q ++     + KK+ 
Sbjct: 490 TFAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  124 bits (314), Expect = 9e-31
 Identities = 63/457 (13%), Positives = 126/457 (27%), Gaps = 86/457 (18%)

Query: 65  LSKAKRAFEHEDYLTAIRHCTEEIESTSS---NHTKALARLLRATVYIFTSQSTKAIEDL 121
           +SK K  F   D  TA    TE     +    +  + L  +     +    +      + 
Sbjct: 123 MSKLKEKFG--DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180

Query: 122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA-------EKVDPNVADSY 174
            +  E          N + +    +  A   FTKA    +E        EK+   +A S 
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240

Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVVHKMIVPGDRERVEQSLK 232
              G    L      A  ++ K I L P    ++  A             DR    +   
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA---------DRNDSTEYYN 291

Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
            F   +   SN         Q+    +++D A + F+++  +DPEN   Y+  A L    
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL-AYR 350

Query: 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352
               D+   L  +A                I   +   ++A+K ++ A+ L         
Sbjct: 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--- 407

Query: 353 IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV 412
           IY      + +  +  R    +               A                      
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENF-----------IEATN-------------------- 436

Query: 413 VMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD 471
                   +   +  L+    +                  ++ +        D  +A   
Sbjct: 437 -----LLEK---ASKLDPRSEQAK-----------IGLAQMKLQQE------DIDEAITL 471

Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
            +E+  +   + +        +    + ++ +R+   
Sbjct: 472 FEESADLARTMEEKLQ--AITFAEAAKVQQRIRSDPV 506

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  116 bits (292), Expect = 6e-28
 Identities = 74/496 (14%), Positives = 145/496 (29%), Gaps = 85/496 (17%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
           L  K  + F ++ Y  AI++    +E    +          +  Y+      K +E  T+
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPV---FYSNLSACYVSVGDLKKVVEMSTK 64

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAE-KVDPNVADS--YYQRGQI 180
            +E   + P       ++RA         F  A  DL       D N A      +R   
Sbjct: 65  ALE---LKPDY-SKVLLRRASA-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR--------------ER 226
                + +E   ++D   A         A+      + +                     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 227 VEQSLKEFRNFVDTHSNVV--------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
            ++S +  +  ++  SN+         +A   F +       F+   +  N   ++  + 
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA---RLFEEQLDKNNEDEKLKEKL 236

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
           A    H  +     + +   A + I+KAI +      +Y  +  I   R    E    F+
Sbjct: 237 AISLEHTGIF-KFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFD 294

Query: 339 KALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENN 398
           KAL L  + +    +Y  R              I +               A K    + 
Sbjct: 295 KALKLDSNNSS---VYYHR--GQM-------NFILQNY-----------DQAGKDF--DK 329

Query: 399 DIIIRPADKGGKTVVMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG 457
              + P          +    Y Q        N ++      ++   +  +   + N   
Sbjct: 330 AKELDP----------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 458 QKHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIY---------CLFGQYEEALRNLD 507
           +     +DF KA    D A +++  +   Y     +               + EA   L+
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439

Query: 508 KTIALNPNFHVARAQR 523
           K   L+P    A+   
Sbjct: 440 KASKLDPRSEQAKIGL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  114 bits (286), Expect = 4e-27
 Identities = 48/394 (12%), Positives = 112/394 (28%), Gaps = 90/394 (22%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
              A +   +G  +    +Y++A++  +  + L  +  V                     
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVF-------------------- 41

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
                        +SN        +   V   D     E   +++ + P+ + + + RA 
Sbjct: 42  -------------YSN-------LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81

Query: 288 LMLQARGNVDEAIKLIEKA---ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
              +  G   +A+  +         + + +         +    +L+E     + A    
Sbjct: 82  A-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP 140

Query: 345 RDEAELSH-IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIR 403
            + +         +   +  +     +    K      N  ++ +   + +   +++  R
Sbjct: 141 TELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR 200

Query: 404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKH--- 460
             +   K        +T+          +E       +  +  EK       +G      
Sbjct: 201 SPESYDK----ADESFTKAA------RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 461 -----AASDFTK--------------------------AFADLDEAEKVDPNVADSYYQR 489
                A  D  K                           +   D+A K+D N +  YY R
Sbjct: 251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310

Query: 490 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           GQ+  +   Y++A ++ DK   L+P       Q 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 95.2 bits (237), Expect = 6e-21
 Identities = 48/392 (12%), Positives = 91/392 (23%), Gaps = 89/392 (22%)

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
              A   +          +  A    + A ++  +    Y      Y   G  ++ +   
Sbjct: 5   YALALKDKGNQ-FFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            K + L P++     +R                                        A  
Sbjct: 63  TKALELKPDYSKVLLRR----------------------------------------ASA 82

Query: 255 LVDQEDFDGAEEYFNR-SIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKS 312
                 F  A    +  S+  D  +AS+       L  QA   + E    I+ A +    
Sbjct: 83  NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNI 372
                      + +      ++  F                               +  +
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIF---------------------------KPEL 175

Query: 373 KKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY 432
                  S    K     +  L + +      AD+           +T+          +
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADE----------SFTKAA------RLF 219

Query: 433 EIIPGDPTKTIEESEKYGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQ 491
           E       +  +  EK       +G       D   A  D+ +A ++ P   +SY     
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278

Query: 492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           I        E     DK + L+ N       R
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 11/66 (16%), Positives = 24/66 (36%)

Query: 451 NLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
                  +     +F +A   L++A K+DP    +     Q+       +EA+   +++ 
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476

Query: 511 ALNPNF 516
            L    
Sbjct: 477 DLARTM 482

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  197 bits (503), Expect = 1e-56
 Identities = 73/391 (18%), Positives = 149/391 (38%), Gaps = 38/391 (9%)

Query: 8   QHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELD---- 63
           ++  ++  + S   PS   + ++   F +   +     S+  +      +++ +      
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207

Query: 64  ----LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIE 119
               L++        + Y + +   T +          ALA       +   +    A  
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPL---RENAALALCYTGIFHFLKNNLLDAQV 264

Query: 120 DLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 179
            L + +    + P    N++I  A+  L    +  + F    +A  ++P    +YY RGQ
Sbjct: 265 LLQESIN---LHPT--PNSYIFLALT-LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318

Query: 180 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239
           +Y +   Y+ A  +  K  +LNP       Q   +++K        +  +S   F     
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ------GKFTESEAFFNETKL 372

Query: 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR------ 293
               + E  T FA++L D+ DFD A + ++ + R++     ++V    L+ +A       
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432

Query: 294 ---------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
                       + AIKL+ KA  +D     A   L  +++Q  +++EA++ F  +  LA
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

Query: 345 RDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
           R   E     +  +AA  Q ++     I  K
Sbjct: 493 RTMDEKLQATTFAEAAKIQKRLRADPIISAK 523

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  122 bits (308), Expect = 7e-30
 Identities = 50/390 (12%), Positives = 105/390 (26%), Gaps = 85/390 (21%)

Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
           G +     ++ +   L+P+   A A +                                 
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLK------------------------------- 29

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
                         ++F+ A +Y+  +I +DP     Y + +     + G++++ I+   
Sbjct: 30  -----NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTT 83

Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA-----LPLARDEAELSHIYSLRDA 359
           KA+ I      A     +     G   +A+   +          A  E  L    + +  
Sbjct: 84  KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM 143

Query: 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR-------ENNDIIIRPADKGGKTV 412
            +    + +      +V P + ++     +    L         N D          + +
Sbjct: 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203

Query: 413 VMDKADYTQKMTSILNSN--DYEIIPGDPTKTIEESEKY-------GNLENESGQKHAA- 462
                +       +L  +   Y  +    T      E         G           A 
Sbjct: 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263

Query: 463 --------------------------SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
                                      +  + F    +A  ++P    +YY RGQ+Y + 
Sbjct: 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323

Query: 497 GQYEEALRNLDKTIALNPNFHVARAQRHFV 526
             Y+ A  +  K  +LNP       Q   +
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACL 353

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  122 bits (307), Expect = 9e-30
 Identities = 54/416 (12%), Positives = 124/416 (29%), Gaps = 70/416 (16%)

Query: 103 LRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE 162
           L  +    +S    A   L+  ++            ++    +   +   +    +    
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQR---LYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234

Query: 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVVHKMIV 220
            + +  N A +    G  + L     +A   L ++I L+P    ++  A    +      
Sbjct: 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLA----LTLA--- 287

Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
             D+E  ++  K F+  VD +           Q+    +D+  A+E F ++  ++PEN  
Sbjct: 288 --DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
            Y+  A L L  +G   E+     +      +          I   RG  + A+K ++ A
Sbjct: 346 PYIQLACL-LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404

Query: 341 LPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDI 400
             L   + +   I+      I +  +  R + +       +        AIK        
Sbjct: 405 KRLEEVQEK---IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA----AIK-------- 449

Query: 401 IIRPADKGGKTVVMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459
                              T+   +  L+    +                  L+ +  + 
Sbjct: 450 -----------------LLTK---ACELDPRSEQAK-----------IGLAQLKLQMEK- 477

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
                  +A    +++  +   + +        +    + ++ LR      A    
Sbjct: 478 -----IDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMEL 526

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 53/442 (11%), Positives = 109/442 (24%), Gaps = 104/442 (23%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
               D+ QL   +    +        R       A +F +A      A ++DPN    Y 
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNH-FFTAKNFNEAIKYYQYAIELDPNEPVFYS 63

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
                Y   G  E+ +    K + + P+   A  +R                        
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR------------------------ 99

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASLYVHRAMLMLQARG 294
                           A       +F  A    +  S+  D + AS+        +  R 
Sbjct: 100 ----------------ASANESLGNFTDAMFDLSVLSLNGDFDGASIE------PMLERN 137

Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-- 352
              +A+K++ + +S D            +      L      F+  L ++      ++  
Sbjct: 138 LNKQAMKVLNENLSKD------EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191

Query: 353 IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV 412
            Y+L   A+ ++               +++        +       D  +R         
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS-LLSAN--TVDDPLRE-------- 240

Query: 413 VMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKY------GNLENESGQKHAA-SD 464
             + A             N+         ++I                 +          
Sbjct: 241 --NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKF 298

Query: 465 FTKA------FAD--------------LDEAEK-------VDPNVADSYYQRGQIYCLFG 497
           F KA      +                   A++       ++P     Y Q   +    G
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358

Query: 498 QYEEALRNLDKTIALNPNFHVA 519
           ++ E+    ++T    P     
Sbjct: 359 KFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 18/230 (7%)

Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
           R  +Y        A ED  +      ++P+  V  +I+ A + L+    FT++ A  +E 
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQS---LNPEN-VYPYIQLACL-LYKQGKFTESEAFFNET 370

Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG- 222
           +   P + +      +I    G ++ A++  D    L             ++ K  +   
Sbjct: 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430

Query: 223 ---------DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
                    D E+   ++K      +      +A    AQ+ +  E  D A E F  S  
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490

Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
           +                     + + ++      +  +  +  Y   G +
Sbjct: 491 LARTMDEKLQATT---FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            FT++ A  +E +   P + +      +I    G ++ A++  D    L       
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 11/75 (14%), Positives = 26/75 (34%)

Query: 442 TIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE 501
            I ++       ++   +     F  A   L +A ++DP    +     Q+     + +E
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480

Query: 502 ALRNLDKTIALNPNF 516
           A+   + +  L    
Sbjct: 481 AIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 16/76 (21%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF----------------GQYEEALRNLD 507
           DF  A    D A++++      +   G +                     ++  A++ L 
Sbjct: 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452

Query: 508 KTIALNPNFHVARAQR 523
           K   L+P    A+   
Sbjct: 453 KACELDPRSEQAKIGL 468

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  153 bits (388), Expect = 7e-41
 Identities = 53/449 (11%), Positives = 106/449 (23%), Gaps = 56/449 (12%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +    T       +A               + +  L Q      + P+ 
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAHG---LTPE- 138

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +V A          A          L +A  + P    +    G         +  L  L
Sbjct: 139 QVVAIASHDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P   VA A        +      E V++ L             V A       
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASNGGG 251

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P+        +    QA   V   + ++ +A  +    +
Sbjct: 252 KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG-KQALETVQRLLPVLCQAHGLTPQQV 310

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----Y 370
            A  + G  +     ++  +    +A  L   +       +  D     ++  +R     
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV---AIASHDGGKQALETVQRLLPVL 367

Query: 371 NIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430
                ++P       +     + L     ++                   Q         
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLL---------------PVLCQ--------- 403

Query: 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRG 490
            + + P              +     G K A     +    L +A  + P    +    G
Sbjct: 404 AHGLTPEQV-------VAIASH---DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
                       L   D  +A   N H+ 
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  150 bits (380), Expect = 1e-39
 Identities = 50/430 (11%), Positives = 103/430 (23%), Gaps = 53/430 (12%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
            +A               + +  L Q      + P+ +V A          A     +  
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHG---LTPQ-QVVAIASHDGG-KQALETVQRLL 126

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
             L +A  + P    +              +  L  L +   L P   VA A        
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQA 186

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
           +      E V++ L             V A           E          ++  + P+
Sbjct: 187 L------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
                        QA   V   + ++ +A  +    + A  +    +     ++  +   
Sbjct: 241 QVVAIASNGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 338 NKALPLARDEAELSHIYSLRDAAIAQMKVCER----YNIKKKVSPRSQNITKNEKLAIKQ 393
            +A  L   +       +        ++  +R          ++P+      +     + 
Sbjct: 300 CQAHGLTPQQVV---AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356

Query: 394 LRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE 453
           L     ++                   Q          + + P       E+     +  
Sbjct: 357 LETVQRLL---------------PVLCQ---------AHGLTP-------EQVVAIASN- 384

Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
              G K A     +    L +A  + P    +              +  L  L +   L 
Sbjct: 385 --GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 442

Query: 514 PNFHVARAQR 523
           P   VA A  
Sbjct: 443 PQQVVAIASN 452

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  144 bits (364), Expect = 1e-37
 Identities = 50/415 (12%), Positives = 97/415 (23%), Gaps = 48/415 (11%)

Query: 113 QSTKAIEDLTQLVEDTSVDPKIK-VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA 171
            + +A+      +    ++   + V A          A     +    L +A  + P   
Sbjct: 48  TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPQQV 106

Query: 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231
            +              +  L  L +   L P   VA A        +      E V+  L
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL------ETVQALL 160

Query: 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291
                        V A           E          ++  + P+             Q
Sbjct: 161 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG-KQ 219

Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
           A   V   + ++ +A  +    + A  + G  +     ++  +    +A  L   +    
Sbjct: 220 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA- 278

Query: 352 HIYSLRDAAIAQMKVCER---YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKG 408
            I S      A   V            ++P+      +     + L     ++       
Sbjct: 279 -IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL------- 330

Query: 409 GKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKA 468
                       Q     L                       + +     K A     + 
Sbjct: 331 --------PVLCQAHG--LTPQQVVA--------------IASHDGG---KQALETVQRL 363

Query: 469 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
              L +A  + P    +    G         +  L  L +   L P   VA A  
Sbjct: 364 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  122 bits (309), Expect = 3e-30
 Identities = 36/278 (12%), Positives = 72/278 (25%), Gaps = 15/278 (5%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +     +     A+A               + +  L Q      + P+ 
Sbjct: 222 ETVQRLLPVLCQAHG-LTPQQVVAIAS--NGGGKQALETVQRLLPVLCQAHG---LTPQ- 274

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +V A    +     A     +    L +A  + P    +    G         +  L  L
Sbjct: 275 QVVAIASNSGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P   VA A        +      E V++ L             V A       
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQAL------ETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + PE             QA   V   + ++ +A  +    +
Sbjct: 388 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPQQV 446

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352
            A  + G        +   +   + AL    ++  ++ 
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 484

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  107 bits (269), Expect = 5e-25
 Identities = 39/360 (10%), Positives = 82/360 (22%), Gaps = 48/360 (13%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQ 229
              ++Q      L      A       + L+    +  A+R  V     +          
Sbjct: 4   HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63

Query: 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289
            L      V   ++               E          ++  + P+            
Sbjct: 64  PLNLTPEQVVAIAS-------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG- 115

Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            QA   V   + ++ +A  +    + A  +    +     ++  +    +A  L  ++  
Sbjct: 116 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

Query: 350 LSHIYSLRDAAIAQMKVCE---RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD 406
              I S      A   V            ++P+      +     + L     ++     
Sbjct: 176 A--IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL----- 228

Query: 407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFT 466
                         Q          + + P              +     G K A     
Sbjct: 229 ----------PVLCQ---------AHGLTPQQV-------VAIASN---GGGKQALETVQ 259

Query: 467 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
           +    L +A  + P    +              +  L  L +   L P   VA A     
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 7/196 (3%)

Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
           T A        ++D        +RG +  +   +          + L P   VA A    
Sbjct: 21  TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80

Query: 214 VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
               +      E V++ L             V A           E          ++  
Sbjct: 81  GKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
           + PE             QA   V   + ++ +A  +    + A  + G  +     ++  
Sbjct: 135 LTPEQVVAIASHDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 193

Query: 334 VKCFNKALPLARDEAE 349
           +    +A  L   +  
Sbjct: 194 LPVLCQAHGLTPQQVV 209

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  148 bits (375), Expect = 5e-40
 Identities = 67/403 (16%), Positives = 135/403 (33%), Gaps = 74/403 (18%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
           V  H++     L AA     A +    A   DP+   +YY+R  ++   G+ + AL +L 
Sbjct: 3   VEKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSN----- 243
           K IAL  +F  AR QR  ++ K        +++++  +F+       +  +         
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115

Query: 244 ---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300
               ++     A    D  D+  A  + ++ + V   +A L   RA       G   +AI
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC-FIKEGEPRKAI 174

Query: 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360
             ++ A  +      A+  + T+  Q G  E ++    + L L +D       ++     
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---CFAHYKQV 231

Query: 361 IAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYT 420
               K+ E      +              A                          + Y 
Sbjct: 232 KKLNKLIESAEELIR--------DGRYTDAT-------------------------SKYE 258

Query: 421 QKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP 480
             M         +  P     T+   E+  +  ++  +        +A     E  +++P
Sbjct: 259 SVM---------KTEPSVAEYTVRSKERICHCFSKDEK------PVEAIRICSEVLQMEP 303

Query: 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           +  ++   R + Y +   Y+EA+++ +     N N    R   
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  122 bits (309), Expect = 6e-31
 Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 50/387 (12%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            A+      V+    DP     A+ +RA V   A      A  DL +   +  +   +  
Sbjct: 21  DALSQFHAAVD---GDPD-NYIAYYRRATV-FLAMGKSKAALPDLTKVIALKMDFTAARL 75

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
           QRG +    G+ +EA  +  K +  NP+    +                 + ++  +   
Sbjct: 76  QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE----------SQLVKADEMQRLRS 125

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
                           A    D  D+  A  + ++ + V   +A L   RA       G 
Sbjct: 126 Q---------------ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC-FIKEGE 169

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
             +AI  ++ A  +      A+  + T+  Q G  E ++    + L L +D       ++
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---CFA 226

Query: 356 LRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMD 415
                    K+ E      +              A  +      +   P+          
Sbjct: 227 HYKQVKKLNKLIESAEELIR--------DGRYTDATSKYES--VMKTEPSVAEYTVRS-- 274

Query: 416 KADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDE 474
                +                  ++ ++      N   +  +       + +A  D + 
Sbjct: 275 ---KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEE 501
           A++ + N         +   L  Q ++
Sbjct: 332 AQEHNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  120 bits (304), Expect = 3e-30
 Identities = 44/308 (14%), Positives = 99/308 (32%), Gaps = 44/308 (14%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
            L   K+         A+      ++    N    +A   RATV++   +S  A+ DLT+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
           ++    +       A ++R  + L       +A  D  +  K +P+  +      Q+   
Sbjct: 63  VIA---LKMDF-TAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 184 F---------------GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
                             Y  A+  LDK + +       R  R     K           
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE------GEPR 171

Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
           +++ + +      S+  EA    + +     D + +       +++D ++   + H   +
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

Query: 289 -----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEA 333
                       L   G   +A    E  +  +    +  + + E +     +  +  EA
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 334 VKCFNKAL 341
           ++  ++ L
Sbjct: 292 IRICSEVL 299

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 47/301 (15%)

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
           VE      + L+       A   F+ ++  DP+N   Y  RA +   A G    A+  + 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLT 61

Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364
           K I++      A    G + +++G+L+EA   F K L     E E         + + + 
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAE-SQLVKA 117

Query: 365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT 424
              +R   +   +    + T     AI  L  +  + +              A+  +   
Sbjct: 118 DEMQRLRSQALDAFDGADYTA----AITFL--DKILEVCV----------WDAELRELRA 161

Query: 425 SIL-NSNDYEIIPGDPTKTIEESEKY-------GNLENESGQKHAASDFTKAFADLDEAE 476
                  +      D     +              L  + G      D   + +++ E  
Sbjct: 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG------DHELSLSEVRECL 215

Query: 477 KVDPNVADSYYQRGQIYCLF------------GQYEEALRNLDKTIALNPNFHVARAQRH 524
           K+D +    +    Q+  L             G+Y +A    +  +   P+      +  
Sbjct: 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275

Query: 525 F 525
            
Sbjct: 276 E 276

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 41/260 (15%)

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
           +   ++      L A G + +A+     A+  D     AY    T+ +  G+ + A+   
Sbjct: 2   DVEKHLELG-KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60

Query: 338 NKALPLARDEAELSHIYSLR----------DAAIAQMKVCERYNIKKKVSPRSQNITKNE 387
            K + L   + + +     R          D A         +    K +P  Q   + E
Sbjct: 61  TKVIAL---KMDFTAARLQRGHLLLKQGKLDEAEDD------FKKVLKSNPSEQEEKEAE 111

Query: 388 KLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESE 447
              +K                      +      +     +  DY        K +E   
Sbjct: 112 SQLVK--------------------ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151

Query: 448 KYGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
               L     +      +  KA +DL  A K+  +  +++Y+   +Y   G +E +L  +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 507 DKTIALNPNFHVARAQRHFV 526
            + + L+ +     A    V
Sbjct: 212 RECLKLDQDHKRCFAHYKQV 231

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  149 bits (377), Expect = 1e-39
 Identities = 67/436 (15%), Positives = 140/436 (32%), Gaps = 89/436 (20%)

Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
                   +   +++ D               V  H++     L AA     A +    A
Sbjct: 9   SGVDLGTENLYFQSMAD---------------VEKHLELGKKLL-AAGQLADALSQFHAA 52

Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223
              DP+   +YY+R  ++   G+ + AL +L K I L  +F  AR QR  ++ K      
Sbjct: 53  VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ----- 107

Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLF---------------AQVLVDQEDFDGAEEYF 268
             +++++  +F+  + ++ +  E                    A       D+  A  + 
Sbjct: 108 -GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166

Query: 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
           ++ + V   +A L   RA       G   +AI  ++ A  +      A+  + T+  Q G
Sbjct: 167 DKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225

Query: 329 RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEK 388
             E ++    + L L +D       ++         K+ E                    
Sbjct: 226 DHELSLSEVRECLKLDQDHKR---CFAHYKQVKKLNKLIESAE----------------- 265

Query: 389 LAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEK 448
             + +     D                 + Y   M         +  P     T+   E+
Sbjct: 266 -ELIRDGRYTDAT---------------SKYESVM---------KTEPSIAEYTVRSKER 300

Query: 449 YGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
             +  ++  +        +A     E  +++P+  ++   R + Y +   Y+EA+++ + 
Sbjct: 301 ICHCFSKDEK------PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 509 TIALNPNFHVARAQRH 524
               N N    R    
Sbjct: 355 AQEHNENDQQIREGLE 370

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  125 bits (317), Expect = 2e-31
 Identities = 66/476 (13%), Positives = 147/476 (30%), Gaps = 105/476 (22%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
            L   K+         A+      ++    N    +A   RATV++   +S  A+ DLT+
Sbjct: 29  HLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD----------- 172
           +++   +       A ++R  + L       +A  D  +  K +P+  +           
Sbjct: 86  VIQ---LKMDF-TAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

Query: 173 ----SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
                   +       G Y  A+  LDK + +       R  R     K           
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE------GEPR 194

Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
           +++ + +      ++  EA    + +     D + +       +++D ++   + H   +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

Query: 289 -----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEA 333
                       L   G   +A    E  +  +    +  + + E +     +  +  EA
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314

Query: 334 VKCFNKALPLARDEAELSHIYSLRDAAIAQMKV------CERYNIKKKVSPRSQNITKNE 387
           ++  ++ L +   E +  +    R  A A +         + Y   ++ +   Q I +  
Sbjct: 315 IRVCSEVLQM---EPDNVNALKDR--AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369

Query: 388 KLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESE 447
           + A + L+++                  K DY + +    N+   EII            
Sbjct: 370 EKAQRLLKQS-----------------QKRDYYKILGVKRNAKKQEII------------ 400

Query: 448 KYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
                              KA+  L  A +  P+   +  ++ +    F     A 
Sbjct: 401 -------------------KAYRKL--ALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 91.3 bits (227), Expect = 7e-20
 Identities = 45/369 (12%), Positives = 100/369 (27%), Gaps = 86/369 (23%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
              ++  G        Y +++ +++K + L                              
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLEL------------------------------ 32

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
                                 + L+       A   F+ ++  DP+N   Y  RA +  
Sbjct: 33  ---------------------GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-F 70

Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
            A G    A+  + K I +      A    G + +++G+L+EA   F K L     E E 
Sbjct: 71  LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130

Query: 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK 410
               S    +    ++  +              + +   AI  L  +  + +        
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFG--------SGDYTAAIAFL--DKILEVCV------ 174

Query: 411 TVVMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKA 468
                 A+    +    +   +      D     +          +     +   D   +
Sbjct: 175 ----WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230

Query: 469 FADLDEAEKVDPNVADSYYQRGQIYCLF------------GQYEEALRNLDKTIALNPNF 516
            +++ E  K+D +    +    Q+  L             G+Y +A    +  +   P+ 
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290

Query: 517 HVARAQRHF 525
                +   
Sbjct: 291 AEYTVRSKE 299

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 33/196 (16%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
           T A      +++      +  V +  +             +A     E  +++P+  ++ 
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHC-FSKDEKPVEAIRVCSEVLQMEPDNVNAL 332

Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF 234
             R + Y +   Y+EA+++ +     N N    R                E+ ++ LK+ 
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG-------------LEKAQRLLKQS 379

Query: 235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE-YFNRSIRVDPENASLYVHRAMLMLQAR 293
           +          +        +          + Y   +++  P+N            + +
Sbjct: 380 Q----------KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE--------EEK 421

Query: 294 GNVDEAIKLIEKAISI 309
              ++    I  A  +
Sbjct: 422 KKAEKKFIDIAAAKEV 437

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  133 bits (336), Expect = 5e-33
 Identities = 54/466 (11%), Positives = 113/466 (24%), Gaps = 41/466 (8%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +    T       +A               + +  L Q      + P  
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQ---VVAIASHGGGKQALETVQRLLPVLCQAHG---LTPD- 326

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +V A          A     +    L +A  + P+   +    G         +  L  L
Sbjct: 327 QVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P+  VA A               E V++ L           + V A       
Sbjct: 386 CQAHGLTPDQVVAIASNGGK-------QALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P              QA   V + + ++ +A  +    +
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHD-GGKQALETVQQLLPVLCQAHGLTPDQV 497

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
            A  +    +     ++  +    +A  L  D+     I S      A   V     +  
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQALETVQRLLPVLC 555

Query: 375 KV------SPRSQNITKNEKLAIKQLRE-----NNDIIIRPADKGGKTVVMDKADYTQKM 423
           +          +       K A++ ++           +             +       
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ----------VQVVAIASN 605

Query: 424 TSILNS-NDYEIIPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN 481
                +    + +     +       +   + +  G K A     +    L +A  + P+
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665

Query: 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
              +    G         +  L  L +   L     VA A  +   
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGK 711

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  127 bits (319), Expect = 8e-31
 Identities = 50/423 (11%), Positives = 110/423 (26%), Gaps = 29/423 (6%)

Query: 112 SQSTKAIEDLTQLVEDTSVDPKIK-VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
             + +A+      +    ++     V A          A     +    L +A  + P  
Sbjct: 167 VTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG-KQALETVQRLLPVLCQAHGLTPAQ 225

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
             +              +  L  L +   L P+  VA A        +      E V++ 
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL------ETVQRL 279

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
           L           + V A           E          ++  + P+             
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD-GGK 338

Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE- 349
           QA   V   + ++ +A  +    + A  + G  +     ++  +    +A  L  D+   
Sbjct: 339 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

Query: 350 ---LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE-----NNDII 401
                   +L         +C+ + +       +       K A++ ++           
Sbjct: 399 IASNGGKQALETVQRLLPVLCQAHGLTPD-QVVAIASHDGGKQALETVQRLLPVLCQTHG 457

Query: 402 IRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN-LENESGQKH 460
           + PA                           + +     +    +      + +  G K 
Sbjct: 458 LTPA---------QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           A +   +    L +A  + P+   +    G         +  L  L +   L P+  VA 
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568

Query: 521 AQR 523
           A  
Sbjct: 569 ASN 571

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  119 bits (299), Expect = 2e-28
 Identities = 55/449 (12%), Positives = 114/449 (25%), Gaps = 48/449 (10%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +          + +A           +   + +  L Q    T      
Sbjct: 477 ETVQQLLPVLCQAHGL---TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ--- 530

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
            V A          A     +    L +A  + P+   +    G         +  L  L
Sbjct: 531 -VVAIASNGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L     VA A        +      E V++ L             V A       
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P+             QA   V   + ++ +A  + +  +
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG-KQALETVQRLLPVLCQAHGLTQEQV 701

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
            A  +    +     ++  +    +A  L  D+       +        +   E      
Sbjct: 702 VAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGKQAL---ETVQRLL 755

Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
            V  ++  +T  + +AI             A   G        +  Q++  +L   D+ +
Sbjct: 756 PVLCQAHGLTPAQVVAI-------------ASNIG---GKQALETVQRLLPVLC-QDHGL 798

Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
                        +   + +  G K A     +    L +A  +  +   +         
Sbjct: 799 TL----------AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848

Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
                +  L  L +   L P+  VA A  
Sbjct: 849 ALETVQRLLPVLCQDHGLTPDQVVAIASN 877

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  118 bits (296), Expect = 5e-28
 Identities = 55/449 (12%), Positives = 113/449 (25%), Gaps = 49/449 (10%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +    T       +A               + +  L Q      + P  
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHG---LTPD- 394

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +V A          A     +    L +A  + P+   +              +  L  L
Sbjct: 395 QVVAIASNGGKQ--ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +T  L P   VA A        +      E V+Q L           + V A       
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQAL------ETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
                          ++  + P+             QA   V   + ++ +A  +    +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG-KQALETVQRLLPVLCQAHGLTPDQV 565

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
            A  + G  +     ++  +    +A  L + +       +        +   E      
Sbjct: 566 VAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV---AIASNIGGKQAL---ETVQRLL 619

Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
            V  ++  +T  + +AI     ++D   +  +   + +        Q     L  +    
Sbjct: 620 PVLCQAHGLTPAQVVAIA----SHDGGKQALETVQRLL----PVLCQAHG--LTPDQVVA 669

Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
                            + +  G K A     +    L +A  +      +         
Sbjct: 670 -----------------IASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQ 712

Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
                +  L  L +   L P+  VA A  
Sbjct: 713 ALETVQRLLPVLCQAHGLTPDQVVAIASN 741

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  117 bits (294), Expect = 9e-28
 Identities = 50/462 (10%), Positives = 112/462 (24%), Gaps = 41/462 (8%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +            +A               + +  L Q      + P  
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQ---VVAIASNIGGKQALETVQRLLPVLCQAHG---LTPD- 292

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
           +V A          A     +    L +A  + P+   +              +  L  L
Sbjct: 293 QVVAIASHGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P+  VA A        +      E V++ L           + V A       
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P+             QA   V   + ++ +   +  + +
Sbjct: 406 Q-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGG-KQALETVQRLLPVLCQTHGLTPAQV 463

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----Y 370
            A  +    +     +++ +    +A  L  D+       +        +   +R     
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV---AIASNIGGKQALATVQRLLPVL 520

Query: 371 NIKKKVSP---RSQNITKNEKLAIKQLRE-----NNDIIIRPADKGGKTVVMDKADYTQK 422
                ++P    +       K A++ ++           + P                  
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV---------VAIASN 571

Query: 423 MTSILNSNDYEIIPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN 481
                     + +     +       +   + +  G K A     +    L +A  + P 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
              +              +  L  L +   L P+  VA A  
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  112 bits (280), Expect = 6e-26
 Identities = 59/470 (12%), Positives = 120/470 (25%), Gaps = 54/470 (11%)

Query: 68  AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRAT----VYIFTSQS-TKAIEDLT 122
               F H   + A+      + + +  +   +  L  AT    V +    S  +A+E L 
Sbjct: 82  VGHGFTHAH-IVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALL 140

Query: 123 QLVEDTS-----VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177
               +       +D    V    +  V  + A      A         + P    +    
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTG--APLNLTPAQVVAIASN 198

Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237
                     +  L  L +   L P   VA A        +      E +++ L      
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL------ETMQRLLPVLCQA 252

Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
                + V A           E          ++  + P+             QA   V 
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG-KQALETVQ 311

Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
             + ++ +A  +    + A  +    +     ++  +    +A  L  D+       +  
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASN 368

Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417
                 +   E       V  ++  +T ++ +AI        +         +TV     
Sbjct: 369 GGGKQAL---ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL---------ETVQRLLP 416

Query: 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEK 477
              Q     L  +                     + +  G K A     +    L +   
Sbjct: 417 VLCQAHG--LTPDQVVA-----------------IASHDGGKQALETVQRLLPVLCQTHG 457

Query: 478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
           + P    +              ++ L  L +   L P+  VA A      
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  106 bits (266), Expect = 3e-24
 Identities = 53/451 (11%), Positives = 102/451 (22%), Gaps = 48/451 (10%)

Query: 73  EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
                   +    +    T       +A               + +  L Q    T    
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 565

Query: 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192
                A          A     +    L +A  +      +              +  L 
Sbjct: 566 ----VAIASNGGG-KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620

Query: 193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252
            L +   L P   VA A        +      E V++ L           + V A     
Sbjct: 621 VLCQAHGLTPAQVVAIASHDGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNG 674

Query: 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
                 E          ++  +  E             QA   V   + ++ +A  +   
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTPD 733

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNI 372
            + A  + G  +     ++  +    +A  L   +     I S      A     E    
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA--IASNIGGKQAL----ETVQR 787

Query: 373 KKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY 432
              V  +   +T  + +AI         +        +TV        Q          +
Sbjct: 788 LLPVLCQDHGLTLAQVVAIASNIGGKQAL--------ETVQRLLPVLCQ---------AH 830

Query: 433 EIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI 492
            +                 + +  G K A     +    L +   + P+   +       
Sbjct: 831 GLTQDQVVA----------IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG 880

Query: 493 YCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
                  +  L  L +   L  +  VA A  
Sbjct: 881 KQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  104 bits (261), Expect = 1e-23
 Identities = 55/449 (12%), Positives = 111/449 (24%), Gaps = 46/449 (10%)

Query: 80  AIRHCTEEIESTSSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTSVDPKIKVNA 138
                  ++ ST + H +AL        +I   SQ   A+  +    +          + 
Sbjct: 62  QQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHE 121

Query: 139 HIKRAVVHLHAASD----FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
            I         A       T A        ++D        +RG +  +   +       
Sbjct: 122 DIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALT 181

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
              + L P   VA A  +     +      E V++ L             V A       
Sbjct: 182 GAPLNLTPAQVVAIASNNGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGG 235

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P+             QA   V   + ++ +A  +    +
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGG-KQALETVQRLLPVLCQAHGLTPDQV 294

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
            A  + G  +     ++  +    +A  L  D+       +  D                
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASHDGG-------------- 337

Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
                 Q +   ++  +  L +     + P                            + 
Sbjct: 338 -----KQALETVQR-LLPVLCQ--AHGLTPDQVVA---------IASNGGGKQALETVQR 380

Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
           +     +    +         +G K A     +    L +A  + P+   +         
Sbjct: 381 LLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440

Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
                +  L  L +T  L P   VA A  
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASH 469

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  104 bits (260), Expect = 2e-23
 Identities = 55/450 (12%), Positives = 112/450 (24%), Gaps = 51/450 (11%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +          + +A               + +  L Q    T      
Sbjct: 579 ETVQRLLPVLCQAHGL---TQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ--- 632

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
            V A          A     +    L +A  + P+   +    G         +  L  L
Sbjct: 633 -VVAIASHDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 690

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L     VA A  +     +      E V++ L           + V A       
Sbjct: 691 CQAHGLTQEQVVAIASNNGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  + P              QA   V   + ++ +   +  + +
Sbjct: 745 KQALETVQRLLPVLCQAHGLTPAQVVAIASNI-GGKQALETVQRLLPVLCQDHGLTLAQV 803

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA-AIAQMKVCERYNIK 373
            A              ++A++   + LP+      L+    +  A  I   +  E     
Sbjct: 804 VAI-------ASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRL 856

Query: 374 KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE 433
             V  +   +T ++ +AI         +                +  Q++  +L      
Sbjct: 857 LPVLCQDHGLTPDQVVAIASNIGGKQAL----------------ETVQRLLPVL------ 894

Query: 434 IIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493
                  +    +         +G K A     +    L +   + P+   +        
Sbjct: 895 ------CQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948

Query: 494 CLFGQYEEALRNLDKTIALNPNFHVARAQR 523
                 +  L  L +   L PN  VA A  
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVAIASN 978

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  103 bits (258), Expect = 3e-23
 Identities = 50/451 (11%), Positives = 101/451 (22%), Gaps = 50/451 (11%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +    T       +A               + +  L Q    T      
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ--- 462

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
            V A          A     +    L +A  + P+   +              +  L  L
Sbjct: 463 -VVAIASHDGG-KQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P+  VA A        +      E V++ L           + V A       
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          ++  +                QA   V   + ++ +A  +  + +
Sbjct: 575 KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG-KQALETVQRLLPVLCQAHGLTPAQV 633

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
            A  +    +     ++  +    +A  L  D+     I S      A     E      
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQAL----ETV---- 683

Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
                        +  +  L +     +                              + 
Sbjct: 684 -------------QRLLPVLCQ--AHGLTQEQVVA---------IASNNGGKQALETVQR 719

Query: 435 IPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493
           +     +      ++   + +  G K A     +    L +A  + P    +        
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779

Query: 494 CLFGQYEEALRNLDKTIALNPNFHVARAQRH 524
                 +  L  L +   L     VA A   
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVAIASNI 810

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 8e-08
 Identities = 32/267 (11%), Positives = 66/267 (24%), Gaps = 17/267 (6%)

Query: 75  EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
           E     +    +    T +     +A               + +  L Q    T      
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQ---VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ--- 802

Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
            V A          A     +    L +A  +  +   +              +  L  L
Sbjct: 803 -VVAIASNIG-GKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860

Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
            +   L P+  VA A        +      E V++ L           + V A       
Sbjct: 861 CQDHGLTPDQVVAIASNIGGKQAL------ETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
               E          +   + P+        +    QA   V   + ++ +   +  + +
Sbjct: 915 Q-ALETVQRLLPVLCQDHGLTPDQVVAIASNSGG-KQALETVQRLLPVLCQDHGLTPNQV 972

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKAL 341
            A  + G  +     +   +   + AL
Sbjct: 973 VAIASNG-GKQALESIVAQLSRPDPAL 998

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  127 bits (322), Expect = 2e-32
 Identities = 48/252 (19%), Positives = 109/252 (43%), Gaps = 12/252 (4%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
              R     +     +  +A     + +E     P     A      V  +A  +   A 
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNF-AVAWSNLGCV-FNAQGEIWLAI 189

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
              ++A  +DPN  D+Y   G +      ++ A+    + ++L+PN  V       V ++
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
                    ++ ++  +R  ++   +  +A    A  L ++     AE+ +N ++R+ P 
Sbjct: 250 Q------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
           +A    + A +  + +GN++EA++L  KA+ +      A+  L ++  Q+G+L+EA+  +
Sbjct: 304 HADSLNNLANI-KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 338 NKALPLARDEAE 349
            +A+ ++   A+
Sbjct: 363 KEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  126 bits (320), Expect = 3e-32
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 15/277 (5%)

Query: 73  EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
           E      AI H    +             +  A   +       A++     ++    +P
Sbjct: 79  ERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNP 132

Query: 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192
            +          + L A     +A A   +A +  PN A ++   G ++   G+   A+ 
Sbjct: 133 DL-YCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

Query: 193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252
           + +K + L+PNF  A      V+ +          ++++  +   +    N        A
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEA------RIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
            V  +Q   D A + + R+I + P     Y + A   L+ +G+V EA      A+ +  +
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA-LKEKGSVAEAEDCYNTALRLCPT 303

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
              +   L  I+ ++G +EEAV+ + KAL +  + A 
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  125 bits (317), Expect = 7e-32
 Identities = 38/210 (18%), Positives = 85/210 (40%), Gaps = 8/210 (3%)

Query: 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199
           ++ A    + A DF  A     +  + +P+          I+    + + +       I 
Sbjct: 3   MELAHRE-YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259
            NP    A +    V  +        +++++++ +R+ +    + ++     A  LV   
Sbjct: 62  QNPLLAEAYSNLGNVYKER------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115

Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319
           D +GA + +  +++ +P+   +      L L+A G ++EA     KAI    +   A+  
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           LG +   +G +  A+  F KA+ L  +  +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  108 bits (271), Expect = 1e-25
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 12/213 (5%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            AI    + V    +DP   ++A+I    V L  A  F +A A    A  + PN A  + 
Sbjct: 187 LAIHHFEKAVT---LDPNF-LDAYINLGNV-LKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
               +Y   G  + A+    + I L P+F  A       + +         V ++   + 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK------GSVAEAEDCYN 295

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
             +       ++    A +  +Q + + A   + +++ V PE A+ + + A + LQ +G 
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGK 354

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
           + EA+   ++AI I  +   AY  +G    +  
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (255), Expect = 2e-23
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE 233
             +        G +E A R+  +     P+          +  +        R+++S   
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC------RRLDRSAHF 55

Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
               +  +  + EA +    V  ++     A E++  ++R+ P+    Y++ A   L A 
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA-LVAA 114

Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           G+++ A++    A+  +         LG +    GRLEEA  C+ KA+    + A 
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 85.3 bits (212), Expect = 5e-18
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 12/192 (6%)

Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
              V        +A+    + +    + P      H   A V  +       A      A
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALS---LSPNH-AVVHGNLACV-YYEQGLIDLAIDTYRRA 263

Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223
            ++ P+  D+Y          G   EA    +  + L P    +      +  +      
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ----- 318

Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
              +E++++ +R  ++       A +  A VL  Q     A  ++  +IR+ P  A  Y 
Sbjct: 319 -GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 284 HRAMLMLQARGN 295
           +     L+   +
Sbjct: 378 NMGNT-LKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 10/62 (16%), Positives = 21/62 (33%)

Query: 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517
           +++ A DF  A     +  + +P+          I+    + + +       I  NP   
Sbjct: 8   REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67

Query: 518 VA 519
            A
Sbjct: 68  EA 69

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 18/60 (30%), Positives = 24/60 (40%)

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            AA D   A      A + +P++       G +    G+ EEA     K I   PNF VA
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              ++      A K +P +A++Y   G +Y   GQ +EA+ +    + L P+F   
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           +  +A     +A +V P  A ++     +    G+ +EAL +  + I ++P F  A +  
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 8e-08
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +A    + A ++ P  ADS      I    G  EEA+R   K + + P F  A
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +A A   +A +  PN A ++   G ++   G+   A+ + +K + L+PNF  A
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +A      A ++ P+  D Y          G  E A++     +  NP+ +  
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 10/56 (17%), Positives = 17/56 (30%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
               A      A ++ P+  D+Y          G   EA    +  + L P    +
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            F +A A    A  + PN A  +     +Y   G  + A+    + I L P+F  A
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +   A    ++A  +DPN  D+Y   G +      ++ A+    + ++L+PN  V 
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  118 bits (297), Expect = 3e-30
 Identities = 47/250 (18%), Positives = 83/250 (33%), Gaps = 17/250 (6%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +AIE   +  E   +   I       RA    +   ++  A + L++A +    +   Y 
Sbjct: 23  EAIEHYNKAWE---LHKDIT--YLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYK 76

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
              + +   G     L +L KTI                     +       E+ LK+  
Sbjct: 77  VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAE 129

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
                +    E   L  +    + D+  A + +   I+  PE+A  Y +RA   L    +
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA-LAKLMS 188

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
             EAI    KAI  D + + AY    T ++       A++  + A     +        S
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG---SS 245

Query: 356 LRDAAIAQMK 365
            R+      K
Sbjct: 246 AREIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 23/183 (12%), Positives = 62/183 (33%), Gaps = 9/183 (4%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
            ++AD     G  +    Q++EA+ + +K   L+ +       R    ++          
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEK------GEY 54

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
           E ++    + V+    +     + ++      +         ++I    ++ + +   A 
Sbjct: 55  ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD 113

Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347
           + L    N ++ +K  E    ++          G     +     AVK + + +  A ++
Sbjct: 114 I-LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

Query: 348 AEL 350
           A  
Sbjct: 173 ARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 50/260 (19%)

Query: 72  FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD 131
           +E  +Y TAI    + +E             + +  +     +   + DL + +E     
Sbjct: 49  YEKGEYETAISTLNDAVEQGREM---RADYKVISKSFARIGNAYHKLGDLKKTIEY---Y 102

Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
            K     H    +  L    +  K     +    V+P  A+     G+ Y     +  A+
Sbjct: 103 QKSL-TEHRTADI--LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159

Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
           +   + I   P      + R                                        
Sbjct: 160 KAYTEMIKRAPEDARGYSNR---------------------------------------- 179

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
           A  L     F  A    N++I  DP     Y+ +A     A      A++ ++ A + D 
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 238

Query: 312 SCMFAYETLGTIEVQRGRLE 331
                       ++     +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 41/248 (16%), Positives = 69/248 (27%), Gaps = 44/248 (17%)

Query: 276 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335
              A                 DEAI+   KA  + K  +         E ++G  E A+ 
Sbjct: 2   GSMADKEKAEGNK-FYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAIS 59

Query: 336 CFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----YNIKKKVSPRSQNITKNEKLAI 391
             N A+   R+       Y +   + A++              +   +S          +
Sbjct: 60  TLNDAVEQGREMRA---DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADIL 115

Query: 392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN 451
            +LR     +                    +           + P       E++E+   
Sbjct: 116 TKLRNAEKEL---------------KKAEAEA---------YVNP-------EKAEEARL 144

Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
              E       SD+  A     E  K  P  A  Y  R         + EA+ + +K I 
Sbjct: 145 EGKE---YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201

Query: 512 LNPNFHVA 519
            +PNF  A
Sbjct: 202 KDPNFVRA 209

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  115 bits (290), Expect = 2e-27
 Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 49/298 (16%)

Query: 57  NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTK 116
           + +    L         HED L         I         +   L +A      S+   
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING---LEKSSDLLLCKADTLFVRSRFID 323

Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
            +   T+++E   +DP   ++ +       LH + +  K +   ++     P  A ++  
Sbjct: 324 VLAITTKILE---IDPYN-LDVYPLHLAS-LHESGEKNKLYLISNDLVDRHPEKAVTWLA 378

Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236
            G  Y    +  EA R   K+  ++P F                                
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQF-------------------------------- 406

Query: 237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296
                     A   FA     + + D A   +  + R+       Y+   M      GN+
Sbjct: 407 --------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ-HMQLGNI 457

Query: 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
             A + ++ + ++ +        LG +   +  ++ A+  F  AL L +        +
Sbjct: 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 96.1 bits (239), Expect = 4e-21
 Identities = 36/324 (11%), Positives = 87/324 (26%), Gaps = 84/324 (25%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
           LL KA   F    ++  +   T+ +E     +       L       + +  K       
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILE-IDPYNLDVY--PLHLASLHESGEKNKLYLISND 364

Query: 124 LVED-------------------------------TSVDPKIKVNAHIKRAVVHLHAASD 152
           LV+                                +++DP+    A I  A        +
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHS-FAIEGE 422

Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212
             +A +    A ++       Y   G  +   G    A   L  + AL     +      
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL----- 477

Query: 213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272
                                        + +         V  ++ D   A  +F  ++
Sbjct: 478 ----------------------------LNEL-------GVVAFNKSDMQTAINHFQNAL 502

Query: 273 RV-------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325
            +       +   A+ + +      +     D AI  + + + +  +    +  +  + +
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHA-YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561

Query: 326 QRGRLEEAVKCFNKALPLARDEAE 349
            +     A+   +++L ++ +E  
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 48/339 (14%), Positives = 96/339 (28%), Gaps = 18/339 (5%)

Query: 21  KPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTA 80
             S+    T             DG            + S E  L      A   + Y  A
Sbjct: 44  SNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCA 103

Query: 81  IRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140
                + ++ T + +         A VY  T    +A   LT+            + A  
Sbjct: 104 AFVGEKVLDITGNPN----DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159

Query: 141 KRAVVHLHAASDF----------TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
              +     A +            K    L   +      A   Y RGQ+Y     ++ A
Sbjct: 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219

Query: 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL 250
                + + ++       A    V + ++   +   +   L  +  +    +  + +  +
Sbjct: 220 KECYKEALMVDAKC--YEAFDQLVSNHLLTADEEWDLVLKLN-YSTYSKEDAAFLRSLYM 276

Query: 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
                   ED     E +  SI    +++ L + +A   L  R    + + +  K + ID
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT-LFVRSRFIDVLAITTKILEID 335

Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
              +  Y        + G   +     N  +    ++A 
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 63/376 (16%), Positives = 126/376 (33%), Gaps = 46/376 (12%)

Query: 156 AFADLDEAEKVDPNVADSYYQRGQIYCL-FGQYEEALRNLDKTIALNPNFHVA--RAQRH 212
           +F     A+  D    + Y +  +   L   QY+ A    +K + +  N + A   AQ +
Sbjct: 68  SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY 127

Query: 213 FVVHKMI----VPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAE 265
                      +    +   +S             +     A  L  +    ++D   A 
Sbjct: 128 CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187

Query: 266 EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325
           +   +   +  E AS+   R  +      N D A +  ++A+ +D  C  A++ L +  +
Sbjct: 188 KLLMQDGGIKLE-ASMCYLRGQV-YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245

Query: 326 QRGRLE-EAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNIT 384
                E + V   N +     D A L  +Y L+              + K          
Sbjct: 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK--------------LNKTSHEDELRRA 291

Query: 385 KNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DYTQKMTSILNSNDYEIIPGDPTKTI 443
           ++   +I  L +++D+++  AD              T K+  I +  + ++ P       
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-DPYNLDVYP------- 343

Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
                +    +ESG+        K +   ++     P  A ++   G  Y    +  EA 
Sbjct: 344 ----LHLASLHESGE------KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 504 RNLDKTIALNPNFHVA 519
           R   K+  ++P F  A
Sbjct: 394 RYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 19/199 (9%), Positives = 52/199 (26%), Gaps = 18/199 (9%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
             A +  A  +    +  +AI   T       +        ++   +       +   A 
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGT-HLPYLFLGMQ-HMQLGNILLAN 461

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL-------NPNFHVARAQ 210
             L  +  +         + G +       + A+ +    + L          +    A 
Sbjct: 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521

Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270
                 K+      +  + ++      +   +N     T  A V + ++    A  + + 
Sbjct: 522 LGHAYRKL------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 271 SIRVDPENASLYVHRAMLM 289
           S+ + P            +
Sbjct: 576 SLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            +  A   L++   +  N A+ +     +Y        A+ +L +++A++PN  +A
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           A + F  A   + + +  +   A ++   G  Y     Y+ A+  L++ + L+ N    
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 9/56 (16%), Positives = 17/56 (30%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +  +A +    A ++       Y   G  +   G    A   L  + AL     + 
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  109 bits (275), Expect = 2e-27
 Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 29/235 (12%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            +   + +      +          +          D+ KA     +A + +   A  Y 
Sbjct: 10  HSSGLVPRGSH---MASMTGGQQMGR-----GSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
               +     + E AL   DK + L+ +   A      V          E  +++   F 
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK------EMYKEAKDMFE 115

Query: 236 -------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
                     D    +         VLV  E    A  Y  R++ ++  +         +
Sbjct: 116 KALRAGMENGDLFYML-------GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG-M 167

Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
            L   G +DEA+         D     A+   G     +   E+A++  +KA+ +
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  102 bits (257), Expect = 7e-25
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 24/208 (11%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
           +      +   +     +          RG  +   G YE+A     K I  N    +  
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIPY 60

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDF 261
                ++  +        +E++L  +        +    +            V V +E +
Sbjct: 61  INFANLLSSV------NELERALAFYDKALELDSSAATAYYG-------AGNVYVVKEMY 107

Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
             A++ F +++R   EN  L+     + L        A+  +++A+ ++++   A    G
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTV-LVKLEQPKLALPYLQRAVELNENDTEARFQFG 166

Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAE 349
                 G L+EA+  F          A+
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHAD 194

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 46/214 (21%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A+    + +E   +D      A+     V       + +A    ++A +      D +Y
Sbjct: 75  RALAFYDKALE---LDSSA-ATAYYGAGNV-YVVKEMYKEAKDMFEKALRAGMENGDLFY 129

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
             G +     Q + AL  L + + LN N   A                            
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEA---------------------------- 161

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
                          F   L ++   D A   F      DP +A  + +  +     + N
Sbjct: 162 -----RFQ-------FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT-YAYKEN 208

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329
            ++A+++++KAI I    M A      +      
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +A +      + DP  AD++Y  G  Y      E+AL  LDK I + P+  +A
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 441 KTIEESEKYGNLENESG-----QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 495
            +     +  ++ + +G     +     D+ KA     +A + +   A  Y     +   
Sbjct: 10  HSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS 69

Query: 496 FGQYEEALRNLDKTIALNPNFHVA 519
             + E AL   DK + L+ +   A
Sbjct: 70  VNELERALAFYDKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            + +A    ++A +      D +Y  G +     Q + AL  L + + LN N   A
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
               A   L  A +++ N  ++ +Q G      G  +EAL         +P    A
Sbjct: 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +  +A A  D+A ++D + A +YY  G +Y +   Y+EA    +K +         
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 467 KAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVA 519
            +      +  + P  +      G         FG YE+A     K I  N    + 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  113 bits (284), Expect = 5e-27
 Identities = 52/425 (12%), Positives = 129/425 (30%), Gaps = 46/425 (10%)

Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIY 181
           + + K       A +  H       A   L +AE++         +     ++     +Y
Sbjct: 46  NREFKATMCNLLAYLK-HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104

Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPGDRERVEQSLKEFRNF 237
              G+  +    +DK   +   F          +        +     + E++   F   
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164

Query: 238 VDTHSNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPENASLYVHRAML---MLQ 291
           ++      E  +  A      +++     A +   ++IR++P+N  L V  A+    M +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224

Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
                 E  KL+E+A+           +      ++   ++A++   KAL    + A L 
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 352 H----IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD- 406
                 Y  +   +  ++    Y  +K +      +   +K A +       +    A  
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK-ADEANDNLFRVCSILASL 343

Query: 407 --KGGKTVVMDKADYTQKMTSILNSNDYEIIP-------------GDPTKTIEESEKYGN 451
                +    ++A+Y  +                               K I    +   
Sbjct: 344 HALADQY---EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400

Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
           +  +S +K    D  +  A        +   +++ +    +  L  + ++A  + ++ + 
Sbjct: 401 INQKSREKEKMKDKLQKIAK--MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

Query: 512 LNPNF 516
                
Sbjct: 459 SGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  104 bits (261), Expect = 4e-24
 Identities = 54/368 (14%), Positives = 115/368 (31%), Gaps = 50/368 (13%)

Query: 73  EHEDYLTAIRHCTEEIESTSSNHTKALARLL---RATVYIFTSQSTKAIEDLTQLVEDTS 129
           ++E  L  +R   E I+   ++  +  + +     A VY    + +     + ++     
Sbjct: 66  QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH--- 122

Query: 130 VDPKIKVNAHIKRAVVHLHAA--------SDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181
           V  K      I+   +             +   +A    ++A +  P   +         
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182

Query: 182 CL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238
                +   + A+  L + I LNP+    +      +HKM    + E   +  K     +
Sbjct: 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM--REEGEEEGEGEKLVEEAL 240

Query: 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML---------- 288
           +    V +     A+    +++ D A E   +++   P NA L+                
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 289 --------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
                     +    +  A+  ++KA   + +       L ++     + EEA   F K 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360

Query: 341 LPLARDEAELSHIYS-----------LRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKL 389
                       ++              D AI      E   I +K   + +   K +K+
Sbjct: 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI--EGVKINQKSREKEKMKDKLQKI 418

Query: 390 AIKQLREN 397
           A  +L +N
Sbjct: 419 AKMRLSKN 426

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 94.6 bits (235), Expect = 7e-21
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 41/271 (15%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            AI+ L Q +     +  +KV   +K   +      +  +    ++EA +  P V D   
Sbjct: 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV---------PGDRER 226
              + Y    + ++A+  L K +   PN      Q        +             + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 227 VEQSLKE----FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA--- 279
           + + +       +   + + N+   C++ A +    + ++ AE YF +    +       
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 280 SLYVHRAMLMLQARGNVDEAI------------------------KLIEKAISIDKSCMF 315
            L++      L      D+AI                        K+ +  +S + +   
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
           A   L  ++    ++++A +   + L     
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 93.8 bits (233), Expect = 1e-20
 Identities = 62/400 (15%), Positives = 118/400 (29%), Gaps = 76/400 (19%)

Query: 148 HAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
           H   +  +    LD+ E               A        +  L GQ E AL  L K  
Sbjct: 19  HFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAE 78

Query: 199 ALNPNFHVARAQRHFVVHKMIVP-------------GDRERVEQSLKEFRNFVDTHSNVV 245
            L    H  +A+   +V                      ++V+   ++F +     S  +
Sbjct: 79  ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM--LQARGNVDEAIKLI 303
           +    + ++       + A+  F +++   P+N       A+    L        AI  +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198

Query: 304 EKAISIDKSCMFAYETLGT----IEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
            +AI ++    +    L      +  +     E  K   +AL  A           LR A
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-----VTDVLRSA 253

Query: 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADY 419
           A         Y  K +              AI+ L++   +   P          + A  
Sbjct: 254 AKF-------YRRKDEP-----------DKAIELLKKA--LEYIP----------NNAYL 283

Query: 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479
             ++     +  +++        + E+  YG  +      HA +   KA       ++ +
Sbjct: 284 HCQIGCCYRAKVFQV------MNLRENGMYGKRKLLELIGHAVAHLKKA-------DEAN 330

Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            N+         ++ L  QYEEA     K  +        
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 39/275 (14%), Positives = 78/275 (28%), Gaps = 38/275 (13%)

Query: 65  LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL 124
           L   K   E E+     +   E +E               A  Y    +  KAIE L + 
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKA 273

Query: 125 VEDTSVDPKIKVNAHIKRAVVHLHAASD------------------FTKAFADLDEAEKV 166
           +E     P      H +    +                           A A L +A++ 
Sbjct: 274 LE---YIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
           + N+         ++ L  QYEEA     K  +       A+   H       +    + 
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV-AKQLLHLRYGNFQL-YQMKC 387

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
            ++++  F           E   +  +    ++  D  ++     +  +  ++      A
Sbjct: 388 EDKAIHHFI----------EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
            L  +    + +A +  E+ +        A    G
Sbjct: 438 FL-QELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  106 bits (266), Expect = 1e-26
 Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 10/198 (5%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG-------- 222
            D   Q+       GQ  +A+    +TIALN +        +   +  I           
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 223 --DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
                  +++   ++  +    N V+     A++ V +     A   + + ++++ +N +
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
             +              + ++   K +S      +A    G  ++   R E+A     K 
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183

Query: 341 LPLARDEAELSHIYSLRD 358
           +           +  +  
Sbjct: 184 ILRFPSTEAQKTLDKILR 201

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 32/249 (12%), Positives = 64/249 (25%), Gaps = 54/249 (21%)

Query: 96  TKALARLLRATVYIFTSQSTKAIEDLTQLVE------------DTSVDPKIKVNAHIKRA 143
                 L + +  I   Q+ +A+    Q +             +   + +I      + A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 144 VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
           +       ++ KA+    E  +  PN  D      ++    GQ ++ALR  +K + L  +
Sbjct: 62  LA-YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120

Query: 204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG 263
              A        +                                          E    
Sbjct: 121 NLAANIFLGNYYYLT---------------------------------------AEQEKK 141

Query: 264 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
             E   + +    +          L        ++A   ++K I    S   A +TL  I
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199

Query: 324 EVQRGRLEE 332
                 +  
Sbjct: 200 LRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 26/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%)

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
                 +  ++ G+  +AV  F + + L  D  E   +Y   +         +       
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---MYYWTNVDKNSEISSKLATELAL 62

Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE-- 433
              +++N  K    A    +E   +   P +                    +     +  
Sbjct: 63  AYKKNRNYDK----AYLFYKEL--LQKAPNNVDC---------LEACAEMQVCRGQEKDA 107

Query: 434 ------IIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
                 I+  +    +  +   GN    + ++       K      +       +  + Y
Sbjct: 108 LRMYEKILQLEA-DNLAANIFLGNYYYLTAEQ-----EKKKLETDYKKLSSPTKMQYARY 161

Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
           + G       +YE+A  +L K I   P+    + 
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 441 KTIEESEKYGNLENESGQ-KHAASDFTKAFA-DLDEAE--------KVDPNVADSYYQRG 490
           ++++E  +  +   E+GQ   A S F +  A ++D  E        K     +    +  
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
             Y     Y++A     + +   PN    
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDC 90

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  108 bits (273), Expect = 2e-26
 Identities = 43/323 (13%), Positives = 99/323 (30%), Gaps = 30/323 (9%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
           ++S A+R + + D+    +  +  +E     H   L   +     +  +++ +      +
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVME-KDPFHASCL--PVHIGTLVELNKANELFYLSHK 81

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
           LV+   + P     +       +L        A   L +A  ++     ++   G  + +
Sbjct: 82  LVD---LYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137

Query: 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243
             ++++A+        L    H+                     + + + F   +     
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT------NNSKLAERFFSQALSIAPE 191

Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---------NASLYVHRAMLMLQARG 294
                     V     ++  AE++F  ++                 L  +    + +   
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG-HVCRKLK 250

Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
              EA+    +A+ +       Y  +G I    G  E AV  F+ AL L RD+       
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF---SV 307

Query: 355 SLRDAAIAQMK----VCERYNIK 373
           ++    I             +IK
Sbjct: 308 TMLGHCIEMYIGDSEAYIGADIK 330

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 44/304 (14%), Positives = 88/304 (28%), Gaps = 53/304 (17%)

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
           + +S+   +  +D   ++       A+      DF    +  +  +  DP +AS      
Sbjct: 11  IPESVDGLQENLDVVVSL-------AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL-EEAVKCFNKALPLAR 345
              L      +E   L  K + +  S   ++  +G   +  G   E A +  +KA  L +
Sbjct: 64  GT-LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 346 DEAE----LSHIYSLR---DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENN 398
                     H +++    D A+A       Y    ++            + ++    NN
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAA------YFTAAQLMKGCHLPMLY--IGLEYGLTNN 174

Query: 399 DIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ 458
                             A+        +   D  ++            + G +  ++G+
Sbjct: 175 ---------------SKLAERFFSQALSIAPEDPFVM-----------HEVGVVAFQNGE 208

Query: 459 -KHAASDFTKA--FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
            K A   F  A         E             G +     +Y EAL    + + L P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 516 FHVA 519
               
Sbjct: 269 NAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 17/190 (8%), Positives = 47/190 (24%), Gaps = 40/190 (21%)

Query: 160 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219
           + E+        D      + +     ++   +     +  +P                 
Sbjct: 11  IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH--------------- 55

Query: 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
                                         +    LV+    +      ++ + + P N 
Sbjct: 56  -------------------------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
             +       L      + A + + KA +++K+   A+   G         ++A+  +  
Sbjct: 91  VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150

Query: 340 ALPLARDEAE 349
           A  L +    
Sbjct: 151 AAQLMKGCHL 160

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            + +A     +A  + P  A +Y   G I+ L G +E A+      + L  +   +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 6/65 (9%), Positives = 18/65 (27%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           +   A     +A  + P      ++ G +    G+++ A +     +             
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

Query: 524 HFVWT 528
            +   
Sbjct: 234 KWEPL 238

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  105 bits (265), Expect = 3e-26
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 22/216 (10%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
             ++  V  L+A   +  A    + A K +P   ++ Y   +     G    AL N    
Sbjct: 7   NPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65

Query: 198 IALNPNFHVAR-----AQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVV 245
           +A  P +         A              +  +EQ+L   +        +   H    
Sbjct: 66  VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ-- 123

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
                   V     + D AE    +++ ++     +    A L   + G +DEA+    K
Sbjct: 124 -----RGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL-YLSMGRLDEALAQYAK 176

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
           A+      +       +  + +G+ EEA +      
Sbjct: 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 19/193 (9%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
                +  + G      G+Y+ AL   ++ +  NP    A         K+        V
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL------GLV 55

Query: 228 EQSLKEFR-------NFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
             +L+  +        ++  +  +    V            +   + A      + RV+P
Sbjct: 56  NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115

Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
             A L++ R  L+    G  D+A   +++A++++ +       L  + +  GRL+EA+  
Sbjct: 116 RYAPLHLQRG-LVYALLGERDKAEASLKQALALEDTPE-IRSALAELYLSMGRLDEALAQ 173

Query: 337 FNKALPLARDEAE 349
           + KAL  A  + +
Sbjct: 174 YAKALEQAPKDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 30/209 (14%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            A+    + ++    +P+    A    A            A  +        P     Y 
Sbjct: 23  AALTLFERALK---ENPQD-PEALYWLART-QLKLGLVNPALENGKTLVARTPRYLGGYM 77

Query: 176 QRGQIYC-----------LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
              + Y              G  E+AL  L     +NP +     QR  V   +   G+R
Sbjct: 78  VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---GER 134

Query: 225 ERVEQSLK---EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
           ++ E SLK      +  +  S         A++ +     D A   + +++   P++  L
Sbjct: 135 DKAEASLKQALALEDTPEIRSA-------LAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISID 310
            V  A   L  +G  +EA +         
Sbjct: 188 RVRYASA-LLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +  A    + A K +P   ++ Y   +     G    AL N    +A  P +   
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 449 YGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
           Y  L  ++  +        +A + L +AE+V+P  A  + QRG +Y L G+ ++A  +L 
Sbjct: 83  YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142

Query: 508 KTIALNPN 515
           + +AL   
Sbjct: 143 QALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           +  KA A L +A  ++    +      ++Y   G+ +EAL    K +   P     R
Sbjct: 133 ERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 11/67 (16%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYC-----------LFGQYEEALRNLDKTIAL 512
               A  +        P     Y    + Y              G  E+AL  L     +
Sbjct: 54  LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113

Query: 513 NPNFHVA 519
           NP +   
Sbjct: 114 NPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
                +  + G      G+Y+ AL   ++ +  NP    A
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
                A +   +     +A A   +A +  P   D   +      L G+ EEA R     
Sbjct: 153 IRSALAEL-YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211

Query: 198 IALNPN 203
              + +
Sbjct: 212 HHHHHH 217

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  108 bits (272), Expect = 4e-26
 Identities = 47/245 (19%), Positives = 78/245 (31%), Gaps = 24/245 (9%)

Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
            I  +   +     DP     A     +       +   A   L    ++ PN   +   
Sbjct: 84  TILFMEAAIL---QDPGD-AEAWQFLGIT-QAENENEQAAIVALQRCLELQPNNLKALMA 138

Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236
               Y      ++A   L   I  NP +         V +K   PG   R+ +S  +   
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYL------VKNKKGSPGLTRRMSKSPVDSSV 192

Query: 237 FVDTHSNVVEACTLFAQ------------VLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
                   +EA                  +     +F+ A + FN ++ V PE+ SL+  
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252

Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
                L      +EA++   +A+ I    + +   LG   +  G   EAV  F  AL L 
Sbjct: 253 LGAT-LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311

Query: 345 RDEAE 349
           R    
Sbjct: 312 RKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 33/245 (13%), Positives = 77/245 (31%), Gaps = 24/245 (9%)

Query: 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
           Q+   +    +     + +P        +  +       D       ++ A   DP  A+
Sbjct: 42  QNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFMEAAILQDPGDAE 100

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQ 229
           ++   G         + A+  L + + L PN   A         V +      +    + 
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKA----LMALAVSYT-----NTSHQQD 151

Query: 230 SLKEFR-------NFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
           + +  +        +     N           ++  VD    +G +E +  +   + +  
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 280 SLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
              +   + ++    G  + AI     A+++       +  LG       R EEAV+ + 
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271

Query: 339 KALPL 343
           +AL +
Sbjct: 272 RALEI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 46/346 (13%), Positives = 98/346 (28%), Gaps = 74/346 (21%)

Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
            ++E A   ++                                     E+      +   
Sbjct: 3   MEFERAKAAVESDTEFWDKMQ--------------------------AEWEEMARRNWIS 36

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
                   Q   +Q     +E+ +        ++        +      G++   I  +E
Sbjct: 37  ------ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFME 89

Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYS---LR 357
            AI  D     A++ LG  + +    + A+    + L L  +  +    L+  Y+    +
Sbjct: 90  AAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149

Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417
             A              K +P+ + + KN+K +    R                  M K+
Sbjct: 150 QDACEA------LKNWIKQNPKYKYLVKNKKGSPGLTRR-----------------MSKS 186

Query: 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKY---GNLENESGQKHAASDFTKAFADLDE 474
                +   +     E    +      + +     G L + SG      +F +A    + 
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMI--DPDLQTGLGVLFHLSG------EFNRAIDAFNA 238

Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           A  V P     + + G       + EEA+    + + + P F  +R
Sbjct: 239 ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 54/224 (24%)

Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPK-IKVNAHIKRAVVH------LHAASDFTKA 156
           +      T + +K+  D + L     +  +    N  +    +        H + +F +A
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232

Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
               + A  V P     + + G       + EEA+    + + + P F  +         
Sbjct: 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS--------- 283

Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
                                     N+           ++   +  A   F  ++ +  
Sbjct: 284 ------------------------RYNL-------GISCINLGAYREAVSNFLTALSLQR 312

Query: 277 ENASLYVHRAMLM-------LQARGNVDEAIKLIEKAISIDKSC 313
           ++ +        +       L+   ++ +  +L + A   D   
Sbjct: 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  106 bits (267), Expect = 1e-25
 Identities = 29/250 (11%), Positives = 65/250 (26%), Gaps = 29/250 (11%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A      + +     P+    A     +           A   L+ A  +DP     + 
Sbjct: 39  EAALAFEAVCQ---AAPER-EEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHA 93

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---------RAQRHFVVHKMIVPGDRER 226
                +        AL +L   +   P +                  V  +         
Sbjct: 94  ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
             +             N    H++          +     ++D A     R++ + P++A
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHAS-------LGVLYNLSNNYDSAAANLRRAVELRPDDA 206

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
            L+       L       EA+    +A+ I+   +     +        + + A K   +
Sbjct: 207 QLWNKLGAT-LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 340 ALPLARDEAE 349
           A+ +      
Sbjct: 266 AIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  101 bits (255), Expect = 6e-24
 Identities = 31/230 (13%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
           P +     ++  +  +   ++  +A    +   +  P   +++   G       +   A+
Sbjct: 17  PYMYHENPMEEGLS-MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 192 RNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQSLKEFR-------NFVDTH 241
             L+    L+P         H    V H      +      +L   R        +    
Sbjct: 76  IALNHARMLDPKDIAV----HAALAVSHT-----NEHNANAALASLRAWLLSQPQYEQLG 126

Query: 242 SNVVEACTLFAQ--------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
           S  ++A                    ++       + ++ ++P +A L+    +L     
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL-YNLS 185

Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
            N D A   + +A+ +       +  LG       R +EA+  +N+AL +
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 35/299 (11%), Positives = 77/299 (25%), Gaps = 61/299 (20%)

Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
            + Q+  ++    +      E        ++   +   A   F    +  PE    +   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
            +           AI  +  A  +D   +  +  L            A+      L    
Sbjct: 62  GLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA 405
              +L                       +          ++E        E  +      
Sbjct: 121 QYEQLG------------------SVNLQADVDIDDLNVQSEDFFFAAPNEYRECR---- 158

Query: 406 DKGGKTVVMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKY---GNLENESGQKHA 461
                              ++ +N ND ++              +   G L N S     
Sbjct: 159 -----------TLLHA---ALEMNPNDAQL--------------HASLGVLYNLSN---- 186

Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
             ++  A A+L  A ++ P+ A  + + G       + +EAL   ++ + +NP +    
Sbjct: 187 --NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 24/220 (10%), Positives = 55/220 (25%), Gaps = 34/220 (15%)

Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
              +   D            ++  + G          EA    +      P    A    
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 212 HFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGA 264
                +       E+   ++             +  H+ +       A    ++ + + A
Sbjct: 62  GLTQAEN------EKDGLAIIALNHARMLDPKDIAVHAAL-------AVSHTNEHNANAA 108

Query: 265 EEYFNRSIRVDPENASLYVHRAM--------------LMLQARGNVDEAIKLIEKAISID 310
                  +   P+   L                        A     E   L+  A+ ++
Sbjct: 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168

Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
            +    + +LG +       + A     +A+ L  D+A+L
Sbjct: 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 56/247 (22%)

Query: 116 KAIE---DLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
             +       QL            + +++       A +++ +    L  A +++PN A 
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232
            +   G +Y L   Y+ A  NL + + L P+                             
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL------------------------- 208

Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
                    + +          L +      A + +NR++ ++P    +  + A+     
Sbjct: 209 --------WNKL-------GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS-YSN 252

Query: 293 RGNVDEAIKLIEKAISIDKSCMFAY------------ETLGTIEVQRGRLEEAVKCFNKA 340
               D A K + +AI +                    +    +     R +     + + 
Sbjct: 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312

Query: 341 LPLARDE 347
           +     E
Sbjct: 313 VEPFAKE 319

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  105 bits (263), Expect = 2e-25
 Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 10/258 (3%)

Query: 94  NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153
           ++T      + A     T Q    +  + Q++   ++    +     +R V+   +    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLR 59

Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
             A  D  +A  + P++ + +   G      G ++ A    D  + L+P ++ A   R  
Sbjct: 60  ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119

Query: 214 VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
            ++         R + +  +   F     N                D   A+E   +   
Sbjct: 120 ALYYG------GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFE 172

Query: 274 VDPENASLYVHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
              +    +      +  +  +  ++          S+ +        LG   +  G L+
Sbjct: 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232

Query: 332 EAVKCFNKALPLARDEAE 349
            A   F  A+        
Sbjct: 233 SATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  103 bits (258), Expect = 9e-25
 Identities = 32/264 (12%), Positives = 84/264 (31%), Gaps = 11/264 (4%)

Query: 77  YLTAIRHCTEEIESTS-SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
               +    + + S + ++  +A     R  +Y        A  D +Q +    + P + 
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA---IRPDM- 76

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
                   +  L  A +F  A+   D   ++DP    ++  RG      G+ + A  +L 
Sbjct: 77  PEVFNYLGIY-LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
                +PN        +    K+    +++  E   + F                +   +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKL---DEKQAKEVLKQHFEKSDKEQWGWNIVE-FYLGNI 191

Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
            +Q   +  +     +  +    +    +       + G++D A  L + A++ +     
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 316 AYETLGTIEVQRGRLEEAVKCFNK 339
            +          G+ ++ +   ++
Sbjct: 251 EHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 46/277 (16%), Positives = 80/277 (28%), Gaps = 42/277 (15%)

Query: 250 LFAQVLVDQEDFDGAEEYFNRSIR----VDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
           + A  L      +       + +      D E A L   R +L   + G    A     +
Sbjct: 10  VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLRALARNDFSQ 68

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
           A++I       +  LG    Q G  + A + F+  L L          +  R   IA   
Sbjct: 69  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNR--GIALYY 123

Query: 366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD---KGGKTVVMDKADYTQK 422
              R                  KLA   L         P D        +   K D  Q 
Sbjct: 124 G-GRD-----------------KLAQDDLLAF--YQDDPNDPFRSLWLYLAEQKLDEKQA 163

Query: 423 MTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNV 482
              +     +E          +E   +  +E   G     +   +  AD  +   +  ++
Sbjct: 164 KEVLKQH--FEKSD-------KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214

Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +++ +  G+ Y   G  + A       +A N +  V 
Sbjct: 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 36/260 (13%), Positives = 73/260 (28%), Gaps = 42/260 (16%)

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
           +         A   F++++ + P+   ++ +   + L   GN D A +  +  + +D + 
Sbjct: 52  LYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTY 110

Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYSLRDAAIAQMKVCER 369
            +A+   G      GR + A            ++      L       D   A+  + + 
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170

Query: 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI-LN 428
           +    K      NI +     I +      +                AD T    +  L 
Sbjct: 171 FEKSDKEQW-GWNIVEFYLGNISEQTLMERLK---------------ADATD---NTSLA 211

Query: 429 SNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQ 488
            +  E                  L        +  D   A A    A   + +    +  
Sbjct: 212 EHLSET--------------NFYLGK---YYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 489 RGQIYCLFGQYEEALRNLDK 508
                 L GQ ++ L   D+
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  103 bits (259), Expect = 5e-25
 Identities = 23/222 (10%), Positives = 67/222 (30%), Gaps = 14/222 (6%)

Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD- 195
           +   + A   L   +++ +A    ++ E    N    Y +R   Y    +Y+ A ++++ 
Sbjct: 4   DVEFRYADF-LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 196 --KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253
               +               ++ K        +   ++++++  VD  +  ++       
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
              ++ +F  A +Y  + IR    +  ++               +A     K + +  + 
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKEYVKADSSFVKVLELKPNI 175

Query: 314 MFAYETLGTIEV---QRGRLEEAVKCFNKALPLARDEAELSH 352
              Y              +   A   + K + +         
Sbjct: 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  103 bits (258), Expect = 7e-25
 Identities = 37/289 (12%), Positives = 69/289 (23%), Gaps = 55/289 (19%)

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
                A   F++ +Y  AI    +      ++         RA  Y   ++   A +D+ 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
                 +               + L      + A      A   D    D Y Q G  + 
Sbjct: 62  TYFSKVNATKAK-SADFEYYGKI-LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
             G +  A++ ++K I                                            
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTD---------------------------------PKVFY 146

Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--MLQARGNVDEAI 300
                     Q     +++  A+  F + + + P     Y+ RA              A 
Sbjct: 147 E-------LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199

Query: 301 KLIEKAISID--------KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
              EK I +            + A E +           +A   +   L
Sbjct: 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  100 bits (251), Expect = 6e-24
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 10/182 (5%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
            D  ++          Y EA+   +K  A   N        +    + +   +  + + +
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI----YN--RRAVCYYELAKYDLA 56

Query: 231 LKEFRNF---VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
            K+   +   V+           + ++L+ +     A + +  ++  D     +Y     
Sbjct: 57  QKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116

Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347
                +GN   AI+ +EK I    +    +  LG          +A   F K L L  + 
Sbjct: 117 Y-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

Query: 348 AE 349
             
Sbjct: 176 YI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 72  FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD 131
           +E   Y  A +         ++   K+        + +   Q + AI+     V+    D
Sbjct: 48  YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD---RD 104

Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
              +++ + +      +   +F  A   +++  +        +Y+ GQ Y    +Y +A 
Sbjct: 105 TT-RLDMYGQIGSY-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162

Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF--------RNFVDTHSN 243
            +  K + L PN ++    R              +   +   +                 
Sbjct: 163 SSFVKVLELKPNIYIGYLWRARANAAQ---DPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219

Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
           ++EA    A       D   A+  +   + +DP N        M
Sbjct: 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 46/212 (21%)

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI--YSLR-----DAAIAQMKVCE 368
                     +     EA++ FNK      +   + +            D A    K  E
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ---KDIE 61

Query: 369 RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI-L 427
            Y  K   +       +     + +  +++  I                 Y     ++  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAI---------------QQYQA---AVDR 103

Query: 428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
           ++   ++              YG + +    K    +F  A   +++  +        +Y
Sbjct: 104 DTTRLDM--------------YGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFY 146

Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           + GQ Y    +Y +A  +  K + L PN ++ 
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 449 YGNLENESGQKHAASDFTKAFA-DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
               + ++ Q  A   + K          K    + ++       Y +     +A     
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245

Query: 508 KTIALNPNFHVA 519
             +AL+P    A
Sbjct: 246 NILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            D  ++          Y EA+   +K  A   N    
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPN 515
           ++ KA +   +  ++ PN+   Y  R +         +   A    +K I +   
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  101 bits (255), Expect = 1e-24
 Identities = 31/252 (12%), Positives = 76/252 (30%), Gaps = 37/252 (14%)

Query: 108 YIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD 167
           ++      K  +   +  +           A+I+  +       +  +A   L +A ++D
Sbjct: 20  HMGDQNPLKTDKGRDEARD-----------AYIQLGLG-YLQRGNTEQAKVPLRKALEID 67

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRER 226
           P+ AD++     ++    + + A     K +A +              +       +++R
Sbjct: 68  PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL-------NNYGGFLYEQKR 120

Query: 227 VEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
            E++ +                   N+         V +  +    A+EYF +S+R++  
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENL-------GLVSLQMKKPAQAKEYFEKSLRLNRN 173

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
             S+ +  A L L        A +  +           +      +       + A    
Sbjct: 174 QPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232

Query: 338 NKALPLARDEAE 349
            +   L     E
Sbjct: 233 LQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 12/186 (6%)

Query: 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225
           +  +    ++  G    +        +N  KT         A  Q             R 
Sbjct: 1   MGSSHHHHHHSSG---LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYL------QRG 51

Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
             EQ+    R  ++   +  +A    A V   + +   A+E + +++  D  NA +  + 
Sbjct: 52  NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111

Query: 286 AMLMLQARGNVDEAIKLIEKAI--SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
               L  +   +EA + + +A   ++       +E LG + +Q  +  +A + F K+L L
Sbjct: 112 GGF-LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 344 ARDEAE 349
            R++  
Sbjct: 171 NRNQPS 176

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 474 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           + +K      D+Y Q G  Y   G  E+A   L K + ++P+   A
Sbjct: 28  KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA 73

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 438 DPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
           +P KT +  ++  +   + G       +  +A   L +A ++DP+ AD++     ++   
Sbjct: 25  NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE 84

Query: 497 GQYEEALRNLDKTIALNPNFHVAR 520
            + + A     K +A +       
Sbjct: 85  MEPKLADEEYRKALASDSRNARVL 108

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 449 YGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
           YG    E  + + A     +A  D      + P  +  +   G +     +  +A    +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDT-----LYPERSRVFENLGLVSLQMKKPAQAKEYFE 165

Query: 508 KTIALNPNFHVA 519
           K++ LN N    
Sbjct: 166 KSLRLNRNQPSV 177

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 5/53 (9%), Positives = 16/53 (30%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
              +A    +++ +++ N      +   +     +Y  A +  D         
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A E   + +    ++   + +  ++ A + L+   ++  A    D   +     A S  
Sbjct: 159 QAKEYFEKSLR---LNRN-QPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLL 213

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
              ++  +F   + A     +   L P     + 
Sbjct: 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 6/72 (8%)

Query: 450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 509
            +L  +        ++  A    D   +     A S     ++  +F   + A     + 
Sbjct: 182 ADLLYKER------EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235

Query: 510 IALNPNFHVARA 521
             L P     + 
Sbjct: 236 KRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 9/58 (15%)

Query: 471 DLDEAEK-------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA--LNPNFHVA 519
           +   A++        D   A      G       +YEEA + L +     L P     
Sbjct: 86  EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 99.4 bits (249), Expect = 2e-24
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 22/196 (11%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
           D      Y  +G  +   G+Y +A+  L++    +              H  I       
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV----AL--HLGIAYVKTGA 57

Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
           V++  +          + V   + +           V  + +D A     +    +P N 
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVL-------GLTYVQVQKYDLAVPLLIKVAEANPINF 110

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
           ++      + L   G  DEAI   + A+ +  +    +  +     Q GR EEA+  F K
Sbjct: 111 NVRFRLG-VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

Query: 340 ALPLARDEAE-LSHIY 354
           A  L    +  L+ + 
Sbjct: 170 ANELDEGASVELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 78.6 bits (195), Expect = 4e-17
 Identities = 30/208 (14%), Positives = 58/208 (27%), Gaps = 49/208 (23%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A+  L Q+ +    D    V+  +   +          +    L+ +    P+      
Sbjct: 26  QAVMLLEQVYD---ADAF-DVDVALHLGIA-YVKTGAVDRGTELLERSLADAPDNVKVAT 80

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
             G  Y    +Y+ A+  L K    NP                                 
Sbjct: 81  VLGLTYVQVQKYDLAVPLLIKVAEANPINFNV---------------------------- 112

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
                              L +   FD A + F  ++ + P    ++   A    +  G 
Sbjct: 113 -----RFR-------LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS-YEQMGR 159

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTI 323
            +EA+   +KA  +D+    A   L  +
Sbjct: 160 HEEALPHFKKANELDEG---ASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
            F +A      A  + PN    +      Y   G++EEAL +  K   L+    V  A
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 10/56 (17%), Positives = 17/56 (30%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +    L+ +    P+        G  Y    +Y+ A+  L K    NP     
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            +++A   L++    D    D     G  Y   G  +     L++++A  P+    
Sbjct: 23  RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            +  A   L +  + +P   +  ++ G      G+++EA+ +    + L PN    
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D      Y  +G  +   G+Y +A+  L++    +      
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  100 bits (250), Expect = 4e-23
 Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 25/267 (9%)

Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
           A+      V+    DPK  + A                 A + L    ++ P+   +   
Sbjct: 83  AVLLFEAAVQ---QDPKH-MEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMA 137

Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV---------HKMIVPGDRERV 227
               +       +A   L   +   P +                      +         
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197

Query: 228 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
            +  + F   V      ++         +     ++D A + F  ++ V P +  L+   
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257

Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
               L      +EA+    +A+ +    + +   LG   +  G   EAV+ F +AL + R
Sbjct: 258 G-ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 346 DEAE--------LSHIYSLRDAAIAQM 364
                         +I+S    A++ +
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSML 343

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 29/231 (12%)

Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
           P        +  +       D   A    + A + DP   +++   G       Q   A+
Sbjct: 60  PLRDHPQPFEEGLR-RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118

Query: 192 RNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
             L + + L P+   A         V        +     Q+ +  R+++          
Sbjct: 119 SALRRCLELKPDNQTA----LMALAVSFT-----NESLQRQACEILRDWLRYTPAYAHLV 169

Query: 249 TLFAQ---------------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQA 292
           T   +                L+    F   +E F  ++R+DP +    V   + ++   
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229

Query: 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
            G  D+A+     A+S+  +    +  LG       + EEAV  + +AL L
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 41/367 (11%), Positives = 87/367 (23%), Gaps = 94/367 (25%)

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQY-EEALRNLDKTIALNPNFHVARAQRHFVVH 216
           +D+D  +K+   + +   +  + +     Y +      DK         +    + F   
Sbjct: 12  SDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPF--- 68

Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
                                                  + + D   A   F  +++ DP
Sbjct: 69  ---------------------------------EEGLRRLQEGDLPNAVLLFEAAVQQDP 95

Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
           ++   + +              AI  + + + +      A   L           +A + 
Sbjct: 96  KHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154

Query: 337 FNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
               L      A    + +  +       +     I   +   S           +    
Sbjct: 155 LRDWLRYTPAYAH---LVTPAEEGAGGAGLGPSKRILGSLLSDSLF-----LEVKELFLA 206

Query: 397 NNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY---GNLE 453
              + + P                                        + +     G L 
Sbjct: 207 A--VRLDP-------------TSI------------------------DPDVQCGLGVLF 227

Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
           N SG      ++ KA      A  V PN    + + G       Q EEA+    + + L 
Sbjct: 228 NLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

Query: 514 PNFHVAR 520
           P +  +R
Sbjct: 282 PGYIRSR 288

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 87.8 bits (218), Expect = 6e-19
 Identities = 38/319 (11%), Positives = 81/319 (25%), Gaps = 55/319 (17%)

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               +  R  +  D   A+      ++    +     A     T      Q   AI  L 
Sbjct: 66  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALR 122

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
           + +E   + P     A +  AV      S   +A   L +  +  P  A       +   
Sbjct: 123 RCLE---LKPDN-QTALMALAVS-FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177

Query: 183 LF---------------GQYEEALRNLDKTIALNPNFHVARAQRHF-VVHKMIVPGDRER 226
                              + E        + L+P       Q    V+           
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-----LSGE 232

Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
            ++++  F        N     + +          L +    + A   + R++ + P   
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKL-------GATLANGNQSEEAVAAYRRALELQPGYI 285

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-----------SCMFAYETLGTIEVQRG 328
               +  +      G   EA++   +A+++ +                + TL       G
Sbjct: 286 RSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344

Query: 329 RLEEAVKCFNKALPLARDE 347
           + +       + L      
Sbjct: 345 QSDAYGAADARDLSTLLTM 363

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 96.2 bits (240), Expect = 7e-23
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 25/222 (11%)

Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 196
           N   + A+       D+ +A A +++A K DP    ++  R +IY      ++A  +  +
Sbjct: 9   NIKTQLAME-YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 197 TIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR---------NFVDTHSNVVEA 247
            +++ P+         + +      G   R  +S+  F               + N    
Sbjct: 68  ALSIKPDSAEINNNYGWFLC-----GRLNRPAESMAYFDKALADPTYPTPYIANLNK--- 119

Query: 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307
                     Q  F  AE Y  RS+   P+    +   A       G + +A    +K  
Sbjct: 120 ----GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART-KMLAGQLGDADYYFKKYQ 174

Query: 308 SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           S  +      + L         L  A   +     L  +   
Sbjct: 175 SRVEV--LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 28/207 (13%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222
           AEK    V++   Q    Y     Y +A  +++  +  +P   +A   R  +   +    
Sbjct: 1   AEK-ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL---- 55

Query: 223 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRV 274
             +  +++ + FR       +  + ++N       +   L  +      +  YF++++  
Sbjct: 56  --KVNDKAQESFRQALSIKPDSAEINNN-------YGWFLCGRLNRPAESMAYFDKALAD 106

Query: 275 D--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
              P      +++  +    +G    A   ++++++       A++ L   ++  G+L +
Sbjct: 107 PTYPTPYIANLNKG-ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165

Query: 333 AVKCFNKALPLARDEAELSHIYSLRDA 359
           A   F K             +   + A
Sbjct: 166 ADYYFKKYQSRVEVLQADDLLLGWKIA 192

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           D+ +A A +++A K DP    ++  R +IY      ++A  +  + +++ P+     
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 449 YGN-LENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
           YG  L     +   + + F KA AD        P    +   +G      GQ+  A   L
Sbjct: 82  YGWFLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYL 136

Query: 507 DKTIALNPNFHVA 519
            +++A  P F  A
Sbjct: 137 KRSLAAQPQFPPA 149

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           AEK    V++   Q    Y     Y +A  +++  +  +P   +A
Sbjct: 1   AEK-ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
            F  A A L  +    P    ++ +  +   L GQ  +A     K  +     
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 97.8 bits (243), Expect = 6e-22
 Identities = 43/313 (13%), Positives = 104/313 (33%), Gaps = 29/313 (9%)

Query: 44  GLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL 103
            ++ G ++  G      E +     ++     D L   R    E  S      K      
Sbjct: 23  SMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--- 79

Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
                    +  K ++ + +++         +  A + +            +A   L +A
Sbjct: 80  ------VQEEMEKTLQQMEEVLGS---AQV-EAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM---IV 220
            K++P + +++ Q G++Y   G    A       +    N  V+      V+ ++     
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSG 188

Query: 221 PGDRERVEQSLKEFR-------NFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSI 272
                 V  S+++ +           +   +     +L+     + +    A   + ++ 
Sbjct: 189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248

Query: 273 RVD---PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329
           +VD     N  L+++RA L  +   +  EA++   +A ++D +     +    +     R
Sbjct: 249 KVDRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307

Query: 330 LEEAVKCFNKALP 342
           L   ++   K  P
Sbjct: 308 LTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 87.0 bits (215), Expect = 2e-18
 Identities = 39/307 (12%), Positives = 95/307 (30%), Gaps = 64/307 (20%)

Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
           ++++  +     F D++           +    QE+ +   +     +      A   + 
Sbjct: 48  QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107

Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
           +   +        EA  L+ KA+ ++   + A+  LG +  ++G +  A  CF+ AL   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 345 RDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRP 404
           ++             ++  + +  R          S+++      +++Q +      ++ 
Sbjct: 168 KN-----------KVSLQNLSMVLRQLQTDSGDEHSRHVMD----SVRQAKL----AVQ- 207

Query: 405 ADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNL-----ENESGQK 459
                                 ++  D                 +  L            
Sbjct: 208 ----------------------MDVLDGR--------------SWYILGNAYLSLYFNTG 231

Query: 460 HAASDFTKAFADLDEAEKVD---PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
                  +A +   +AEKVD    +  D +  R  ++     Y EAL    +  AL+P +
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291

Query: 517 HVARAQR 523
              + + 
Sbjct: 292 PEPQQRE 298

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 94.9 bits (235), Expect = 1e-20
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 15/216 (6%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
            P  ADS      I    G  EEA+R   K + + P F  A +    V+ +        +
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------GK 58

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
           ++++L  ++  +       +A +     L + +D  GA + + R+I+++P  A  + + A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
             + +  GN+ EAI     A+ +      AY  L           +  +   K + +  D
Sbjct: 119 S-IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177

Query: 347 EAELS--------HIYSLRDAAIAQMKVCERYNIKK 374
           + E +        H      +   +  + ER+    
Sbjct: 178 QLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 89.9 bits (222), Expect = 6e-19
 Identities = 40/247 (16%), Positives = 92/247 (37%), Gaps = 9/247 (3%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
            ++    A +      +  +A     +A +V P  A ++     +    G+ +EAL +  
Sbjct: 9   ADSLNNLANI-KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
           + I ++P F  A +     + +M      + V+ +L+ +   +  +    +A +  A + 
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIH 121

Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
            D  +   A   +  ++++ P+    Y + A   LQ   +  +  + ++K +SI    + 
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC-LQIVCDWTDYDERMKKLVSIVADQLE 180

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
               L ++      L      F KA+        L  I  L        K  +  + + +
Sbjct: 181 KN-RLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLR 239

Query: 376 VSPRSQN 382
           V   S +
Sbjct: 240 VGYVSSD 246

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 8/136 (5%)

Query: 76  DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
           +   A+R   + +E        A A    A+V     +  +A+    + +    + P   
Sbjct: 24  NIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTF- 76

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
            +A+       L    D   A      A +++P  AD++     I+   G   EA+ +  
Sbjct: 77  ADAYSNMGNT-LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 196 KTIALNPNFHVARAQR 211
             + L P+F  A    
Sbjct: 136 TALKLKPDFPDAYCNL 151

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           D   A      A +++P  AD++     I+   G   EA+ +    + L P+F  A    
Sbjct: 92  DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
               +  +A     +A +V P  A ++     +    G+ +EAL +  + I ++P F  A
Sbjct: 20  REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 79

Query: 520 RAQR 523
            +  
Sbjct: 80  YSNM 83

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            P  ADS      I    G  EEA+R   K + + P F  A
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
              +A     EA ++ P  AD+Y   G         + AL+   + I +NP F  A +  
Sbjct: 58  KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117

Query: 524 HFV 526
             +
Sbjct: 118 ASI 120

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 84.7 bits (211), Expect = 9e-20
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 41/173 (23%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
           A+++Y  G  Y   G Y+EA+    K + L+P    A                       
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------------------- 37

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
                       N+             Q D+D A EY+ +++ +DP +A  + +      
Sbjct: 38  ----------WYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAY 79

Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
             +G+ DEAI+  +KA+ +D     A+  LG    ++G  +EA++ + KAL L
Sbjct: 80  YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 42/173 (24%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
           A         +   D+ +A     +A ++DP  A+++Y  G  Y   G Y+EA+    K 
Sbjct: 3   AWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
           + L+P    A                                   N+             
Sbjct: 62  LELDPRSAEA---------------------------------WYNL-------GNAYYK 81

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
           Q D+D A EY+ +++ +DP +A  + +        +G+ DEAI+  +KA+ +D
Sbjct: 82  QGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
               Q D+D A EY+ +++ +DP +A  + +        +G+ DEAI+  +KA+ +D   
Sbjct: 10  AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELDPRS 68

Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
             A+  LG    ++G  +EA++ + KAL L    AE
Sbjct: 69  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 41/143 (28%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
             A         +   D+ +A     +A ++DP  A+++Y  G  Y   G Y+EA+    
Sbjct: 35  AEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
           K + L+P    A                                   N            
Sbjct: 94  KALELDPRSAEA---------------------------------WYN-------LGNAY 113

Query: 256 VDQEDFDGAEEYFNRSIRVDPEN 278
             Q D+D A EY+ +++ +DP +
Sbjct: 114 YKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D+ +A     +A ++DP  A+++Y  G  Y   G Y+EA+    K + L+P    A
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D+ +A     +A ++DP  A+++Y  G  Y   G Y+EA+    K + L+P    A
Sbjct: 16  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           D+ +A     +A ++DP  A+++Y  G  Y   G Y+EA+    K + L+P 
Sbjct: 84  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           A+++Y  G  Y   G Y+EA+    K + L+P    A
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 27/214 (12%), Positives = 53/214 (24%), Gaps = 12/214 (5%)

Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
                 L  L   +   P   VA          M                +  +  H   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM------GDTTAGEMAVQRGLALHPGH 56

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
            EA     +V   Q+    A     ++    PE+  + +      L+  G  + A     
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA-LEDAGQAEAAAAAYT 115

Query: 305 KAISIDKSCMFAYETLGTIEVQRGR---LEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
           +A  +     +    L     +      L+        A+       E     S   +A 
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAA 175

Query: 362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR 395
            Q+         + ++   + +      +   LR
Sbjct: 176 EQLACARTRA--QAIAASVRPLAPTRVRSKGPLR 207

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 11/195 (5%)

Query: 76  DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
           D    +      +     +    +A L+ A   +    +T     + + +    + P   
Sbjct: 4   DGPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPG-H 56

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
             A  +   V         +A   L +A    P         G      GQ E A     
Sbjct: 57  PEAVARLGRVR-WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
           +   L P      AQ      ++    D   ++    + R  V      VE     ++  
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRL---CDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

Query: 256 VDQEDFDGAEEYFNR 270
              E    A      
Sbjct: 173 SAAEQLACARTRAQA 187

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 18/72 (25%)

Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
           +      +       +A   L +A    P         G      GQ E A     +   
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 512 LNPNFHVARAQR 523
           L P      AQ 
Sbjct: 120 LLPEEPYITAQL 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 21/67 (31%)

Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
            +D  +    L  A +  P    ++          G        + + +AL+P    A A
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 522 QRHFVWT 528
           +   V  
Sbjct: 62  RLGRVRW 68

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 8/64 (12%), Positives = 18/64 (28%)

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
               D T     +     + P   ++  + G++     ++ EA   L +     P     
Sbjct: 34  LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

Query: 520 RAQR 523
               
Sbjct: 94  ALWL 97

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 79.4 bits (195), Expect = 1e-16
 Identities = 48/312 (15%), Positives = 90/312 (28%), Gaps = 36/312 (11%)

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
           D L   K AF    Y   I        S+     +    L RA  Y+   +    ++++ 
Sbjct: 1   DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRA--YLAQRKYGVVLDEIK 58

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE--AEKVDPNVADSYYQRGQI 180
                            ++    +L + S      A+LD   +  VD            I
Sbjct: 59  --------PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110

Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240
           Y      + ALR L +  +L       +                +R++ + KE +   D 
Sbjct: 111 YFYDQNPDAALRTLHQGDSLECMAMTVQILLK-----------LDRLDLARKELKKMQDQ 159

Query: 241 HSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298
             +        A V +    E    A   F            L   +A   +  +G  + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEA 218

Query: 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL-------PLARDEAELS 351
           A  ++++A+  D         L  +    G+  E    +   L       P  ++     
Sbjct: 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE 278

Query: 352 HIYSLRDAAIAQ 363
           + +   D  + Q
Sbjct: 279 NDF---DRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
           +V +++Y         G Y++ +    +    +P   V R    F+    +       V 
Sbjct: 5   DVKNAFYI--------GSYQQCINEAQRVKPSSPERDVER--DVFLYRAYLAQRKYGVVL 54

Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR--SIRVDPENASLYVHRA 286
             +K       + +  ++A  +FA+ L      D      +R  S  VD  N +  +  A
Sbjct: 55  DEIK------PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAA 108

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
             +     N D A++ + +  S++   M        I ++  RL+ A K   K      D
Sbjct: 109 -SIYFYDQNPDAALRTLHQGDSLECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDED 162

Query: 347 EAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
                   +    A    K+ + Y I ++++
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 29/265 (10%), Positives = 70/265 (26%), Gaps = 43/265 (16%)

Query: 260 DFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
            +        R     PE      ++++RA L   A+      +  I+ + + +   + A
Sbjct: 14  SYQQCINEAQRVKPSSPERDVERDVFLYRAYL---AQRKYGVVLDEIKPSSAPE---LQA 67

Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376
                       R +  V   ++ +       ++++   L  AA                
Sbjct: 68  VRMFAEYLASHSRRDAIVAELDREM---SRSVDVTNTTFLLMAASIYFY----------- 113

Query: 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIP 436
                   +N   A++ L + + +    A      + +D+ D  +K    +   D     
Sbjct: 114 -------DQNPDAALRTLHQGDSLEC-MAMTVQILLKLDRLDLARKELKKMQDQD----- 160

Query: 437 GDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
                  E++                     A+    E              +   +   
Sbjct: 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213

Query: 497 GQYEEALRNLDKTIALNPNFHVARA 521
           G++E A   L + +  +        
Sbjct: 214 GRWEAAEGVLQEALDKDSGHPETLI 238

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 1/132 (0%)

Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
                    + +E              +D A++ F     +D  +A  ++       Q+ 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQSL 65

Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
           G  ++A++       +D +            +Q G L+ A   F  A  LA  +     +
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 354 YSLRDAAIAQMK 365
            +   A +  + 
Sbjct: 126 AARAGAMLEAVT 137

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 14/155 (9%), Positives = 34/155 (21%), Gaps = 41/155 (26%)

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
             L     +  +  +  Y  G      G++++A +       L+                
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA------------ 52

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
                                                      ++ A + ++    +D  
Sbjct: 53  ----------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
                 H A       G++D A      A ++  +
Sbjct: 85  EPRFPFHAAEC-HLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 43/159 (27%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
           +           + A  +  A         +D   A  +   G      G YE+AL++  
Sbjct: 18  LEQLYALGFN-QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
               ++ N                                                A+  
Sbjct: 77  YGALMDINEPRFPFHA----------------------------------------AECH 96

Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYV--HRAMLMLQA 292
           +   D DGAE  F  +  +     +      RA  ML+A
Sbjct: 97  LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 5/88 (5%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            A +    L     +D        +        +   + +A         +D N     +
Sbjct: 36  DAQKIFQALCM---LDHY-DARYFLGLGAC-RQSLGLYEQALQSYSYGALMDINEPRFPF 90

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPN 203
              + +   G  + A        AL   
Sbjct: 91  HAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            +  A         +D   A  +   G      G YE+AL++      ++ N    
Sbjct: 33  KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 7/56 (12%), Positives = 15/56 (26%)

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
            +   + +A         +D N     +   + +   G  + A        AL   
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 6/50 (12%), Positives = 15/50 (30%)

Query: 470 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
             L     +  +  +  Y  G      G++++A +       L+      
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY 54

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 80.1 bits (197), Expect = 2e-16
 Identities = 26/218 (11%), Positives = 68/218 (31%), Gaps = 18/218 (8%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           R V+      D  +    +    +  P     ++ R  +        + L  +   +  +
Sbjct: 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196

Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
              + A   R +V+ +       +  +  L+     +               V+ +   +
Sbjct: 197 AKNYHAWQHRQWVIQEF------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250

Query: 262 DGAE------EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSC 313
           +         +Y    I++ P N S + +   ++      + +   L+ + + +    S 
Sbjct: 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSS 308

Query: 314 MFAYETLGTI--EVQRGRLEEAVKCFNKALPLARDEAE 349
            +    L  I  ++   + +      NKAL L    A+
Sbjct: 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 346

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 12/181 (6%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
                D Y     +     + E A +     I LN   +     R  ++  +     ++ 
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKD 147

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
           + + +      ++      +       ++    D     E+    +  D +N   + HR 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR------LEEAVKCFNKA 340
            + +Q     D  ++ +++ +  D      +     +            LE  V+   + 
Sbjct: 208 WV-IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266

Query: 341 L 341
           +
Sbjct: 267 I 267

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
           I  +  F         V+ +       ER E++ K  R+ ++ ++           +L  
Sbjct: 90  IIYSDKFRDVYDYFRAVLQRD------ERSERAFKLTRDAIELNAANYTVWHFRRVLLKS 143

Query: 258 -QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
            Q+D      Y    I   P+N  ++ HR +L ++   +  + ++ I   ++ D     A
Sbjct: 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLRDPSQELEFIADILNQDAKNYHA 202

Query: 317 YETLGTIEVQRGRLEEAVKCFNKAL 341
           ++    +  +    +  ++  ++ L
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLL 227

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
           +    F  VL   E  + A +    +I ++  N +++  R +L+   + ++ E +  I  
Sbjct: 98  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
            I         +     +        + ++     L     +A+  H +  R   I + K
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFK 214

Query: 366 VCE 368
           + +
Sbjct: 215 LWD 217

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTK-AFADLDEAEKVDPNVADSYYQRGQIY-CL 495
           +P   I  S+K+ ++ +         + ++ AF    +A +++      ++ R  +   L
Sbjct: 85  NPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL 144

Query: 496 FGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
                E +  +   I   P  +     R  +
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 12/87 (13%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           D ++    + +    D     ++  R  +   F  ++  L+ +D+ +  +   +    QR
Sbjct: 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240

Query: 524 HFVWTSTLAELMAFSDEFMIPK-ITYY 549
           +FV    ++    ++D  ++ + + Y 
Sbjct: 241 YFV----ISNTTGYNDRAVLEREVQYT 263

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 73.0 bits (179), Expect = 3e-15
 Identities = 28/166 (16%), Positives = 70/166 (42%), Gaps = 2/166 (1%)

Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
           P +   RA+       +     ++  E  L+  ++ +  +    E   L  +  + Q D+
Sbjct: 1   PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60

Query: 262 DGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNV-DEAIKLIEKAISIDKSCMFAYET 319
             +   + +++++  ENA LY   A +L  QA  ++  +   +I+KA+++D + + A   
Sbjct: 61  SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120

Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
           L +    +    +A++ + K + L       + +    + A    +
Sbjct: 121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
              +  +       L +  + +P  ++ +   G+ Y     Y  +L    + + L     
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
              A    V   +     +    Q+       +   SN + A  L A     Q ++  A 
Sbjct: 79  ELYAALATV---LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135

Query: 266 EYFNRSIRVDPENASLY-----VHRAMLMLQAR 293
           E + + + ++    +       ++ A L+ +  
Sbjct: 136 ELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 9/71 (12%), Positives = 22/71 (30%)

Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
             +   Q  +  +       L +  + +P  ++ +   G+ Y     Y  +L    + + 
Sbjct: 13  QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72

Query: 512 LNPNFHVARAQ 522
           L        A 
Sbjct: 73  LRGENAELYAA 83

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 1/140 (0%)

Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
            +           +  S+ +E     A        ++ A   F     +D  ++  ++  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
                QA G  D AI        +D              +Q G L EA      A  L  
Sbjct: 62  G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 346 DEAELSHIYSLRDAAIAQMK 365
           +  E   + +   + +  +K
Sbjct: 121 NXPEFXELSTRVSSMLEAIK 140

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 41/182 (22%)

Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
                   +    ++  +  +  Y         G YE+A         L+          
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS------ 55

Query: 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271
                                                            +D A   ++  
Sbjct: 56  ----------------------------------RFFLGLGACRQAMGQYDLAIHSYSYG 81

Query: 272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
             +D        H A   L   G + EA   +  A  +  +     E    +      ++
Sbjct: 82  AVMDIXEPRFPFHAAEC-LLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140

Query: 332 EA 333
             
Sbjct: 141 LK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 6/56 (10%), Positives = 13/56 (23%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
                   +    ++  +  +  Y         G YE+A         L+      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 7/63 (11%), Positives = 19/63 (30%)

Query: 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
            + + +  +  A         +D   +  +   G      GQY+ A+ +      ++   
Sbjct: 29  FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88

Query: 205 HVA 207
              
Sbjct: 89  PRF 91

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 7/55 (12%), Positives = 16/55 (29%)

Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +  A         +D   +  +   G      GQY+ A+ +      ++      
Sbjct: 37  YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 75.5 bits (185), Expect = 6e-15
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 39/222 (17%)

Query: 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY--YQRGQIYCLFG---QYEEALRNLD 195
              +  L  A +        +  +K+ P+       + +   Y L G       A   L 
Sbjct: 164 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLG 223

Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
           + +  +P F  ARA++  V                                     +Q  
Sbjct: 224 EIVQSSPEFTYARAEKALV--------------------------------DIVRHSQHP 251

Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCM 314
           +D++         +  + +   N    +++   +    +G  DE+ + I   I ++ S +
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL 311

Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
             Y  LG +   +G   EA   +  A  L      L  I + 
Sbjct: 312 -NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG 352

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 60/237 (25%)

Query: 86  EEIESTSSNHTKALARLLRATVYIFTS---QSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142
           E ++    +    L    +A  Y+         +A E L ++V+     P+    A  ++
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEF-TYARAEK 239

Query: 143 AVVHLHAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIYCLFGQYEEALRN 193
           A+V +   S        L                 N++  Y  +     + G+ +E+ + 
Sbjct: 240 ALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA 299

Query: 194 LDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253
           ++  I L  ++                                             L  +
Sbjct: 300 INTGIDLEMSWL-----------------------------------------NYVLLGK 318

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
           V   +     A + +  +  + P   +LY     +    + +V   +  ++K ++ +
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI---FQTSVPYVVPYLDKFLASE 372

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 12/162 (7%)

Query: 50  ELTNGDTNESHELDLLSKAKRAFEHED---YLTAIRHCTEEIESTSSNHTKALARLLRAT 106
            L     +    L    +A     H D      A     E ++S+        AR  +A 
Sbjct: 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---TYARAEKAL 241

Query: 107 VYIFTSQ----STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS-DFTKAFADLD 161
           V I          K +  L   +++    P++   + I +             +++  ++
Sbjct: 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301

Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
               ++ +   +Y   G++Y + G   EA         L P 
Sbjct: 302 TGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 10/79 (12%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
              +++  ++    ++ +   +Y   G++Y + G   EA         L P  +      
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350

Query: 524 HFVWTSTLAELMAFSDEFM 542
           + ++ +++  ++ + D+F+
Sbjct: 351 NGIFQTSVPYVVPYLDKFL 369

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 458 QKHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
                        ++D    +    N++  Y  +     + G+ +E+ + ++  I L  +
Sbjct: 250 HPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309

Query: 516 F 516
           +
Sbjct: 310 W 310

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
            +LK+     D     ++    +A    ++   + AE +F      D  N    +  A  
Sbjct: 23  ATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA- 78

Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
           + Q +    +A  L   A ++ K+        G  +++     +A +CF   +  + DE 
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 18/165 (10%), Positives = 37/165 (22%), Gaps = 41/165 (24%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
             A  D   + A L +   +  ++ D  Y     +   G+ EEA          +     
Sbjct: 12  STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV- 70

Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
                                                  +     A +   +E F  A +
Sbjct: 71  ---------------------------------------DYIMGLAAIYQIKEQFQQAAD 91

Query: 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
            +  +  +   + +   H             +A +  E  I    
Sbjct: 92  LYAVAFALGKNDYTPVFHTGQC-QLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 42/146 (28%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
            +      +A          D    D       IY +  Q+++A        AL  N + 
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
                                                         Q  +  +    A+E
Sbjct: 106 PVFHT----------------------------------------GQCQLRLKAPLKAKE 125

Query: 267 YFNRSIRVDPENASLYVHRAMLMLQA 292
            F   I+   +       +A   L A
Sbjct: 126 CFELVIQHSNDEK--LKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 8/125 (6%)

Query: 87  EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146
           +I +   +    +     A  +    +  +A      L      D    V+  +  A + 
Sbjct: 27  DINAIPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCI---YDFY-NVDYIMGLAAI- 79

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
                 F +A      A  +  N     +  GQ         +A    +  I  + +  +
Sbjct: 80  YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

Query: 207 A-RAQ 210
             +AQ
Sbjct: 140 KIKAQ 144

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 16/56 (28%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
              +A          D    D       IY +  Q+++A        AL  N +  
Sbjct: 51  RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 1/64 (1%)

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
                F +A      A  +  N     +  GQ         +A    +  I  + +  + 
Sbjct: 81  QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140

Query: 520 -RAQ 522
            +AQ
Sbjct: 141 IKAQ 144

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%)

Query: 451 NLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
           N+        A  D   + A L +   +  ++ D  Y     +   G+ EEA        
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 511 ALNPNFHVA 519
             +      
Sbjct: 64  IYDFYNVDY 72

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 39/189 (20%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
           +     V+      D+  A         V    +   +  G +Y +     EA +   ++
Sbjct: 8   SLWNEGVL-AADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR--------NFVDTHSNVVEACT 249
           I  + +  VA  QR  + ++       E+ + ++K+ +        N +  +  +     
Sbjct: 64  INRDKHLAVAYFQRGMLYYQT------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117

Query: 250 LF--------AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
           LF        A +   +E++  AEE    +  +  E                  +D+A++
Sbjct: 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-------------RHSKIDKAME 164

Query: 302 LIEKAISID 310
            + K    +
Sbjct: 165 CVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA-LNPNFHVARAQ 522
           + T+A      +   D ++A +Y+QRG +Y    +Y+ A+++L + +  L  N  +    
Sbjct: 52  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111

Query: 523 RHFVWTSTLAE 533
               +     E
Sbjct: 112 LGLQFKLFACE 122

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
           NE        D+  A         V    +   +  G +Y +     EA +   ++I  +
Sbjct: 11  NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 514 PNFHVARAQR 523
            +  VA  QR
Sbjct: 68  KHLAVAYFQR 77

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 450 GNLENESGQ-KHAASDFTKAFADLDE---------AEKVDPNVADSYYQRGQIYCLFGQY 499
           G L  ++ +   A  D  +A   L             +      +  Y    +Y    ++
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137

Query: 500 EEALRNLDKTIALNPN 515
           ++A   L    ++   
Sbjct: 138 KKAEEQLALATSMKSE 153

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.4 bits (166), Expect = 7e-14
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
           N  +   N+             Q D+D A EY+ +++ +DP NA  + +        +G+
Sbjct: 7   NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            DEAI+  +KA+ +D +   A+  LG    ++G  +EA++ + KAL L  + AE
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 41/154 (26%)

Query: 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188
           ++DP     A         +   D+ +A     +A ++DPN A+++Y  G  Y   G Y+
Sbjct: 2   AMDPGNSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

Query: 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
           EA+    K + L+PN   A                                   N+    
Sbjct: 61  EAIEYYQKALELDPNNAEA---------------------------------WYNL---- 83

Query: 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
                    Q D+D A EY+ +++ +DP NA   
Sbjct: 84  ---GNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 51.2 bits (124), Expect = 3e-08
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +AIE   + +E   +DP     A         +   D+ +A     +A ++DPN A+++Y
Sbjct: 27  EAIEYYQKALE---LDPN-NAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWY 81

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
             G  Y   G Y+EA+    K + L+PN   A
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D+ +A     +A ++DPN A+++Y  G  Y   G Y+EA+    K + L+PN   A
Sbjct: 58  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D+ +A     +A ++DPN A+++Y  G  Y   G Y+EA+    K + L+PN   A
Sbjct: 24  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            N A+++Y  G  Y   G Y+EA+    K + L+PN   A
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
              Q+DF+ A  +++++I +DP N + Y ++A +         E ++  EKA+ + +   
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAV-YFEEKKFAECVQFCEKAVEVGRETR 76

Query: 315 F-------AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
                   A    G    ++  L  AV+ F+++L   RD   +  +
Sbjct: 77  ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
             + A +    G        +E+A  + DK I L+P+       +  V  +         
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---KKFAE 60

Query: 227 V----EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
                E++++  R     +  + +A +        Q D   A ++F+RS+    +   +
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
           + +    +L N     +   DF KA    D+A ++DP+    Y  +  +Y    ++ E +
Sbjct: 6   DAAIAEKDLGNA---AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 RNLDKTIALNPNFHVARAQR 523
           +  +K + +           
Sbjct: 63  QFCEKAVEVGRETRADYKLI 82

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------ 169
           KA     + +E   +DP      +  +A V+      F +     ++A +V         
Sbjct: 26  KAHVHYDKAIE---LDPSNIT-FYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYK 80

Query: 170 -VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
            +A +  + G  +        A++   ++++   +
Sbjct: 81  LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 28/66 (42%)

Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
              + + ++A    +KAI +D S +  Y     +  +  +  E V+   KA+ + R+   
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77

Query: 350 LSHIYS 355
              + +
Sbjct: 78  DYKLIA 83

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 30/309 (9%)

Query: 67  KAKRAFEHEDYLTAIRHCTE--EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL 124
           +A+ A    +   A R      E       +++ +A  +   V     + T+++  + Q 
Sbjct: 20  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 125 VE--DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSY 174
            +           + + I+++ + L A      A+   ++A ++         P      
Sbjct: 80  EQMARQHDVWHYALWSLIQQSEI-LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138

Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV--HKMIVPGDRERVEQSLK 232
             R Q+   + + +EA  +    I +  ++   +  +   +     +  GD +     L 
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198

Query: 233 EFRNFVDTHSNVVEACTLFAQVLV----DQEDFDGAEEYFNRSIRVDPEN----ASLYVH 284
              N +       +  +   +V V       D   A  +   + + +  N       + +
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258

Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET------LGTIEVQRGRLEEAVKCFN 338
            A   +   G  + A  ++E+     +S     +       L  +  Q GR  +A +   
Sbjct: 259 IARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317

Query: 339 KALPLARDE 347
            AL LA   
Sbjct: 318 DALKLANRT 326

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 26/302 (8%)

Query: 86  EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD-PKIKVNAHIKRAV 144
            EI+    +   A    LRA V I      +A       +E+        ++ A      
Sbjct: 2   HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE 61

Query: 145 VHLHAASDFTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
           V  H   + T++ A + + E++            S  Q+ +I    G  + A    +K  
Sbjct: 62  VL-HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120

Query: 199 ALNPNFHVARAQRHFVVHKMIVP-----GDRERVEQSLKEFRNFVDT--HSNVVEACTLF 251
            L    H+ +   H  + ++           +  E S +     + +      ++   + 
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 305
            Q  + + D D A    NR   +           +          Q  G+   A   +  
Sbjct: 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240

Query: 306 AISIDKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-IYSLRDAA 360
               + +        +  +   ++  G  E A     +    AR    +S    +L    
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300

Query: 361 IA 362
             
Sbjct: 301 QL 302

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 19/205 (9%)

Query: 177 RGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVV-HKMIVPGDRERVEQSLKEF 234
           R Q+    G  +EA R     +   P  +  +R     V+   +   G+  R    +++ 
Sbjct: 20  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 235 RNF---VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 283
                  D     + +    +++L  Q     A E   ++ ++         P +  L  
Sbjct: 80  EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139

Query: 284 HRAMLMLQARGNVDEAIKLIEKAISI-----DKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
            RA L L A   +DEA       I +      +  +     L    + RG L+ A    N
Sbjct: 140 IRAQL-LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198

Query: 339 KALPLARDEAELSHIYSLRDAAIAQ 363
           +   L  +    S   S  +     
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVI 223

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 40/273 (14%), Positives = 95/273 (34%), Gaps = 23/273 (8%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKAI 307
           AQV ++  + D AE     ++   P         A  +L      +G +  ++ L+++  
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80

Query: 308 SIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
            + +        +++      I   +G L+ A +   KA  L   E  L  +        
Sbjct: 81  QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN-EQHLEQLPMHEFLVR 139

Query: 362 AQMKVC-ERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DY 419
            + ++      + +  +     I        +Q  +   ++I+ +   G    +D A   
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---LDNARSQ 196

Query: 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479
             ++ ++L +  Y     D      +          +G K AA+++ +  A  + A   +
Sbjct: 197 LNRLENLLGNGKYHS---DWISNANKV--RVIYWQMTGDKAAAANWLRHTAKPEFAN--N 249

Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
             +   +    +   L G++E A   L++    
Sbjct: 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
            +  E+F+ A  ++ ++I ++P NA  + +RA     L   GN   A++  E+AI ID +
Sbjct: 22  QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPA 78

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
              AY  +G       +  EAV  + KAL L  D    
Sbjct: 79  YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 31/172 (18%), Positives = 48/172 (27%), Gaps = 44/172 (25%)

Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221
              + D   A+     G        +E A+    K I LNP   V    R          
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR---------- 52

Query: 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
                                         A       ++ GA +   R+I +DP  +  
Sbjct: 53  ------------------------------AAAYSKLGNYAGAVQDCERAICIDPAYSKA 82

Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
           Y    +  L +     EA+   +KA+ +D         L   E    +L EA
Sbjct: 83  YGRMGLA-LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE---LKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 51/160 (31%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
                +F  A     +A +++P  A  +  R   Y   G Y  A+++ ++ I ++P +  
Sbjct: 22  QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81

Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
           A  +                                            L        A  
Sbjct: 82  AYGRM----------------------------------------GLALSSLNKHVEAVA 101

Query: 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
           Y+ +++ +DP+N              + N+  A   + +A
Sbjct: 102 YYKKALELDPDNE-----------TYKSNLKIAELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            A+    + +E   ++P   V     RA  +     ++  A  D + A  +DP  + +Y 
Sbjct: 30  AAVHFYGKAIE---LNPANAV-YFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYG 84

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
           + G       ++ EA+    K + L+P+    ++       K+
Sbjct: 85  RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
            E+E+     NE   +    +F  A     +A +++P  A  +  R   Y   G Y  A+
Sbjct: 10  AEAERLKTEGNE---QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 504 RNLDKTIALNPNFHVA 519
           ++ ++ I ++P +  A
Sbjct: 67  QDCERAICIDPAYSKA 82

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           ++  A  D + A  +DP  + +Y + G       ++ EA+    K + L+P+    ++  
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 474 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---RAQ 522
              + D   A+     G        +E A+    K I LNP   V    RA 
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAA 54

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
               E     +    +N  L               D A+  +  A+  D +   A++ LG
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAEL 350
                +G    A + +   L  A+   + 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 17/146 (11%), Positives = 38/146 (26%), Gaps = 40/146 (27%)

Query: 156 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215
               L+       +     +  G+ Y    Q++ AL +L   +  +P +           
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----------- 52

Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275
                                          A     + L  Q D  GA + +   +   
Sbjct: 53  -----------------------------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 276 PENASLYVHRAMLMLQARGNVDEAIK 301
                  V + + +   R   ++A++
Sbjct: 84  QSRGDQQVVKELQVFLRRLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
           ER+E  L +  + +     +        +   + E FD A  +   ++  DP  +  +  
Sbjct: 6   ERLEAMLAQGTDNMLLRFTL-------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58

Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRGRLEEA 333
                LQ +G+   A +  E  ++  +S       + L     +  R +  
Sbjct: 59  LG-KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
             E L  ++   + +                     F  A   L  A   DP  + ++  
Sbjct: 4   ITERLEAMLAQGTDNML----LRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKW 58

Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
            G+     G    A +  +  +A   +    +  +
Sbjct: 59  LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
            F  A   L  A   DP  + ++   G+     G    A +  +  +A   +    +  +
Sbjct: 34  QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
               L+       +     +  G+ Y    Q++ AL +L   +  +P + VA
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           +    + +E  ++     M    TLG    +  + + A+     AL      + 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
              +  A   + R+I  +P  A  Y +RA+  L+     ++A+    +A+ +D   + A+
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 75

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
             LG  +++    +EA+    +A  LA+++             IA+ K       ++   
Sbjct: 76  FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 135

Query: 378 PRSQNITKNEKLAIKQLRENNDI 400
               +      +A ++ RE  + 
Sbjct: 136 ESELHSYLTRLIAAERERELEEC 158

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 29/198 (14%), Positives = 66/198 (33%), Gaps = 9/198 (4%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A     + +    +      N    RA+ +L       +A AD   A ++D     +++
Sbjct: 22  EAAACYGRAITRNPLVAVYYTN----RALCYLKM-QQPEQALADCRRALELDGQSVKAHF 76

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
             GQ       Y+EA+ NL +  +L     +          ++     +++   S++E R
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----KKKRWNSIEERR 132

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
              ++  +      + A+   + E+     E       +  + A +       M      
Sbjct: 133 IHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192

Query: 296 VDEAIKLIEKAISIDKSC 313
             +  +  +K    D  C
Sbjct: 193 FSQVDEKRKKRDIPDYLC 210

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
              +A AD   A ++D     +++  GQ       Y+EA+ NL +  +L     +    
Sbjct: 53  QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DK 311
           +  D  ++  + + F ++I++DPE +  ++ +    L      +EA+      I++  D+
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDE 73

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
                +             E   +      
Sbjct: 74  YNKDVWAAKADALRYIEGKEVEAEIAEARA 103

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 61.7 bits (151), Expect = 5e-12
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 43/147 (29%)

Query: 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225
           +     + YY  G +    G Y E++   +K I L+P                       
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY------------------ 42

Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR--SIRVDPENASLYV 283
                                      + L + E ++ A + +N   ++  D  N  ++ 
Sbjct: 43  ---------------WLMK-------GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80

Query: 284 HRAMLMLQARGNVDEAIKLIEKAISID 310
            +A   L+     +   ++ E    ++
Sbjct: 81  AKADA-LRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 196
             +    V+  + A ++T++    ++A ++DP  +  +  +G+      +YEEA+   + 
Sbjct: 7   EEYYLEGVL-QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 197 TIALNPNFHVARA 209
            I +  + +    
Sbjct: 66  VINVIEDEYNKDV 78

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
           +  +N   Y     ++    GN  E+I L EKAI +D      +   G       R EEA
Sbjct: 1   MVDQNPEEYYLEG-VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59

Query: 334 VKCFNKALPLARD 346
           V C+N  + +  D
Sbjct: 60  VDCYNYVINVIED 72

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 10/58 (17%), Positives = 28/58 (48%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
           ++T++    ++A ++DP  +  +  +G+      +YEEA+   +  I +  + +    
Sbjct: 21  NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 10/92 (10%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA--EKVDPNVADS 173
           ++I+   + ++   +DP+ +    + +    L+    + +A    +       D    D 
Sbjct: 24  ESIDLFEKAIQ---LDPE-ESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
           +  +          E      +    L  + H
Sbjct: 79  WAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +     + YY  G +    G Y E++   +K I L+P     
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 6/53 (11%), Positives = 12/53 (22%), Gaps = 2/53 (3%)

Query: 467 KAFADLDEA--EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517
           +A    +       D    D +  +          E      +    L  + H
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 27/234 (11%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNLDKTIALNPN 203
            +      +    ++D+ +     + + Y+   RG       +Y  A++   K  +    
Sbjct: 76  RIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135

Query: 204 F--HVARAQRHF---VVHKMIVPGDRER----VEQSLKEFRNFVDTHSNVVEACTLFAQV 254
               + +A+  F     +  +             Q+ + ++     +  +++  +LFA  
Sbjct: 136 VKDRIEKAEFFFKMSESYYYM--KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193

Query: 255 LVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
            +D + ++ A  +F ++  +               +   L   ++   ++AI   ++AI+
Sbjct: 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG-LCKNSQSQYEDAIPYFKRAIA 252

Query: 309 IDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
           + +          AY  +  I  + G++++A +  +K +  ++   ++ ++   
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 36/322 (11%), Positives = 92/322 (28%), Gaps = 31/322 (9%)

Query: 60  HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHT---KALARLLRATVYIFTSQSTK 116
           H L L           +    +     EI+   +  T   +      R    +   +   
Sbjct: 62  HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121

Query: 117 AIEDLTQ---LVEDTSVDPKIKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVD 167
           AI+   +    +     D   K     K +  + +      +     +A+    E E  +
Sbjct: 122 AIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHF---VVHKMIVPG 222
             +   +      +    QYE+A+ +  K  ++           +  +   +        
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ--S 238

Query: 223 DRER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
             E      ++++  F    +   ++ +A  L  Q+       D A EY ++ +    + 
Sbjct: 239 QYEDAIPYFKRAIAVFEE-SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI-DKSCMF-----AYETLGTIEVQRGRLEE 332
             +        L++        + I+      +   ++         +     +R   ++
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQK 357

Query: 333 AVKCFNKALPLARDEAELSHIY 354
           A   F K   + +       +Y
Sbjct: 358 ASAYFLKVEQVRQLIQGGVSLY 379

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 21/114 (18%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
              +  A   + R+I  +P  A  Y +RA+  L +      ++A+    +A+ +D   + 
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALELDGQSVK 78

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369
           A+  LG  +++    +EA+    +A  LA+++       +  D   + +++ ++
Sbjct: 79  AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-----NFGDDIPSALRIAKK 127

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
            +AI            +P + V  +  RA+ +L       +A AD   A ++D     ++
Sbjct: 33  GRAIT----------RNPLVAV-YYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAH 80

Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPN 203
           +  GQ       Y+EA+ NL +  +L   
Sbjct: 81  FFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
              +A AD   A ++D     +++  GQ       Y+EA+ NL +  +L   
Sbjct: 58  QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
           ++++  A + + +++ + P N     +RA     + G  ++A +  E A  +D     A+
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAW 82

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPL 343
             LG         + A + + K +  
Sbjct: 83  SRLGLARFDMADYKGAKEAYEKGIEA 108

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
           T+A+           + P   +     RA  +  A+    KA  D + A  VDP  + ++
Sbjct: 35  TQALS----------IAPANPI-YLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAW 82

Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
            + G        Y+ A    +K I    N      +R  
Sbjct: 83  SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 42/173 (24%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
           A  +++KA     +A  + P        R   Y   GQ+E+A  + +    ++P +    
Sbjct: 23  ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---- 78

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
                                                +A +       D  D+ GA+E +
Sbjct: 79  ------------------------------------SKAWSRLGLARFDMADYKGAKEAY 102

Query: 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
            + I  +    S  + R +   + +  ++EA +  E           A    G
Sbjct: 103 EKGIEAEGNGGSDAMKRGLETTKRK--IEEANRGAEPPADDVDDAAGASRGAG 153

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 66  SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQ 123
           S+   A   ++Y  AI   T+ +    +N        L  RA  Y  + Q  KA ED   
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPI-----YLSNRAAAYSASGQHEKAAEDAEL 70

Query: 124 LVEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG 178
                 VDPK  K  A  +  +      +D+  A    ++  + + N      +RG
Sbjct: 71  ATV---VDPKYSK--AWSRLGLAR-FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
              KA  D + A  VDP  + ++ + G        Y+ A    +K I    N      +R
Sbjct: 60  QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119

Query: 524 HF 525
             
Sbjct: 120 GL 121

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 14/76 (18%), Positives = 33/76 (43%)

Query: 441 KTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 500
           +++  + +   L++E     A  +++KA     +A  + P        R   Y   GQ+E
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 501 EALRNLDKTIALNPNF 516
           +A  + +    ++P +
Sbjct: 63  KAAEDAELATVVDPKY 78

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 42/183 (22%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
               +D     G       +Y +A+    + +++ P   +  + R               
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR--------------- 51

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
                                    A         + A E    +  VDP+ +  +    
Sbjct: 52  -------------------------AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86

Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
           +       +   A +  EK I  + +        G +E  + ++EEA +          D
Sbjct: 87  LA-RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEANRGAEPPADDVDD 144

Query: 347 EAE 349
            A 
Sbjct: 145 AAG 147

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 44/317 (13%), Positives = 83/317 (26%), Gaps = 30/317 (9%)

Query: 62  LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDL 121
           LD L   K           +    E  +   +   K  +   R        +  +AI   
Sbjct: 66  LDYLEPGKTYGNRPTVTELLET-IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYY 124

Query: 122 TQ---LVEDTSVDPKIKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVDPNVAD 172
            +    +   S D   K   H K A  + H      +     +A                
Sbjct: 125 REAEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHF---VVHKMIVPGDRER- 226
           S +     Y  F  Y++AL +L+  + L          A         +     GD +  
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMA 241

Query: 227 ---VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
               +++ K  R        + +     +  L        A ++    +      +  + 
Sbjct: 242 VEHFQKAAKVSRE--KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299

Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMF------AYETLGTIEVQRGRLEEAVKCF 337
               L LQA        + I   +S  +             +   +       E+A   +
Sbjct: 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFY 359

Query: 338 NKALPLARDEAELSHIY 354
            K L    D  +   +Y
Sbjct: 360 RKVLKAQEDILKGECLY 376

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 28/233 (12%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNLDKTIALNPNF-- 204
                T+    ++  +K    +   Y    RG       +Y EA+    +     P    
Sbjct: 77  NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD 136

Query: 205 HVARAQRHF---VVHKMIVPGDRER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
            + +A+ HF     +  +           + Q+L  ++N        +++  + A    D
Sbjct: 137 DIEKAEFHFKVAEAYYHM--KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLML--------QARGNVDEAIKLIEKAISI 309
            + +D A  +   ++ +  +   +   R + +            G+   A++  +KA  +
Sbjct: 195 FKHYDKALPHLEAALELAMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251

Query: 310 DKSCMF-----AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
            +  +          L     + G+ ++A +   + L      +   +     
Sbjct: 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 39/378 (10%), Positives = 100/378 (26%), Gaps = 86/378 (22%)

Query: 165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
           + D ++   Y      + L   Y E  +                              +R
Sbjct: 46  EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYG---------------------------NR 78

Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRV------DP 276
             V + L+         + +++  +LF       DQ+++  A  Y+  + +       D 
Sbjct: 79  PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI 138

Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI-------DKSCMFAYETLGTIEVQRGR 329
           E A  +   A            ++  I +A+ I           + +   +         
Sbjct: 139 EKAEFHFKVAEA-YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197

Query: 330 LEEAVKCFNKALPLAR---DEAELSHIYS----------LRDAAIAQMKVCERYNIKKKV 376
            ++A+     AL LA    ++  ++                  A+   +  +   + ++ 
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSREK 255

Query: 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DYTQKMTSILNSNDYEII 435
            P                      +     K G+T    KA  + ++    + +  ++  
Sbjct: 256 VPDLLPKVLFG-------------LSWTLCKAGQT---QKAFQFIEEGLDHITARSHK-- 297

Query: 436 PGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 495
                      E +  L+    +           +   E + +   +         ++  
Sbjct: 298 --------FYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFES 348

Query: 496 FGQYEEALRNLDKTIALN 513
              +E+A     K +   
Sbjct: 349 SCHFEQAAAFYRKVLKAQ 366

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-- 315
           ++DFD A ++++++  +DP N +   ++A +  + +G+ ++  +L EKAI + +      
Sbjct: 17  KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDY 75

Query: 316 -----AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
                AY  +G    +  + ++A+  +NK+L   R    L       
Sbjct: 76  RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 33/135 (24%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
            +   DF  A    D+A+++DP        +  +Y   G Y +     +K I +      
Sbjct: 14  AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73

Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
                                             +  + +A          +E +  A  
Sbjct: 74  D---------------------------------YRQIAKAYARIGNSYFKEEKYKDAIH 100

Query: 267 YFNRSIRVDPENASL 281
           ++N+S+        L
Sbjct: 101 FYNKSLAEHRTPDVL 115

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
           +++ K   L N+    +   DF  A    D+A+++DP        +  +Y   G Y +  
Sbjct: 2   KQALKEKELGND---AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR 58

Query: 504 RNLDKTIALNPNFHVARAQR 523
              +K I +         Q 
Sbjct: 59  ELCEKAIEVGRENREDYRQI 78

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 19/104 (18%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN----- 169
            KA E          +DP         +A V+     D+ K     ++A +V        
Sbjct: 28  DKAKE----------LDPTNMT-YITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDY 75

Query: 170 --VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
             +A +Y + G  Y    +Y++A+   +K++A +    V +  +
Sbjct: 76  RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
                 KA     E  +    +A +Y + G  Y    +Y++A+   +K++A +    V +
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 521 AQR 523
             +
Sbjct: 117 KCQ 119

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
           + D+  A  ++N +++ DPENA LY +RA     L        A+   +  I +D   + 
Sbjct: 26  KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK 82

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
            Y       V      +A + +  AL +     E 
Sbjct: 83  GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           RA        +F +A  D D   ++D      Y ++        ++ +A R  +  + ++
Sbjct: 53  RAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111

Query: 202 PN 203
           P+
Sbjct: 112 PS 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           +F +A  D D   ++D      Y ++        ++ +A R  +  + ++P+
Sbjct: 62  EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 67  KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQL 124
           K    F+  DY TA+RH  E ++    N       L   RA       +  +A++D    
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVKRDPENAI-----LYSNRAACLTKLMEFQRALDDCDTC 73

Query: 125 VEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
           +    +D K IK   +I++A     A  +++KA    ++A +VDP+  +
Sbjct: 74  IR---LDSKFIK--GYIRKAACL-VAMREWSKAQRAYEDALQVDPSNEE 116

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334
           DPE+       A        N   A+ L E+ +  D   +  Y  LG +  +  R ++A+
Sbjct: 3   DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 335 KCFNKALPLARDEAE 349
             + + + +AR+E  
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
           AQ  +  ++   A   F   +  DP+    Y H   L  +     D+AI    + I + +
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDAIDTYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 40/121 (33%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
           DP    + Y   Q +        AL   ++ +  +P++                      
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---------------------- 40

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
                             V       ++    +  D A + + + I V  E  +      
Sbjct: 41  ------------------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82

Query: 287 M 287
           +
Sbjct: 83  L 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 11/65 (16%), Positives = 27/65 (41%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
                + ++A A  +E  + DP+   +YY  G++Y    + ++A+    + I +      
Sbjct: 17  HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76

Query: 207 ARAQR 211
            +   
Sbjct: 77  QKDLS 81

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
           + ++A A  +E  + DP+   +YY  G++Y    + ++A+    + I +       +   
Sbjct: 22  NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           DP    + Y   Q +        AL   ++ +  +P++   
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT 43

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
              + D+  A +++  +I+ +P++A LY +RA     L        A+K  E+ I ++ +
Sbjct: 26  CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPT 82

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
            +  Y              +A+  + KAL L     E +     +   +AQ
Sbjct: 83  FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD--GYQRCMMAQ 131

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 41/167 (24%)

Query: 161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220
                ++P++A     +G      G Y +A+++  + I  NP      + R         
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR--------- 56

Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
                                          A       +F  A +     I+++P    
Sbjct: 57  -------------------------------AACYTKLLEFQLALKDCEECIQLEPTFIK 85

Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
            Y  +A   L+A  +  +A+ + +KA+ +D SC  A +      + +
Sbjct: 86  GYTRKAAA-LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           RA  +     +F  A  D +E  +++P     Y ++         Y +A+    K + L+
Sbjct: 56  RAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114

Query: 202 PN 203
            +
Sbjct: 115 SS 116

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           +F  A  D +E  +++P     Y ++         Y +A+    K + L+ +
Sbjct: 65  EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 67  KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQL 124
           K    F+  DY  A++H TE I+    +     A+L   RA  Y    +   A++D  + 
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 125 VEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
           ++   ++P  IK   + ++A     A  D+TKA     +A  +D +  +     G   C+
Sbjct: 77  IQ---LEPTFIK--GYTRKAAALE-AMKDYTKAMDVYQKALDLDSSCKE--AADGYQRCM 128

Query: 184 FGQY 187
             QY
Sbjct: 129 MAQY 132

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 40/134 (29%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
              D+ +A     EA K +P  A  Y  R   Y    +++ AL++ ++ I L P F    
Sbjct: 28  QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 83

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
                                               ++  T  A  L   +D+  A + +
Sbjct: 84  ------------------------------------IKGYTRKAAALEAMKDYTKAMDVY 107

Query: 269 NRSIRVDPENASLY 282
            +++ +D       
Sbjct: 108 QKALDLDSSCKEAA 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 427 LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSY 486
           +  + +     +P   +    K GN      +     D+ +A     EA K +P  A  Y
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNK-GN------ECFQKGDYPQAMKHYTEAIKRNPKDAKLY 53

Query: 487 YQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
             R   Y    +++ AL++ ++ I L P F
Sbjct: 54  SNRAACYTKLLEFQLALKDCEECIQLEPTF 83

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
           + D+  A + +   I+  PE+A  Y +RA     L    +  EAI    KAI  D + + 
Sbjct: 17  KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEKDPNFVR 73

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369
           AY    T ++       A++  + A      +AE+++  S R+      K  ++
Sbjct: 74  AYIRKATAQIAVKEYASALETLDAARTK---DAEVNNGSSAREIDQLYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           RA         F +A AD ++A + DPN   +Y ++        +Y  AL  LD     +
Sbjct: 44  RAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102

Query: 202 PNFHVARAQR 211
              +   + R
Sbjct: 103 AEVNNGSSAR 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
            F +A AD ++A + DPN   +Y ++        +Y  AL  LD     +   +   + R
Sbjct: 53  SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 40/145 (27%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
             SD+  A     E  K  P  A  Y  R         + EA+ + +K I  +PNF  A 
Sbjct: 16  TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
            ++                                        A   +  +++  A E  
Sbjct: 76  IRK----------------------------------------ATAQIAVKEYASALETL 95

Query: 269 NRSIRVDPENASLYVHRAMLMLQAR 293
           + +   D E  +    R +  L  +
Sbjct: 96  DAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
             SD+  A     E  K  P  A  Y  R         + EA+ + +K I  +PNF
Sbjct: 16  TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
            +D++ A ++++++I ++P NA  Y +R++  L          A+    +AI +DK  + 
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIK 82

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
            Y       +  G+   A++ +   + +   + +          A  + + C +  +K+K
Sbjct: 83  GYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----------AKMKYQECNKI-VKQK 131

Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKG 408
              R+    ++++  +  L +   + I     G
Sbjct: 132 AFERAIAGDEHKRSVVDSL-DIESMTIEDEYSG 163

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           R++ +L     +  A  D   A ++D      YY+R       G++  ALR+ +  + + 
Sbjct: 53  RSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111

Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV---DTHSNVVEA 247
           P+   A+ +     +K++     ER     +  R+ V   D  S  +E 
Sbjct: 112 PHDKDAKMKYQ-ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 159

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
            +  A  D   A ++D      YY+R       G++  ALR+ +  + + P+
Sbjct: 62  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 59.1 bits (144), Expect = 5e-11
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
             + D A + ++ +I++DP N  LY +R+         G+  +A +   K + +      
Sbjct: 17  VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK 73

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
            Y           R EEA + + + L    +  +L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
           R+  +     D+ KA+ D  +   + P+    Y ++        ++EEA R  ++ +   
Sbjct: 44  RSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

Query: 202 PN 203
            N
Sbjct: 103 AN 104

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           D+ KA+ D  +   + P+    Y ++        ++EEA R  ++ +    N
Sbjct: 53  DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 443 IEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 502
           +E+  +     N+     +  +   A     EA K+DP+    Y  R   Y   G Y++A
Sbjct: 1   MEQVNELKEKGNK---ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57

Query: 503 LRNLDKTIALNPNF 516
             +  KT+ L P++
Sbjct: 58  YEDGCKTVDLKPDW 71

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 40/133 (30%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
           +  +   A     EA K+DP+    Y  R   Y   G Y++A  +  KT+ L P++    
Sbjct: 16  SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---- 71

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
                                                +  +  A  L     F+ A+  +
Sbjct: 72  ------------------------------------GKGYSRKAAALEFLNRFEEAKRTY 95

Query: 269 NRSIRVDPENASL 281
              ++ +  N  L
Sbjct: 96  EEGLKHEANNPQL 108

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
              ++   +   A   F    + +PE    +     L          AI  +  A  +D 
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG-LTQAENEKDGLAIIALNHARMLDP 82

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
             +  +  L            A+      L
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWL 112

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 275 DPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
           +  N  +Y    M   L +    N+ EA    E     +     A+ +LG  + +  +  
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68

Query: 332 EAVKCFNKALPLARDEAE 349
            A+   N A  L   +  
Sbjct: 69  LAIIALNHARMLDPKDIA 86

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 14/140 (10%), Positives = 31/140 (22%), Gaps = 41/140 (29%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
            ++  + G          EA    +      P                            
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------------------- 50

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
                          EA         + E    A    N +  +DP++ +++   A+   
Sbjct: 51  --------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS-H 95

Query: 291 QARGNVDEAIKLIEKAISID 310
               N + A+  +   +   
Sbjct: 96  TNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
             A     +           A   L+ A  +DP     +      +        AL +L 
Sbjct: 51  EEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

Query: 196 KTIALNPNFH 205
             +   P + 
Sbjct: 110 AWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 457 GQKHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           G   A ++    A   L+ A  +DP     +      +        AL +L   +   P 
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

Query: 516 FH 517
           + 
Sbjct: 118 YE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
           N+ DY     +P    E   + G    +        +  +A    +   + +P   +++ 
Sbjct: 2   NNTDYPFEANNPYMYHENPMEEGLSMLKLA------NLAEAALAFEAVCQKEPEREEAWR 55

Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
             G       +   A+  L+    L+P      
Sbjct: 56  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 13/150 (8%), Positives = 37/150 (24%), Gaps = 41/150 (27%)

Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
           P +     ++  +  +   ++  +A    +   + +P   +++   G       +   A+
Sbjct: 13  PYMYHENPMEEGLS-MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
             L+    L+P      A                                          
Sbjct: 72  IALNHARMLDPKDIAVHAAL---------------------------------------- 91

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
           A    ++ + + A       +   P+   L
Sbjct: 92  AVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 25/215 (11%), Positives = 57/215 (26%), Gaps = 38/215 (17%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF---VVHKMIVPGD 223
             ++       G+  C  G     +      I          +  +      +  +  GD
Sbjct: 44  GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--GD 101

Query: 224 RER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD---- 275
             +     +  L   ++  D      ++       L     FD A     R + +     
Sbjct: 102 YNKAMQYHKHDLTLAKSMND-RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 276 --PENASLY-----VHRAM-----------LMLQARGNVDEAIKLIEKAISI-----DKS 312
                         V+ A                 +  +  A++  ++ + +     D+ 
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220

Query: 313 CM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
               A   LG      G  + A++   + L +AR+
Sbjct: 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 38/296 (12%), Positives = 86/296 (29%), Gaps = 48/296 (16%)

Query: 76  DYLTAIRHCTEEIESTSSNHTKALARLLR--ATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133
           D    +      I++ + +  + L+ +       Y +     KA++          +   
Sbjct: 63  DCRAGVAFFQAAIQAGTEDL-RTLSAIYSQLGNAYFYLGDYNKAMQYHKH-----DLTLA 116

Query: 134 IKVNAHIKRAVVH------LHAASDFTKAFADLDEA----EKVD--PNVADSYYQRGQIY 181
             +N  +  A         L     F +A    +       ++    +   + Y  G +Y
Sbjct: 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176

Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH 241
              G++            +       RA   +              +++LK  R+  D  
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEAL--TRAVEFY--------------QENLKLMRDLGD-R 219

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-----MLQARGNV 296
                AC           DF  A E+    +R+  E       R             G  
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279

Query: 297 DEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
           ++A +  ++ +++            +  +LG           A++  N+ L +A++
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 62/324 (19%)

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYV 283
           + + ++     D  S++     L  + L +  D      +F  +I+   E+    +++Y 
Sbjct: 32  DGNSQQGSG-SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF 337
                     G+ ++A++  +  +++ KS         +   LG      GR +EA  C 
Sbjct: 91  QLGNA-YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC 149

Query: 338 NKALPLAR------DEAE-LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLA 390
            + L LAR       E   L ++       +   K   ++  ++       ++ +    A
Sbjct: 150 ERHLTLARQLGDRLSEGRALYNL-----GNVYHAK--GKHLGQRNPGKFGDDVKEALTRA 202

Query: 391 IKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS--NDYEIIPGDPTKTIEESEK 448
           ++  +EN  ++    D+G                    +  N Y ++ GD    IE  ++
Sbjct: 203 VEFYQENLKLMRDLGDRGA-------------QGRACGNLGNTYYLL-GDFQAAIEHHQE 248

Query: 449 YGNLENESGQK--HAAS------------DFTKAFADLDEA----EKV--DPNVADSYYQ 488
              +  E G +     +             F  A            ++      A S Y 
Sbjct: 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308

Query: 489 RGQIYCLFGQYEEALRNLDKTIAL 512
            G  Y L  ++  A+   ++ +A+
Sbjct: 309 LGNTYTLLHEFNTAIEYHNRHLAI 332

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 40/303 (13%), Positives = 88/303 (29%), Gaps = 62/303 (20%)

Query: 76  DYLTAIRHCTEEIE---STSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
                        +    +    +  L   L              +      ++      
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ------ 76

Query: 133 KIKVNAHIKRAVVH------LHAASDFTKAFA----DLDEAEKVD--PNVADSYYQRGQI 180
                     + ++           D+ KA      DL  A+ ++     A S    G  
Sbjct: 77  -AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135

Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240
             + G+++EA                   +RH  + + +  GDR    ++L    N  + 
Sbjct: 136 LKVMGRFDEAAICC---------------ERHLTLARQL--GDRLSEGRAL---YNLGNV 175

Query: 241 HSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--------LM 289
           +      +            +E    A E++  ++++  +   L    A           
Sbjct: 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNT 232

Query: 290 LQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPL 343
               G+   AI+  ++ + I     D++    A   LG   +  G+ E+A + + + L L
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

Query: 344 ARD 346
           A +
Sbjct: 293 AVE 295

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 27/161 (16%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIA----LNPNFHVARAQRHF-VVHKMIVPG 222
                +    G  Y L G ++ A+ +  + +             RA  +    H  +  G
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL--G 277

Query: 223 DRER----VEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDP 276
             E      +++L       +      EA + +          +F+ A EY NR + +  
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREV---EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334

Query: 277 ENASLYVHRAM--------LMLQARGNVDEAIKLIEKAISI 309
           E   L                  A G  + A+K  E+ + +
Sbjct: 335 E---LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 27/209 (12%), Positives = 61/209 (29%), Gaps = 46/209 (22%)

Query: 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
           A D+  A              + + +  G +Y    +++EA  +                
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASF--------------- 49

Query: 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
                             +   ++ +   D H+    A      V     ++D A   F 
Sbjct: 50  ------------------QALQQQAQKSGD-HTAEHRALHQVGMVERMAGNWDAARRCFL 90

Query: 270 RSIRVDPENASLYVHRAM------LMLQARGNVDEAIKLIEKAISI-----DKSCM-FAY 317
               +        +  +        +    G++  A +  EK++       D+  +  A+
Sbjct: 91  EERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARD 346
             LG +  Q   L EA + + +A  +  +
Sbjct: 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 71/594 (11%), Positives = 178/594 (29%), Gaps = 177/594 (29%)

Query: 12  EEISKRSFF----KPSKQFIKTYLKSFPNDP-------ILQPDGLSNGVE-LTNGDTNES 59
           EE+ ++ F     + + +F+ + +K+    P       I Q D L N  +     + +  
Sbjct: 76  EEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 60  HELDLLSKAKRAFEHEDYLT------------AIRHC-TEEIESTSSNH----------- 95
                L +A         +             A+  C + +++                 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 96  TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTK 155
            + +  +L+  +Y           + T    D S + K+++++ I+  +  L  +  +  
Sbjct: 195 PETVLEMLQKLLYQIDP-------NWTSR-SDHSSNIKLRIHS-IQAELRRLLKSKPYEN 245

Query: 156 AFADLDEAEKV-DPNVADSYYQRGQIYCLFGQYEEALRNL----DKTIALNPNFHVARAQ 210
               L     V +    +++     + C         + L     K +    +F  A   
Sbjct: 246 CLLVLLN---VQNAKAWNAF----NLSC---------KILLTTRFKQVT---DFLSAATT 286

Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV--EACT-------LFAQVLVD---- 257
            H  +    +    +   +       ++D     +  E  T       + A+ + D    
Sbjct: 287 THISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 258 -----QEDFDGAEEYFNRSIRV-DP-ENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
                  + D        S+ V +P E   ++   ++           +  +    +S+ 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--------PSAHIPTILLSL- 394

Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS-HIYSL------RDAAIAQ 363
                 +  +   +V         K    +L + +   E +  I S+      +      
Sbjct: 395 -----IWFDVIKSDVM----VVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 364 M--KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK------GGKTVVMD 415
           +   + + YNI K                     +++D+I    D+      G     + 
Sbjct: 445 LHRSIVDHYNIPKT-------------------FDSDDLIPPYLDQYFYSHIGHH---LK 482

Query: 416 KADYTQKMTS--------------ILNSNDYEIIPGDPTKTIEESEKYGN--LENESGQK 459
             ++ ++MT               I + +      G    T+++ + Y     +N+    
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--- 539

Query: 460 HAASDFTKAFADL-DEAEKVDPNVADSYY----QRGQIYCLFGQYEEALRNLDK 508
                + +    + D   K++ N+  S Y    +   +      +EEA + + +
Sbjct: 540 ----KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 82/553 (14%), Positives = 169/553 (30%), Gaps = 131/553 (23%)

Query: 74  HEDYLTA-IRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV-EDTSVD 131
           H D+ T   ++  ++I          L+    A V  F     K ++D+ + +     +D
Sbjct: 6   HMDFETGEHQYQYKDI----------LSVFEDAFVDNF---DCKDVQDMPKSILSKEEID 52

Query: 132 PKIKVNAHIKRAV----VHLHAASDFTKAFADLDEAEKVDPN-----VADSYYQRGQIYC 182
             I     +   +      L    +  + F  ++E  +++       +     Q   +  
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
           ++ +  + L N ++       ++V+R Q +             ++ Q+L E R       
Sbjct: 111 MYIEQRDRLYNDNQVF---AKYNVSRLQPY------------LKLRQALLELRP----AK 151

Query: 243 NVV----EAC---TLFAQVLVD---QEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAM 287
           NV+           +   V +    Q   D    + N      PE        L  ++  
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQID 210

Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT---I--EVQRGRLEEA--VKCFNKA 340
               +R +    IKL   +I  +   +   +       +   VQ  +   A  + C  K 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KI 268

Query: 341 LPLARD--------EAELSHIYSLRDAAIA-----QMKVCERY-NIKKKVSPRSQNITKN 386
           L   R          A  +HI SL   ++         +  +Y + + +  PR   +   
Sbjct: 269 LLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTT 325

Query: 387 EKLAI----KQLRENNDIIIRPADKGGKTVVMDKADYTQKMT-SILNSNDYE-------I 434
               +    + +R+             K V  DK     + + ++L   +Y        +
Sbjct: 326 NPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 435 IPGD---PTKTI---------EESEKYGN-LENESGQKHAASDFTKAFADL--DEAEKVD 479
            P     PT  +          +     N L   S  +    + T +   +  +   K++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 480 PNVA------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAE 533
              A      D Y     I   F   +     LD+    +   H+   +       TL  
Sbjct: 441 NEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFR 494

Query: 534 LMAFSDEFMIPKI 546
           ++     F+  KI
Sbjct: 495 MVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 60/445 (13%), Positives = 122/445 (27%), Gaps = 132/445 (29%)

Query: 151 SDFTKAF---ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
            D  K+     ++D        V+ +       + L  + EE ++   +   L  N+   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEE-VLRINYK-- 92

Query: 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267
                F++  +     +    Q     R +++    +     +FA+  V           
Sbjct: 93  -----FLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---------- 132

Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
                R+ P      + +A+L L+   NV     LI+  +   K+ + A +   + +VQ 
Sbjct: 133 -----RLQPYLK---LRQALLELRPAKNV-----LIDGVLGSGKTWV-ALDVCLSYKVQC 178

Query: 328 -----------GRLEEAVKCFNKALPLARD-----EAELSHIYSLRDAAIAQMKVCERYN 371
                                     L         +   H  +++   I  ++   R  
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRL 237

Query: 372 IKKKVSPRSQNITKNEKLAIKQLRENNDI-IIRPADKGGKTVVM--DKADYTQKMTSILN 428
           +K K             L +  L    +       +   K ++    K      +T  L+
Sbjct: 238 LKSKPYENC--------LLV--LLNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFLS 282

Query: 429 SNDYEIIP-GDPTKTIEESEKYGNLENESGQKHAASDFTKAFADL-DEAEKVDPNVADSY 486
           +     I     + T+   E    L      +           DL  E    +P      
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---------PQDLPREVLTTNP------ 327

Query: 487 YQRGQIYCLFGQYEEALRN---------------LDKTI-----ALNPNFHVARAQRHFV 526
               +   +     E++R+               L   I      L P  +    ++ F 
Sbjct: 328 ----RRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFD 376

Query: 527 WTSTLAELMAFSDEFMIPKITYYIL 551
                  L  F     IP I   ++
Sbjct: 377 ------RLSVFPPSAHIPTILLSLI 395

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 39/321 (12%), Positives = 86/321 (26%), Gaps = 50/321 (15%)

Query: 54  GDTNESHE-LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLR--ATVYIF 110
           G  +     L+L  + +R  +  D    +      ++  + +  K L+ +       Y +
Sbjct: 1   GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFY 59

Query: 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH------LHAASDFTKAFADLDEA- 163
                KA+E          +     +   +  A         L    +F +A        
Sbjct: 60  LHDYAKALEYHHH-----DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

Query: 164 ---EKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRHFVVHK 217
               +++     A + Y  G +Y   G+        D              A   +    
Sbjct: 115 DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY---- 170

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--- 274
                     E++L       D  +    A            +F  A     + + +   
Sbjct: 171 ----------EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219

Query: 275 ---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEV 325
                     Y +         G  + A +  +K + + +          +  +LG    
Sbjct: 220 FGDKAAERRAYSNLGNA-YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278

Query: 326 QRGRLEEAVKCFNKALPLARD 346
                E+A+    K L +A++
Sbjct: 279 LLQDYEKAIDYHLKHLAIAQE 299

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
                ++   G  + L G + +A+             H                      
Sbjct: 184 AAQGRAFGNLGNTHYLLGNFRDAV-----------IAH---------------------- 210

Query: 228 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVD------PENA 279
           EQ L   + F D  +   E           +   +F+ A EY+ +++ +          A
Sbjct: 211 EQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------FAYETLGTIEVQRGRLEEA 333
                          + ++AI    K ++I +          A  +LG      G  ++A
Sbjct: 268 QSCYSLGNT-YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

Query: 334 VKCFNKALPLARD 346
           +    K L ++R+
Sbjct: 327 MHFAEKHLEISRE 339

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 27/204 (13%), Positives = 50/204 (24%), Gaps = 54/204 (26%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
                +Y   G  Y   G++E A                                     
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYY--------------------------------- 250

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD----PENASL 281
           +++L   R   D  +   ++C          +D++ A +Y  +   I  +          
Sbjct: 251 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-------------FAYETLGTIEVQRG 328
                     A GN D+A+   EK + I +                     LG       
Sbjct: 310 CWSLGNA-YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368

Query: 329 RLEEAVKCFNKALPLARDEAELSH 352
            +       + +L   R +    H
Sbjct: 369 SIMSENTEIDSSLNGVRPKLGRRH 392

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 38/294 (12%), Positives = 80/294 (27%), Gaps = 48/294 (16%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
            L   L       +      +      V+  + D K     + +    +     D+ KA 
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKAL 63

Query: 158 A----DLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH----VA 207
                DL  A  +      A +    G    + G ++EA+    + + ++   +     A
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 208 RAQ-----------RHFVVHKMIVPGDRERV------------EQSLKEFRNFVDTHSNV 244
           RA            + F        G+                E++L       D  +  
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQ 182

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQARGNVDE 298
             A            +F  A     + + +             Y +         G  + 
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA-YIFLGEFET 241

Query: 299 AIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
           A +  +K + + +          +  +LG         E+A+    K L +A++
Sbjct: 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 51/193 (26%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
                ++   G  + L G + +A+                                    
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAH--------------------------------- 206

Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVD------PENA 279
           EQ L   + F D  +   E           +   +F+ A EY+ +++ +          A
Sbjct: 207 EQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------FAYETLGTIEVQRGRLEEA 333
                          + ++AI    K ++I +          A  +LG      G  ++A
Sbjct: 264 QSCYSLGNT-YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322

Query: 334 VKCFNKALPLARD 346
           +    K L ++R+
Sbjct: 323 MHFAEKHLEISRE 335

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 55/195 (28%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
                ++   G  + L G + +A+                                    
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAH--------------------------------- 32

Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
           EQ L   + F D  +   E           +   +F+ A EY+ +++ +      L    
Sbjct: 33  EQRLLIAKEFGDKAA---ERIAYSNLGNAYIFLGEFETASEYYKKTLLL---ARQLKDRA 86

Query: 286 AM--------LMLQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQRGRLE 331
                            + ++AI    K ++I     D+     A  +LG      G  +
Sbjct: 87  VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146

Query: 332 EAVKCFNKALPLARD 346
           +A+    K L ++R+
Sbjct: 147 QAMHFAEKHLEISRE 161

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 27/225 (12%)

Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
            HI +A  +L   + F K   D D A       A  Y +    +    Q E+A     + 
Sbjct: 12  EHIAKAEKYLK--TSFMKWKPDYDSA-------ASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 198 IALNPN----FHVARA--QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
              + N    FH A+A  Q   ++  +    +  +  +          T      A    
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122

Query: 252 AQVLVDQEDFDGAEEYFNRSIRV-----DPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
            +++ +  D   A   + ++  V         A+  + +A  +L  +   DEA   ++K 
Sbjct: 123 GKLM-EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181

Query: 307 ISID------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
            S+        +C         +++ R     A KC  ++  +  
Sbjct: 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG 226

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 24/241 (9%)

Query: 292 ARGNVDEAIKLIEKAISIDKSCMF-----------AYETLGTIEVQRGRLEEAVKCFNKA 340
           A   + EA + I KA    K+               Y           +LE+A   + + 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 341 LPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEK-LAIKQLRENND 399
                      +  SL  AA A     +   + K +    + +   EK   +       D
Sbjct: 63  AEAHA------NNRSLFHAAKAFE---QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113

Query: 400 IIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459
                 D+ GK  +M+  D ++ +     +           +  E   K   L     + 
Sbjct: 114 TAAMALDRAGK--LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171

Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
             A+   +    + +  +  P        +  +      Y  A + + ++ ++ P F  +
Sbjct: 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGS 230

Query: 520 R 520
            
Sbjct: 231 E 231

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
           Q  +  A   +++ I   P+N   Y ++AM  + L   G   +AI++ ++ +    +   
Sbjct: 17  QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTSTAEH 73

Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALP 342
                  ++ +    + AV      + 
Sbjct: 74  VAIRSK-LQYRLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 443 IEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 502
           + + EK     N   ++     + +A    D+     P     Y  +       G+Y +A
Sbjct: 1   MSQFEKQKEQGNSLFKQG---LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA 57

Query: 503 LRNLDKTIALNPNFHVA 519
           ++   + +         
Sbjct: 58  IQMCQQGLRYTSTAEHV 74

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
            + +A    D+     P     Y  +       G+Y +A++   + +         
Sbjct: 19  LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 258 QEDFDGAEEYFNRSIRVDP---ENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
             D+ GA   + +++ +D    + A L+ +RA   L L    + D+A     KAI  D  
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEASKAIEKDGG 97

Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
            + A         + GRL++AV    + +
Sbjct: 98  DVKALYRRSQALEKLGRLDQAVLDLQRCV 126

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNA--HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
           T+A+           +D   +  A  H  RA  HL    D+ KA  +  +A + D     
Sbjct: 52  TQALG----------LDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVK 100

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
           + Y+R Q     G+ ++A+ +L + ++L P 
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 70  RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS 129
             F+  DY  A+   T+ +   ++   +A+    RA  ++      KA  + ++ +E   
Sbjct: 37  ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--- 93

Query: 130 VDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
            D   +K  A  +R+           +A  DL     ++P    
Sbjct: 94  KDGGDVK--ALYRRSQAL-EKLGRLDQAVLDLQRCVSLEPKNKV 134

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           D+ KA  +  +A + D     + Y+R Q     G+ ++A+ +L + ++L P 
Sbjct: 80  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADS-YYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
           L    D   A   L+E  + +P   D  YY  G  Y   G +++AL N    I LNP+  
Sbjct: 10  LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69

Query: 206 VARAQR 211
             +A++
Sbjct: 70  ALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 464 DFTKAFADLDEAEKVDPNVADS-YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
           D   A   L+E  + +P   D  YY  G  Y   G +++AL N    I LNP+    +A+
Sbjct: 15  DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74

Query: 523 R 523
           +
Sbjct: 75  K 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 290 LQARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
           L  +G+++ A++ +E+ +  +      AY  +G    + G  ++A+  +  A+ L  D  
Sbjct: 10  LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69

Query: 349 EL 350
            L
Sbjct: 70  AL 71

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
            + L++Q D + A +     ++ +P      Y        +  G+  +A+   + AI ++
Sbjct: 7   IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMG-NAYRKLGDWQKALNNYQSAIELN 65

Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
                           R  + + +  +NK +
Sbjct: 66  PDSPALQA--------RKMVMDILNFYNKDM 88

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188
           ++DP     A         +   D+ +A     +A ++DPN A+++Y  G  Y   G Y+
Sbjct: 2   AMDPGNSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

Query: 189 EALRNLDKTIALNPNFHVA 207
           EA+    K + L+PN   A
Sbjct: 61  EAIEYYQKALELDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
           + AE ++N                       +G+ DEAI+  +KA+ +D +   A+  LG
Sbjct: 7   NSAEAWYNLGN----------------AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 50

Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAE 349
               ++G  +EA++ + KAL L  + AE
Sbjct: 51  NAYYKQGDYDEAIEYYQKALELDPNNAE 78

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           D+ +A     +A ++DPN A+++Y  G  Y   G Y+EA+    K + L+PN   A
Sbjct: 24  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
           N  +   N+             Q D+D A EY+ +++ +DP NA  + +        +G+
Sbjct: 7   NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58

Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTI 323
            DEAI+  +KA+ +D +   A + LG  
Sbjct: 59  YDEAIEYYQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
            N A+++Y  G  Y   G Y+EA+    K + L+PN   A
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 12/208 (5%)

Query: 97  KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA 156
           +A     +A  Y        AI+  +Q +E    +     N    R++ +L     +  A
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGN----RSLAYLRT-ECYGYA 59

Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV-- 214
             D   A ++D      YY+R       G++  ALR+ +  + + P+   A+ +      
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119

Query: 215 -VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV---LVDQEDFDGAEEYFNR 270
            V +          ++  +   + +D  S  +E      ++    V         +++  
Sbjct: 120 IVKQKAFE-RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD 178

Query: 271 SIRVDPENASLYVHRAMLMLQARGNVDE 298
             ++  + A   + +   +L     + E
Sbjct: 179 QKKLHRKCAYQILVQVKEVLSKLSTLVE 206

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
            +  A  D   A ++D      YY+R       G++  ALR+ +  + + P+   A+ +
Sbjct: 55  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 113

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/161 (15%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
            +D++ A ++++++I ++P NA  Y +R++  L+       A+    +AI +DK  +  Y
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGY 77

Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
                  +  G+   A++ +   + +   + +          A  + + C +  +K+K  
Sbjct: 78  YRRAASNMALGKFRAALRDYETVVKVKPHDKD----------AKMKYQECNKI-VKQKAF 126

Query: 378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKAD 418
            R+    ++++  +  L  + + +    +  G  +   K  
Sbjct: 127 ERAIAGDEHKRSVVDSL--DIESMTIEDEYSGPKLEDGKVT 165

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 49/194 (25%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P+VA        +Y    +Y+EA   L+  +A+                       RE+ 
Sbjct: 40  PDVATMLNILALVYRDQNKYKEAAHLLNDALAI-----------------------REKT 76

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PENA 279
                        H  V       A +   +  +  AE    R+  IR        P+ A
Sbjct: 77  ---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLE 331
               + A+L  Q +G  +E      +A+ I  + +             L +  +++G+ +
Sbjct: 128 KQLNNLALL-CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186

Query: 332 EAVKCFNKALPLAR 345
           +A   + + L  A 
Sbjct: 187 DAETLYKEILTRAH 200

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 50/191 (26%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P VA +      +Y   G+Y+EA     + + +                       RE+V
Sbjct: 82  PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----------------------REKV 118

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPENA 279
                        H +V +     A +  +Q   +  E Y+ R+  I        DP  A
Sbjct: 119 ---------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---------AYETLGTIEVQRGRL 330
               + A      +G   +A  L ++ ++      F          +      E  + + 
Sbjct: 170 KTKNNLASC-YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228

Query: 331 EEAVKCFNKAL 341
            ++        
Sbjct: 229 RDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 52/191 (27%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P+VA        +    G+ EE      + + +                           
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-----------------------YATR 160

Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSI---------RVDP 276
                          NV  A T    A   + Q  +  AE  +   +          V+ 
Sbjct: 161 ---------LGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGRL 330
           +N  +++H      +++    ++    E             +      +LG +  ++G+L
Sbjct: 210 DNKPIWMHAEER-EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268

Query: 331 EEAVKCFNKAL 341
           E A    + A 
Sbjct: 269 EAAHTLEDCAS 279

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 17/151 (11%), Positives = 35/151 (23%), Gaps = 42/151 (27%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
           DPNVA +       Y   G+Y++A                                    
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLY-------------------------------- 192

Query: 227 VEQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PEN 278
            ++ L           + +         +    ++    +  Y              P  
Sbjct: 193 -KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309
            +       L  + +G ++ A  L + A   
Sbjct: 252 NTTLRSLGAL-YRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 228 EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 278
           +Q+L++        H +V     + A V  DQ  +  A    N +  IR        P  
Sbjct: 25  KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRGRL 330
           A+   + A+L    RG   EA  L ++A+ I +                L  +   +G+ 
Sbjct: 85  AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143

Query: 331 EEAVKCFNKAL 341
           EE    + +AL
Sbjct: 144 EEVEYYYRRAL 154

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 49/191 (25%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
            P    + +     Y   G+YE A+    + +                        D E+
Sbjct: 23  IPARLRTLHNLVIQYASQGRYEVAVPLCKQALE-----------------------DLEK 59

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPEN 278
                         H +V     + A V  DQ  +  A    N +  IR        P  
Sbjct: 60  T---------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRGRL 330
           A+   + A+L    RG   EA  L ++A+ I +                L  +   +G+ 
Sbjct: 111 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169

Query: 331 EEAVKCFNKAL 341
           EE    + +AL
Sbjct: 170 EEVEYYYQRAL 180

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 48/189 (25%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P+VA        +    G+YEE      + + +                        +  
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI-----------------------YQTK 186

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI---------RVDPEN 278
                          NV +     A   + Q  F  AE  +   +          VD EN
Sbjct: 187 ---------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGRLEE 332
             +++H      + +G   +     E             +     + LG +  ++G+ E 
Sbjct: 238 KPIWMHAEER-EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296

Query: 333 AVKCFNKAL 341
           A      A+
Sbjct: 297 AETLEEAAM 305

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 49/194 (25%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P+VA        +Y    +Y++A   L+  +A+                       RE+ 
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAI-----------------------REKT 102

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PENA 279
                        H  V       A +   +  +  AE    R+  IR        P+ A
Sbjct: 103 ---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLE 331
               + A+L  Q +G  +E     ++A+ I ++ +             L +  +++G+ +
Sbjct: 154 KQLNNLALL-CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212

Query: 332 EAVKCFNKALPLAR 345
           +A   + + L  A 
Sbjct: 213 QAETLYKEILTRAH 226

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 50/191 (26%)

Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
           P VA +      +Y   G+Y+EA     + + +                       RE+V
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----------------------REKV 144

Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPENA 279
                        H +V +     A +  +Q  ++  E Y+ R+  I        DP  A
Sbjct: 145 ---------LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195

Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---------AYETLGTIEVQRGRL 330
               + A      +G   +A  L ++ ++      F          +      E  +G+ 
Sbjct: 196 KTKNNLASC-YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254

Query: 331 EEAVKCFNKAL 341
           ++         
Sbjct: 255 KDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 17/153 (11%), Positives = 33/153 (21%), Gaps = 42/153 (27%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
           DPNVA +       Y   G++++A                                    
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLY-------------------------------- 218

Query: 227 VEQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PEN 278
            ++ L                       +    +        +              P  
Sbjct: 219 -KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
            +   +   L  + +G  + A  L E A+   K
Sbjct: 278 TTTLKNLGAL-YRRQGKFEAAETLEEAAMRSRK 309

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 260 DFDGAEEYFNRSIRV---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
               A  Y+ ++I       + A  Y+       +  G   +A  ++   +    +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
                 +    GR E+ V+   K +    D+  + 
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
             ++A+ Y   G  +   G+Y +A   L   +   PN    R   
Sbjct: 23  GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
             ++A+ Y   G  +   G+Y +A   L   +   PN    R   
Sbjct: 23  GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
                   ++  AE      ++  P + +L V  AM +L   G  ++ ++L+ K I+  
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM-VLYNLGRYEQGVELLLKIIAET 91

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 294 GNVDEAIKLIEKAISI---DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
           G   +A+   EKAI+     K     Y  LG+     G   +A       +    +   L
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 351 SHIYSL 356
              Y++
Sbjct: 64  RVFYAM 69

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A+    + +        +    ++           ++ KA A L    K  PN      
Sbjct: 8   QAVPYYEKAIASGLQGKDL-AECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQALRV 65

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPN 203
               +    G+YE+ +  L K IA   +
Sbjct: 66  FYAMVLYNLGRYEQGVELLLKIIAETSD 93

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           ++ KA A L    K  PN          +    G+YE+ +  L K IA   +
Sbjct: 42  EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA------SDFTKAFADLDEAEKVDP 168
             A+  L  L+          V    K   ++ + +       D  +A     E  K + 
Sbjct: 35  RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94

Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
               + ++R +      + +EA  +L   +  +P      A+   +V +       E+  
Sbjct: 95  TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR----AEKKA 150

Query: 229 QSLKEFRNF 237
            S   +   
Sbjct: 151 DSRVTYSKM 159

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           D  +A     E  K +     + ++R +      + +EA  +L   +  +P 
Sbjct: 78  DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 116 KAIEDLTQLVEDTSVDPK----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA 171
           K +  L      +  + K      + A +  A+ +L    ++TKA    D+A  +D    
Sbjct: 293 KIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKALGLDSANE 351

Query: 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
              Y+RG+   L  ++E A  + +K + +NP    AR Q
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 23/188 (12%)

Query: 358 DAAIAQMKVCERYNIK-------KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK 410
           D A+ +M+  E+  +         +       I  N +L  +   ++ +      +   K
Sbjct: 203 DKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTK 262

Query: 411 TVVMDKADYTQKMTSILNSNDYE-----------IIPGDPTKTIEESEKYGNLENESGQK 459
             +   A   +K T       Y             +  +   + +ES+   +    +   
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322

Query: 460 HAA-----SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
            A       ++TKA    D+A  +D       Y+RG+   L  ++E A  + +K + +NP
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382

Query: 515 NFHVARAQ 522
               AR Q
Sbjct: 383 QNKAARLQ 390

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 22/238 (9%)

Query: 119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG 178
             L       +           +  ++      +        +E    +      +  R 
Sbjct: 51  RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110

Query: 179 QIYCLFGQ-------YEEALRNLDKTIALNP-NFHVARAQRHFVVHKMIVPGDRERVEQS 230
            I     +              L+  ++ +P N H   + R ++V    +  D + +   
Sbjct: 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH-VWSYRKWLVDTFDLHNDAKELSFV 169

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE------EYFNRSIRVDPENASLYVH 284
            K     +  +S    A +    +L  ++             Y    I   P+N S + +
Sbjct: 170 DKVIDTDLKNNS----AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225

Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKS---CMFAYETLGTIEVQRGRLEEAVKCFNK 339
              +  +   ++ +  +   + + ++K      FA ETL  I  Q+ +  E+   ++ 
Sbjct: 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 88  IESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147
           +E+     ++ L   ++A VY    + T  I+ +    +    D  +   A +   V   
Sbjct: 125 LEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAA 182

Query: 148 HAASDFTKAFADLDEAEK---VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
           + A  FT+A   L EA      +       +         G    A+  L+     +P  
Sbjct: 183 NLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241

Query: 205 HVARA 209
            VA A
Sbjct: 242 KVAAA 246

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 26/224 (11%)

Query: 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
               ++     E    D +  D++   G+I C     +     L +      NF   +  
Sbjct: 20  MSEARSLDLFTEITNYDESACDAWI--GRIRC----GDTDRVTLFRAWYSRRNFG--QLS 71

Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270
               +                  + +     ++ +     FA     Q ++  A E    
Sbjct: 72  GSVQIS----MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA 127

Query: 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF--AYETLGTIEVQRG 328
           +     E+   ++ +A++   A     + I  ++ A       +   A    G       
Sbjct: 128 APVAGSEHLVAWM-KAVVYGAAE-RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185

Query: 329 RLEEAVKCFNKAL-----PLARDEAELSHIYSLR-----DAAIA 362
              EA +   +A                   + R      AA+A
Sbjct: 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 115 TKAIEDLTQLVEDTSVDPK----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
            K +  L      ++ + +    +++ +H+  A+ HL     F+ A    ++A ++D N 
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNN 229

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
                +RG+ +     +E A  +  K + L PN   A+ Q      ++     R ++ + 
Sbjct: 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI-----RRQLARE 284

Query: 231 LKEFRNF 237
            K + N 
Sbjct: 285 KKLYANM 291

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
            F+ A    ++A ++D N      +RG+ +     +E A  +  K + L PN   A+ Q
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 15/144 (10%), Positives = 44/144 (30%), Gaps = 12/144 (8%)

Query: 94  NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153
              +A+ +   A  Y+      +       +         +K   H+  A   +     +
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA------VKNPCHLNIAACLIKL-KRY 246

Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
            +A    +     +     + ++RG+     GQ + A  +  K     P+    R +   
Sbjct: 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306

Query: 214 VVHKMIVPGDRERVEQSLKEFRNF 237
           +  +      +   ++  + ++  
Sbjct: 307 LAEQE-----KALYQKQKEMYKGI 325

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
            + +A    +     +     + ++RG+     GQ + A  +  K     P+    R +
Sbjct: 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRE 303

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 115 TKAIEDLTQLVEDTSVDPKIKVNA-----HIKRAVVHLHAASDFTKAFADLDEAEKVDPN 169
            +A++      E        K        ++  A  +     D+ KA     +  K+D N
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDKN 120

Query: 170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ 229
              + Y+ G     FG  EEA  NL K  +LNPN    R      V+K+     +E  ++
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL-----KEARKK 175

Query: 230 SLKEFRNF 237
               F   
Sbjct: 176 DKLTFGGM 183

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 17/133 (12%)

Query: 258 QEDFDGAEEYFNRSIRVDPEN----------------ASLYVHRAMLMLQARGNVDEAIK 301
           + + + A   +  ++                       S  ++ A    +   +  +AI 
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAID 109

Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
              K + IDK+ + A   LG   +  G LEEA +   KA  L  +  ++ + Y L    +
Sbjct: 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169

Query: 362 AQMKVCERYNIKK 374
            + +  ++     
Sbjct: 170 KEARKKDKLTFGG 182

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
           +  +     +A   L EA K  P  A       ++ C+ G +E A   L ++I L P   
Sbjct: 6   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-- 63

Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
                      + +V   + R + +       V   +  +    +   + +  +D++   
Sbjct: 64  ---YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120

Query: 266 EYFNRSIRVDPENA 279
           E   +   +  E  
Sbjct: 121 ELALQIEELRQEKG 134

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           +     +A   L EA K  P  A       ++ C+ G +E A   L ++I L P +    
Sbjct: 9   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68

Query: 521 AQ 522
           +Q
Sbjct: 69  SQ 70

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 56  TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQST 115
           +N S +  LL +     +  ++  A+    + +     +              + T Q  
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVI-QTLSDELQSRGDVKLAKADC--LLETKQFE 57

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
            A E L  +  +   +     +     A + LH  +  +     L++    +P+  +   
Sbjct: 58  LAQELLATIPLEYQDN-----SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214
           +    Y   G+ EEAL  L   + +N        ++ F+
Sbjct: 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
            +    Q+L   +   D   +  +     A  L++ + F+ A+E    +I ++ ++ S  
Sbjct: 18  QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA-TIPLEYQDNSYK 76

Query: 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342
              A L L  +      +K +E+ ++ +         L     Q GR EEA++     L 
Sbjct: 77  SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136

Query: 343 LARDEAE 349
           +     +
Sbjct: 137 VNLGAQD 143

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
              L+ Q +   A                + + +A  +L+     + A +L+       +
Sbjct: 13  VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ 71

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
              +          Q+      +K   + L    D  EL+   +++   + +
Sbjct: 72  DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 54  GDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSNHTKALARLLRATVYIF 110
           GD++     D     K   +       ++     I +T   S N   A+ +  +   Y+ 
Sbjct: 199 GDSHPDFPEDADVDLKDVDKILLISEDLK----NIGNTFFKSQNWEMAIKKYTKVLRYVE 254

Query: 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
            S++     D  +L         + ++  +      L   SD+  A     EA ++DP+ 
Sbjct: 255 GSRAAAEDADGAKLQ-------PVALSCVLNIGACKLKM-SDWQGAVDSCLEALEIDPSN 306

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
             + Y+R Q +    +Y++AL +L K   + P 
Sbjct: 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
           SD+  A     EA ++DP+   + Y+R Q +    +Y++AL +L K   + P 
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 32/232 (13%), Positives = 60/232 (25%), Gaps = 13/232 (5%)

Query: 119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF-TKAFADLDEAEKVDPNVADSYYQR 177
           +      ED ++  K +V    ++ ++ L    D   +A   L+++ K+     D    +
Sbjct: 19  KSNPLRTEDQTLITK-RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77

Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237
                    YE A+  L K    N   + A A               E+V          
Sbjct: 78  LFSDEAANIYERAISTLLKK---NMLLYFAYA------DYEESRMKYEKVHSIYNRLLAI 128

Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
            D           + +     E        F ++         +YV  A++      +  
Sbjct: 129 EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186

Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
            A K+ E  +                             F + L       E
Sbjct: 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 29/235 (12%), Positives = 71/235 (30%), Gaps = 22/235 (9%)

Query: 63  DLLSKAKRAF-EHEDYLTAIRHCTEEIE---STSSNHTKALARLLRATVYIFTSQSTKAI 118
           DL  +A   +   ++   A     +  +      +        +     +     S  A+
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 119 EDLTQLVE--DTSVDPKIKVNAHIKRAVVHLHAASDFTKAF------ADLDEAEKVDPNV 170
           + L   ++        +   N   +   +  +   D+ KA        +    ++     
Sbjct: 98  DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV----PGDRER 226
              + +   +  L GQY EA     K I  +    +++        K  +      D   
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217

Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVL-----VDQEDFDGAEEYFNRSIRVDP 276
             ++L+E ++     ++  E       ++      D E      + F+  +R+D 
Sbjct: 218 AARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)

Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMF-----------AYETLGTIEVQRGRLEEAVKCF 337
           +      +  A K    +    K                     TI   R  L  A   F
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 338 NKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN 397
            KA    +         +  +A    ++  + +  K   +  +   +    + I   R  
Sbjct: 61  LKAADYQK------KAGNEDEAGNTYVEAYKCF--KSGGNSVNAVDSLENAIQIFTHRGQ 112

Query: 398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG 457
                    + G+ +  D  DY + +     + ++         + +   K  +L+   G
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172

Query: 458 Q-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
           Q   A+  ++K             ++ D + ++G           A R L +  + +PNF
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232

Query: 517 HVAR 520
             +R
Sbjct: 233 ADSR 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	551
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.98
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.79
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.66
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.66
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.62
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.54
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.47
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.44
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.36
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.86
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.73
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.73
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.65
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.62
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.59
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.55
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.41
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.34
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.2
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.01
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.96
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.47
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.44
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.42
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.4
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.34
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.0
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.53
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.3
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.26
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.22
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.16
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.12
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.97
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.82
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.63
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.53
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.16
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.09
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.66
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.51
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.1
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.78
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.05
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.81
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.51
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	86.76
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	82.54
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.32

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.8e-44  Score=344.87  Aligned_cols=385  Identities=16%  Similarity=0.202  Sum_probs=332.7

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV  145 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~  145 (551)
                      ..|..++..|++++|+..+.++++.+|+   ++.++..+|.++...|++++|+..++++++.+|.+    ..++..+|.+
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~   76 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNV   76 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHH
Confidence            4688899999999999999999999998   88999999999999999999999999999999988    4467779999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE  225 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (551)
                      +...| ++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+....+..++.++...      |
T Consensus        77 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g  149 (388)
T 1w3b_A           77 YKERG-QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL------G  149 (388)
T ss_dssp             HHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT------S
T ss_pred             HHHCC-CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------c
Confidence            99999 9999999999999999999999999999999999999999999999999999999999999777766      9


Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      ++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .|++++|+..+++
T Consensus       150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~  228 (388)
T 1w3b_A          150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE-ARIFDRAVAAYLR  228 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999776 9999999999999


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhH
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITK  385 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (551)
                      ++..+|+++.++..+|.++...|++++|+..|+++++..|+++..+..++......                       +
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------------------g  285 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK-----------------------G  285 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH-----------------------S
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------------------C
Confidence            99999999999999999999999999999999999999999887655444331110                       1


Q ss_pred             HHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcCh
Q psy12713        386 NEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDF  465 (551)
Q Consensus       386 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (551)
                      ....++..+.+...                                  ..|.+..          .+...+..+...|++
T Consensus       286 ~~~~A~~~~~~al~----------------------------------~~p~~~~----------~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          286 SVAEAEDCYNTALR----------------------------------LCPTHAD----------SLNNLANIKREQGNI  321 (388)
T ss_dssp             CHHHHHHHHHHHHH----------------------------------HCTTCHH----------HHHHHHHHHHTTTCH
T ss_pred             CHHHHHHHHHHHHh----------------------------------hCcccHH----------HHHHHHHHHHHcCCH
Confidence            11122222221100                                  0111111          112223336778999


Q ss_pred             hHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713        466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA  532 (551)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  532 (551)
                      ++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|+
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999999999999987653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6e-39  Score=308.63  Aligned_cols=356  Identities=22%  Similarity=0.250  Sum_probs=312.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ++..++..|..++..|++++|...++.++..+|.   ++.++..+|.++...|++++|+..|++++..+|++    ..++
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~  104 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGY  104 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHH
Confidence            4678889999999999999999999999999998   99999999999999999999999999999999988    4466


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++...| ++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++... 
T Consensus       105 ~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-  182 (388)
T 1w3b_A          105 INLAAALVAAG-DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-  182 (388)
T ss_dssp             HHHHHHHHHHS-CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence            77999999999 9999999999999999999999999999999999999999999999999999999999999777776 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                           |++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|
T Consensus       183 -----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A  256 (388)
T 1w3b_A          183 -----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLA  256 (388)
T ss_dssp             -----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             -----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cCCHHHH
Confidence                 9999999999999999999999999999999999999999999999999999999999999999877 9999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR  379 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (551)
                      +..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..++....                    
T Consensus       257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------------------  316 (388)
T 1w3b_A          257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR--------------------  316 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH--------------------
Confidence            999999999999999999999999999999999999999999999998876654433210                    


Q ss_pred             hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch-hhhch
Q psy12713        380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE-NESGQ  458 (551)
Q Consensus       380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  458 (551)
                         ..+....++..+.+.                                  +...|.           ....+ ..+..
T Consensus       317 ---~~g~~~~A~~~~~~a----------------------------------l~~~p~-----------~~~~~~~l~~~  348 (388)
T 1w3b_A          317 ---EQGNIEEAVRLYRKA----------------------------------LEVFPE-----------FAAAHSNLASV  348 (388)
T ss_dssp             ---TTTCHHHHHHHHHHH----------------------------------TTSCTT-----------CHHHHHHHHHH
T ss_pred             ---HcCCHHHHHHHHHHH----------------------------------HhcCCC-----------cHHHHHHHHHH
Confidence               011122222222221                                  011111           11122 23333


Q ss_pred             hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcC
Q psy12713        459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  498 (551)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  498 (551)
                      +...|++++|+..|+++++.+|+++.+++.+|.++..+|+
T Consensus       349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            7778999999999999999999999999999999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=309.74  Aligned_cols=392  Identities=17%  Similarity=0.205  Sum_probs=329.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++.+|..++..|+|++|+..|++++..+|    ++.++..+|.++...|++++|+..++++++.+|++    ..++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~   76 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHH
Confidence            678899999999999999999999999999998    47899999999999999999999999999999988    4567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------------------------------------------
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV-------------------------------------------------  170 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------------------------------  170 (551)
                      ..+|.++...| ++++|+..|++++...|.+                                                 
T Consensus        77 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (514)
T 2gw1_A           77 LRRASANEGLG-KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ  155 (514)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHHHh-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence            77999999999 9999999999999887633                                                 


Q ss_pred             ------------------------------hhHHHHHHHHHHH---hCCHHHHHHHHHHHHh-----c--CC-------C
Q psy12713        171 ------------------------------ADSYYQRGQIYCL---FGQYEEALRNLDKTIA-----L--NP-------N  203 (551)
Q Consensus       171 ------------------------------~~~~~~la~~~~~---~~~~~~A~~~~~~~l~-----~--~~-------~  203 (551)
                                                    +.++..+|.++..   .|++++|+..+++++.     +  .|       .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (514)
T 2gw1_A          156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK  235 (514)
T ss_dssp             -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred             cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence                                          5667778887776   8999999999999999     6  44       4


Q ss_pred             CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV  283 (551)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (551)
                      ...++..+|.++...      |++++|+..+++++...|. ..++..+|.++...|++++|+..+++++..+|.++.++.
T Consensus       236 ~~~~~~~~~~~~~~~------~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  308 (514)
T 2gw1_A          236 LAISLEHTGIFKFLK------NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY  308 (514)
T ss_dssp             HHHHHHHHHHHHHHS------SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH
T ss_pred             HHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH
Confidence            456777888777777      9999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHH
Q psy12713        284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ  363 (551)
Q Consensus       284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  363 (551)
                      .+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++..++..++.....   
T Consensus       309 ~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---  384 (514)
T 2gw1_A          309 HRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD---  384 (514)
T ss_dssp             HHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH---
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---
Confidence            99999887 99999999999999999999999999999999999999999999999999999887765544433111   


Q ss_pred             HHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713        364 MKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI  443 (551)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (551)
                                          .+....++..+.+....                                  .|...... 
T Consensus       385 --------------------~~~~~~A~~~~~~a~~~----------------------------------~~~~~~~~-  409 (514)
T 2gw1_A          385 --------------------KNDFDKALKQYDLAIEL----------------------------------ENKLDGIY-  409 (514)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHH----------------------------------HHTSSSCS-
T ss_pred             --------------------CCCHHHHHHHHHHHHHh----------------------------------hhccchHH-
Confidence                                01112222222211100                                  00000000 


Q ss_pred             hhhhhhccchhhhchhhh---hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713        444 EESEKYGNLENESGQKHA---ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  520 (551)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  520 (551)
                         .........+..+..   .|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++
T Consensus       410 ---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          410 ---VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             ---SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             ---HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence               000012233334667   79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12713        521 AQRHFVWTS  529 (551)
Q Consensus       521 ~~l~~~~~~  529 (551)
                      ..+......
T Consensus       487 ~~~~~~~~~  495 (514)
T 2gw1_A          487 QAITFAEAA  495 (514)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888666553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.3e-36  Score=296.83  Aligned_cols=344  Identities=14%  Similarity=0.151  Sum_probs=282.0

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHH
Q psy12713         77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA  156 (551)
Q Consensus        77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A  156 (551)
                      ...+...+.+++..+|.   ++.+++.+|.++...|++++|+..|++++...|++    ..++..+|.++...| ++++|
T Consensus         8 ~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g-~~~~A   79 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMG-KSKAA   79 (450)
T ss_dssp             ---------------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHH
T ss_pred             cccccccccccccccHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCC-CHHHH
Confidence            34455666777777777   78888888888888888888888888888887776    445666888888888 88888


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhhcC
Q psy12713        157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH---VARAQR------------HFVVHKMIVP  221 (551)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~------------~~~~~~~~~~  221 (551)
                      +..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.   ..+..+            +.++...   
T Consensus        80 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---  156 (450)
T 2y4t_A           80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS---  156 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            8888888888888888888888888888888888888888888888777   665544            4335554   


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK  301 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  301 (551)
                         |++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus       157 ---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  232 (450)
T 2y4t_A          157 ---GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LGDHELSLS  232 (450)
T ss_dssp             ---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence               9999999999999999999999999999999999999999999999999999999999999999777 999999999


Q ss_pred             HHHHHHhcCcCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713        302 LIEKAISIDKSCMFAYETL------------GTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER  369 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (551)
                      .+++++...|++...+..+            |.++...|++++|+..|++++...|+++......               
T Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~---------------  297 (450)
T 2y4t_A          233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS---------------  297 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH---------------
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH---------------
Confidence            9999999999998887766            9999999999999999999999999876532110               


Q ss_pred             hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713        370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY  449 (551)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (551)
                                                                                                      
T Consensus       298 --------------------------------------------------------------------------------  297 (450)
T 2y4t_A          298 --------------------------------------------------------------------------------  297 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                        ....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.+...
T Consensus       298 --~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          298 --KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             --HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence              011122255568999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             hhh
Q psy12713        530 TLA  532 (551)
Q Consensus       530 ~~~  532 (551)
                      .++
T Consensus       376 ~~~  378 (450)
T 2y4t_A          376 LKQ  378 (450)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2e-36  Score=297.21  Aligned_cols=363  Identities=15%  Similarity=0.160  Sum_probs=323.3

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      .+++..++..|..++..|++++|+..|++++..+|.   ++.++..+|.++...|++++|+..|+++++.+|++    ..
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~   95 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TA   95 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HH
Confidence            347899999999999999999999999999999998   89999999999999999999999999999999988    45


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hHHHHH------------HHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DSYYQR------------GQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      ++..+|.++...| ++++|+..|++++..+|++.   .++..+            |.++...|++++|+..+++++...|
T Consensus        96 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A           96 ARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            6777999999999 99999999999999999988   776655            6679999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        203 NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY  282 (551)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  282 (551)
                      .+..++..++.++...      |++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++...+
T Consensus       175 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  248 (450)
T 2y4t_A          175 WDAELRELRAECFIKE------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF  248 (450)
T ss_dssp             TCHHHHHHHHHHHHHT------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CChHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence            9999999999888888      9999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHH------------HHHHHHhcCCHHHHHHHHHHHHhcCcCCHH----HHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        283 VHR------------AMLMLQARGNVDEAIKLIEKAISIDKSCMF----AYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       283 ~~l------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      ..+            |.++.. .|++++|+.+|+++++..|+++.    .+..+|.++...|++++|+..+++++...|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          249 AHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            666            888777 99999999999999999999854    7889999999999999999999999999998


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhh
Q psy12713        347 EAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI  426 (551)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (551)
                      +..++..++.                                                                      
T Consensus       328 ~~~~~~~l~~----------------------------------------------------------------------  337 (450)
T 2y4t_A          328 NVNALKDRAE----------------------------------------------------------------------  337 (450)
T ss_dssp             CHHHHHHHHH----------------------------------------------------------------------
T ss_pred             cHHHHHHHHH----------------------------------------------------------------------
Confidence            7765433321                                                                      


Q ss_pred             hccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhh------------HHH
Q psy12713        427 LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ------------IYC  494 (551)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~------------~~~  494 (551)
                                                     .+...|++++|+..|+++++.+|+++.++..+|.            .|.
T Consensus       338 -------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~  386 (450)
T 2y4t_A          338 -------------------------------AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK  386 (450)
T ss_dssp             -------------------------------HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred             -------------------------------HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH
Confidence                                           2445689999999999999999999999999994            455


Q ss_pred             Hhc-----CHHHHHHHHHH-HhhcCCchHH----------HHHHHHHHHHHhhhhhhh
Q psy12713        495 LFG-----QYEEALRNLDK-TIALNPNFHV----------ARAQRHFVWTSTLAELMA  536 (551)
Q Consensus       495 ~~g-----~~~~A~~~~~~-al~~~p~~~~----------a~~~l~~~~~~~~~~~~a  536 (551)
                      .+|     +.+++...|++ +++.+|++..          .+..++.+|..++|...+
T Consensus       387 ~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             GSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            556     66788999997 8999988632          455666667766665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=7e-36  Score=284.07  Aligned_cols=340  Identities=14%  Similarity=0.155  Sum_probs=266.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++.++..|..++..|++++|+..|+++++.+|.   ++.++..+|.++...|++++|+..++++++..|+++    .++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~   74 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AAR   74 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHH
Confidence            4566667777777777777777777777777666   666777777777777777777777777776666653    344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDP---NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      ..+|.++...| ++++|+..++++++.+|   +++.++..++.++...                      .+..++.++.
T Consensus        75 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~  131 (359)
T 3ieg_A           75 LQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ----------------------RLRSQALDAF  131 (359)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH----------------------HHHHHHHHHH
Confidence            55677777777 77777777777777666   6666666665443211                      1233455555


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  296 (551)
                      ..      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.. .|++
T Consensus       132 ~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~  204 (359)
T 3ieg_A          132 DG------ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LGDH  204 (359)
T ss_dssp             HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-HTCH
T ss_pred             Hc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            55      8999999999999999999999999999999999999999999999999999999999999999777 8999


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHH
Q psy12713        297 DEAIKLIEKAISIDKSCMFAYE------------TLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM  364 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  364 (551)
                      ++|+..++++++..|+++.++.            .+|.++...|++++|+..+++++...|+++......          
T Consensus       205 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------  274 (359)
T 3ieg_A          205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS----------  274 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH----------
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH----------
Confidence            9999999999999998877654            448889999999999999999999999876532111          


Q ss_pred             HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhh
Q psy12713        365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE  444 (551)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (551)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (359)
T 3ieg_A          275 --------------------------------------------------------------------------------  274 (359)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713        445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  524 (551)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  524 (551)
                             ....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++
T Consensus       275 -------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~  347 (359)
T 3ieg_A          275 -------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE  347 (359)
T ss_dssp             -------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             -------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence                   0111222556699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12713        525 FVWTSTLAE  533 (551)
Q Consensus       525 ~~~~~~~~~  533 (551)
                      .+....++.
T Consensus       348 ~~~~~~~~~  356 (359)
T 3ieg_A          348 KAQRLLKQS  356 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-36  Score=309.84  Aligned_cols=353  Identities=14%  Similarity=0.091  Sum_probs=320.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--------------------------------
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRAT--------------------------------  106 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~--------------------------------  106 (551)
                      .++..++..|..+...|++++|+..|+++++.+|.   ...++..++.                                
T Consensus       198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  274 (597)
T 2xpi_A          198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL  274 (597)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence            36889999999999999999999999999999998   6666665543                                


Q ss_pred             ------HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713        107 ------VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI  180 (551)
Q Consensus       107 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  180 (551)
                            .|...|++++|+..|++++.. |.+    ..++..+|.++...| ++++|+..|++++..+|++..++..++.+
T Consensus       275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  348 (597)
T 2xpi_A          275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKS----SDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLAS  348 (597)
T ss_dssp             HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHhhcC-Cch----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence                  444678999999999999887 444    456777999999999 99999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC
Q psy12713        181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED  260 (551)
Q Consensus       181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  260 (551)
                      +...|++++|+..+++++...|++...+..++.++...      |++++|+..|+++++..|.+..++..+|.++...|+
T Consensus       349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  422 (597)
T 2xpi_A          349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV------NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE  422 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999888888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        261 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      +++|+..|+++++..|++..++..++.++.. .|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++
T Consensus       423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999999999999999777 999999999999999999999999999999999999999999999999


Q ss_pred             ccccc------CH-HHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccc
Q psy12713        341 LPLAR------DE-AELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVV  413 (551)
Q Consensus       341 ~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  413 (551)
                      ++..|      ++ ..+                                                               
T Consensus       502 ~~~~~~~~~~p~~~~~~---------------------------------------------------------------  518 (597)
T 2xpi_A          502 LLLVKKTQSNEKPWAAT---------------------------------------------------------------  518 (597)
T ss_dssp             HHHHHHSCCCSGGGHHH---------------------------------------------------------------
T ss_pred             HHhhhccccchhhHHHH---------------------------------------------------------------
Confidence            88743      21 111                                                               


Q ss_pred             cCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHH
Q psy12713        414 MDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  493 (551)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  493 (551)
                                                            +...+..+...|++++|+..++++++.+|+++.++..+|.+|
T Consensus       519 --------------------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          519 --------------------------------------WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             --------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence                                                  112222366679999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      ...|++++|+..|+++++++|+++.++..++.+|.
T Consensus       561 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          561 LHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            99999999999999999999999999999998874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.3e-37  Score=311.22  Aligned_cols=393  Identities=16%  Similarity=0.175  Sum_probs=311.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++..|..++..|++++|+..|++++..+|+   ++.++..+|.++..+|++++|+..++++++.+|+++    .++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~   96 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----KAL   96 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----HHH
Confidence            5788999999999999999999999999999998   899999999999999999999999999999999984    466


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH----------------------------------------------
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADS----------------------------------------------  173 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------------------------------------  173 (551)
                      +.+|.++...| ++++|+..|+ ++..+|+....                                              
T Consensus        97 ~~la~~~~~~g-~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (537)
T 3fp2_A           97 LRRASANESLG-NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF  174 (537)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHcC-CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence            77999999999 9999999995 77666654332                                              


Q ss_pred             ----------------------HHHH--------HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCC
Q psy12713        174 ----------------------YYQR--------GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPG  222 (551)
Q Consensus       174 ----------------------~~~l--------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~  222 (551)
                                            ...+        +......|++++|+..++++++.+|++...+..++.++... ..+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence                                  1111        22223346899999999999999999977655555444333 3444


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                      ..|++++|+..+++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+..
T Consensus       255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~  332 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYKNAKED  332 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            449999999999999999999 99999999999999999999999999999999999999999999877 9999999999


Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhh
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQN  382 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (551)
                      ++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..++......                .....
T Consensus       333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~  396 (537)
T 3fp2_A          333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR----------------GDFDT  396 (537)
T ss_dssp             HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT----------------TCHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----------------CCHHH
Confidence            99999999999999999999999999999999999999999999887766554331110                11111


Q ss_pred             hhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhh
Q psy12713        383 ITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAA  462 (551)
Q Consensus       383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (551)
                      .......++...+....                                         ..    ...+.+...+..+...
T Consensus       397 A~~~~~~a~~~~~~~~~-----------------------------------------~~----~~~~~~~~~a~~~~~~  431 (537)
T 3fp2_A          397 AIKQYDIAKRLEEVQEK-----------------------------------------IH----VGIGPLIGKATILARQ  431 (537)
T ss_dssp             HHHHHHHHHHHHHHCSS-----------------------------------------CS----STTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcchh-----------------------------------------hH----HHHHHHHHHHHHHHHH
Confidence            11222222222111100                                         00    0011122233446666


Q ss_pred             ----------cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713        463 ----------SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  524 (551)
Q Consensus       463 ----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  524 (551)
                                |++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++........
T Consensus       432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  503 (537)
T 3fp2_A          432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT  503 (537)
T ss_dssp             HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred             hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence                      99999999999999999999999999999999999999999999999999999988765443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.7e-36  Score=306.48  Aligned_cols=401  Identities=16%  Similarity=0.110  Sum_probs=330.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----------
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-----------  128 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----------  128 (551)
                      +...++..|..+...|++++|+..|++++...+    ++.++..+|.+|...|++++|+..|++.....           
T Consensus       116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  191 (597)
T 2xpi_A          116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR----SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM  191 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT----CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred             CchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc----chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence            446788899999999999999999999877644    67899999999999999999999999643322           


Q ss_pred             -CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH-----------------------------
Q psy12713        129 -SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG-----------------------------  178 (551)
Q Consensus       129 -~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-----------------------------  178 (551)
                       .........++..+|.+|...| ++++|+..|+++++.+|++..++..++                             
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  270 (597)
T 2xpi_A          192 QDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF  270 (597)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred             cccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence             0011122557788999999999 999999999999999999988877664                             


Q ss_pred             ---------HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        179 ---------QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       179 ---------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                               ..|...|++++|+..|+++++. |.+...+..++.++...      |++++|+..|++++...|.+..++.
T Consensus       271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~  343 (597)
T 2xpi_A          271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR------SRFIDVLAITTKILEIDPYNLDVYP  343 (597)
T ss_dssp             HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHcCcccHHHHH
Confidence                     3455889999999999999887 77889999999888887      9999999999999999999999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  329 (551)
                      .++.++...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+|+++++.+|.+..+|..+|.++...|+
T Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  422 (597)
T 2xpi_A          344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE  422 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999777 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713        330 LEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG  409 (551)
Q Consensus       330 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  409 (551)
                      +++|++.|++++...|++...+..++......                       +....++..+.+...          
T Consensus       423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------g~~~~A~~~~~~~~~----------  469 (597)
T 2xpi_A          423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL-----------------------GNILLANEYLQSSYA----------  469 (597)
T ss_dssp             HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH-----------------------TCHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHH----------
Confidence            99999999999999998877665554331111                       111222222222100          


Q ss_pred             CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhcc------CCCc-
Q psy12713        410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKV------DPNV-  482 (551)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~-  482 (551)
                                              ..|.++.          .....+..+...|++++|+..|+++++.      +|++ 
T Consensus       470 ------------------------~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          470 ------------------------LFQYDPL----------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             ------------------------HCCCCHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             ------------------------hCCCChH----------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence                                    0111111          1122333377789999999999999988      6664 


Q ss_pred             hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713        483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE  540 (551)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~  540 (551)
                      ..+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|+..+|....
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL  573 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999988877543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.3e-34  Score=275.32  Aligned_cols=286  Identities=15%  Similarity=0.155  Sum_probs=258.7

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC---CCchhH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS---VDPKIK  135 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~  135 (551)
                      .++..++..|.++...|++++|+..|+++++..|.   ...++..+|.++...|++++|+..++++++..|   +++...
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  111 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE  111 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence            47889999999999999999999999999999998   889999999999999999999999999999998   664433


Q ss_pred             HHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        136 VNA--------HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       136 ~~~--------~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      ...        +..+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+...
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  190 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA  190 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            221        122278999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT------------LFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                      +..+|.++...      |++++|+..++++++..|++..++.            .+|.++...|++++|+..+++++...
T Consensus       191 ~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  264 (359)
T 3ieg_A          191 FYKISTLYYQL------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE  264 (359)
T ss_dssp             HHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHc------CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999888888      9999999999999999999987654            34888999999999999999999999


Q ss_pred             CCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        276 PENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       276 ~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                      |+++.    ++..+|.++.. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++
T Consensus       265 ~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          265 PSVAEYTVRSKERICHCFSK-DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             CSSHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            99874    45678888777 99999999999999999999999999999999999999999999999999999988766


Q ss_pred             HHHh
Q psy12713        352 HIYS  355 (551)
Q Consensus       352 ~~~~  355 (551)
                      ..+.
T Consensus       344 ~~l~  347 (359)
T 3ieg_A          344 EGLE  347 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.9e-36  Score=294.52  Aligned_cols=386  Identities=12%  Similarity=0.037  Sum_probs=280.5

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc---------CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES---------TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV  130 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  130 (551)
                      .+..+..+|.++...|++++|+..|+++++.         +|.   ...++..+|.+|..+|++++|+.++++++++.+.
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~---~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR---SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT---THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            4566778999999999999999999999876         344   7788999999999999999999999999886332


Q ss_pred             -----CchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcC
Q psy12713        131 -----DPKIKVNAHIKRAVVHLHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALN  201 (551)
Q Consensus       131 -----~~~~~~~~~~~la~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~  201 (551)
                           .+. ...++..+|.++...| +++++|+.+|+++++++|+++.++..+|.++..   .++.++|+..++++++++
T Consensus       127 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          127 FSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             SCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             cccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence                 111 2445666777766543 179999999999999999999999999988655   467789999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL  281 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (551)
                      |++..++..++..+.  .++...|++++|+..+++++..+|..+.++..+|.++...|++++|+..++++++.+|+++.+
T Consensus       206 p~~~~~~~~l~~~~~--~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  283 (472)
T 4g1t_A          206 PDNQYLKVLLALKLH--KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL  283 (472)
T ss_dssp             SSCHHHHHHHHHHHH--HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CcchHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence            999999988886655  456667899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        282 YVHRAMLMLQA------------------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       282 ~~~l~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +..+|.+|...                  .+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++++
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            99999886431                  234678999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHH
Q psy12713        344 ARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKM  423 (551)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (551)
                      .|++......+.....      ...             .-.+....++..+.+..                         
T Consensus       364 ~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~Ai~~y~kal-------------------------  399 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGN------FQL-------------YQMKCEDKAIHHFIEGV-------------------------  399 (472)
T ss_dssp             CCCHHHHHHHHHHHHH------HHH-------------HTSSCHHHHHHHHHHHH-------------------------
T ss_pred             CCCChHHHHHHHHHHH------HHH-------------HHCCCHHHHHHHHHHHH-------------------------
Confidence            8887654322211100      000             00011112222222110                         


Q ss_pred             HhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHH
Q psy12713        424 TSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  503 (551)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  503 (551)
                               ...|..                    ....+....+...++++++.+|+++.++..+|.+|..+|++++|+
T Consensus       400 ---------~i~~~~--------------------~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~  450 (472)
T 4g1t_A          400 ---------KINQKS--------------------REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD  450 (472)
T ss_dssp             ---------HSCCCC--------------------HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred             ---------hcCccc--------------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                     000100                    001123455667788888999999999999999999999999999


Q ss_pred             HHHHHHhhcCCchHHHHHHHH
Q psy12713        504 RNLDKTIALNPNFHVARAQRH  524 (551)
Q Consensus       504 ~~~~~al~~~p~~~~a~~~l~  524 (551)
                      ++|++|+++.|.+|.+...+|
T Consensus       451 ~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          451 EDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHhcCCCCCcHhhcCC
Confidence            999999999999999888776

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=6.7e-35  Score=293.29  Aligned_cols=394  Identities=15%  Similarity=0.135  Sum_probs=285.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH--
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN--  137 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--  137 (551)
                      ++..++..|.++...|++++|+..|++++..+|+   ++.++..+|.++...|++++|+..|+ ++...|+.......  
T Consensus        58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~  133 (537)
T 3fp2_A           58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPM  133 (537)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHH
Confidence            5789999999999999999999999999999998   99999999999999999999999995 77766654332110  


Q ss_pred             --------------------------------------------------------------HHHHH--------HHHHH
Q psy12713        138 --------------------------------------------------------------AHIKR--------AVVHL  147 (551)
Q Consensus       138 --------------------------------------------------------------~~~~l--------a~~~~  147 (551)
                                                                                    ....+        +....
T Consensus       134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  213 (537)
T 3fp2_A          134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV  213 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHH
Confidence                                                                          00111        22333


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVAD-------SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV  220 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  220 (551)
                      ..| ++++|+..++++++.+|+++.       ++..+|.++...|++++|+..+++++..+|+ ...+..+|      .+
T Consensus       214 a~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~------~~  285 (537)
T 3fp2_A          214 AND-LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLA------LT  285 (537)
T ss_dssp             HHH-HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH------HH
T ss_pred             HHH-HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHH------HH
Confidence            446 899999999999999999855       5778889999999999999999999999999 88888888      44


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+
T Consensus       286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~  364 (537)
T 3fp2_A          286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESE  364 (537)
T ss_dssp             TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            55559999999999999999999999999999999999999999999999999999999999999999887 99999999


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcch
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRS  380 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (551)
                      ..++++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..+...   .....               
T Consensus       365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~a~---------------  426 (537)
T 3fp2_A          365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL---IGKAT---------------  426 (537)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH---HHHHH---------------
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH---HHHHH---------------
Confidence            999999999999999999999999999999999999999999887654432111100   00000               


Q ss_pred             hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-h
Q psy12713        381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-K  459 (551)
Q Consensus       381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  459 (551)
                               ........            ....++.+++..+...             ....+...+.....+...+. +
T Consensus       427 ---------~~~~~~~~------------~~~~~~~~~~~~A~~~-------------~~~a~~~~p~~~~~~~~l~~~~  472 (537)
T 3fp2_A          427 ---------ILARQSSQ------------DPTQLDEEKFNAAIKL-------------LTKACELDPRSEQAKIGLAQLK  472 (537)
T ss_dssp             ---------HHHHHHTC----------------CCHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ---------HHHHHhhc------------cchhhhHhHHHHHHHH-------------HHHHHHhCCCCHHHHHHHHHHH
Confidence                     00000000            0000111222222221             22345555555555555555 8


Q ss_pred             hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy12713        460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW  527 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  527 (551)
                      ...|++++|+..|+++++++|+..+......        +.++... .+.+..+|....-...+...+
T Consensus       473 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  531 (537)
T 3fp2_A          473 LQMEKIDEAIELFEDSAILARTMDEKLQATT--------FAEAAKI-QKRLRADPIISAKMELTLARY  531 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--CHHHHHHHH--------HHHHHHH-HHHHHTC--------------
T ss_pred             HHhccHHHHHHHHHHHHHhCCCcHHHHHHHh--------HHHHHHH-HHhccccHHHHHHHhhHHHHH
Confidence            8899999999999999999999887644222        3333333 333455666544444433333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=289.57  Aligned_cols=365  Identities=15%  Similarity=0.099  Sum_probs=303.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.++..+|.+++..|++++|+..|++++..+|+     ..++..+|.++...| ++++|+..++++++.+|+++.++..
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~   78 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLR   78 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHH
Confidence            6789999999999999999999999999999983     457788999999999 9999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------------------------------------
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNF----------------------------------------------------  204 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~----------------------------------------------------  204 (551)
                      +|.++...|++++|+..|++++...|.+                                                    
T Consensus        79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (514)
T 2gw1_A           79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL  158 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence            9999999999999999999999988743                                                    


Q ss_pred             ---------------------------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH-----h--C-------CC
Q psy12713        205 ---------------------------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD-----T--H-------SN  243 (551)
Q Consensus       205 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~--~-------~~  243 (551)
                                                 ...+...+.+.+   .+...|++++|+..+++++.     .  .       |.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (514)
T 2gw1_A          159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL---YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK  235 (514)
T ss_dssp             CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH---SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred             chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH---HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence                                       233333333221   23346999999999999999     5  3       44


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  323 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  323 (551)
                      ++.++..+|.++...|++++|+..+++++..+|+ ..++..+|.++.. .|++++|+..+++++..+|.++.++..+|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  313 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSNNSSVYYHRGQM  313 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT-SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH-CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence            5678999999999999999999999999999999 9999999999777 9999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhcc
Q psy12713        324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIR  403 (551)
Q Consensus       324 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  403 (551)
                      +...|++++|+..|++++...|++...+..++..                ....       +....++..+.+...    
T Consensus       314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~-------~~~~~A~~~~~~~~~----  366 (514)
T 2gw1_A          314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACL----------------AYRE-------NKFDDCETLFSEAKR----  366 (514)
T ss_dssp             HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH----------------TTTT-------TCHHHHHHHHHHHHH----
T ss_pred             HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH----------------HHHc-------CCHHHHHHHHHHHHH----
Confidence            9999999999999999999999977655444322                0001       111222222221100    


Q ss_pred             ccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch-hhhchhhhhcChhHHHHhhHHhhccCCCc
Q psy12713        404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE-NESGQKHAASDFTKAFADLDEAEKVDPNV  482 (551)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~  482 (551)
                                                    ..|           .....+ ..+..+...|++++|+..++++++..|++
T Consensus       367 ------------------------------~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          367 ------------------------------KFP-----------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             ------------------------------HST-----------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             ------------------------------Hcc-----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence                                          011           111122 23334777899999999999999999887


Q ss_pred             hH------HHhhhhhHHHH---hcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713        483 AD------SYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE  540 (551)
Q Consensus       483 ~~------~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~  540 (551)
                      +.      +++.+|.++..   .|++++|+..|+++++++|+++.++..+|.++...|+..+|....
T Consensus       406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  472 (514)
T 2gw1_A          406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF  472 (514)
T ss_dssp             SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            55      99999999999   999999999999999999999999999999999999988876543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=259.27  Aligned_cols=305  Identities=15%  Similarity=0.126  Sum_probs=253.9

Q ss_pred             HHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      ..+...|+++...    ..+|..+...| ++++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|
T Consensus        13 ~~~~~~~~~~~~~----~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   87 (330)
T 3hym_B           13 ESVDGLQENLDVV----VSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP   87 (330)
T ss_dssp             -------CCCTTH----HHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhchhhHHHH----HHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            3344445555433    44888888888 888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        203 NFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL  281 (551)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (551)
                      .+..++..+|.++...      | ++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++...
T Consensus        88 ~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  161 (330)
T 3hym_B           88 SNPVSWFAVGCYYLMV------GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP  161 (330)
T ss_dssp             TSTHHHHHHHHHHHHS------CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHH
T ss_pred             CCHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHH
Confidence            8888888888777777      8 88888888988888888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH
Q psy12713        282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI  361 (551)
Q Consensus       282 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  361 (551)
                      +..+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.....           
T Consensus       162 ~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------  229 (330)
T 3hym_B          162 MLYIGLEYGL-TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE-----------  229 (330)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-----------
T ss_pred             HHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-----------
Confidence            9999999777 9999999999999999999999999999999999999999999999998876432110           


Q ss_pred             HHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcch
Q psy12713        362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTK  441 (551)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (551)
                                                                                             ...      
T Consensus       230 -----------------------------------------------------------------------~~~------  232 (330)
T 3hym_B          230 -----------------------------------------------------------------------VTV------  232 (330)
T ss_dssp             -----------------------------------------------------------------------CTT------
T ss_pred             -----------------------------------------------------------------------ccc------
Confidence                                                                                   000      


Q ss_pred             hhhhhhhhcc-chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713        442 TIEESEKYGN-LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  520 (551)
Q Consensus       442 ~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  520 (551)
                           +.... ....+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus       233 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  307 (330)
T 3hym_B          233 -----DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV  307 (330)
T ss_dssp             -----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred             -----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence                 00011 112233366779999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hhh
Q psy12713        521 AQRHFVWTS-TLA  532 (551)
Q Consensus       521 ~~l~~~~~~-~~~  532 (551)
                      ..++.++.. .|+
T Consensus       308 ~~l~~~~~~~~g~  320 (330)
T 3hym_B          308 TMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhCc
Confidence            999999854 443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.1e-32  Score=254.26  Aligned_cols=241  Identities=14%  Similarity=0.121  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      ++..+..+|..++..|++++|+..+++++..+|.+....    ..++.++...| ++++|+..+++++..+|+++.++..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~   95 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL----PVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWFA   95 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTH----HHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH----HHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            445566666666666666666666666666666654432    33566666666 6666666666666666666666666


Q ss_pred             HHHHHHHhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        177 RGQIYCLFG-QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       177 la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      +|.++...| ++++|+..+++++..+|.+..++..+|.++...      |++++|+..+++++...|++..++..+|.++
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  169 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY  169 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            666666666 666666666666666666666666666666555      6666666666666666666666666666666


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------cCCHHHHHHHHHHHHH
Q psy12713        256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID---------KSCMFAYETLGTIEVQ  326 (551)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~  326 (551)
                      ...|++++|+..++++++.+|+++.++..+|.++.. .|++++|+..++++++..         |..+.++..+|.++..
T Consensus       170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~  248 (330)
T 3hym_B          170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK  248 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666555 666666666666666654         4445666666666666


Q ss_pred             hCCHHHHHHHHHHhcccccCHHH
Q psy12713        327 RGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .|++++|+.+++++++..|++..
T Consensus       249 ~g~~~~A~~~~~~a~~~~~~~~~  271 (330)
T 3hym_B          249 LKKYAEALDYHRQALVLIPQNAS  271 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             hcCHHHHHHHHHHHHhhCccchH
Confidence            66666666666666666665444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=6.1e-33  Score=264.82  Aligned_cols=265  Identities=12%  Similarity=0.094  Sum_probs=189.8

Q ss_pred             HHHhhhcHHHHHH-HHHHHhhcCCCchh-HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713         70 RAFEHEDYLTAIR-HCTEEIESTSSNHT-KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL  147 (551)
Q Consensus        70 ~~~~~g~~~~A~~-~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  147 (551)
                      ++...|+|++|+. .|++++...|.++. ....++.+|.++...|++++|+..|+++++..|.++    .++..+|.++.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~  109 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQA  109 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence            5566778888887 88877777776311 245677788888888888888888888888877763    45566888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------H
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ----------------R  211 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------~  211 (551)
                      ..| ++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+..                +
T Consensus       110 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 1fch_A          110 ENE-QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL  188 (368)
T ss_dssp             HTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred             HCc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence            888 88888888888888888888888888888888888888888888888888877665542                3


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM  289 (551)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  289 (551)
                      +.++ ..      |++++|+..+++++...|.  ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus       189 ~~~~-~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  261 (368)
T 1fch_A          189 GSLL-SD------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL  261 (368)
T ss_dssp             HHHH-HH------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHh-hc------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            3322 43      7777777777777777777  6777777777777777777777777777777777777777777776


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .. .|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++.+.|++
T Consensus       262 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          262 AN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            66 7777777777777777777777777777777777777777777777777766653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=258.01  Aligned_cols=226  Identities=15%  Similarity=0.125  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC------CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTS------VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD---  167 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~---  167 (551)
                      .+..+..+|.++..+|++++|++.|++++++.+      .++. ...++.++|.+|..+| ++++|+.++++++.+.   
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhc
Confidence            467788999999999999999999999988622      1222 2457888999999999 9999999999998763   


Q ss_pred             -----CCChhHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713        168 -----PNVADSYYQRGQIYCLF--GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT  240 (551)
Q Consensus       168 -----~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  240 (551)
                           +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.+.+..   ...++.++|+..++++++.
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL---DNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---HHSCCCCCTHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhc
Confidence                 34577888888777665  4799999999999999999999999988876654   1124557899999999999


Q ss_pred             CCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713        241 HSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  316 (551)
                      +|+++.++..+|..+..    .|++++|+..+++++..+|+.+.++..+|.++.. .|++++|+..++++++.+|+++.+
T Consensus       205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~  283 (472)
T 4g1t_A          205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYL  283 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHH
Confidence            99999999888877654    4678899999999999999999999999999777 999999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q psy12713        317 YETLGTIEVQRG  328 (551)
Q Consensus       317 ~~~l~~~~~~~g  328 (551)
                      +..+|.+|...+
T Consensus       284 ~~~lg~~y~~~~  295 (472)
T 4g1t_A          284 HCQIGCCYRAKV  295 (472)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999986543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=1.9e-31  Score=254.40  Aligned_cols=281  Identities=15%  Similarity=0.137  Sum_probs=198.2

Q ss_pred             HhcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713        148 HAASDFTKAFA-DLDEAEKVDPNVA----DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG  222 (551)
Q Consensus       148 ~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  222 (551)
                      ..| ++++|+. .+++++...|+++    ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...    
T Consensus        37 ~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----  111 (368)
T 1fch_A           37 WLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN----  111 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT----
T ss_pred             HHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence            344 5555555 5555555554442    34555555555555555555555555555555555555555555554    


Q ss_pred             ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH----------------HHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV----------------HRA  286 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~  286 (551)
                        |++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|++...+.                .++
T Consensus       112 --g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          112 --EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred             --cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence              55555555555555555555566666666666666666666666666666665554443                455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHH
Q psy12713        287 MLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM  364 (551)
Q Consensus       287 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  364 (551)
                      .+ +. .|++++|+..++++++..|.  ++.++..+|.++...|++++|+..|++++...|++..++..++         
T Consensus       190 ~~-~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~---------  258 (368)
T 1fch_A          190 SL-LS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG---------  258 (368)
T ss_dssp             HH-HH-HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------
T ss_pred             HH-hh-cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH---------
Confidence            55 44 89999999999999999998  7889999999999999999999999999988888765433222         


Q ss_pred             HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhh
Q psy12713        365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE  444 (551)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (551)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (368)
T 1fch_A          259 --------------------------------------------------------------------------------  258 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch--------
Q psy12713        445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--------  516 (551)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------  516 (551)
                                  ..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++        
T Consensus       259 ------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  326 (368)
T 1fch_A          259 ------------ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG  326 (368)
T ss_dssp             ------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred             ------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence                        114455889999999999999999999999999999999999999999999999999988        


Q ss_pred             ---HHHHHHHHHHHHHhhhhhhhhh
Q psy12713        517 ---HVARAQRHFVWTSTLAELMAFS  538 (551)
Q Consensus       517 ---~~a~~~l~~~~~~~~~~~~a~~  538 (551)
                         ..++..+|.++...|+..+|..
T Consensus       327 ~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          327 AMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             chhhHHHHHHHHHHHHhCChHhHHH
Confidence               8999999999999998776653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.98  E-value=1.9e-30  Score=247.19  Aligned_cols=272  Identities=12%  Similarity=0.050  Sum_probs=245.0

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ..++..++..|..++..|++++|+..|++++..+|.   ++.++..+|.++...|++++|+..|+++++.+|++    ..
T Consensus        62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~  134 (365)
T 4eqf_A           62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LK  134 (365)
T ss_dssp             TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HH
Confidence            345677999999999999999999999999999998   89999999999999999999999999999999988    44


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH----------HHHHHHhCCHHHHHHHHHHHHhcCCC--CH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR----------GQIYCLFGQYEEALRNLDKTIALNPN--FH  205 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~l~~~~~--~~  205 (551)
                      ++..+|.++...| ++++|+..+++++...|++...+..+          |.++...|++++|+..+++++...|.  ++
T Consensus       135 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  213 (365)
T 4eqf_A          135 ALMALAVSYTNTS-HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP  213 (365)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred             HHHHHHHHHHccc-cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence            6777999999999 99999999999999999877766655          99999999999999999999999999  89


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR  285 (551)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  285 (551)
                      ..+..+|.++...      |++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       214 ~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          214 DLQTGLGVLFHLS------GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             HHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            9999999888888      9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        286 AMLMLQARGNVDEAIKLIEKAISIDKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       286 ~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      |.++.. .|++++|+.+|+++++..|+            +..+|..++.++...|+.+.+....++.+...
T Consensus       288 ~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~  357 (365)
T 4eqf_A          288 GISCIN-LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL  357 (365)
T ss_dssp             HHHHHH-HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence            999777 99999999999999999877            36789999999999999999999888766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=8.1e-31  Score=249.70  Aligned_cols=260  Identities=17%  Similarity=0.174  Sum_probs=191.5

Q ss_pred             HHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713         82 RHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL  160 (551)
Q Consensus        82 ~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~  160 (551)
                      ..+.+.+...+.+ +.....++.+|.++...|++++|+..|+++++.+|++    ..++..+|.++...| ++++|+..|
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~  122 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENE-NEQAAIVAL  122 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCC-CHHHHHHHH
Confidence            4445555555552 1234558888888888888888888888888888877    445666888888888 888888888


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHh-hcCCChhHHHHHHHHHHH
Q psy12713        161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR---HFVVHKM-IVPGDRERVEQSLKEFRN  236 (551)
Q Consensus       161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~A~~~~~~  236 (551)
                      ++++..+|+++.++..+|.++...|++++|+..++++++..|++...+..+   +.++... ..+...|++++|+..+++
T Consensus       123 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  202 (365)
T 4eqf_A          123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE  202 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            888888888888888888888888888888888888888887776666555   1111111 455566888888888888


Q ss_pred             HHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713        237 FVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM  314 (551)
Q Consensus       237 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  314 (551)
                      ++...|.  ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++
T Consensus       203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~  281 (365)
T 4eqf_A          203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEAVEAYTRALEIQPGFI  281 (365)
T ss_dssp             HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCch
Confidence            8888888  778888888888888888888888888888888888888888888666 8888888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .++..+|.++...|++++|+.+|++++++.|+.
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            888888888888888888888888888777664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=3e-30  Score=241.78  Aligned_cols=276  Identities=13%  Similarity=0.092  Sum_probs=255.9

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ...+..++.+|..++..|++++|+..|+++++..|.   +..++..+|.++...|++++|+..++++++..|.+.    .
T Consensus        18 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~   90 (327)
T 3cv0_A           18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----A   90 (327)
T ss_dssp             GGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred             hhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----H
Confidence            346678999999999999999999999999999998   899999999999999999999999999999999884    4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR--------------GQ-IYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      ++..+|.++...| ++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++..|
T Consensus        91 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           91 VHAALAVSHTNEH-NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            6677999999999 99999999999999999998888777              76 78899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        203 NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY  282 (551)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  282 (551)
                      .+...+..++.++...      |++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|+++.++
T Consensus       170 ~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  243 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLS------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM  243 (327)
T ss_dssp             TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            9999999999888888      9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISIDKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ..+|.++.. .|++++|+..+++++...|.            ++.++..+|.++...|++++|...+++++...|++.
T Consensus       244 ~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  320 (327)
T 3cv0_A          244 YNMAVSYSN-MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF  320 (327)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred             HHHHHHHHH-hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence            999999887 99999999999999999999            789999999999999999999999999998877643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=6.5e-30  Score=240.55  Aligned_cols=257  Identities=11%  Similarity=0.040  Sum_probs=170.7

Q ss_pred             hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHHHHhCCC
Q psy12713        165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER-VEQSLKEFRNFVDTHSN  243 (551)
Q Consensus       165 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~  243 (551)
                      ..+|++..++..+|.++...|++++|+..+++++.++|++..+|..+|.++...      |+ +++|+..|++++..+|+
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~------g~d~~eAl~~~~~al~l~P~  164 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL------QKDLHEEMNYITAIIEEQPK  164 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHCTT
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------ccCHHHHHHHHHHHHHHCCC
Confidence            344444555555555555555555555555555555555555555555555444      54 55555555555555566


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  323 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  323 (551)
                      +..+|+.+|.++...|++++|+..|+++++++|++..+|.++|.++.. .|++++|+.+++++++++|++..+|..+|.+
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  243 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666444 6666666666666666666666666666666


Q ss_pred             HHH-hCCHHHH-----HHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhc
Q psy12713        324 EVQ-RGRLEEA-----VKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN  397 (551)
Q Consensus       324 ~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  397 (551)
                      +.. .|..++|     +.+|++++.++|++..++..++..                                        
T Consensus       244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l----------------------------------------  283 (382)
T 2h6f_A          244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI----------------------------------------  283 (382)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH----------------------------------------
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------------------------------------
Confidence            666 3443555     466777777777766554433211                                        


Q ss_pred             hhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhh--cChhHHHHhhHHh
Q psy12713        398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAA--SDFTKAFADLDEA  475 (551)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a  475 (551)
                                                                                   +...  +++++|+..++++
T Consensus       284 -------------------------------------------------------------l~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          284 -------------------------------------------------------------LQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             -------------------------------------------------------------HTTTCGGGCHHHHHHHHHH
T ss_pred             -------------------------------------------------------------HHccCccchHHHHHHHHHh
Confidence                                                                         0111  2578888888888


Q ss_pred             hccCCCchHHHhhhhhHHHHhc--------C-HHHHHHHHHHH-hhcCCchHHHHHHHHHHHHHh
Q psy12713        476 EKVDPNVADSYYQRGQIYCLFG--------Q-YEEALRNLDKT-IALNPNFHVARAQRHFVWTST  530 (551)
Q Consensus       476 l~~~p~~~~~~~~lg~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~~  530 (551)
                       +.+|+++.++..+|.+|..+|        + +++|+.+|+++ ++++|.....|..++..+...
T Consensus       303 -~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          303 -QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             -TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             -ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             899999999999999999985        3 59999999999 999999999999999988864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=1.7e-29  Score=237.73  Aligned_cols=254  Identities=12%  Similarity=0.060  Sum_probs=233.1

Q ss_pred             HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q psy12713         87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD-FTKAFADLDEAEK  165 (551)
Q Consensus        87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~~A~~~~~~~~~  165 (551)
                      ++..+|+   ...++..+|.++...|++++|+..+++++.++|++    ..+|+.+|.++...| + +++|+..|++++.
T Consensus        89 ai~~~p~---~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g-~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           89 QIIYSDK---FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQ-KDLHEEMNYITAIIE  160 (382)
T ss_dssp             EECCCHH---HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred             hhhCChh---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcc-cCHHHHHHHHHHHHH
Confidence            4556666   89999999999999999999999999999999998    557777999999999 8 9999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713        166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV  245 (551)
Q Consensus       166 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  245 (551)
                      ++|++..+|+.+|.++..+|++++|+..|++++.++|++..+|..+|.++...      |++++|+..++++++.+|++.
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~------g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF------KLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCCTTHHHHHHHHHHHCTTCH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999999999999999999999999998888      999999999999999999999


Q ss_pred             HHHHHHHHHHHh-ccCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        246 EACTLFAQVLVD-QEDFDGA-----EEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       246 ~~~~~la~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      .+|+.+|.++.. .|..++|     +..|++++.++|++..+|.+++.++.. .|  ++++|++.+.++ +.+|+++.++
T Consensus       235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~g~~~~~~a~~~~~~~-~~~p~~~~al  312 (382)
T 2h6f_A          235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL-QPSHSSPYLI  312 (382)
T ss_dssp             HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-cCccchHHHHHHHHHh-ccCCCCHHHH
Confidence            999999999999 5665888     599999999999999999999999665 77  689999999998 8999999999


Q ss_pred             HHHHHHHHHhC--------C-HHHHHHHHHHh-cccccCHHHHHHHHhH
Q psy12713        318 ETLGTIEVQRG--------R-LEEAVKCFNKA-LPLARDEAELSHIYSL  356 (551)
Q Consensus       318 ~~l~~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~~  356 (551)
                      ..+|.++..+|        + +++|+.+|+++ ++++|.....|..+..
T Consensus       313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~  361 (382)
T 2h6f_A          313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR  361 (382)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            99999999985        3 59999999999 9999999887766543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1.3e-29  Score=237.36  Aligned_cols=245  Identities=10%  Similarity=0.073  Sum_probs=206.6

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY  175 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  175 (551)
                      .....++.+|.++...|++++|+..++++++..|++    ..++..+|.++...| ++++|+..+++++..+|+++.++.
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~   93 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHA   93 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHH
Confidence            455778899999999999999999999999999887    446667999999999 999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HH--hh-cCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV------HK--MI-VPGDRERVEQSLKEFRNFVDTHSNVVE  246 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~------~~--~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~  246 (551)
                      .+|.++...|++++|+..+++++...|.+...+..+....      ..  .. ++...|++++|+..+++++...|.++.
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  173 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ  173 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH
Confidence            9999999999999999999999999998877766551110      00  02 466778999999999999998888888


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ++..+|.++...|++++|+..++++++.+|+++.++..+|.++.. .|++++|+..++++++..|+++.++..+|.++..
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            888999999999999999999999998888888888888888777 8899999999999988888888888888888888


Q ss_pred             hCCHHHHHHHHHHhcccccC
Q psy12713        327 RGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~  346 (551)
                      .|++++|+..+++++...|+
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhCCc
Confidence            88888888888888877665

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.97  E-value=2e-28  Score=222.89  Aligned_cols=257  Identities=14%  Similarity=0.062  Sum_probs=221.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++.++..|..++..|++++|+..|+++++.+|.   +..++..+|.++...|++++|+..+++++. .|.++.....++
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~   77 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF   77 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence            3567899999999999999999999999999998   888999999999999999999999999999 566666666778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|...+.. 
T Consensus        78 ~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-  155 (272)
T 3u4t_A           78 EYYGKILMKKG-QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-  155 (272)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-
Confidence            89999999999 9999999999999999999999999999999999999999999999999999999999999444544 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVD---PEN-----ASLYVHRAML  288 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~  288 (551)
                           +++++|+..++++++.+|+++.++..+|.++...|+   +++|+..++++++..   |+.     ..++..+|.+
T Consensus       156 -----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  230 (272)
T 3u4t_A          156 -----KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY  230 (272)
T ss_dssp             -----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence                 699999999999999999999999999999999888   888999999988875   432     2577788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713        289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG  328 (551)
Q Consensus       289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  328 (551)
                      +.. .|++++|+.+++++++.+|+++.++..++.+....+
T Consensus       231 ~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          231 YTI-NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHH-cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            776 888888888888888888888888888777665443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=3.9e-26  Score=225.83  Aligned_cols=382  Identities=13%  Similarity=0.053  Sum_probs=305.2

Q ss_pred             CcchHHHHHHHHHHHh----hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCC
Q psy12713         58 ESHELDLLSKAKRAFE----HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTS  129 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~  129 (551)
                      ..++.+++..|..+..    .+++++|+.+|+++.+.  .   ++.+++.+|.+|..    .+++++|+..|+++.+.. 
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-  109 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-  109 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence            3478999999999998    89999999999999986  3   67899999999999    999999999999998753 


Q ss_pred             CCchhHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Q psy12713        130 VDPKIKVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALN  201 (551)
Q Consensus       130 ~~~~~~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~  201 (551)
                       +    ..+++.+|.+|..    .+ ++++|+.+|+++...  +++.+++.+|.+|..    .+++++|+.+|+++++. 
T Consensus       110 -~----~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-  180 (490)
T 2xm6_A          110 -L----PQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-  180 (490)
T ss_dssp             -C----HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             -C----HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence             3    4577789999999    88 999999999999875  578999999999998    88999999999999986 


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCC
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~  277 (551)
                       .++.++..+|.++...  ....+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+|+++++.  .
T Consensus       181 -~~~~a~~~Lg~~y~~g--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~  253 (490)
T 2xm6_A          181 -GNVWSCNQLGYMYSRG--LGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--G  253 (490)
T ss_dssp             -TCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--T
T ss_pred             -CCHHHHHHHHHHHhcC--CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence             5789999999888762  12249999999999999875  568899999999997    89999999999999875  5


Q ss_pred             CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhcccccCHHH
Q psy12713        278 NASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR-----GRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       278 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      ++.+++.+|.++...   .+++++|+.+|+++.+.  .++.++..+|.++...     +++++|+.+|+++.+..+.  .
T Consensus       254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~  329 (490)
T 2xm6_A          254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--T  329 (490)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--H
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--H
Confidence            688999999985531   68999999999999865  5788999999999998     9999999999999886443  3


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhcc
Q psy12713        350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS  429 (551)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (551)
                      ....++.....            .        ....+...++..+.+..+.                             
T Consensus       330 a~~~lg~~y~~------------~--------g~~~~~~~A~~~~~~a~~~-----------------------------  360 (490)
T 2xm6_A          330 AQANLGAIYFR------------L--------GSEEEHKKAVEWFRKAAAK-----------------------------  360 (490)
T ss_dssp             HHHHHHHHHHH------------S--------CCHHHHHHHHHHHHHHHHT-----------------------------
T ss_pred             HHHHHHHHHHh------------C--------CCcccHHHHHHHHHHHHHC-----------------------------
Confidence            32222221000            0        0011233333333331110                             


Q ss_pred             CCccccCCCcchhhhhhhhhccchhhhchhhh----hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHH
Q psy12713        430 NDYEIIPGDPTKTIEESEKYGNLENESGQKHA----ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEE  501 (551)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~  501 (551)
                             +++.          ..+..+..+..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++
T Consensus       361 -------~~~~----------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~  421 (490)
T 2xm6_A          361 -------GEKA----------AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQ  421 (490)
T ss_dssp             -------TCHH----------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             -------CCHH----------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence                   0000          11122222444    58999999999999986  469999999999999    899999


Q ss_pred             HHHHHHHHhhcC---CchHHHHHHHHHHHHHhhhh
Q psy12713        502 ALRNLDKTIALN---PNFHVARAQRHFVWTSTLAE  533 (551)
Q Consensus       502 A~~~~~~al~~~---p~~~~a~~~l~~~~~~~~~~  533 (551)
                      |+.+|+++++.+   |+++.+..+++.++....+.
T Consensus       422 A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~  456 (490)
T 2xm6_A          422 AWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQ  456 (490)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHH
Confidence            999999999999   55999999999887764443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=3.3e-26  Score=228.74  Aligned_cols=398  Identities=10%  Similarity=0.001  Sum_probs=284.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ++..|+..+.. ...|++++|...|+++++..|.   +..+|..+|..+...|++++|...|++++...| +..    .|
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~----lw   82 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID----LW   82 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH----HH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH----HH
Confidence            67888888874 7889999999999999999999   999999999999999999999999999999998 433    44


Q ss_pred             HHHHHH-HHHhcCCHHHHHH----HHHHHHhc---CCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCC
Q psy12713        140 IKRAVV-HLHAASDFTKAFA----DLDEAEKV---DPNVADSYYQRGQIYCL---------FGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       140 ~~la~~-~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~~~  202 (551)
                      ...+.. ....| +++.|.+    .|++++..   +|++..+|...+.....         .|+++.|...|+++++ .|
T Consensus        83 ~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P  160 (530)
T 2ooe_A           83 KCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NP  160 (530)
T ss_dssp             HHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SC
T ss_pred             HHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-ch
Confidence            556643 34556 7777665    77777754   56778889888887765         7899999999999999 56


Q ss_pred             CCHH--HHHHHHHHH-------HHhhcCCChhHHHHHHHHHHH------HHHh-----CCCc-------HHHHHHHHHHH
Q psy12713        203 NFHV--ARAQRHFVV-------HKMIVPGDRERVEQSLKEFRN------FVDT-----HSNV-------VEACTLFAQVL  255 (551)
Q Consensus       203 ~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~la~~~  255 (551)
                      ....  .|.......       ....+....+++..|...+..      .++.     .|..       ...|.......
T Consensus       161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e  240 (530)
T 2ooe_A          161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE  240 (530)
T ss_dssp             CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence            5432  222111110       000111345788888877765      3332     2322       23444443332


Q ss_pred             Hhc----cCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------hcCCHH-------HHHHHHHHHHh-cCcCC
Q psy12713        256 VDQ----EDF----DGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVD-------EAIKLIEKAIS-IDKSC  313 (551)
Q Consensus       256 ~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~-------~A~~~~~~~~~-~~~~~  313 (551)
                      ...    ++.    ..++..|++++..+|.++.+|..+|..+..      ..|+++       +|+..|+++++ ..|++
T Consensus       241 ~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~  320 (530)
T 2ooe_A          241 KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN  320 (530)
T ss_dssp             HHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred             HcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence            221    232    478889999999999999999999988654      158876       89999999997 78999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH-HHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHH
Q psy12713        314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA-ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIK  392 (551)
Q Consensus       314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  392 (551)
                      ..+|..+|.++...|++++|...|+++++..|.++ .++..++.....                       .+....+..
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----------------------~~~~~~A~~  377 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----------------------AEGIKSGRM  377 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-----------------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-----------------------hcCHHHHHH
Confidence            99999999999999999999999999999998875 455544432111                       111222333


Q ss_pred             HHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHh
Q psy12713        393 QLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFAD  471 (551)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~  471 (551)
                      .+.+...                                  ..+.....          ....+.. +...|++++|...
T Consensus       378 ~~~~Al~----------------------------------~~~~~~~~----------~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          378 IFKKARE----------------------------------DARTRHHV----------YVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHHHHHT----------------------------------CTTCCTHH----------HHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHh----------------------------------ccCCchHH----------HHHHHHHHHHHcCChhHHHHH
Confidence            3332111                                  00000000          0011111 2346899999999


Q ss_pred             hHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH----HHHHHHHHHHHhhhhhh
Q psy12713        472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV----ARAQRHFVWTSTLAELM  535 (551)
Q Consensus       472 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~~~~~~~~~~~  535 (551)
                      |+++++.+|+++.+|..+|.++...|+.++|...|++++...|.++.    .|..........|+...
T Consensus       414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~  481 (530)
T 2ooe_A          414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  481 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999998776654    66666666666665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-26  Score=208.93  Aligned_cols=237  Identities=19%  Similarity=0.247  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------  170 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------  170 (551)
                      .+.++..+|.++...|++++|+..|+++++.. .++    .++..+|.++...| ++++|+..+++++...|++      
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~   77 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKV   77 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHH
Confidence            56788888888888888888888888888877 553    35666888888888 8888888888888887766      


Q ss_pred             -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                       +.++..+|.++...|++++|+..+++++.+.|.        +.++...      |++++|+..+++++..+|.++.++.
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~  143 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKL------RNAEKELKKAEAEAYVNPEKAEEAR  143 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHH------HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHH------hHHHHHHHHHHHHHHcCcchHHHHH
Confidence             678888888888889999999999988888876        2334444      9999999999999999999999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  329 (551)
                      .+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+.+++++++.+|+++.++..+|.++...|+
T Consensus       144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999877 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccc------cCHHHHHHHH
Q psy12713        330 LEEAVKCFNKALPLA------RDEAELSHIY  354 (551)
Q Consensus       330 ~~~A~~~~~~a~~~~------~~~~~~~~~~  354 (551)
                      +++|+.+|++++++.      |++..+...+
T Consensus       223 ~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          223 YASALETLDAARTKDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence            999999999999999      8877765544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.96  E-value=1.6e-26  Score=210.73  Aligned_cols=266  Identities=15%  Similarity=0.143  Sum_probs=234.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      .....+..|+|.+|+..++++...+|+  ...++...++.+|..+|++++|+..++..   +  .+  ...++..++..+
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~--~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~--~~--~~~a~~~la~~~   75 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPSSPE--RDVERDVFLYRAYLAQRKYGVVLDEIKPS---S--AP--ELQAVRMFAEYL   75 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCSHH--HHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S--CH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCch--hhHHHHHHHHHHHHHCCCHHHHHHHhccc---C--Ch--hHHHHHHHHHHH
Confidence            456788899999999999998888886  23578889999999999999999877541   2  22  256778899999


Q ss_pred             HHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713        147 LHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR  224 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (551)
                      ...+ +.++|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..++..++.++...      
T Consensus        76 ~~~~-~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~------  143 (291)
T 3mkr_A           76 ASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL------  143 (291)
T ss_dssp             HCST-THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT------
T ss_pred             cCCC-cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC------
Confidence            9999 999999999999876  699999999999999999999999999998     89999999999888888      


Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFA--QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL  302 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  302 (551)
                      |++++|+..++++++.+|++.......+  .++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~  222 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGV  222 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            9999999999999999999875544433  444456899999999999999999999999999999777 9999999999


Q ss_pred             HHHHHhcCcCCHHHHHHHHHHHHHhCCHHH-HHHHHHHhcccccCHHHHHHHH
Q psy12713        303 IEKAISIDKSCMFAYETLGTIEVQRGRLEE-AVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      ++++++.+|+++.++.++|.++...|+.++ +..+++++++++|+++.+....
T Consensus       223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999999976 5789999999999999876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=7.3e-27  Score=212.56  Aligned_cols=248  Identities=14%  Similarity=0.090  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----h
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----D  172 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~  172 (551)
                      +++.++.+|.+++..|++++|+..++++++.+|+++.    ++..+|.++...| ++++|+..+++++. .|.++    .
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~-~~~~A~~~~~~a~~-~~~~~~~~~~   75 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELA-KYDLAQKDIETYFS-KVNATKAKSA   75 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTT-CHHHHHHHHHHHHT-TSCTTTCCHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHh-hHHHHHHHHHHHHh-ccCchhHHHH
Confidence            4567899999999999999999999999999999866    4555999999999 99999999999999 44444    3


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                      ++..+|.++...|++++|+..++++++.+|.+..++..+|.++...      |++++|+..+++++..+|.++.++..+|
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK------GNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT------TCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc------cCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            4899999999999999999999999999999999999999998888      9999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---cCC-----HHHHHHHH
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEAIKLIEKAISID---KSC-----MFAYETLG  321 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~  321 (551)
                      ......+++++|+..|+++++.+|+++.++..+|.++.. .|+   +++|+..++++++..   |+.     ..++..+|
T Consensus       150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  228 (272)
T 3u4t_A          150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA-QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA  228 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            555556699999999999999999999999999999777 788   889999999999875   442     36889999


Q ss_pred             HHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713        322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR  357 (551)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  357 (551)
                      .++...|++++|+.+|+++++++|+++.+...+...
T Consensus       229 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~  264 (272)
T 3u4t_A          229 YYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence            999999999999999999999999999877666433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-26  Score=209.68  Aligned_cols=244  Identities=14%  Similarity=0.107  Sum_probs=226.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch---hHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK---IKV  136 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~  136 (551)
                      .+..++.+|..++..|++++|+..|+++++.. .   ++.++..+|.++...|++++|+..++++++..|++..   ...
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence            57889999999999999999999999999999 6   7899999999999999999999999999998776521   125


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      .++..+|.++...| ++++|+..+++++...|.        +.++...|++++|+..+++++..+|....++..+|.++.
T Consensus        80 ~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           80 KSFARIGNAYHKLG-DLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence            67888999999999 999999999999999987        567888899999999999999999999999999998888


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  296 (551)
                      ..      |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.. .|++
T Consensus       151 ~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~  223 (258)
T 3uq3_A          151 TK------SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEY  223 (258)
T ss_dssp             HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             Hh------cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhH
Confidence            88      9999999999999999999999999999999999999999999999999999999999999999877 9999


Q ss_pred             HHHHHHHHHHHhcC------cCCHHHHHHHHHH
Q psy12713        297 DEAIKLIEKAISID------KSCMFAYETLGTI  323 (551)
Q Consensus       297 ~~A~~~~~~~~~~~------~~~~~~~~~l~~~  323 (551)
                      ++|+.+++++++.+      |++..++..++.+
T Consensus       224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          224 ASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999998      8888887777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=228.41  Aligned_cols=264  Identities=13%  Similarity=0.122  Sum_probs=165.4

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIK  135 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~  135 (551)
                      .....++..|..++..|++++|+..|++++...|.+ .....++..+|.++...|++++|+..+++++...+  .++...
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            356667777777777777777777777777777763 11245677777777777777777777777776532  222333


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      ..++..+|.++...| ++++|+..+++++...|..      ..++..+|.++...|++..+...  ..+  ......+  
T Consensus        87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~~--~~~~~~a--  159 (406)
T 3sf4_A           87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP--QDV--GEFPEEV--  159 (406)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-----------CCCCHHH--
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc--chh--hhhhhhH--
Confidence            556666777777777 7777777777777665433      23566666666666661000000  000  0000000  


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---
Q psy12713        210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDT------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---  280 (551)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---  280 (551)
                                    ...+++|+..+++++..      .|....++..+|.++...|++++|+..++++++..+....   
T Consensus       160 --------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (406)
T 3sf4_A          160 --------------RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA  225 (406)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence                          01144444444444332      1223456778888888888888888888888876544332   


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        281 ---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       281 ---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                         ++..+|.++.. .|++++|+.++++++...|..      ..++..+|.++...|++++|+.++++++.+.
T Consensus       226 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  297 (406)
T 3sf4_A          226 ERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  297 (406)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               67777887666 788888888888887776554      5677788888888888888888888776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=1.8e-26  Score=201.32  Aligned_cols=209  Identities=15%  Similarity=0.119  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      ++.+++.+|.++...|++++|+..|+++++.+|+++    .+++.+|.++...| ++++|+..++++++.+|+++.++..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLG-LVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            556677777777777777777777777777777663    34555777777777 7777777777777777777777777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +|.++...+..             .+.          .....      |++++|+..++++++.+|+++.++..+|.++.
T Consensus        79 lg~~~~~~~~~-------------~~~----------~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~  129 (217)
T 2pl2_A           79 LSEAYVALYRQ-------------AED----------RERGK------GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA  129 (217)
T ss_dssp             HHHHHHHHHHT-------------CSS----------HHHHH------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-------------hhh----------hcccc------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            77776665200             000          00111      88888888888888888888888899999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC  336 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  336 (551)
                      ..|++++|+..|+++++++ +++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus       130 ~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~  207 (217)
T 2pl2_A          130 LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARA  207 (217)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------
T ss_pred             HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999999888 888888899988777 89999999999999999999999999999999999999999888


Q ss_pred             HHHhc
Q psy12713        337 FNKAL  341 (551)
Q Consensus       337 ~~~a~  341 (551)
                      |+++-
T Consensus       208 ~~~~~  212 (217)
T 2pl2_A          208 AALEH  212 (217)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            88764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=2.3e-26  Score=200.70  Aligned_cols=199  Identities=18%  Similarity=0.207  Sum_probs=168.8

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      +++..++..|..++..|++++|+..|+++++.+|+   ++.+++.+|.++...|++++|+..++++++.+|+++    .+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a   75 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL----GG   75 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HH
Confidence            46788999999999999999999999999999999   999999999999999999999999999999999984    46


Q ss_pred             HHHHHHHHHHh-----------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        139 HIKRAVVHLHA-----------ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       139 ~~~la~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      +..+|.++...           | ++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~  153 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKG-YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred             HHHHHHHHHHhhhhhhhhccccc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence            67799999999           9 99999999999999999999999999999999999999999999999988 88888


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                      +..+|.++...      |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus       154 ~~~la~~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          154 RSALAELYLSM------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            88888877777      888888888888888888888888888888888888888888887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.95  E-value=9e-26  Score=205.80  Aligned_cols=222  Identities=9%  Similarity=0.132  Sum_probs=106.7

Q ss_pred             HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                      -.+..|+|+.|+..+++....+|++   ...+...++.+|...| +++.|+..++.   .+|....++..++..+...|+
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g-~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQR-KYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTT-CHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCC-CHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence            3445555555555555544444332   1223344555555555 55555554433   133334445555555555555


Q ss_pred             HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH
Q psy12713        187 YEEALRNLDKTIAL--NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       187 ~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  264 (551)
                      +++|++.+++++..  +|+++.++..+|.++...      |++++|+..+++     |.++.++..+|.++...|++++|
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~------g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A  149 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD------QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA  149 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT------TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC------CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence            55555555555443  355555555555444444      555555555544     44455555555555555555555


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        265 EEYFNRSIRVDPENASLYVHRAMLML-QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      +..++++++.+|++.......+.+.+ ...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+
T Consensus       150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555555555544332222221111 11244555555555555555555555555555555554444444444444444


Q ss_pred             ccC
Q psy12713        344 ARD  346 (551)
Q Consensus       344 ~~~  346 (551)
                      +|+
T Consensus       230 ~p~  232 (291)
T 3mkr_A          230 DSG  232 (291)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=215.84  Aligned_cols=248  Identities=14%  Similarity=0.108  Sum_probs=180.8

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIK  135 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~  135 (551)
                      +..++..|..++..|++++|+..+++++...+   +.+....++..+|.++...|++++|+..+++++...|..  +...
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            57889999999999999999999999987743   225668899999999999999999999999999998753  4445


Q ss_pred             HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCCHHH
Q psy12713        136 VNAHIKRAVVHLHAASD--------------------FTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQYEE  189 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~  189 (551)
                      ..++..+|.++...| +                    +++|+..+++++..      .|....++..+|.++...|++++
T Consensus       127 ~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  205 (406)
T 3sf4_A          127 ARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD  205 (406)
T ss_dssp             HHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred             HHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHH
Confidence            568899999999999 9                    99999999999876      23335678888999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      |+..+++++.+.+......                                  ....++..+|.++...|++++|+..++
T Consensus       206 A~~~~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (406)
T 3sf4_A          206 AVIAHEQRLLIAKEFGDKA----------------------------------AERRAYSNLGNAYIFLGEFETASEYYK  251 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHH----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            9999998888765432200                                  002345556666666666666666666


Q ss_pred             HHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        270 RSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       270 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                      +++...|..      ..++..+|.++.. .|++++|+.+++++++..+..      ..++..+|.++...|++++|+.++
T Consensus       252 ~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          252 KTLLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCcCchHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            666554433      4455566666555 666666666666666554332      445666666666666666666666


Q ss_pred             HHhcccc
Q psy12713        338 NKALPLA  344 (551)
Q Consensus       338 ~~a~~~~  344 (551)
                      ++++++.
T Consensus       331 ~~al~~~  337 (406)
T 3sf4_A          331 EKHLEIS  337 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.94  E-value=9.1e-26  Score=218.53  Aligned_cols=250  Identities=13%  Similarity=0.144  Sum_probs=137.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKV  136 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~  136 (551)
                      ....++..|..++..|++++|+..|+++++..|.+ .....++..+|.++...|++++|+..+++++...  ..+.....
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            33444455555555555555555555555555542 1112345555555555555555555555555441  11112223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhc
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIAL  200 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~  200 (551)
                      .++..+|.++...| ++++|+..+++++..      .|....++..+|.++...|+          +++|..        
T Consensus       127 ~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~--------  197 (411)
T 4a1s_A          127 KSSGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE--------  197 (411)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH--------
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH--------
Confidence            34444555555555 555555555555444      22223344444444444444          000000        


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713        201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV  274 (551)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  274 (551)
                                               .+++|+..+++++...      +....++..+|.++...|++++|+.+++++++.
T Consensus       198 -------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (411)
T 4a1s_A          198 -------------------------ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI  252 (411)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                                     0444444444444332      223456777788888888888888888887776


Q ss_pred             CCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        275 DPENAS------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       275 ~~~~~~------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+....      ++..+|.++.. .|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          253 AREFGDRAAERRANSNLGNSHIF-LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            554322      66777777665 777777777777777665543      55667777777777777777777777665


Q ss_pred             cc
Q psy12713        343 LA  344 (551)
Q Consensus       343 ~~  344 (551)
                      +.
T Consensus       332 ~~  333 (411)
T 4a1s_A          332 IA  333 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=6.2e-24  Score=212.27  Aligned_cols=374  Identities=9%  Similarity=-0.005  Sum_probs=270.3

Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713         84 CTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA  163 (551)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~  163 (551)
                      ++++++.+|.   +..+|..++.. ...|++++|...|+++++..|.+..    .|..++..+...| ++++|...|+++
T Consensus         2 le~al~~~P~---~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~----~w~~~~~~~~~~~-~~~~a~~~~~ra   72 (530)
T 2ooe_A            2 AEKKLEENPY---DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGR----FWKLYIEAEIKAK-NYDKVEKLFQRC   72 (530)
T ss_dssp             HHHHHHHCTT---CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             hhhHhhhCCC---CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            6788999998   99999999984 7899999999999999999999844    5666999999999 999999999999


Q ss_pred             HhcCCCChhHHHHHHHH-HHHhCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHh---hcCCChhHHHHHHH
Q psy12713        164 EKVDPNVADSYYQRGQI-YCLFGQYEEALR----NLDKTIAL---NPNFHVARAQRHFVVHKM---IVPGDRERVEQSLK  232 (551)
Q Consensus       164 ~~~~~~~~~~~~~la~~-~~~~~~~~~A~~----~~~~~l~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~  232 (551)
                      +...| +.+.|..++.. ....|++++|.+    .|++++..   +|.+...|...+......   ..+...|+++.|..
T Consensus        73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (530)
T 2ooe_A           73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR  151 (530)
T ss_dssp             TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred             HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence            99999 67788888854 445677777665    77777654   556677777666544321   01122599999999


Q ss_pred             HHHHHHHhCCCcH--HHHHHHHHHH-------------HhccCHHHHHHHHHH------HHhc-----CCCC-------H
Q psy12713        233 EFRNFVDTHSNVV--EACTLFAQVL-------------VDQEDFDGAEEYFNR------SIRV-----DPEN-------A  279 (551)
Q Consensus       233 ~~~~~~~~~~~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------~~~~-----~~~~-------~  279 (551)
                      .|++++. .|...  ..|...+...             ...+++..|...+..      .++.     .|..       .
T Consensus       152 ~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~  230 (530)
T 2ooe_A          152 VYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV  230 (530)
T ss_dssp             HHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred             HHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence            9999999 56542  3333333221             234677888877765      4442     3332       2


Q ss_pred             HHHHHHHHHHHHhc-----CCH----HHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-------hCCHH-------HHHHH
Q psy12713        280 SLYVHRAMLMLQAR-----GNV----DEAIKLIEKAISIDKSCMFAYETLGTIEVQ-------RGRLE-------EAVKC  336 (551)
Q Consensus       280 ~~~~~l~~~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~  336 (551)
                      ..|....  .+...     ++.    ..++..|++++...|.++.+|..+|.++..       .|+++       +|+..
T Consensus       231 ~~w~~~~--~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~  308 (530)
T 2ooe_A          231 DMWKKYI--QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI  308 (530)
T ss_dssp             HHHHHHH--HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence            3443333  23311     232    488899999999999999999999999987       79987       99999


Q ss_pred             HHHhcc-cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccC
Q psy12713        337 FNKALP-LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMD  415 (551)
Q Consensus       337 ~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  415 (551)
                      |+++++ ..|++..++..++......                       +....+...+.+...                
T Consensus       309 ~~~Al~~~~p~~~~l~~~~~~~~~~~-----------------------g~~~~A~~~~~~al~----------------  349 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYFAYADYEESR-----------------------MKYEKVHSIYNRLLA----------------  349 (530)
T ss_dssp             HHHHTTTTCSSCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHhC----------------
Confidence            999997 8999998887776442111                       111222222222100                


Q ss_pred             cchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhH-H
Q psy12713        416 KADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI-Y  493 (551)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~  493 (551)
                                        ..|.++          ...+...+. ....|++++|+..|+++++..|.....+...|.+ +
T Consensus       350 ------------------~~p~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          350 ------------------IEDIDP----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  401 (530)
T ss_dssp             ------------------SSSSCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred             ------------------ccccCc----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence                              111111          011222222 4457889999999999999999888888777766 4


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713        494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAF  537 (551)
Q Consensus       494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  537 (551)
                      ...|++++|...|+++++.+|+++.+|..++.++...|+...|.
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar  445 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR  445 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence            46999999999999999999999999999999998888765543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=5.3e-23  Score=203.39  Aligned_cols=364  Identities=13%  Similarity=0.094  Sum_probs=281.1

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----hcC
Q psy12713         80 AIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----AAS  151 (551)
Q Consensus        80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~  151 (551)
                      ++..+.++.+  +.   ++.+++.+|.+|..    .+++++|+..|+++.+.  ++    ..+++.+|.+|..    .+ 
T Consensus        26 ~~~~~~~~a~--~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~-   93 (490)
T 2xm6_A           26 NLEQLKQKAE--SG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY----TPAEYVLGLRYMNGEGVPQ-   93 (490)
T ss_dssp             CHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHTSSSCC-
T ss_pred             HHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCCC-
Confidence            3444554443  34   67899999999999    89999999999999986  33    4577889999999    89 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ++++|+.+|+++...  .++.+++.+|.+|..    .+++++|+.+|+++...  +++.++..+|.++...  ....+++
T Consensus        94 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~d~  167 (490)
T 2xm6_A           94 DYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEG--DGVTRDY  167 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--SSSCCCH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--CCCCCCH
Confidence            999999999999875  578999999999999    89999999999999875  5789999999887752  1124899


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCCHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ---ARGNVDEAI  300 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~  300 (551)
                      ++|+.+|+++.+.  .++.++..+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.++..   ..+++++|+
T Consensus       168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~  243 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR  243 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            9999999999886  579999999999998    89999999999999875  568899999999764   268999999


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQ----RGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV  376 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (551)
                      .+|+++++.  .++.++..+|.++..    .+++++|+.+|+++.+..  ++.....++....         ..  ....
T Consensus       244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~---------~~--~~g~  308 (490)
T 2xm6_A          244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYD---------KG--AEGV  308 (490)
T ss_dssp             HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHH---------HC--BTTB
T ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH---------cC--CCCC
Confidence            999999875  568899999999999    999999999999998763  3333222221100         00  0000


Q ss_pred             CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713        377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES  456 (551)
Q Consensus       377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (551)
                             ..+...++..+.+..+                                    .+++           ..+...
T Consensus       309 -------~~~~~~A~~~~~~a~~------------------------------------~~~~-----------~a~~~l  334 (490)
T 2xm6_A          309 -------AKNREQAISWYTKSAE------------------------------------QGDA-----------TAQANL  334 (490)
T ss_dssp             -------CCCHHHHHHHHHHHHH------------------------------------TTCH-----------HHHHHH
T ss_pred             -------cCCHHHHHHHHHHHHh------------------------------------cCCH-----------HHHHHH
Confidence                   0112222222222110                                    0000           111112


Q ss_pred             ch-hhhh---cChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713        457 GQ-KHAA---SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       457 ~~-~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      +. +...   +++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|.
T Consensus       335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence            22 3332   3799999999999987  679999999999999    89999999999999986  46899999999999


Q ss_pred             H----hhhhhhhhh
Q psy12713        529 S----TLAELMAFS  538 (551)
Q Consensus       529 ~----~~~~~~a~~  538 (551)
                      .    .++..+|+.
T Consensus       411 ~g~g~~~d~~~A~~  424 (490)
T 2xm6_A          411 YGLGVERDYVQAWA  424 (490)
T ss_dssp             HTSSSCCCHHHHHH
T ss_pred             cCCCCCCCHHHHHH
Confidence            8    667666654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=1.5e-25  Score=210.67  Aligned_cols=261  Identities=13%  Similarity=0.119  Sum_probs=124.9

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIKVN  137 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~  137 (551)
                      ...++..|..++..|++++|+..|+++++..|.+ .....++..+|.++...|++++|+..+++++...+  .++.....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            3444555555555555555555555555555442 11134455555555555555555555555554311  11122233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  211 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  211 (551)
                      ++..+|.++...| ++++|+..+++++...|..      ..++..+|.++...|++..+         ..+....  .  
T Consensus        85 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~--~--  150 (338)
T 3ro2_A           85 ASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC---------PGPQDTG--E--  150 (338)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS---------SSCC--------
T ss_pred             HHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc---------chhhhhh--h--
Confidence            4444555555555 5555555555544443322      11444444444444440000         0000000  0  


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------H
Q psy12713        212 HFVVHKMIVPGDRERVEQSLKEFRNFVDT------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------A  279 (551)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~  279 (551)
                             ........+++|+..+++++..      .+....++..+|.++...|++++|+..++++++..+..      .
T Consensus       151 -------~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  223 (338)
T 3ro2_A          151 -------FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER  223 (338)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             -------hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence                   0000000044444444444332      11223456667777777777777777777766654322      2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      .++..+|.++.. .|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++..
T Consensus       224 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          224 RAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            255666666555 666666666666666554443      455566666666666666666666666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=2e-25  Score=209.70  Aligned_cols=250  Identities=14%  Similarity=0.115  Sum_probs=198.4

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIK  135 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~  135 (551)
                      +..+...|..+...|++++|+..+++++...+   +.+....++..+|.++...|++++|+..+++++...+..  +...
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            57788999999999999999999999987743   225668899999999999999999999999999997754  4444


Q ss_pred             HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHhCCHHH
Q psy12713        136 VNAHIKRAVVHLHAASD--------------------FTKAFADLDEAEKVD------PNVADSYYQRGQIYCLFGQYEE  189 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~  189 (551)
                      ..++..+|.++...| +                    +++|+..+++++...      +....++..+|.++...|++++
T Consensus       123 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  201 (338)
T 3ro2_A          123 ARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD  201 (338)
T ss_dssp             HHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence            568889999999999 9                    999999999988762      2335578888888888888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      |+..+++++...+....                    .              +....++..+|.++...|++++|+..++
T Consensus       202 A~~~~~~a~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          202 AVIAHEQRLLIAKEFGD--------------------K--------------AAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHHHHHHHTC--------------------H--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC--------------------h--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888866432111                    0              0113466778888888888888888888


Q ss_pred             HHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        270 RSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       270 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                      +++...+..      ..++..+|.++.. .|++++|+.++++++...+..      ..++..+|.++...|++++|..++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            888775544      5677788888776 899999999998888765432      457888999999999999999999


Q ss_pred             HHhcccccC
Q psy12713        338 NKALPLARD  346 (551)
Q Consensus       338 ~~a~~~~~~  346 (551)
                      ++++++.+.
T Consensus       327 ~~a~~~~~~  335 (338)
T 3ro2_A          327 EKHLEISRE  335 (338)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHHh
Confidence            999887665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.94  E-value=2.5e-24  Score=196.04  Aligned_cols=250  Identities=12%  Similarity=0.064  Sum_probs=216.4

Q ss_pred             HHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713         71 AFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA  149 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  149 (551)
                      ....|++++|+..|+++++..+.. +..+.++..+|.++...|++++|+..|++++..+|+++    .++..+|.++...
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~   90 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQA   90 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHT
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHc
Confidence            345699999999999999985432 35899999999999999999999999999999999884    4667799999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHH
Q psy12713        150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ  229 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (551)
                      | ++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++..|++.......+.+ ...      |++++
T Consensus        91 ~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~------~~~~~  162 (275)
T 1xnf_A           91 G-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK------LDEKQ  162 (275)
T ss_dssp             T-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH------HCHHH
T ss_pred             c-CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh------cCHHH
Confidence            9 999999999999999999999999999999999999999999999999999998666555433 444      99999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      |+..+.+++...|.+...+. ++.++...++.++|+..+++++...|..    +.++..+|.++.. .|++++|+..+++
T Consensus       163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~  240 (275)
T 1xnf_A          163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS-LGDLDSATALFKL  240 (275)
T ss_dssp             HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence            99999999999988866654 7778888899999999999999887643    6789999999877 9999999999999


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                      ++..+|++...   .+.++...|++++|++.+
T Consensus       241 al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          241 AVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            99999977544   477888999999999887

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=2.9e-25  Score=214.96  Aligned_cols=252  Identities=15%  Similarity=0.113  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHH
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKV  136 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~  136 (551)
                      ..++..|..+...|++++|+..+++++...   ++.+....++..+|.++...|++++|+..+++++...+.  +.....
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            578899999999999999999999998874   223677899999999999999999999999999998432  233346


Q ss_pred             HHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHhCCHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASD-----------------FTKAFADLDEAEKVD------PNVADSYYQRGQIYCLFGQYEEALRN  193 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~-----------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~  193 (551)
                      .++..+|.++...| +                 +++|+.++++++...      +....++..+|.++...|++++|+.+
T Consensus       167 ~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (411)
T 4a1s_A          167 RALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH  245 (411)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            68889999999999 9                 999999999988763      22345788888899999999999988


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713        194 LDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR  273 (551)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  273 (551)
                      +++++.+.+......                                  ....++..+|.++...|++++|+..+++++.
T Consensus       246 ~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          246 HQERLRIAREFGDRA----------------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHHHHHTCHH----------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            888887654311100                                  0134677888899999999999999999888


Q ss_pred             cCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        274 VDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       274 ~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      ..+..      ..++..+|.++.. .|++++|+.++++++...+..      ..++..+|.++...|++++|..+|++++
T Consensus       292 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          292 LAVELGEREVEAQSCYSLGNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            76643      5678889999777 999999999999998875432      5588999999999999999999999999


Q ss_pred             ccccCHHH
Q psy12713        342 PLARDEAE  349 (551)
Q Consensus       342 ~~~~~~~~  349 (551)
                      ++.+....
T Consensus       371 ~~~~~~~~  378 (411)
T 4a1s_A          371 QLAXXXXX  378 (411)
T ss_dssp             HHCCHHHH
T ss_pred             HHHhhccc
Confidence            98776443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=2.9e-24  Score=191.72  Aligned_cols=217  Identities=18%  Similarity=0.190  Sum_probs=129.3

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      .-.+..++.+|..++..|++++|+..|++++...|.   ...++..+|.++...|++++|+..++++++..|.+    ..
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~   92 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSA----AT   92 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----hH
Confidence            445666777777777777777777777777777776   66777777777777777777777777777776665    33


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      ++..+|.++...| ++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.+...+..++.++..
T Consensus        93 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           93 AYYGAGNVYVVKE-MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            4455777777777 777777777777777777777777777777777777777777777776666666666666655555


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      .      |++++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus       172 ~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          172 E------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             H------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             c------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            5      6666666666666666666666666666666666666666666666666666665555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=3e-24  Score=191.61  Aligned_cols=222  Identities=21%  Similarity=0.236  Sum_probs=187.2

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY  175 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  175 (551)
                      ..+..++.+|.++...|++++|+..++++++..|.+    ..++..+|.++...| ++++|+..+++++..+|.+..++.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~   95 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVN-ELERALAFYDKALELDSSAATAYY   95 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcchHHHH
Confidence            367889999999999999999999999999999988    446677999999999 999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      .+|.++...|++++|+..++++++..|.+...+..++.++...      |++++|+..+++++...|+++.++..+|.++
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888      9999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713        256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  329 (551)
                      ...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++..++.+....|+
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~  242 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH  242 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999877 9999999999999999999999999999887765553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=1e-23  Score=179.23  Aligned_cols=173  Identities=23%  Similarity=0.305  Sum_probs=129.8

Q ss_pred             CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                      +++.+|+.+|.++..+|++++|+..|+++++++|++..++..+|.++...      |++++|+..+.+++...|+++.++
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~   76 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI------GLPNDAIESLKKFVVLDTTSAEAY   76 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCchhHHHH
Confidence            34566777777777777777777777777777777777777777666666      777777777777777777777777


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG  328 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  328 (551)
                      ..+|.++...++++.|...+.+++..+|++..++..+|.++.. .|++++|+..|+++++.+|.++.++..+|.++..+|
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            7777777777777777777777777777777777777777666 777777877777777777777777777888887788


Q ss_pred             CHHHHHHHHHHhcccccCHH
Q psy12713        329 RLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       329 ~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ++++|+..|+++++++|+++
T Consensus       156 ~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          156 LRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             CHHHHHHHHHHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHhCCccCH
Confidence            88888888888777777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=3.5e-24  Score=208.36  Aligned_cols=254  Identities=12%  Similarity=0.080  Sum_probs=168.9

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQS---TKAIEDLTQLVEDTSVDPKIKVNAHIK  141 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~  141 (551)
                      ...|..++..|++++|+..|+++.+..     ++.+++.+|.++...|++   ++|+..|+++++.   +    ..+++.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~----~~A~~~   74 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S----PRAQAR   74 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCTGGGTCC-----------------------------------CHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C----HHHHHH
Confidence            457999999999999999999998764     456888999999999998   9999999999976   3    235666


Q ss_pred             HHHHHHHhc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        142 RAVVHLHAA----SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE---ALRNLDKTIALNPNFHVARAQRHFV  214 (551)
Q Consensus       142 la~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~l~~~~~~~~~~~~~~~~  214 (551)
                      +|.++...+    +++++|+.+|++++..  +++.+++.+|.+|...+...+   +...+.++..  +.++.+...+|.+
T Consensus        75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~  150 (452)
T 3e4b_A           75 LGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL  150 (452)
T ss_dssp             HHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence            898555543    2789999999999984  456688999999988776444   3444444433  3456677778877


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ  291 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  291 (551)
                      +....  .-....+.+..+++.+...+|.   +++.+|.++...|   ++++|+..|+++.+..|.....++.+|.++..
T Consensus       151 y~~~~--~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~  225 (452)
T 3e4b_A          151 YRTQG--TYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD  225 (452)
T ss_dssp             HHHHT--CGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred             HHcCC--CcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            76650  1112444555555555544444   7888888888888   88888888888888888888877888888543


Q ss_pred             hc----CCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-H--HHhCCHHHHHHHHHHhccc
Q psy12713        292 AR----GNVDEAIKLIEKAISIDKSCMFAYETLGTI-E--VQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       292 ~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~  343 (551)
                       .    +++++|+.+|+++.   |+++.+++.+|.+ +  ...+++++|+.+|+++.+.
T Consensus       226 -g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          226 -ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             -GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             -CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence             3    58888888888887   7888888888888 4  4678888888888888754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=9e-24  Score=192.37  Aligned_cols=185  Identities=10%  Similarity=0.084  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        152 DFTKAFADLDEAEKVD----PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ++++|+..++++++..    |.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...      |++
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------~~~   93 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA------GNF   93 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT------TCH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc------cCH
Confidence            5666666666666552    233455666666666666666666666666666666555555555555544      555


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      ++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++......+.. .. .|++++|+..+.+++
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-HHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-hcCHHHHHHHHHHHH
Confidence            5555555555555666666666666666666666666666666666666666555444433 33 566777777776666


Q ss_pred             hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        308 SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       308 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      ...|.+...+. ++.++...++.++|+..+++++...|
T Consensus       172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~  208 (275)
T 1xnf_A          172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT  208 (275)
T ss_dssp             HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred             hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence            66666544433 55555556666666666666665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=4.7e-23  Score=184.94  Aligned_cols=207  Identities=17%  Similarity=0.083  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      +.+++.+|.++...|++++|+..+++++...|.+    ..++..+|.++...| ++++|+..+++++..+|.+..++..+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEM-EPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            6666777777777777777777777777766665    334455677777777 77777777777777666666666666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIA--LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      |.++...|++++|+..+++++.  ..|.+...+                                        ..+|.++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------------------------------~~la~~~  151 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF----------------------------------------ENLGLVS  151 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHH----------------------------------------HHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHH----------------------------------------HHHHHHH
Confidence            7666666666666666666666  444444444                                        4445555


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713        256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK  335 (551)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  335 (551)
                      ...|++++|+..++++++..|.++.++..+|.++.. .|++++|+..++++++..|.+..++..++.++...|++++|..
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            555555555555555555555555555555555444 5555555555555555555555555555555555555555555


Q ss_pred             HHHHhcccccCHHHH
Q psy12713        336 CFNKALPLARDEAEL  350 (551)
Q Consensus       336 ~~~~a~~~~~~~~~~  350 (551)
                      +++++++..|+++..
T Consensus       231 ~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          231 YGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHCCCCHHH
Confidence            555555555554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=2.4e-23  Score=192.39  Aligned_cols=183  Identities=11%  Similarity=0.065  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCL-------FGQY-------EEALRNLDKTIA-LNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~  218 (551)
                      ++|+..|++++..+|.++.+|+.+|.++..       .|++       ++|+..|++++. +.|++..+|..++.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            344444444444444444444444444432       2442       455555555555 3455555555555444443


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD  297 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (551)
                            |++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|....++...+.+.+...|+++
T Consensus       113 ------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          113 ------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             ------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             ------CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence                  5555555555555555554443 455555555555555555555555555555544444444333222235555


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      +|+.+|+++++.+|+++.+|..+|.++...|++++|+..|++++.
T Consensus       187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            555555555555555555555555555555555555555555554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=1.3e-22  Score=181.97  Aligned_cols=212  Identities=15%  Similarity=0.085  Sum_probs=186.5

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ...+..++..|..+...|++++|+..|++++...|.   ...++..+|.++...|++++|+..++++++..|.+.    .
T Consensus        34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~  106 (252)
T 2ho1_A           34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----R  106 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----H
Confidence            334888999999999999999999999999999998   899999999999999999999999999999999874    4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ++..+|.++...| ++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus       107 ~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          107 VLNNYGGFLYEQK-RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            6677999999999 99999999999999  88888999999999999999999999999999999998888887777777


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV  283 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (551)
                      ...      |++++|+..+++++...|.+..++..++.++...|++++|...++++++..|+++....
T Consensus       186 ~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          186 YKE------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HHT------TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHc------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            666      77888888888877777777777777777777777777777777777777777766543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=4.3e-23  Score=200.67  Aligned_cols=335  Identities=14%  Similarity=0.086  Sum_probs=242.7

Q ss_pred             chHHHHHHHHHHHhhhcH---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----CchHHHHHHHHHhhcCCCC
Q psy12713         60 HELDLLSKAKRAFEHEDY---LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-----QSTKAIEDLTQLVEDTSVD  131 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~~~~  131 (551)
                      ++++++.+|..+...|++   ++|+.+|+++++.+      +.+++.+|.++...|     ++++|+..|++++...+..
T Consensus        34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~  107 (452)
T 3e4b_A           34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN  107 (452)
T ss_dssp             CCTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence            345667788888888888   99999999999763      458899999777766     7889999999999865433


Q ss_pred             chhHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH----HHHHHHHHHHhcCCCC
Q psy12713        132 PKIKVNAHIKRAVVHLHAASDFTKA---FADLDEAEKVDPNVADSYYQRGQIYCLFGQYE----EALRNLDKTIALNPNF  204 (551)
Q Consensus       132 ~~~~~~~~~~la~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----~A~~~~~~~l~~~~~~  204 (551)
                            +++.+|.+|...+ ...++   ...+.++..  +.++.+++.+|.+|...+.++    ++..+++.+...+|. 
T Consensus       108 ------A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~-  177 (452)
T 3e4b_A          108 ------TLIPLAMLYLQYP-HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI-  177 (452)
T ss_dssp             ------CHHHHHHHHHHCG-GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT-
T ss_pred             ------HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH-
Confidence                  5566999999888 65544   444444432  456889999999999999554    455555555555544 


Q ss_pred             HHHHHHHHHHHHHhhcCCChh---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhcCCC
Q psy12713        205 HVARAQRHFVVHKMIVPGDRE---RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----EDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~  277 (551)
                        ++..+|.++...      |   ++++|+..|+++....|.....++.+|.+|...    +++++|+.+|+++.   |+
T Consensus       178 --a~~~Lg~~~~~~------g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g  246 (452)
T 3e4b_A          178 --CYVELATVYQKK------QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG  246 (452)
T ss_dssp             --HHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG
T ss_pred             --HHHHHHHHHHHc------CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC
Confidence              888999888766      7   999999999999999999999999999999766    79999999999998   89


Q ss_pred             CHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHhcccccCHHHH
Q psy12713        278 NASLYVHRAMLML--QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-----RLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       278 ~~~~~~~l~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++.+++++|.+++  ...+++++|+.+|+++.+.  +++.+++.+|.+|. .|     ++++|+.+|+++.   |+++..
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            9999999999965  4489999999999999865  47999999999998 66     9999999999999   666654


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      ...++..                                                                         
T Consensus       321 ~~~Lg~~-------------------------------------------------------------------------  327 (452)
T 3e4b_A          321 DYYLGQI-------------------------------------------------------------------------  327 (452)
T ss_dssp             HHHHHHH-------------------------------------------------------------------------
T ss_pred             HHHHHHH-------------------------------------------------------------------------
Confidence            4333211                                                                         


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHHHHHHH
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNL  506 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~  506 (551)
                                            +..+  .....++++|+.+|+++.+  ++++.+.+++|.+|..    .+++++|..+|
T Consensus       328 ----------------------y~~G--~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~  381 (452)
T 3e4b_A          328 ----------------------YRRG--YLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFS  381 (452)
T ss_dssp             ----------------------HHTT--TTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred             ----------------------HHCC--CCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence                                  0000  0011489999999999987  4678999999999985    56999999999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHH
Q psy12713        507 DKTIALNPNFHVARAQRHFVWT  528 (551)
Q Consensus       507 ~~al~~~p~~~~a~~~l~~~~~  528 (551)
                      +++.+..+  +.+...++.+..
T Consensus       382 ~~A~~~g~--~~a~~~l~~l~~  401 (452)
T 3e4b_A          382 QLAKAQDT--PEANDLATQLEA  401 (452)
T ss_dssp             HHHHTTCC--HHHHHHHHHHHT
T ss_pred             HHHHHCCC--HHHHHHHHHHHH
Confidence            99998765  445555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=5.3e-23  Score=174.81  Aligned_cols=170  Identities=18%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      ..|+.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..++.++.
T Consensus         6 ~iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            6 TIYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            35566777777777 77777777777777777777777777777777777777777777777777777777777776666


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  296 (551)
                      ..      ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++
T Consensus        85 ~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~  157 (184)
T 3vtx_A           85 MI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLR  157 (184)
T ss_dssp             HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             Hc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCH
Confidence            65      7777777777777777777777777777777777777777777777777777777777777777665 7777


Q ss_pred             HHHHHHHHHHHhcCcCCH
Q psy12713        297 DEAIKLIEKAISIDKSCM  314 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~  314 (551)
                      ++|+.+|+++++.+|+++
T Consensus       158 ~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          158 DEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHhCCccCH
Confidence            777777777777777643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=3.3e-22  Score=184.76  Aligned_cols=222  Identities=11%  Similarity=0.040  Sum_probs=164.8

Q ss_pred             hHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHh-cCCCChhHHHHHHH
Q psy12713        115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH-------AASDF-------TKAFADLDEAEK-VDPNVADSYYQRGQ  179 (551)
Q Consensus       115 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~  179 (551)
                      ++|+..|++++..+|.++.    +|+.+|..+..       .| ++       ++|+..|++++. .+|++..+|..+|.
T Consensus        33 ~~a~~~~~~al~~~p~~~~----~w~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~  107 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPD----IWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD  107 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhchhhhhcc-chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4555666666666666533    33335555442       35 53       777777777777 57777777777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-
Q psy12713        180 IYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-  257 (551)
Q Consensus       180 ~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-  257 (551)
                      ++...|++++|...|++++++.|.+.. +|..++.++...      |++++|+..|+++++..|....++...+.+... 
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  181 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            777777777777777777777777665 677777666665      777778888888777777777776666555433 


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---Cc-CCHHHHHHHHHHHHHhCCHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI---DK-SCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                      .|++++|+..|+++++.+|+++.+|..++..+.. .|++++|+.+|++++..   .| ....+|..++..+...|+.++|
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            6888888888888888888888888888888655 88888888888888885   45 3677888888888888888888


Q ss_pred             HHHHHHhcccccCHH
Q psy12713        334 VKCFNKALPLARDEA  348 (551)
Q Consensus       334 ~~~~~~a~~~~~~~~  348 (551)
                      ...++++++..|++.
T Consensus       261 ~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          261 LKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHccccc
Confidence            888888888888753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=3.7e-23  Score=202.42  Aligned_cols=215  Identities=16%  Similarity=0.194  Sum_probs=199.9

Q ss_pred             CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF-TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       113 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      .+++++..+++.....|.+    ..+++.+|.++...| ++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+
T Consensus        83 ~~~~al~~l~~~~~~~~~~----a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVE----AQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCchh----HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4667788888888777766    556777999999999 99 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc----
Q psy12713        192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR---------ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----  258 (551)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----  258 (551)
                      .+|+++++++|+ ..++..+|      .++...         |++++|+..++++++.+|+++.++..+|.++...    
T Consensus       158 ~~~~~al~~~p~-~~~~~~lg------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          158 TCFSGALTHCKN-KVSLQNLS------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             HHHHHHHTTCCC-HHHHHHHH------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhCCC-HHHHHHHH------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999 68888888      455556         9999999999999999999999999999999999    


Q ss_pred             ----cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        259 ----EDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       259 ----~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                          |++++|+..|+++++++|   +++.++.++|.++.. .|++++|+..|+++++.+|+++.++..++.++...|+++
T Consensus       231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence                999999999999999999   999999999999877 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy12713        332 EAVKCFNKA  340 (551)
Q Consensus       332 ~A~~~~~~a  340 (551)
                      +|+..+.+.
T Consensus       310 eAi~~~~~~  318 (474)
T 4abn_A          310 SLLESKGKT  318 (474)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHhccc
Confidence            999988765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=3.1e-22  Score=176.14  Aligned_cols=209  Identities=14%  Similarity=0.082  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.++..+|.++...|++++|+..+++++...|+++    .++..+|.++...| ++++|+..+++++..+|.+..++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLK-VNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHH
Confidence            666777777777777777777777777777776663    34555777777777 7777777777777777777777777


Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713        177 RGQIYCLF-GQYEEALRNLDKTIA--LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ  253 (551)
Q Consensus       177 la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  253 (551)
                      +|.++... |++++|+..++++++  ..|.....+..++.++...      |++++|+..++++++..|.++.++..+|.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            77777777 777777777777776  3344444555555444444      55555555555555555555555555555


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDP-ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      ++...|++++|+..+++++...| .++..+..++.++.. .|++++|..+++.+.+..|+++.+.
T Consensus       156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            55555555555555555555555 444444444444333 5555555555555555555554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=6.3e-22  Score=179.82  Aligned_cols=234  Identities=14%  Similarity=0.147  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChh
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVAD  172 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~  172 (551)
                      ++.+++.+|.++...|++++|+.+|+++++  |++    ..+++.+|.++..    .+ ++++|+..|+++++..  ++.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~----~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~   75 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE----NSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSN   75 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC----HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC----HHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHH
Confidence            555666666666666666666666666665  333    2344556666666    66 6666666666666553  556


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        173 SYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       173 ~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                      +++.+|.++..    .+++++|+.+|+++++.  +++.++..+|.++...  ....+++++|+.+++++++..  ++.++
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~--~~~~~~~~~A~~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG--KVVTRDFKKAVEYFTKACDLN--DGDGC  149 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC--SSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC--CCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence            66666666666    66666666666666655  2556666666555540  011266666666666666654  45667


Q ss_pred             HHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713        249 TLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLG  321 (551)
Q Consensus       249 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  321 (551)
                      ..+|.++..    .+++++|+.+|+++++.  +++.++..+|.++...   .+++++|+.+++++++..|  +.++..+|
T Consensus       150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~  225 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence            777777777    77888888888887766  3567777778774331   6788888888888877755  67778888


Q ss_pred             HHHHH----hCCHHHHHHHHHHhcccccCHHH
Q psy12713        322 TIEVQ----RGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       322 ~~~~~----~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .++..    .+++++|+.+|+++++..|++..
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            88887    78888888888888888776544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=5.9e-22  Score=174.35  Aligned_cols=214  Identities=16%  Similarity=0.101  Sum_probs=200.4

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ...+..++..|..++..|++++|+..+++++...|.   ...++..+|.++...|++++|+..+++++...|.+.    .
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~   77 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----E   77 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----H
Confidence            347889999999999999999999999999999998   899999999999999999999999999999999874    4


Q ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHA-ASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  214 (551)
Q Consensus       138 ~~~~la~~~~~~-~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  214 (551)
                      ++..+|.++... | ++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.+
T Consensus        78 ~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           78 INNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            667799999999 9 99999999999999  6677789999999999999999999999999999999999999999988


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        215 VHKMIVPGDRERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR  285 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  285 (551)
                      +...      |++++|+..+++++...| .++..+..++.++...|+.++|..+++.+...+|+++.+...+
T Consensus       157 ~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          157 KMLA------GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHH------TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHc------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            8888      999999999999999999 9999999999999999999999999999999999998876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.7e-21  Score=177.04  Aligned_cols=235  Identities=12%  Similarity=0.132  Sum_probs=208.3

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCCCCchh
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTSVDPKI  134 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~  134 (551)
                      .++..++..|..+...|++++|+.+|+++++  |.   ++.+++.+|.++..    .+++++|+..|+++++..  +   
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---   73 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---   73 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---
Confidence            3678999999999999999999999999999  55   67899999999999    999999999999999875  3   


Q ss_pred             HHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHH
Q psy12713        135 KVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHV  206 (551)
Q Consensus       135 ~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~  206 (551)
                       ..+++.+|.++..    .+ ++++|+..|++++..  +++.++..+|.+|..    .+++++|+.+|+++++..  +..
T Consensus        74 -~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~  147 (273)
T 1ouv_A           74 -SNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD  147 (273)
T ss_dssp             -HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             -HHHHHHHHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence             4577889999999    99 999999999999987  488999999999999    999999999999999976  678


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLY  282 (551)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~  282 (551)
                      ++..++.++...  ....+++++|+..++++++.  +++.++..+|.++..    .+++++|+.+|+++++..|  +.++
T Consensus       148 a~~~lg~~~~~~--~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~  221 (273)
T 1ouv_A          148 GCTILGSLYDAG--RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC  221 (273)
T ss_dssp             HHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred             HHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence            888899887761  11239999999999999987  467899999999999    9999999999999999866  7899


Q ss_pred             HHHHHHHHH---hcCCHHHHHHHHHHHHhcCcCCHH
Q psy12713        283 VHRAMLMLQ---ARGNVDEAIKLIEKAISIDKSCMF  315 (551)
Q Consensus       283 ~~l~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~  315 (551)
                      ..+|.++..   ..+++++|+.+|+++++..|.++.
T Consensus       222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            999999543   168999999999999999886443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.91  E-value=5.8e-23  Score=201.04  Aligned_cols=221  Identities=14%  Similarity=0.056  Sum_probs=203.0

Q ss_pred             hcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713         75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQS-TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        75 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      +.+++++..+.+.....|.   .+.+++.+|.++...|++ ++|+..|+++++.+|++    ..++..+|.++...| ++
T Consensus        82 ~~~~~al~~l~~~~~~~~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g-~~  153 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKG-DV  153 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT-CH
T ss_pred             HHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC-CH
Confidence            4477888889988888888   999999999999999999 99999999999999998    457777999999999 99


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--hcCC
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLF---------GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM--IVPG  222 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~  222 (551)
                      ++|+..|+++++.+|+ ..++..+|.++...         |++++|+..|+++++++|++..++..+|.++...  ..-.
T Consensus       154 ~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999 79999999999999         9999999999999999999999999999877654  1112


Q ss_pred             ChhHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        223 DRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                      ..|++++|+..|++++..+|   .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++.. .|++++|
T Consensus       233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~-lg~~~eA  311 (474)
T 4abn_A          233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF-LSRLTSL  311 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHH
Confidence            34999999999999999999   9999999999999999999999999999999999999999999999666 9999999


Q ss_pred             HHHHHH
Q psy12713        300 IKLIEK  305 (551)
Q Consensus       300 ~~~~~~  305 (551)
                      +..+.+
T Consensus       312 i~~~~~  317 (474)
T 4abn_A          312 LESKGK  317 (474)
T ss_dssp             HHHTTT
T ss_pred             HHHhcc
Confidence            886654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=2.4e-22  Score=192.19  Aligned_cols=325  Identities=11%  Similarity=0.097  Sum_probs=212.7

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHH--HHHHHHhCCchHHH-----------HHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLR--ATVYIFTSQSTKAI-----------EDLT  122 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~  122 (551)
                      .+.+...+......+..+++++|..+++++.+..+..  ..+...++.+  .......++++.+.           ..++
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~   88 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL   88 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence            4466777777888888888888888888775544321  1122222222  22223344555555           4444


Q ss_pred             HHhhcCCCCchhHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---ChhHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        123 QLVEDTSVDPKIKVN--AHIKRAVVHLHAASDFTKAFADLDEAEKV---DPN---VADSYYQRGQIYCLFGQYEEALRNL  194 (551)
Q Consensus       123 ~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~  194 (551)
                      ++-. .|.+......  .++.+|..+...| ++++|+..+++++..   .++   .+.++..+|.++...|++++|+.++
T Consensus        89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~  166 (383)
T 3ulq_A           89 EIDK-KQARLTGLLEYYFNFFRGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA  166 (383)
T ss_dssp             HHHH-HTHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHh-cCCCchhHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4332 2222111111  1223566666666 666666666666654   121   2355566666666666666666666


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713        195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV  274 (551)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  274 (551)
                      ++++++.+.....                                 .+....++..+|.++...|++++|+..++++++.
T Consensus       167 ~~al~~~~~~~~~---------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (383)
T 3ulq_A          167 RQAYEIYKEHEAY---------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM  213 (383)
T ss_dssp             HHHHHHHHTCSTT---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccc---------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            6665554332110                                 1112457889999999999999999999999987


Q ss_pred             CCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        275 DPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS-----ID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       275 ~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+..      ..++.++|.++.. .|++++|+.+++++++     .+ |..+.++..+|.++...|++++|+.++++++.
T Consensus       214 ~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          214 AEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5433      2478899999877 9999999999999998     46 77788999999999999999999999999998


Q ss_pred             cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHH
Q psy12713        343 LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQK  422 (551)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (551)
                      +.+..........                                                                   
T Consensus       293 ~~~~~~~~~~~~~-------------------------------------------------------------------  305 (383)
T 3ulq_A          293 YSQKAGDVIYLSE-------------------------------------------------------------------  305 (383)
T ss_dssp             HHHHHTCHHHHHH-------------------------------------------------------------------
T ss_pred             HHHHcCCHHHHHH-------------------------------------------------------------------
Confidence            7543211100000                                                                   


Q ss_pred             HHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC---hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCH
Q psy12713        423 MTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD---FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY  499 (551)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  499 (551)
                                                   +...+..+...|+   +++|+..+++. ...|....++..+|.+|...|++
T Consensus       306 -----------------------------~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~  355 (383)
T 3ulq_A          306 -----------------------------FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNF  355 (383)
T ss_dssp             -----------------------------HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -----------------------------HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCH
Confidence                                         0011111333355   88899988887 44556778999999999999999


Q ss_pred             HHHHHHHHHHhhcCCc
Q psy12713        500 EEALRNLDKTIALNPN  515 (551)
Q Consensus       500 ~~A~~~~~~al~~~p~  515 (551)
                      ++|+.+|++++++...
T Consensus       356 ~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          356 QKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.89  E-value=2.6e-22  Score=203.49  Aligned_cols=174  Identities=21%  Similarity=0.295  Sum_probs=125.6

Q ss_pred             CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713        167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE  246 (551)
Q Consensus       167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  246 (551)
                      .|++++++.++|.++..+|++++|+..|+++++++|++..++.++|.++...      |++++|+..|+++++.+|+++.
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~------g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------GKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHH
Confidence            4666667777777777777777777777777777777777777777666666      7777777777777777777777


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ++.++|.++...|++++|+..|+++++++|++..++.++|.++.. .|++++|+..|+++++++|+++.++.++|.++..
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            777777777777777777777777777777777777777777555 7777777777777777777777777777777777


Q ss_pred             hCCHHHHHHHHHHhcccccCH
Q psy12713        327 RGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .|++++|.+.+++++++.|+.
T Consensus       158 ~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          158 VCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhChhH
Confidence            777777777777777665544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=9.6e-22  Score=173.36  Aligned_cols=204  Identities=17%  Similarity=0.195  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      .+++.+|.++...| ++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus         8 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            8 NQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            57788999999999 99999999999999998 88999999999999999999999999999999999999999999888


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV-------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRA  286 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~  286 (551)
                      ...      |++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|
T Consensus        87 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           87 RDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence            888      999999999999999999998       66999999999999999999999999999999  899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      .+++. .|     ...++++....+.+...+  .+......+.+++|+.+|+++++++|++..+...+.
T Consensus       161 ~~~~~-~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          161 VLFYN-NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHH-HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHH-HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            99765 43     455677777776665443  445566778899999999999999999988766554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=2.6e-21  Score=170.58  Aligned_cols=208  Identities=15%  Similarity=0.143  Sum_probs=184.3

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ++..++..|..++..|++++|+..|+++++..| .   +..+++.+|.++...|++++|+..++++++.+|++    ..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~   78 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL----ANA   78 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH----HHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch----HHH
Confidence            568999999999999999999999999999998 6   77889999999999999999999999999999987    456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN--FHVARA  209 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~  209 (551)
                      +..+|.++...| ++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++++|+  +..++.
T Consensus        79 ~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A           79 YIGKSAAYRDMK-NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            777999999999 99999999999999999998       67999999999999999999999999999999  899999


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      .+|.+++..      |+     ..++++....+.....+  .+......+.+++|+.+++++++++|+++.+...++.+
T Consensus       158 ~l~~~~~~~------~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          158 SLGVLFYNN------GA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHH------HH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHH------HH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            999887765      54     34566666666665443  34445667889999999999999999999998888776

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=187.11  Aligned_cols=259  Identities=16%  Similarity=0.198  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      ..++..+|.++...| ++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.....    
T Consensus        27 ~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----  101 (311)
T 3nf1_A           27 LRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK----  101 (311)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence            556667777777777 777777777777763        4445666777777777777777777777666654210    


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CCC
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PEN  278 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~  278 (551)
                                                   .. ...|....++..+|.++...|++++|+..++++++..        |..
T Consensus       102 -----------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (311)
T 3nf1_A          102 -----------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV  152 (311)
T ss_dssp             -----------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -----------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence                                         00 0023345677888888889999999999998888763        445


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ..++..+|.++.. .|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...|.....
T Consensus       153 ~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  231 (311)
T 3nf1_A          153 AKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG  231 (311)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            6678889999777 99999999999999987        66667889999999999999999999999999876542210


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      ...-                        ..                                                  
T Consensus       232 ~~~~------------------------~~--------------------------------------------------  237 (311)
T 3nf1_A          232 SVDD------------------------EN--------------------------------------------------  237 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCc------------------------ch--------------------------------------------------
Confidence            0000                        00                                                  


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  510 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  510 (551)
                              ...    ...........+.....+.+.+|+..+++++..+|..+.++..+|.+|...|++++|+.+|++++
T Consensus       238 --------~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          238 --------KPI----WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             --------CCH----HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --------HHH----HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                    000    00000111112223345778889999999999999999999999999999999999999999999


Q ss_pred             hcCCc
Q psy12713        511 ALNPN  515 (551)
Q Consensus       511 ~~~p~  515 (551)
                      ++.|+
T Consensus       306 ~l~~~  310 (311)
T 3nf1_A          306 RSRKQ  310 (311)
T ss_dssp             HHHC-
T ss_pred             HHhhc
Confidence            99875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=4.1e-21  Score=183.64  Aligned_cols=239  Identities=12%  Similarity=0.074  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------  170 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------  170 (551)
                      ..++.+|.++...|++++|+..+++++.....  ++.....++..+|.++...| ++++|+.++++++...+..      
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHH
Confidence            34556999999999999999999999987322  23334678999999999999 9999999999999985443      


Q ss_pred             -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH----
Q psy12713        171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH------VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD----  239 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----  239 (551)
                       ..++..+|.++...|++++|+.++++++.+.+...      .++..+|.++...      |++++|+.++++++.    
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ------SQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHh
Confidence             45899999999999999999999999998855432      4778888888877      999999999999999    


Q ss_pred             -hC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc
Q psy12713        240 -TH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----PENASLYVHRAMLMLQARGN---VDEAIKLIEKAISI  309 (551)
Q Consensus       240 -~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~  309 (551)
                       .+ |..+.++..+|.++...|++++|+.++++++...     |.....+..+|.++.. .|+   +++|+..+++. ..
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~-~~  334 (383)
T 3ulq_A          257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESK-ML  334 (383)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHT-TC
T ss_pred             hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-cC
Confidence             46 7788999999999999999999999999999874     3333345678888666 888   88888888876 33


Q ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        310 DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       310 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      .|....++..+|.+|...|++++|..+|++++++...
T Consensus       335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4455678899999999999999999999999887543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.88  E-value=5.5e-20  Score=165.76  Aligned_cols=252  Identities=12%  Similarity=0.075  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHhhhcH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC--CchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         62 LDLLSKAKRAFEHEDY-LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS--QSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ...+.........|.+ ++|+..+.++|..+|+   +..+|..++.++...|  ++++++..++.++..+|++..    +
T Consensus        33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----a  105 (306)
T 3dra_A           33 KQIMGLLLALMKAEEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----I  105 (306)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----H
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----H
Confidence            4445555555667776 5899999999999999   9999999999999999  999999999999999999855    5


Q ss_pred             HHHHHHHH----HHh---cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCCHHHHH
Q psy12713        139 HIKRAVVH----LHA---ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE--EALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       139 ~~~la~~~----~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      |..++.++    ...   + ++++++..++++++.+|.+..+|..++.+....|.++  +++++++++++.+|.+..+|.
T Consensus       106 W~~R~~iL~~~~~~l~~~~-~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDF-DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCC-CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence            55577777    666   6 8899999999999999999999999999999999888  999999999999999999998


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhcC---CCCHHHHHHH
Q psy12713        210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG-AEEYFNRSIRVD---PENASLYVHR  285 (551)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l  285 (551)
                      .++.+............++++++++.+++..+|.+..+|+.++.++...|+... ....+.+++..+   |.++.++..+
T Consensus       185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l  264 (306)
T 3dra_A          185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL  264 (306)
T ss_dssp             HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            888776655000111128888888888888888888888888888888877544 445666666655   6777788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-cCcCCHHHHHHHHH
Q psy12713        286 AMLMLQARGNVDEAIKLIEKAIS-IDKSCMFAYETLGT  322 (551)
Q Consensus       286 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~  322 (551)
                      +.++.+ .|+.++|+++|+.+.+ .+|-....|...+.
T Consensus       265 a~~~~~-~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          265 AKIYTQ-QKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHc-cCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            887655 7888888888888776 68877777776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.88  E-value=8.1e-21  Score=181.14  Aligned_cols=323  Identities=11%  Similarity=0.083  Sum_probs=225.9

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHH--HHHhCCchHHH---------HHHHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATV--YIFTSQSTKAI---------EDLTQL  124 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~~  124 (551)
                      .+.+...+..-..++..+++++|..+++++....+..  ......++.+-..  ....+.+..+.         ..++++
T Consensus         9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i   88 (378)
T 3q15_A            9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI   88 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence            3456777777778899999999999999875543221  1122333332222  22234444444         555554


Q ss_pred             hhcC-CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        125 VEDT-SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       125 ~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      -... +.++......++.+|..+...| ++++|+..+++++...+      ..+.++..+|.+|...|++++|+.+++++
T Consensus        89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           89 ETPQKKLTGLLKYYSLFFRGMYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3321 1122333346677888889999 99999999999887632      23567888888888888888888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713        198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  277 (551)
                      +.+.+......                                 +....++..+|.++...|++++|+..|++++++.+.
T Consensus       168 l~~~~~~~~~~---------------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          168 LDIYQNHPLYS---------------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             HHHHHTSTTCH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCch---------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            87654322100                                 012456788899999999999999999999886331


Q ss_pred             ------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        278 ------NASLYVHRAMLMLQARGNVDEAIKLIEKAIS-----IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       278 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                            ...++.++|.++.. .|++++|+.++++++.     .+|..+.++..+|.++...|++++|+.++++++.+.+.
T Consensus       215 ~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          215 IQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             cCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                  24578899999877 9999999999999998     77877899999999999999999999999999987544


Q ss_pred             HHH--HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHH
Q psy12713        347 EAE--LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT  424 (551)
Q Consensus       347 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (551)
                      ...  ....+                                                                      
T Consensus       294 ~~~~~~~~~~----------------------------------------------------------------------  303 (378)
T 3q15_A          294 RSHKFYKELF----------------------------------------------------------------------  303 (378)
T ss_dssp             TCCSCHHHHH----------------------------------------------------------------------
T ss_pred             cCCHHHHHHH----------------------------------------------------------------------
Confidence            211  00000                                                                      


Q ss_pred             hhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC---hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHH
Q psy12713        425 SILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD---FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE  501 (551)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  501 (551)
                                                  ......+...++   +.+|+..+++. ...|....++..+|.+|...|++++
T Consensus       304 ----------------------------~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~  354 (378)
T 3q15_A          304 ----------------------------LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQ  354 (378)
T ss_dssp             ----------------------------HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ----------------------------HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHH
Confidence                                        000011222234   78888888873 3445667888999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q psy12713        502 ALRNLDKTIALNP  514 (551)
Q Consensus       502 A~~~~~~al~~~p  514 (551)
                      |+.+|++++++..
T Consensus       355 A~~~~~~al~~~~  367 (378)
T 3q15_A          355 AAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=1.7e-21  Score=197.51  Aligned_cols=170  Identities=18%  Similarity=0.202  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY  175 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  175 (551)
                      .+++++..+|.++..+|++++|+..|+++++++|++    ..++.++|.++..+| ++++|+..|+++++++|+++.++.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~   81 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYS   81 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            388999999999999999999999999999999888    456777999999999 999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      ++|.++..+|++++|+..|+++++++|++..++.++|.++...      |++++|+..|+++++++|+++.++.++|.++
T Consensus        82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~------g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l  155 (723)
T 4gyw_A           82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS------GNIPEAIASYRTALKLKPDFPDAYCNLAHCL  155 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence            9999999999999999999999999999999999999888777      9999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCC
Q psy12713        256 VDQEDFDGAEEYFNRSIRVDP  276 (551)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~  276 (551)
                      ...|++++|++.+++++++.|
T Consensus       156 ~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          156 QIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhCh
Confidence            999999999999998887644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=1.5e-20  Score=169.37  Aligned_cols=205  Identities=16%  Similarity=0.183  Sum_probs=172.0

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ..++..++..|..++..|+|++|+..|++++...|.++....+++.+|.+++..|++++|+..|+++++..|+++.. ..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-PQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh-HH
Confidence            34789999999999999999999999999999999844449999999999999999999999999999999987654 56


Q ss_pred             HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHhCCHHHHHH
Q psy12713        138 AHIKRAVVHLH--------AASDFTKAFADLDEAEKVDPNVADSY-----------------YQRGQIYCLFGQYEEALR  192 (551)
Q Consensus       138 ~~~~la~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~la~~~~~~~~~~~A~~  192 (551)
                      +++.+|.++..        .| ++++|+..|++++..+|+++.+.                 +.+|.+|...|++++|+.
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQT-DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCH-HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            88999999999        99 99999999999999999987766                 788999999999999999


Q ss_pred             HHHHHHhcCCC---CHHHHHHHHHHHHHh-hc---CCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHH
Q psy12713        193 NLDKTIALNPN---FHVARAQRHFVVHKM-IV---PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFD  262 (551)
Q Consensus       193 ~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~---~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  262 (551)
                      .|+++++..|+   ...++..+|.++... ..   ....|++++|+..|+++++.+|+++   .+...++.++...++++
T Consensus       170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence            99999998887   456788888777644 11   1133788888888888888888874   45556666666666655


Q ss_pred             HH
Q psy12713        263 GA  264 (551)
Q Consensus       263 ~A  264 (551)
                      ++
T Consensus       250 ~~  251 (261)
T 3qky_A          250 GD  251 (261)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=185.53  Aligned_cols=256  Identities=15%  Similarity=0.133  Sum_probs=162.2

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-----CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-----SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT---  128 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---  128 (551)
                      ....+..++..|..+...|++++|+..++++++...     ..+....++..+|.++...|++++|+..+++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            345667778888888888888888888888877621     224566777778888888888888888888887763   


Q ss_pred             --CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        129 --SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       129 --~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                        +++ .....++..+|.++...| ++++|+..+++++...        |....++..+|.++...|++++|+.++++++
T Consensus       103 ~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          103 LGKDH-PAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HCTTC-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hCCCC-hHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              222 223556677777777777 7777777777777653        3345566677777777777777777777666


Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---
Q psy12713        199 ALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD---  275 (551)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---  275 (551)
                      ......                .   +             ...|....++..+|.++...|++++|+..++++++..   
T Consensus       181 ~~~~~~----------------~---~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          181 EIYQTK----------------L---G-------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             HHHHHT----------------S---C-------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------h---C-------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            551000                0   0             0023334556667777777777777777777776542   


Q ss_pred             ------CCCHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        276 ------PENASLYVHRAMLM-----LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       276 ------~~~~~~~~~l~~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                            +.....+...+...     ....+.+.+|...+.++....|..+.++..+|.++...|++++|+.+|++++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                  22222232222221     1225666777778888888888888899999999999999999999999998887


Q ss_pred             cC
Q psy12713        345 RD  346 (551)
Q Consensus       345 ~~  346 (551)
                      |+
T Consensus       309 ~~  310 (311)
T 3nf1_A          309 KQ  310 (311)
T ss_dssp             C-
T ss_pred             hc
Confidence            65

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.87  E-value=6.2e-19  Score=181.91  Aligned_cols=357  Identities=13%  Similarity=0.048  Sum_probs=257.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC---ch----------------hHHHHHHH---------HHHHHHHh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS---NH----------------TKALARLL---------RATVYIFT  111 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---~~----------------~~~~~~~~---------la~~~~~~  111 (551)
                      +++.--..+..+...|++.+|++.+++++ ..|.   +.                ....-+..         +|.++...
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence            34445566778889999999999999998 3343   10                01111111         37788888


Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      |.+++|...|+++-.    .    ..   .+...+...+ ++++|+++++++     +.+.+|+.+|.++...|++++|+
T Consensus      1063 glyEEAf~IYkKa~~----~----~~---A~~VLie~i~-nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDV----N----TS---AVQVLIEHIG-NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred             CCHHHHHHHHHHcCC----H----HH---HHHHHHHHHh-hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence            888999998888631    1    11   1233344778 889988888865     56889999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713        192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS  271 (551)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  271 (551)
                      ..|.++     +++..+..++.++...      |++++|++++..+.+..++ +.+...+|.+|.+.+++++ ++.|.  
T Consensus      1126 dsYiKA-----dD~say~eVa~~~~~l------GkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-- 1190 (1630)
T 1xi4_A         1126 DSYIKA-----DDPSSYMEVVQAANTS------GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-- 1190 (1630)
T ss_pred             HHHHhc-----CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH--
Confidence            999775     7788888888777777      9999999999999887744 2233458888888888885 44442  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                         ...+...+..+|..++. .|++++|..+|.++        ..|..+|.++.+.|++++|++.++++..     ...|
T Consensus      1191 ---~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-----~~aW 1253 (1630)
T 1xi4_A         1191 ---NGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----TRTW 1253 (1630)
T ss_pred             ---hCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----HHHH
Confidence               23344567789998777 99999999999985        4889999999999999999999999943     2333


Q ss_pred             HHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCC
Q psy12713        352 HIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSND  431 (551)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (551)
                      ...............+.                       ..                                .+.   
T Consensus      1254 kev~~acve~~Ef~LA~-----------------------~c--------------------------------gl~--- 1275 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQ-----------------------MC--------------------------------GLH--- 1275 (1630)
T ss_pred             HHHHHHHhhhhHHHHHH-----------------------HH--------------------------------HHh---
Confidence            32222211111111110                       00                                000   


Q ss_pred             ccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH--hcCHHHHHHHHHHH
Q psy12713        432 YEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL--FGQYEEALRNLDKT  509 (551)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~a  509 (551)
                      +.   .          ....+......|...|.|++|+.+++.++.++|.+...+..+|.+|.+  -++..++++.|...
T Consensus      1276 Ii---v----------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A         1276 IV---V----------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred             hh---c----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            00   0          000111122225667999999999999999999999999888888864  67899999999999


Q ss_pred             hhcCC-----chHHHHHHHHHHHHHhhhhhhhh
Q psy12713        510 IALNP-----NFHVARAQRHFVWTSTLAELMAF  537 (551)
Q Consensus       510 l~~~p-----~~~~a~~~l~~~~~~~~~~~~a~  537 (551)
                      +.+.|     ++...|..+..+|.+.|+...|+
T Consensus      1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            99988     89999999999999999888887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.86  E-value=5.2e-19  Score=168.50  Aligned_cols=278  Identities=13%  Similarity=0.077  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc--hhHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP--KIKV  136 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~  136 (551)
                      .......|..++..|++++|+..+++++...|..  .....++..+|.++...|++++|+..+++++...|...  ....
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4567788999999999999999999999988753  12345788999999999999999999999998765433  3334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF----  204 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----  204 (551)
                      .++..+|.++...| ++++|+..+++++...        |....++..+|.++...|++++|...+++++...+..    
T Consensus        94 ~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           94 WSLIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            56788999999999 9999999999999864        3335677889999999999999999999999987753    


Q ss_pred             -HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--c-HHHH----HHHHHHHHhccCHHHHHHHHHHHHhcCC
Q psy12713        205 -HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--V-VEAC----TLFAQVLVDQEDFDGAEEYFNRSIRVDP  276 (551)
Q Consensus       205 -~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~~  276 (551)
                       ...+..++.++...      |++++|...+++++...+.  . ....    ...+.++...|++++|...+++++...|
T Consensus       173 ~~~~~~~la~~~~~~------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          173 QLQCLAMLIQCSLAR------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             GHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence             34566777777776      9999999999999876322  2 1111    1345668899999999999999998776


Q ss_pred             CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        277 EN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       277 ~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      ..    ...+..++.++.. .|++++|...+++++...+..      ..++..+|.++...|++++|...+++++.+.+.
T Consensus       247 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          247 ANNHFLQGQWRNIARAQIL-LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             TTCGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            53    2356788888777 999999999999998765432      357888999999999999999999999987653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.86  E-value=4.3e-19  Score=159.95  Aligned_cols=230  Identities=14%  Similarity=0.108  Sum_probs=208.2

Q ss_pred             chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH----HHh---C
Q psy12713        114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIY----CLF---G  185 (551)
Q Consensus       114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~  185 (551)
                      .++|+..+.+++.++|++    ..+|...+.++...+ .++++++..++.++..+|++..+|..++.++    ...   +
T Consensus        49 s~~aL~~t~~~L~~nP~~----~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           49 SERALHITELGINELASH----YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHHHHHHCcHH----HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence            358999999999999998    557777999998877 6899999999999999999999999999999    767   7


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC---
Q psy12713        186 QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE--QSLKEFRNFVDTHSNVVEACTLFAQVLVDQED---  260 (551)
Q Consensus       186 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---  260 (551)
                      ++++++.++.++++.+|.+..+|..++.+....      |.++  ++++.+.++++.+|.+..+|...+.++...|.   
T Consensus       125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l------~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF------DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence            899999999999999999999999999888877      7777  99999999999999999999999999999988   


Q ss_pred             ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---cCCHHHHHHHHHHHHHhCCHHHH
Q psy12713        261 ---FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE-AIKLIEKAISID---KSCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       261 ---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                         ++++++++.+++..+|++..+|..++.++-. .|+... ...++.+++..+   |.++.++..++.++.+.|+.++|
T Consensus       199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence               9999999999999999999999999998555 777444 556777777766   88999999999999999999999


Q ss_pred             HHHHHHhcc-cccCHHHHHHHH
Q psy12713        334 VKCFNKALP-LARDEAELSHIY  354 (551)
Q Consensus       334 ~~~~~~a~~-~~~~~~~~~~~~  354 (551)
                      +++|+.+.+ .+|-....|...
T Consensus       278 ~~~~~~l~~~~Dpir~~yW~~~  299 (306)
T 3dra_A          278 RTVYDLLKSKYNPIRSNFWDYQ  299 (306)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHHhccChHHHHHHHHH
Confidence            999999996 799988877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=1e-19  Score=163.85  Aligned_cols=200  Identities=15%  Similarity=0.105  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---HVARA  209 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~  209 (551)
                      ...++.+|..+...| ++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+++++..|++   ..+++
T Consensus        15 ~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            446677888888888 8888888888888888888   7888888888888888888888888888887744   56677


Q ss_pred             HHHHHHHHh--hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713        210 QRHFVVHKM--IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM  287 (551)
Q Consensus       210 ~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  287 (551)
                      .+|.+++..  ..+...|++++|+..|++++..+|+++.+...+..+....++.                 ...++.+|.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL-----------------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence            788777761  1222238888888888888888887765543332222111111                 122567777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        288 LMLQARGNVDEAIKLIEKAISIDKS---CMFAYETLGTIEVQR----------GRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       288 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      +++. .|++++|+..|+++++..|+   .+.++..+|.++...          |++++|+..|+++++..|+++......
T Consensus       157 ~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          157 LYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            7666 77777777777777777776   355777777777766          777778888887777777776544433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.85  E-value=1.2e-19  Score=172.94  Aligned_cols=245  Identities=14%  Similarity=0.155  Sum_probs=141.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc---hhHHH
Q psy12713         64 LLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP---KIKVN  137 (551)
Q Consensus        64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~  137 (551)
                      ++.+|..++..|++++|+..|++++...+   +.+..+.++..+|.++...|++++|+.++++++...+...   .....
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            34455555555555555555555554421   1123445555555555555555555555555555433221   12234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  211 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  211 (551)
                      ++..+|.++...| ++++|+..+++++...+.      ...++.++|.+|..+|++++|+.++++++.+.+.        
T Consensus       184 ~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------  254 (378)
T 3q15_A          184 SLFVIAGNYDDFK-HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE--------  254 (378)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------
Confidence            4455555555555 555555555555543211      1234444555555555555555555444432100        


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----CHHHHHHHH
Q psy12713        212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----NASLYVHRA  286 (551)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~  286 (551)
                                                 ..+|..+.++..+|.++...|++++|+.+++++++..+.     ....+..++
T Consensus       255 ---------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~  307 (378)
T 3q15_A          255 ---------------------------KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ  307 (378)
T ss_dssp             ---------------------------HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred             ---------------------------hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                       045666777888888888888888888888888877432     233445566


Q ss_pred             HHHHHhcCC---HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713        287 MLMLQARGN---VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       287 ~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  346 (551)
                      .++.. .++   +.+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++....
T Consensus       308 ~ly~~-~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  368 (378)
T 3q15_A          308 AVYKE-TVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED  368 (378)
T ss_dssp             HHHSS-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            66444 677   77788777762 233444667788999999999999999999998887543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=9.8e-20  Score=166.55  Aligned_cols=176  Identities=13%  Similarity=0.088  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhhcCCChhH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN------FHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      +++|+..|+++              |.+|...|++++|+.+|++++.+.+.      ...++..+|.++...      |+
T Consensus        33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~------g~   92 (292)
T 1qqe_A           33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG------GN   92 (292)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TC
T ss_pred             HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC------CC
Confidence            66666666655              44555666666666666666655321      123444555444444      55


Q ss_pred             HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc
Q psy12713        227 VEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQAR  293 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~  293 (551)
                      +++|+.++++++.+.|..      ..++..+|.++... |++++|+.+|++++++.|..      ..++..+|.++.. .
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~  171 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-D  171 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-h
Confidence            555555555555544322      34677888888885 88888888888888876644      3567778888666 8


Q ss_pred             CCHHHHHHHHHHHHhcCcCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        294 GNVDEAIKLIEKAISIDKSCMF-------AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      |++++|+.+|+++++..|++..       ++..+|.++...|++++|+.+|++++.++|+...
T Consensus       172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            8888888888888888776543       5677888888888888888888888888776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=1e-19  Score=166.38  Aligned_cols=223  Identities=13%  Similarity=0.129  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHhcCCH
Q psy12713         76 DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        76 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      ++++|+..|.++                 |.++...|++++|+..|++++.+.+.  ++.....++..+|.++...| ++
T Consensus        32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~   93 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NS   93 (292)
T ss_dssp             HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred             cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC-CH
Confidence            366666666654                 56778889999999999999887532  33334668888999999999 99


Q ss_pred             HHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        154 TKAFADLDEAEKVDPNV------ADSYYQRGQIYCLF-GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      ++|+.+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++++.|.....                   
T Consensus        94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~-------------------  154 (292)
T 1qqe_A           94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-------------------  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh-------------------
Confidence            99999999999887643      45778888888885 88888888888888776533100                   


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCCHHHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-------LYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~A  299 (551)
                       .              ....++..+|.++...|++++|+..|+++++..|++..       .+..+|.++.. .|++++|
T Consensus       155 -~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A  218 (292)
T 1qqe_A          155 -A--------------LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAA  218 (292)
T ss_dssp             -H--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             -H--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHH
Confidence             0              00234555666666666666666666666666555432       34556666555 6666666


Q ss_pred             HHHHHHHHhcCcCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        300 IKLIEKAISIDKSCMF-----AYETLGTIEV--QRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                      +.+|+++++++|+...     .+..++..+.  ..+++++|+..|++++.++|....+.
T Consensus       219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~  277 (292)
T 1qqe_A          219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (292)
T ss_dssp             HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence            6666666666665433     2333444443  34567777777777777777665443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=1.2e-20  Score=175.01  Aligned_cols=320  Identities=11%  Similarity=0.036  Sum_probs=160.8

Q ss_pred             HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713         72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS  151 (551)
Q Consensus        72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  151 (551)
                      -..|+.++|..++++.    +    .+.+|..+|.++...|++++|++.|.++     .+    ..++...+..+...| 
T Consensus        14 ~~~~~ld~A~~fae~~----~----~~~vWs~La~A~l~~g~~~eAIdsfika-----~D----~~~y~~V~~~ae~~g-   75 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC----N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSG-   75 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC----C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC----HHHHHHHHHHHHhCC-
Confidence            3678899999999987    2    4569999999999999999999999774     22    225566888999999 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      ++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++     .| +..++..+|..++..      |.+++|.
T Consensus        76 ~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~------g~yeeA~  142 (449)
T 1b89_A           76 NWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDE------KMYDAAK  142 (449)
T ss_dssp             ----------------------------------CHHHHTTTTT-----CC-----------------------CTTTHH
T ss_pred             CHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHc------CCHHHHH
Confidence            999999999999886444 7788899999999999999888775     24 345888888555555      9999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      .+|.++        ..|..+|.++.+.|++++|++.++++     .++.+|.....++.. .|+++.|..+... +...|
T Consensus       143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~a  207 (449)
T 1b89_A          143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHA  207 (449)
T ss_dssp             HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCH
T ss_pred             HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCH
Confidence            999976        46889999999999999999999999     478899998888787 9999999887775 33444


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI  391 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  391 (551)
                      +   -...++.+|.+.|++++|+.++++++.+++.+..++..++....                                
T Consensus       208 d---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~--------------------------------  252 (449)
T 1b89_A          208 D---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS--------------------------------  252 (449)
T ss_dssp             H---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH--------------------------------
T ss_pred             h---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--------------------------------
Confidence            4   45568899999999999999999999999888776555432200                                


Q ss_pred             HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHh
Q psy12713        392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD  471 (551)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  471 (551)
                                                                                         -+.-++..++++.
T Consensus       253 -------------------------------------------------------------------ky~p~k~~ehl~~  265 (449)
T 1b89_A          253 -------------------------------------------------------------------KFKPQKMREHLEL  265 (449)
T ss_dssp             -------------------------------------------------------------------TTCHHHHHHHHHH
T ss_pred             -------------------------------------------------------------------hcCHHHHHHHHHH
Confidence                                                                               1112456677777


Q ss_pred             hHHhhccCC-----CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc------------CCchHHHHHHHHHHHHHhhhhh
Q psy12713        472 LDEAEKVDP-----NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL------------NPNFHVARAQRHFVWTSTLAEL  534 (551)
Q Consensus       472 ~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~p~~~~a~~~l~~~~~~~~~~~  534 (551)
                      |...+.+.|     +++..|..+..+|..-++|+.|+...-.....            .+.|.+.++.....|.  +..-
T Consensus       266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p  343 (449)
T 1b89_A          266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKP  343 (449)
T ss_dssp             HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCG
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCH
Confidence            777777777     67888888888888888888888877666554            6777887777777776  3333


Q ss_pred             hhhhhhc
Q psy12713        535 MAFSDEF  541 (551)
Q Consensus       535 ~a~~~~~  541 (551)
                      ..+.+.+
T Consensus       344 ~~l~~ll  350 (449)
T 1b89_A          344 LLLNDLL  350 (449)
T ss_dssp             GGHHHHH
T ss_pred             HHHHHHH
Confidence            3344433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.84  E-value=1.5e-19  Score=184.78  Aligned_cols=188  Identities=16%  Similarity=0.133  Sum_probs=166.8

Q ss_pred             hcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHh--------hcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713         89 ESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV--------EDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL  160 (551)
Q Consensus        89 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~  160 (551)
                      ..+|+   ++.+++..|   ...|++++|+..+++++        +.+|++..    +++.+|.++...| ++++|+..|
T Consensus       388 ~~~p~---~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g-~~~~A~~~~  456 (681)
T 2pzi_A          388 LVDPT---DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE----LPLMEVRALLDLG-DVAKATRKL  456 (681)
T ss_dssp             CCCTT---STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH----HHHHHHHHHHHHT-CHHHHHHHH
T ss_pred             cCCCC---CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh----HHHHHHHHHHhcC-CHHHHHHHH
Confidence            44565   666777666   78899999999999999        88888754    5666999999999 999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713        161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT  240 (551)
Q Consensus       161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  240 (551)
                      +++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++...      |++++ +..|+++++.
T Consensus       457 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          457 DDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA------GNTDE-HKFYQTVWST  529 (681)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------TCCCT-TCHHHHHHHH
T ss_pred             HHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------CChHH-HHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999888888      99999 9999999999


Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      +|+++.+++++|.++...|++++|+..|+++++++|++..++.++|.+++. .++
T Consensus       530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~-~~~  583 (681)
T 2pzi_A          530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS-GRS  583 (681)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc-cCC
Confidence            999999999999999999999999999999999999999999999998655 454

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.84  E-value=4.8e-18  Score=161.80  Aligned_cols=241  Identities=17%  Similarity=0.151  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----  171 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----  171 (551)
                      ...++..+|.++...|++++|+..+++++...|.+. .....++..+|.++...| ++++|...+++++...|...    
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHH
Confidence            467788899999999999999999999999877654 334557888999999999 99999999999998765443    


Q ss_pred             --hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC
Q psy12713        172 --DSYYQRGQIYCLFGQYEEALRNLDKTIALN--------PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH  241 (551)
Q Consensus       172 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  241 (551)
                        .++..+|.++...|++++|+..+++++...        |.....+..++.++...      |++++|...+++++...
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW------ARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHh
Confidence              346789999999999999999999999874        23345666788777777      99999999999999987


Q ss_pred             CC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        242 SN-----VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYV-----HRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       242 ~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                      +.     ...++..+|.++...|++++|...+++++...+  ..+..+.     ..+.++.. .|++++|...+++++..
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-TGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHSCCC
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-CCCHHHHHHHHHhCCCC
Confidence            65     346788999999999999999999999987632  2221221     23344556 89999999999999887


Q ss_pred             CcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        310 DKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       310 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      .|..    ...+..+|.++...|++++|...+++++...+
T Consensus       245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  284 (373)
T 1hz4_A          245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  284 (373)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            6643    33578899999999999999999999887643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.84  E-value=8e-20  Score=186.78  Aligned_cols=191  Identities=12%  Similarity=0.030  Sum_probs=171.1

Q ss_pred             HHhcCCHHHHHHHHHHHH--------hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        147 LHAASDFTKAFADLDEAE--------KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      ...| ++++|+..+++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus       402 ~~~~-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLS-QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTC-CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cccc-CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            6788 9999999999999        889999999999999999999999999999999999999999999999988888


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                            |++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++++|.++.. .|++++
T Consensus       481 ------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~  552 (681)
T 2pzi_A          481 ------GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-EGDRVG  552 (681)
T ss_dssp             ------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             ------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-cCCHHH
Confidence                  999999999999999999999999999999999999999 999999999999999999999999777 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHhcccccC
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGR--------LEEAVKCFNKALPLARD  346 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~  346 (551)
                      |+..|+++++.+|++..++.++|.++...|+        +++|...+.......|.
T Consensus       553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence            9999999999999999999999999977655        55555555554433344

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=3.6e-19  Score=151.22  Aligned_cols=169  Identities=18%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF  251 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  251 (551)
                      ..+..+|.++...|++++|+..+++++...|.+...+..++.++...      |++++|+..+++++...|.++.++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~   82 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT------GAVDRGTELLERSLADAPDNVKVATVL   82 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            34445555555555555555555555555555555555555555444      555555555555555556666666666


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                      |.++...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+++++++..|.++.++..+|.++...|+++
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence            6666666666666666666666666666666666666555 677777777777777766666667777777777777777


Q ss_pred             HHHHHHHHhcccccCH
Q psy12713        332 EAVKCFNKALPLARDE  347 (551)
Q Consensus       332 ~A~~~~~~a~~~~~~~  347 (551)
                      +|..+++++++..|++
T Consensus       162 ~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          162 EALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCc
Confidence            7777777776666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.83  E-value=1.9e-19  Score=155.58  Aligned_cols=184  Identities=11%  Similarity=0.116  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      .++..|..+...| ++++|+..|++++..+|+++.+++..+.     ...             ....+.....+|.++..
T Consensus         6 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~~~   66 (208)
T 3urz_A            6 EMLQKVSAAIEAG-QNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAYKK   66 (208)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHHHH
Confidence            3445666666666 6666666666666666665555544221     000             00001122237777776


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--C
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--N  295 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~  295 (551)
                      .      |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+++. .|  +
T Consensus        67 ~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~  139 (208)
T 3urz_A           67 N------RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL-TAEQE  139 (208)
T ss_dssp             T------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             C------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhHHH
Confidence            6      8888888888888888888888888899999999999999999999999999999999999888765 44  3


Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ...+...+.+++...|. ..+++.+|.++...|++++|+.+|++++++.|+..
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            45667777777654332 34677889999999999999999999999999854

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=6.3e-19  Score=149.70  Aligned_cols=170  Identities=15%  Similarity=0.187  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ...+..+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus         8 ~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHT-CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344555666666666 6666666666666666666666666666666666666666666666666666666666666555


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      ...      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.. .|+
T Consensus        87 ~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~  159 (186)
T 3as5_A           87 VQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGR  159 (186)
T ss_dssp             HHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCC
Confidence            555      6666666666666666666666666666666666666666666666666666666666666666555 666


Q ss_pred             HHHHHHHHHHHHhcCcCC
Q psy12713        296 VDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~  313 (551)
                      +++|..+++++++..|++
T Consensus       160 ~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          160 HEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCCc
Confidence            666666666666666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=1.5e-17  Score=171.87  Aligned_cols=317  Identities=16%  Similarity=0.109  Sum_probs=196.8

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      .|..+...|.|++|..+|+++-  .     ...+   +...+...|++++|+++++++     +.    ..+|+.+|.++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~--~-----~~~A---~~VLie~i~nldrAiE~Aerv-----n~----p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD--V-----NTSA---VQVLIEHIGNLDRAYEFAERC-----NE----PAVWSQLAKAQ 1115 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC--C-----HHHH---HHHHHHHHhhHHHHHHHHHhc-----CC----HHHHHHHHHHH
Confidence            3899999999999999999863  1     1111   122233667777777777755     12    23556677777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      ...| ++++|+..|.++     +++..+..+|.++.+.|++++|+++|..+.+..++. .....++.++.+.      ++
T Consensus      1116 l~~G-~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl------~r 1182 (1630)
T 1xi4_A         1116 LQKG-MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKT------NR 1182 (1630)
T ss_pred             HhCC-CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhh------cC
Confidence            7777 777777777664     667777777777777777777777777777665332 1222355444444      55


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      +++ ++.|.    ..+ +...+..+|..+...|++++|..+|.++        ..|..++.++.+ .|++++|++.++++
T Consensus      1183 lee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-Lge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1183 LAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-LGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-hCCHHHHHHHHHHh
Confidence            553 22221    122 2334445666666666666666666664        355566666555 66666666666655


Q ss_pred             HhcCc-------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH
Q psy12713        307 ISIDK-------------------------SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI  361 (551)
Q Consensus       307 ~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  361 (551)
                      ....+                         .+++.+..++..|...|.+++|+.++++++.++|.+..++..++....  
T Consensus      1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya-- 1325 (1630)
T 1xi4_A         1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS-- 1325 (1630)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH--
Confidence            21110                         123344456666666677777777777676666665554433322200  


Q ss_pred             HHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcch
Q psy12713        362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTK  441 (551)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (551)
                                                                                                      
T Consensus      1326 -------------------------------------------------------------------------------- 1325 (1630)
T 1xi4_A         1326 -------------------------------------------------------------------------------- 1325 (1630)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCC-----CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc----
Q psy12713        442 TIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP-----NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL----  512 (551)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----  512 (551)
                                       -+.-++..++++.|...+.+.|     +++..|..+..+|.+-|+++.|+...-.....    
T Consensus      1326 -----------------Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A         1326 -----------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred             -----------------hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence                             1122567778888888877776     67888999999999999999998544444333    


Q ss_pred             --------CCchHHHHHHHHHHHHH
Q psy12713        513 --------NPNFHVARAQRHFVWTS  529 (551)
Q Consensus       513 --------~p~~~~a~~~l~~~~~~  529 (551)
                              .+.|++.++....-|..
T Consensus      1389 ~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A         1389 GQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHh
Confidence                    67788888887777764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.83  E-value=5.3e-19  Score=152.79  Aligned_cols=186  Identities=14%  Similarity=0.103  Sum_probs=140.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++.++.+|..++..|++++|+..|++++..+|+   ++.+++..+.     ..                 .........
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~-----~~-----------------~~~~~~~~~   57 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNV-----DK-----------------NSEISSKLA   57 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHS-----CT-----------------TSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhh-----cc-----------------hhhhhHHHH
Confidence            5788999999999999999999999999999998   8887776431     10                 111112234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+++.. 
T Consensus        58 ~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-  135 (208)
T 3urz_A           58 TELALAYKKNR-NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT-  135 (208)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence            45888888888 8888888888888888888888888888888888888888888888888888888888888777655 


Q ss_pred             cCCChhH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713        220 VPGDRER--VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       220 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (551)
                           |+  ...+...+.+++...| ...+++.+|.++...|++++|+..|+++++++|+.
T Consensus       136 -----~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          136 -----AEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             -----HHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             -----hHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                 43  4456666666653222 23456778888888888999999999998888874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.83  E-value=1.2e-18  Score=152.74  Aligned_cols=196  Identities=10%  Similarity=0.050  Sum_probs=156.5

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ++..++.+|..++..|+|++|+..|++++...|.++....+++.+|.+++..|++++|+..|+++++..|+++.. ..++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~-~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-HHHH
Confidence            567899999999999999999999999999998755567899999999999999999999999999999998764 4577


Q ss_pred             HHHHHHHHH------------------hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713        140 IKRAVVHLH------------------AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN  201 (551)
Q Consensus       140 ~~la~~~~~------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  201 (551)
                      +.+|.++..                  .| ++++|+..|+++++.+|+++.++..+..+....+..              
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~--------------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH--------------
Confidence            888988876                  45 677777777777777777665443222211111100              


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (551)
                         ......+|.+++..      |++++|+..|+++++..|+++   .++..+|.++...|++++|+..++++....|++
T Consensus       147 ---~~~~~~~a~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTER------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             ---HHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             ---HHHHHHHHHHHHHc------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence               11224567777777      999999999999999998875   999999999999999999999999999888876


Q ss_pred             HH
Q psy12713        279 AS  280 (551)
Q Consensus       279 ~~  280 (551)
                      ..
T Consensus       218 ~~  219 (225)
T 2yhc_A          218 LE  219 (225)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=2.7e-20  Score=151.35  Aligned_cols=140  Identities=14%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      +|.++...| ++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...   
T Consensus         3 LG~~~~~~~-~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---   78 (150)
T 4ga2_A            3 LGSMRRSKA-DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE---   78 (150)
T ss_dssp             ----CCCHH-HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred             hHHHHHHcC-hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence            444444555 5555555555555555555555555555555555555555555555555555555555555444444   


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHH-HHHHHhcCCCCHHHHHHHHHH
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY-FNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~  288 (551)
                         |++++|+..|+++++.+|+++.++..+|.++...|++++|... ++++++++|+++.++..++.+
T Consensus        79 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l  143 (150)
T 4ga2_A           79 ---ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL  143 (150)
T ss_dssp             ---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ---CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence               4444555555544444444444444444444444444443332 244444444444444444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=4.7e-20  Score=149.94  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      ||.++...|++++|+..+++++...|+++..++.+|.+++..      |++++|+..|+++++.+|+++.++..+|.++.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   76 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA------KEYDLAKKYICTYINVQERDPKAHRFLGLLYE   76 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            555666666666666666666666666666666666666655      66666666666666666666666666666666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL-IEKAISIDKSCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~  329 (551)
                      ..|++++|+..|+++++++|+++.++..+|.++.. .|++++|... ++++++++|+++.++..++.++...|+
T Consensus        77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            66666666666666666666666666666666555 6666554443 466666666666666666666665553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=2.7e-18  Score=150.46  Aligned_cols=210  Identities=14%  Similarity=0.072  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh---H
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD---S  173 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~  173 (551)
                      .+..++.+|..++..|++++|+..|++++...|.++.. ..+++.+|.++...| ++++|+..|+++++.+|+++.   +
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-QQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            45788999999999999999999999999998876543 457788999999999 999999999999999998864   7


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ  253 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  253 (551)
                      ++.+|.++...|..     .+           ..+..++      ..+...|++++|+..|+++++.+|+++.++..+..
T Consensus        81 ~~~~g~~~~~~~~~-----~~-----------~~~~~~~------~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~  138 (225)
T 2yhc_A           81 MYMRGLTNMALDDS-----AL-----------QGFFGVD------RSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR  138 (225)
T ss_dssp             HHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-----hh-----------hhhhccc------hhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            88999998876632     11           1122223      34445589999999999999999888755433222


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH---HHHHHHHHHHHHhCCH
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM---FAYETLGTIEVQRGRL  330 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~  330 (551)
                      +....+.                 .......+|.+++. .|++++|+..|+++++..|+++   .++..+|.++..+|++
T Consensus       139 l~~~~~~-----------------~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          139 LVFLKDR-----------------LAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHHHHH-----------------HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHH-----------------HHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            2111110                 11233567888777 8999999999999999888875   6788999999999999


Q ss_pred             HHHHHHHHHhcccccCHH
Q psy12713        331 EEAVKCFNKALPLARDEA  348 (551)
Q Consensus       331 ~~A~~~~~~a~~~~~~~~  348 (551)
                      ++|+..++++....|++.
T Consensus       201 ~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          201 AQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHHhhCCCch
Confidence            999999998888877654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.81  E-value=6.8e-17  Score=146.16  Aligned_cols=233  Identities=10%  Similarity=0.072  Sum_probs=168.8

Q ss_pred             HhCCch-HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713        110 FTSQST-KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD----------FTKAFADLDEAEKVDPNVADSYYQRG  178 (551)
Q Consensus       110 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la  178 (551)
                      ..|++. +|+..+.+++..+|++    ..+|...+.++...+ .          +++++.+++.++..+|.+..+|..++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~Rr~iL~~l~-~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~  115 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDF----ATLWNCRREVLQHLE-TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC  115 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHhc-ccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345554 5677777777777766    345555666666555 4          57778888888888888888888888


Q ss_pred             HHHHHhCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713        179 QIYCLFGQ--YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER-VEQSLKEFRNFVDTHSNVVEACTLFAQVL  255 (551)
Q Consensus       179 ~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~  255 (551)
                      .++...|.  +++++.++.++++.+|.+..+|..++.+....      |. ++++++++.+++..+|.+..+|..++.++
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l------~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            88877773  77888888888888888888888777776665      65 57788888888888888888888887777


Q ss_pred             Hhc--------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCc
Q psy12713        256 VDQ--------------EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR----------GNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       256 ~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~A~~~~~~~~~~~~  311 (551)
                      ...              +.++++++++.+++..+|++..+|+.+..++....          +.++++++.++++++..|
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p  269 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP  269 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence            766              45778888888888888888888876555534422          347888888888888888


Q ss_pred             CCHHHHHHHHHHHH---HhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        312 SCMFAYETLGTIEV---QRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       312 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      ++...+..++.+..   ..|..++...++.+.++++|-...-+.-
T Consensus       270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d  314 (331)
T 3dss_A          270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  314 (331)
T ss_dssp             TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence            88555444443332   2567788888999999888887665443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.81  E-value=6.2e-17  Score=146.44  Aligned_cols=247  Identities=12%  Similarity=0.024  Sum_probs=210.3

Q ss_pred             HHhhhcHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC----------chHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         71 AFEHEDYL-TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ----------STKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        71 ~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....|++. +|+..+.+++..+|+   +..+|..++.++...|.          +++++..++.++..+|.+    ..+|
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn----y~aW  111 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTW  111 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC----HHHH
Confidence            34567775 799999999999999   99999999999988776          689999999999999999    4566


Q ss_pred             HHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASD--FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       140 ~~la~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      ...+.++...+ +  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++.
T Consensus       112 ~hR~wlL~~l~-~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          112 HHRCWLLSRLP-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHHCS-SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccC-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            77999999888 6  8999999999999999999999999999999998 699999999999999999999999998877


Q ss_pred             Hhhc--------CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHhcCCC
Q psy12713        217 KMIV--------PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-----------EDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       217 ~~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~  277 (551)
                      ....        ....+.++++++++.+++..+|++..+|+.+..++...           +.++++++.++++++..|+
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd  270 (331)
T 3dss_A          191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE  270 (331)
T ss_dssp             HHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence            5511        11237899999999999999999999998777666665           5688999999999999999


Q ss_pred             CHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713        278 NASLYVHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  325 (551)
Q Consensus       278 ~~~~~~~l~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (551)
                      +...+..++.+.  +...|..++...++.+.++++|....-|..++.-+.
T Consensus       271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~  320 (331)
T 3dss_A          271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  320 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence            966555444331  123578899999999999999998777776665443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=8e-20  Score=169.41  Aligned_cols=242  Identities=12%  Similarity=0.088  Sum_probs=121.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..|..+|..+...|++++|+..|.++    +    ++..+...+.++...|++++|+.+++.+.+..++ +.+    .
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika----~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i----~   97 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYV----E   97 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chh----H
Confidence            4578999999999999999999999764    2    5568899999999999999999999999885433 332    3


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..++.+|.+.| ++.++.++++     .| +..+|..+|..+...|.|++|..+|.++        ..+..++.++.++ 
T Consensus        98 ~~Li~~Y~Klg-~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L-  161 (449)
T 1b89_A           98 TELIFALAKTN-RLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL-  161 (449)
T ss_dssp             ------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhC-CHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh-
Confidence            44899999999 9999988775     24 4469999999999999999999999987        3577888888887 


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                           |++++|++.++++     .++.+|...+.++...|+++.|..+... +..+|+.   ...+...|. +.|++++|
T Consensus       162 -----g~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Ye-k~G~~eEa  226 (449)
T 1b89_A          162 -----GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQ-DRGYFEEL  226 (449)
T ss_dssp             -----TCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHH-HTTCHHHH
T ss_pred             -----ccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHH-HCCCHHHH
Confidence                 9999999999999     4789999999999999999999877765 3344443   445666654 49999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHHH--hCCHHHHHHHHHHhccccc
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIEVQ--RGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~  345 (551)
                      +.++++++..++.+...+..+|.+|.+  .++..+.++.|...+.+.|
T Consensus       227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            999999999999999999999998875  4566677777776666654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.81  E-value=5.6e-19  Score=161.16  Aligned_cols=200  Identities=16%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL-------  200 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------  200 (551)
                      ..++..+|.++...| ++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..       
T Consensus        43 ~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           43 ATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            334444555555555 555555555554443        1223344455555555555555555555555544       


Q ss_pred             -CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713        201 -NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRS  271 (551)
Q Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  271 (551)
                       .|....++..+|.++...      |++++|+..+++++..        .|....++..+|.++...|++++|+..++++
T Consensus       122 ~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             233344444444444433      5555555555555554        4445667788888888888888888888888


Q ss_pred             Hhc---------CCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713        272 IRV---------DPENASLYVHRAMLMLQARGN------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC  336 (551)
Q Consensus       272 ~~~---------~~~~~~~~~~l~~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  336 (551)
                      +..         .+.....+...+..... .+.      +.++...++......|..+.++..+|.++...|++++|+.+
T Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  274 (283)
T 3edt_B          196 LTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL  274 (283)
T ss_dssp             HHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            775         34445566666655332 222      44444444444444566678889999999999999999999


Q ss_pred             HHHhccc
Q psy12713        337 FNKALPL  343 (551)
Q Consensus       337 ~~~a~~~  343 (551)
                      |+++++.
T Consensus       275 ~~~al~~  281 (283)
T 3edt_B          275 EDCASRN  281 (283)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.80  E-value=7.1e-19  Score=160.48  Aligned_cols=225  Identities=13%  Similarity=0.108  Sum_probs=175.8

Q ss_pred             hhcHHHHHHHHHHHhh-------cCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----CCCchhHHHHHHH
Q psy12713         74 HEDYLTAIRHCTEEIE-------STSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-----SVDPKIKVNAHIK  141 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~  141 (551)
                      .|++++|+..|+++++       .++  +..+.++..+|.++...|++++|+..+++++...     ++++ ....++..
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~   90 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNN   90 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHH
Confidence            3444455555555444       331  2488999999999999999999999999999874     3333 34678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCCH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--------NPNFH  205 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~~  205 (551)
                      +|.++...| ++++|+..+++++..        +|....++..+|.++...|++++|+.++++++..        .|...
T Consensus        91 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           91 LAVLYGKRG-KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999999 999999999999988        4666889999999999999999999999999998        66667


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHhccC------HHHHHHHHHH
Q psy12713        206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT---------HSNVVEACTLFAQVLVDQED------FDGAEEYFNR  270 (551)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~  270 (551)
                      .++..+|.++...      |++++|+..+++++..         .+.....+...+......+.      +..+...++.
T Consensus       170 ~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (283)
T 3edt_B          170 KTKNNLASCYLKQ------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA  243 (283)
T ss_dssp             HHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence            7888999888888      9999999999999986         34445667777777766544      3444444554


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                      .....|....++..+|.++.. .|++++|+.+++++++.
T Consensus       244 ~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          244 CKVDSPTVNTTLRSLGALYRR-QGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            444556667789999999777 99999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.79  E-value=6.8e-17  Score=146.65  Aligned_cols=228  Identities=13%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh-C-CHHHH
Q psy12713        114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCLF-G-QYEEA  190 (551)
Q Consensus       114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A  190 (551)
                      .++|+..+.+++.++|++    ..+|..++.++...| . +++++..++.++..+|++..+|..++.++... + +++++
T Consensus        70 se~AL~lt~~~L~~nP~~----ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAH----YTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            345666666666666665    334555666666665 4 66677777777777777777777777666666 5 66677


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC--
Q psy12713        191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE--------QSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--  260 (551)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--  260 (551)
                      +.++.++++.+|.+..+|..++.+....      |.++        ++++.+.++++.+|.+..+|...+.++...++  
T Consensus       145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l------~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWAYLHWLYSHF------STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHHHHHHHHHHH------HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHh------ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            7777777777777777777777666555      4444        77778888888888888888888877777775  


Q ss_pred             -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----
Q psy12713        261 -----FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV--------------------DEAIKLIEKAISID-----  310 (551)
Q Consensus       261 -----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~A~~~~~~~~~~~-----  310 (551)
                           ++++++++.+++..+|++..+|..+..++.. .|+.                    ..-.......+...     
T Consensus       219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH-FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                 6778888888888888888888776666443 4432                    22222222222222     


Q ss_pred             -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc-ccccCHHHHHHH
Q psy12713        311 -KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL-PLARDEAELSHI  353 (551)
Q Consensus       311 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~  353 (551)
                       +.++.++..++.+|...|+.++|.+.++... +.+|-....|..
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~  342 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF  342 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence             4668888899999999999999999998876 567766655544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.77  E-value=6e-15  Score=147.89  Aligned_cols=399  Identities=6%  Similarity=-0.040  Sum_probs=255.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC---chHHHHHHHHHhhcCCCCchhH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ---STKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      .+...|...+......++++.+...|++++...|.   ....|...+..-...|+   ++.+...|++++...|.++.  
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s--  138 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND--  138 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC--
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC--
Confidence            36888999999888899999999999999999998   88899999998888898   99999999999998853332  


Q ss_pred             HHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHhc----CCCChhHHHHHHHHHH---------HhCCHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDF--------TKAFADLDEAEKV----DPNVADSYYQRGQIYC---------LFGQYEEALRNL  194 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~--------~~A~~~~~~~~~~----~~~~~~~~~~la~~~~---------~~~~~~~A~~~~  194 (551)
                      ...|..........+ +.        +.....|++++..    ++....+|........         .+++.+.+...|
T Consensus       139 v~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy  217 (679)
T 4e6h_A          139 LSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY  217 (679)
T ss_dssp             HHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence            223444444444444 32        3344778887763    6666777777665543         345678899999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhc---------CCChhHHHHHHHHHHHHHHh-------CCCc--------------
Q psy12713        195 DKTIALNPNFHVARAQRHFVVHKMIV---------PGDRERVEQSLKEFRNFVDT-------HSNV--------------  244 (551)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~~~~~-------~~~~--------------  244 (551)
                      ++++.+-......... ....+...+         -....+++.|...+.+.-..       .|..              
T Consensus       218 ~raL~iP~~~~~~~w~-~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~  296 (679)
T 4e6h_A          218 KTLLCQPMDCLESMWQ-RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE  296 (679)
T ss_dssp             HHHTTSCCSSHHHHHH-HHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred             HHHHhCccHHHHHHHH-HHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence            9999753232221111 111111000         00113445555555442111       1111              


Q ss_pred             -----HHHHHHHHHHHHhcc-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCc
Q psy12713        245 -----VEACTLFAQVLVDQE-------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI-KLIEKAISIDK  311 (551)
Q Consensus       245 -----~~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~~  311 (551)
                           ...|......-...+       ..+.....|++++...|.++.+|+..+..... .|+.++|. .+|++++...|
T Consensus       297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~-~~~~~~a~r~il~rAi~~~P  375 (679)
T 4e6h_A          297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE-KNTDSTVITKYLKLGQQCIP  375 (679)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HSCCTTHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhCC
Confidence                 234444444333322       12445678999999999999999999998655 88888997 99999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc-----------cC-----------HHHHHHHHhHHHHHHHHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA-----------RD-----------EAELSHIYSLRDAAIAQMKVCER  369 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~  369 (551)
                      .+...|...+.+....|+++.|...|++++...           |+           ...+|..+.....-.        
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~--------  447 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI--------  447 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc--------
Confidence            999999999999999999999999999998752           32           233444443321110        


Q ss_pred             hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713        370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY  449 (551)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (551)
                                     +....+...+.++....                                  +          ...
T Consensus       448 ---------------~~l~~AR~vf~~A~~~~----------------------------------~----------~~~  468 (679)
T 4e6h_A          448 ---------------QGLAASRKIFGKCRRLK----------------------------------K----------LVT  468 (679)
T ss_dssp             ---------------HCHHHHHHHHHHHHHTG----------------------------------G----------GSC
T ss_pred             ---------------CCHHHHHHHHHHHHHhc----------------------------------C----------CCC
Confidence                           01112222222211000                                  0          000


Q ss_pred             ccchhhhch-hhh-hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc---hHHHHHHHH
Q psy12713        450 GNLENESGQ-KHA-ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN---FHVARAQRH  524 (551)
Q Consensus       450 ~~~~~~~~~-~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~  524 (551)
                      ..++...+. -.. .++++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+   ....|....
T Consensus       469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~  548 (679)
T 4e6h_A          469 PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI  548 (679)
T ss_dssp             THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            001111111 111 245888888888888888888888888888888888888888888888888873   444555544


Q ss_pred             HHHHHhhh
Q psy12713        525 FVWTSTLA  532 (551)
Q Consensus       525 ~~~~~~~~  532 (551)
                      ..-...|+
T Consensus       549 ~fE~~~G~  556 (679)
T 4e6h_A          549 FFESKVGS  556 (679)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHcCC
Confidence            44444453

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=5.7e-18  Score=132.74  Aligned_cols=117  Identities=18%  Similarity=0.239  Sum_probs=93.5

Q ss_pred             HHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      ..++|+.+..+..+|..+++.|++++|+..|+++++.+|.++.++.++|.+++. .|++++|+..++++++++|+++.++
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhHHH
Confidence            346777777888888888888888888888888888888888888888888666 8888888888888888888888888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      ..+|.++..+|++++|+..|+++++++|++.++...+.
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            88888888888888888888888888888877655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=4.7e-18  Score=142.65  Aligned_cols=161  Identities=10%  Similarity=0.016  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      ++.+|..+...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+.+....
T Consensus         9 ~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            445777777777 777777777777777777777777777777777777777777777777777 554433332221100


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCCH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNV  296 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~  296 (551)
                           .+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..+|.++.. .|+.
T Consensus        87 -----~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~  160 (176)
T 2r5s_A           87 -----QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-LGQG  160 (176)
T ss_dssp             -----HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-HCSS
T ss_pred             -----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-hCCC
Confidence                 0111224444555555555555555555555555555555555555555444443  2344444444333 4444


Q ss_pred             HHHHHHHHHHH
Q psy12713        297 DEAIKLIEKAI  307 (551)
Q Consensus       297 ~~A~~~~~~~~  307 (551)
                      ++|+..|++++
T Consensus       161 ~~A~~~y~~al  171 (176)
T 2r5s_A          161 NAIASKYRRQL  171 (176)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            44444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.76  E-value=1.3e-17  Score=130.74  Aligned_cols=120  Identities=14%  Similarity=0.203  Sum_probs=95.1

Q ss_pred             HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713         87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV  166 (551)
Q Consensus        87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~  166 (551)
                      +..++|+   .++++..+|..+++.|++++|+..|+++++.+|.++    .++..+|.++..+| ++++|+..+++++++
T Consensus         5 ~a~inP~---~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~-~~~~A~~~~~~al~~   76 (126)
T 4gco_A            5 LAYINPE---LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLM-EFQRALDDCDTCIRL   76 (126)
T ss_dssp             --CCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhc-cHHHHHHHHHHHHHh
Confidence            3446666   788888888888888888888888888888888773    45566888888888 888888888888888


Q ss_pred             CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  214 (551)
Q Consensus       167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  214 (551)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            888888888888888888888888888888888888888877766643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=1.4e-16  Score=144.63  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=112.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-c-CH
Q psy12713        185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-E-DF  261 (551)
Q Consensus       185 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~  261 (551)
                      +..++|+..+.+++.++|++..+|..++.++...      | .+++++..+..++..+|++..+|...+.++... + ++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l------~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSL------NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence            3344555666666666666666665555555444      4 366666666666666666666666666666665 5 66


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC----
Q psy12713        262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD--------EAIKLIEKAISIDKSCMFAYETLGTIEVQRGR----  329 (551)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  329 (551)
                      ++++..+.++++.+|.+..+|..++.+.-. .|.++        +++++++++++.+|.+..+|..++.+....++    
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence            777777777777777777777777776333 55555        77778888888888888888888887777776    


Q ss_pred             ---HHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        330 ---LEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       330 ---~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                         ++++++++++++.++|++..+|..+.
T Consensus       221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr  249 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIPHNVSAWNYLR  249 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence               68888888888888888888776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.75  E-value=2.2e-17  Score=138.55  Aligned_cols=168  Identities=12%  Similarity=0.075  Sum_probs=135.5

Q ss_pred             CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713        167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE  246 (551)
Q Consensus       167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  246 (551)
                      +|...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...      |++++|+..+++++...| ++.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~------g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET------KQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT------TCHHHHHHHHTTCCGGGC-CHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHhhhccC-ChH
Confidence            3455667888888888899999999999999888898888888888888777      889999999998888888 776


Q ss_pred             HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHHHHHHHHH
Q psy12713        247 ACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTI  323 (551)
Q Consensus       247 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~  323 (551)
                      .+...+.+.. ..+...+|+..++++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|+.  +.++..+|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence            6666554433 33445567888888888899888888889988776 899999999999998888865  5688888999


Q ss_pred             HHHhCCHHHHHHHHHHhcc
Q psy12713        324 EVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       324 ~~~~g~~~~A~~~~~~a~~  342 (551)
                      +...|+.++|+..|++++.
T Consensus       154 ~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          154 LSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            9999999889888888764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=5.3e-18  Score=136.66  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      +++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++.. .|++++|+..|+
T Consensus        16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~   94 (151)
T 3gyz_A           16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYA   94 (151)
T ss_dssp             HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence            4555555667788889999999999999999999999999999999999999999999999999777 999999999999


Q ss_pred             HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ++++++|+++.+++++|.++...|++++|+..|++++++.|+.+
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=5.4e-17  Score=147.68  Aligned_cols=168  Identities=15%  Similarity=0.123  Sum_probs=130.1

Q ss_pred             CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713        168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA  247 (551)
Q Consensus       168 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  247 (551)
                      |++...+..+|..+...|++++|+..|++++..+|++..++..+|.++...      |++++|+..+++++..+|+....
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~------g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL------NRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT------TCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC------CCHHHHHHHHHhCchhhcchHHH
Confidence            666777777777777777777777777777777777777777777666666      77777777777777777766666


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHH
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEV  325 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~  325 (551)
                      ....+..+...++.++|+..+++++..+|+++.+++.+|.++.. .|++++|+..|.++++.+|++  ..++..++.++.
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            66666667777788888888888888888888888888888666 888888888888888888877  778888888888


Q ss_pred             HhCCHHHHHHHHHHhcc
Q psy12713        326 QRGRLEEAVKCFNKALP  342 (551)
Q Consensus       326 ~~g~~~~A~~~~~~a~~  342 (551)
                      ..|+.++|...|++++.
T Consensus       267 ~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          267 ALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCcHHHHHHHHHH
Confidence            88888888888887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=2.6e-16  Score=143.18  Aligned_cols=165  Identities=11%  Similarity=0.075  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ...++.+|..+...| ++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+
T Consensus       117 ~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          117 EELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            346677999999999 9999999999999999999999999999999999999999999999999997666666666555


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhc
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQAR  293 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~  293 (551)
                      ...      ++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++.. .
T Consensus       196 ~~~------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~  268 (287)
T 3qou_A          196 LXQ------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-L  268 (287)
T ss_dssp             HHH------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-H
T ss_pred             Hhh------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-c
Confidence            555      888889999999999999999999999999999999999999999999999988  8889999999555 9


Q ss_pred             CCHHHHHHHHHHHHh
Q psy12713        294 GNVDEAIKLIEKAIS  308 (551)
Q Consensus       294 ~~~~~A~~~~~~~~~  308 (551)
                      |+.++|...|++++.
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999998874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=1.2e-16  Score=161.00  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL  231 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  231 (551)
                      ++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...      |++++|+
T Consensus         4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~A~   77 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ------QRHAEAA   77 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHH
Confidence            4444444444444444444444444454444445555555555555444444444444444444444      4455555


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---GNVDEAIKLIEKAIS  308 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~~~~  308 (551)
                      ..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .   |++++|...++++++
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHh
Confidence            555555555555555555555555555555555555555555555555555555554433 4   555555555555555


Q ss_pred             cCcCCHHHHH
Q psy12713        309 IDKSCMFAYE  318 (551)
Q Consensus       309 ~~~~~~~~~~  318 (551)
                      .+|.+...+.
T Consensus       157 ~~p~~~~~~~  166 (568)
T 2vsy_A          157 QGVGAVEPFA  166 (568)
T ss_dssp             HTCCCSCHHH
T ss_pred             cCCcccChHH
Confidence            5544443333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=2.5e-17  Score=132.75  Aligned_cols=124  Identities=10%  Similarity=-0.081  Sum_probs=112.9

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      .+++-.+-..+++++..+|+   ++.+++.+|.+++..|++++|+..|++++..+|+++.    +|+.+|.++...| ++
T Consensus        15 l~~~~~~~~~l~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g-~~   86 (151)
T 3gyz_A           15 VIDAINSGATLKDINAIPDD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKE-QF   86 (151)
T ss_dssp             HHHHHHTSCCTGGGCCSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTT-CH
T ss_pred             HHHHHHCCCCHHHHhCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc-cH
Confidence            33444455667888999998   9999999999999999999999999999999999954    6677999999999 99


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      ++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus        87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999999999999999764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=7.1e-17  Score=148.68  Aligned_cols=222  Identities=14%  Similarity=0.141  Sum_probs=134.6

Q ss_pred             HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713         72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF-TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA  150 (551)
Q Consensus        72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  150 (551)
                      +..|++++|..+++++.+..+.   .          ++. .+++++|+..|.++                  |.++...|
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~---~----------~~~~~~~~~~A~~~~~~a------------------~~~~~~~g   50 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKT---S----------FMKWKPDYDSAASEYAKA------------------AVAFKNAK   50 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCC---C----------SSSCSCCHHHHHHHHHHH------------------HHHHHHTT
T ss_pred             CccchHHHHHHHHHHHHHHccc---c----------ccCCCCCHHHHHHHHHHH------------------HHHHHHcC
Confidence            3578888999999888776553   1          011 35666666665543                  44555666


Q ss_pred             CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh
Q psy12713        151 SDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HVARAQRHFVVHKM  218 (551)
Q Consensus       151 ~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~  218 (551)
                       ++++|+..|.+++.+.+..      ..++..+|.+|..+|++++|+.+|++++.+.+..      ..++..+|      
T Consensus        51 -~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg------  123 (307)
T 2ifu_A           51 -QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG------  123 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH------
T ss_pred             -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence             6777777777666654322      3456666677777777777777777766653221      11222233      


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRA  286 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  286 (551)
                      .++.. |++++|+.+|++++...|..      ..++..+|.++...|++++|+..|++++.+.|.+      ...+..+|
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            33333 66666666666666554322      4567778888888888888888888887765443      23566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCcCCHH-----HHHHHHHHHHHhCCHHHHHH
Q psy12713        287 MLMLQARGNVDEAIKLIEKAISIDKSCMF-----AYETLGTIEVQRGRLEEAVK  335 (551)
Q Consensus       287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~  335 (551)
                      .+++. .|++++|+.+|++++ .+|....     ....++..+ ..|+.+.+..
T Consensus       203 ~~~~~-~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          203 LVQLH-RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            77665 788888888888888 7775432     233444444 4566544433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.72  E-value=4.1e-17  Score=143.10  Aligned_cols=206  Identities=10%  Similarity=0.014  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH-
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR-------GQIYCLFGQYEEALRNLDKTIALNPNFHVARA-  209 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-  209 (551)
                      .++..|..+ ..+ ++..|...|.+++..+|+.+++|..+       +.++...++..+++..+++.+.+.|.....++ 
T Consensus         9 ~~~~~~~~~-~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~   86 (282)
T 4f3v_A            9 SLFESAVSM-LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA   86 (282)
T ss_dssp             HHHHHHHHH-TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred             HHHHHHhcc-cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence            445566665 577 99999999999999999999999999       89999999999999999999998776544333 


Q ss_pred             --------------------HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        210 --------------------QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       210 --------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                                          .++.++...      |++++|.+.|..++...|++. ..+.+|.++.+.|++++|+..|+
T Consensus        87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~------g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~  159 (282)
T 4f3v_A           87 IGGLYGDITYPVTSPLAITMGFAACEAAQ------GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK  159 (282)
T ss_dssp             CCTTTCCCEEECSSHHHHHHHHHHHHHHH------TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCcccccccccCCHhHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence                                355556666      999999999999999899888 99999999999999999999999


Q ss_pred             HHHhcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--cC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        270 RSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISID--KS-CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       270 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                      .+....+..  ..+++.+|.++.. .|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+
T Consensus       160 ~a~~~~d~~~~~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          160 SAGKWPDKFLAGAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HhhccCCcccHHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            887653221  3588999999666 999999999999998654  55 56799999999999999999999999999999


Q ss_pred             cCHHHHHHHH
Q psy12713        345 RDEAELSHIY  354 (551)
Q Consensus       345 ~~~~~~~~~~  354 (551)
                      |+ ..+...+
T Consensus       239 P~-~~~~~aL  247 (282)
T 4f3v_A          239 PE-PKVAAAL  247 (282)
T ss_dssp             CC-HHHHHHH
T ss_pred             Cc-HHHHHHH
Confidence            99 7665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.72  E-value=9.7e-17  Score=140.74  Aligned_cols=206  Identities=11%  Similarity=0.077  Sum_probs=146.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHH-------HHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLR-------ATVYIFTSQSTKAIEDLTQLVEDTSVDP  132 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~~~~~  132 (551)
                      .....|..|..+ ..+++..|...|.+++..+|+   ..++|..+       +.++...++..+++..+++.+.+.|..-
T Consensus         6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l   81 (282)
T 4f3v_A            6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL   81 (282)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred             HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence            456678888886 689999999999999999999   99999999       8999999999999999999999877532


Q ss_pred             hh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        133 KI-----------------KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD  195 (551)
Q Consensus       133 ~~-----------------~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  195 (551)
                      ..                 .......++.++...| ++++|...|..++...|++. ..+.+|.++.+.+++++|+..|+
T Consensus        82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g-~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~  159 (282)
T 4f3v_A           82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK  159 (282)
T ss_dssp             CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHT-CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hhhhccCCcccccccccCCHhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence            11                 1234555788888888 99999999988888888777 88888889999999999998888


Q ss_pred             HHHhcCCCC--HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        196 KTIALNPNF--HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--SN-VVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       196 ~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      .+....+..  ..+++.+|.++..+      |++++|+..|++++...  |. .+++++.+|.++..+|+.++|...|++
T Consensus       160 ~a~~~~d~~~~~~a~~~LG~al~~L------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~  233 (282)
T 4f3v_A          160 SAGKWPDKFLAGAAGVAHGVAAANL------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW  233 (282)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhhccCCcccHHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            776543211  22444555444444      55555555555554322  32 334555555555555555555555555


Q ss_pred             HHhcCCC
Q psy12713        271 SIRVDPE  277 (551)
Q Consensus       271 ~~~~~~~  277 (551)
                      ++..+|+
T Consensus       234 a~a~~P~  240 (282)
T 4f3v_A          234 LQTTHPE  240 (282)
T ss_dssp             HHHHSCC
T ss_pred             HHhcCCc
Confidence            5555555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.71  E-value=2.8e-16  Score=158.20  Aligned_cols=162  Identities=10%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      |++++|+..++++++.+|++    ..++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus         3 g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ------------------CC----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34444444444444444444    223333444444444 4444444444444444444444444444444444444444


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---cCHHHHHHHH
Q psy12713        192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDFDGAEEYF  268 (551)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~  268 (551)
                      ..++++++.+|++..++..+|.++...      |++++|+..++++++.+|++..++..+|.++...   |++++|+..+
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~  151 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV  151 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            444444444444444444444444444      4455555555555555555555555555555555   5555555555


Q ss_pred             HHHHhcCCCCHHHHHH
Q psy12713        269 NRSIRVDPENASLYVH  284 (551)
Q Consensus       269 ~~~~~~~~~~~~~~~~  284 (551)
                      +++++.+|++...+..
T Consensus       152 ~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          152 RAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             HHHHHHTCCCSCHHHH
T ss_pred             HHHHhcCCcccChHHH
Confidence            5555555554444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=1.1e-16  Score=147.35  Aligned_cols=201  Identities=14%  Similarity=0.144  Sum_probs=167.1

Q ss_pred             HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713        110 FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH-AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE  188 (551)
Q Consensus       110 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  188 (551)
                      ..|++++|..+++++.+..+..              ++. .+ +++.|+..|.++              |.+|...|+++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~--------------~~~~~~-~~~~A~~~~~~a--------------~~~~~~~g~~~   53 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS--------------FMKWKP-DYDSAASEYAKA--------------AVAFKNAKQLE   53 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC--------------SSSCSC-CHHHHHHHHHHH--------------HHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc--------------ccCCCC-CHHHHHHHHHHH--------------HHHHHHcCCHH
Confidence            4578889999999988766532              011 46 999999998876              67888999999


Q ss_pred             HHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Q psy12713        189 EALRNLDKTIALNPNF------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLV  256 (551)
Q Consensus       189 ~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~  256 (551)
                      +|+..|.+++.+.+..      ...+..+|.++...      |++++|+.+|++++.+.+.      ...++..+|.+|.
T Consensus        54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~------g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  127 (307)
T 2ifu_A           54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL------QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME  127 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999886532      34667777777666      9999999999999987532      2467889999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIE  324 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~  324 (551)
                      . |++++|+.+|++++.+.|..      ..++.++|.++.. .|++++|+.+|++++...|.+      ..++..+|.++
T Consensus       128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~  205 (307)
T 2ifu_A          128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ  205 (307)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence            9 99999999999999987643      5678899999777 999999999999999986654      34788899999


Q ss_pred             HHhCCHHHHHHHHHHhcccccCHH
Q psy12713        325 VQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       325 ~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ...|++++|+.+|++++ +.|+..
T Consensus       206 ~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          206 LHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHcCCHHHHHHHHHHHh-CCCCCC
Confidence            99999999999999999 988754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.69  E-value=1.2e-16  Score=129.32  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=109.0

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      ..+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++.. .|++++|+..|++++..+|
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence            467788888999999999999999999999999999999999999999999999999777 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      +++.+++.+|.++...|++++|+..|++++++.|+++..
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            999999999999999999999999999999998886654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.69  E-value=5.1e-15  Score=131.60  Aligned_cols=259  Identities=12%  Similarity=0.096  Sum_probs=197.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++.+| ..+..|-.|+|..++.-..   +..|.+  .....+.+.+++..+|++...         .. ..+.  ..+.
T Consensus        13 ~~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~--~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~--~~a~   74 (310)
T 3mv2_B           13 DPMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVT--DNTLLFYKAKTLLALGQYQSQ---------DP-TSKL--GKVL   74 (310)
T ss_dssp             --CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCC--CHHHHHHHHHHHHHTTCCCCC---------CS-SSTT--HHHH
T ss_pred             CcHHHH-HHHHHHHhhHHHHHHHHHH---hcCccc--hHHHHHHHHHHHHHcCCCccC---------CC-CCHH--HHHH
Confidence            345555 4667788999999998443   333432  234667778889999998752         11 1222  1122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHFVVHK  217 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~  217 (551)
                      ..++..+  .+ +   |+..+++.+...+.....+..+|.++...|++++|++++.+.+..+|  .+..+....+.++..
T Consensus        75 ~~la~~~--~~-~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~  148 (310)
T 3mv2_B           75 DLYVQFL--DT-K---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL  148 (310)
T ss_dssp             HHHHHHH--TT-T---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--cc-c---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence            2233332  34 4   88999998887666677788999999999999999999999999887  788888889988888


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy12713        218 MIVPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPE--NASLYVHRAM  287 (551)
Q Consensus       218 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~  287 (551)
                      .      |+.+.|.+.++++.+.+|+      .......-|++.+..|  ++.+|...|+++.+..|+  .+..+++   
T Consensus       149 ~------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---  219 (310)
T 3mv2_B          149 N------NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---  219 (310)
T ss_dssp             T------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred             C------CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence            8      9999999999999999983      2333344455566666  999999999999988887  3334444   


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc----------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        288 LMLQARGNVDEAIKLIEKAISI----------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       288 ~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      ++++ +|++++|...++.+++.          +|+++.++.+++.+....|+  +|.++++++.+..|+++.+...-
T Consensus       220 ~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          220 LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence            6666 99999999999988776          48899999999999999998  89999999999999998765443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.69  E-value=1.5e-13  Score=137.90  Aligned_cols=403  Identities=9%  Similarity=0.008  Sum_probs=252.2

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC---H
Q psy12713         77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD---F  153 (551)
Q Consensus        77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~  153 (551)
                      ..+-+..|++.+..+|.   +...|..++......+.++.+...|++++...|.....    |...+......+ +   +
T Consensus        48 ~~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~l----W~~Yi~~E~~~~-~~~~~  119 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANI----WCMRLSLEFDKM-EELDA  119 (679)
T ss_dssp             CSCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTC---CCCH
T ss_pred             CHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHhhC-CcchH
Confidence            44567788999999998   99999999999999999999999999999999998554    444777777888 8   9


Q ss_pred             HHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCH--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhh
Q psy12713        154 TKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQY--------EEALRNLDKTIAL----NPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~  219 (551)
                      +.+...|++++...|  .+++.|..........++.        +.....|++++..    ++.....|...........
T Consensus       120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~  199 (679)
T 4e6h_A          120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK  199 (679)
T ss_dssp             HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence            999999999999984  6788888887766666553        3344778887753    5666666654432221100


Q ss_pred             ---cCCChhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH-------------HhccCHHHHHHHHHHH------Hhc-C
Q psy12713        220 ---VPGDRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVL-------------VDQEDFDGAEEYFNRS------IRV-D  275 (551)
Q Consensus       220 ---~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~-------------~~~~~~~~A~~~~~~~------~~~-~  275 (551)
                         .....++.+.+...|++++....... ..|......-             ....+|+.|...+...      +.. .
T Consensus       200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~  279 (679)
T 4e6h_A          200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL  279 (679)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence               00123567889999999997532222 2332221111             1123445555555442      111 1


Q ss_pred             CCC-----------------HHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713        276 PEN-----------------ASLYVHRAMLMLQARGN--------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL  330 (551)
Q Consensus       276 ~~~-----------------~~~~~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  330 (551)
                      |..                 .........+-+.+...        .+.....|++++...|.++..|+..+..+...|+.
T Consensus       280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~  359 (679)
T 4e6h_A          280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD  359 (679)
T ss_dssp             CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC
T ss_pred             ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH
Confidence            111                 11222223333442221        34567899999999999999999999999999999


Q ss_pred             HHHH-HHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713        331 EEAV-KCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG  409 (551)
Q Consensus       331 ~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  409 (551)
                      ++|. ..|++++...|.+..++..++............+.+      .........   ...+.+...            
T Consensus       360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i------yek~l~~l~---~~~~~~~~~------------  418 (679)
T 4e6h_A          360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT------ILSCIDRIH---LDLAALMED------------  418 (679)
T ss_dssp             TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH------HHHHHHHHH---HHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH------HHHHHHHHH---HHhhhhhhc------------
Confidence            9997 999999999999888776665543222111111110      000000000   000000000            


Q ss_pred             CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhcc-CCCchHHHh
Q psy12713        410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKV-DPNVADSYY  487 (551)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~-~p~~~~~~~  487 (551)
                                               .|...............++..... ....|..+.|...|.+|++. .+....+|.
T Consensus       419 -------------------------~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          419 -------------------------DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             -------------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             -------------------------cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence                                     000000000000001111111111 23357899999999999988 445577888


Q ss_pred             hhhhHHHHhcC-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhh
Q psy12713        488 QRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAE  533 (551)
Q Consensus       488 ~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  533 (551)
                      ..|.+....|+ ++.|...|+++++..|+++..+...+......|+.
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~  520 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE  520 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence            88887777654 99999999999999999999887777766665544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.69  E-value=3.7e-18  Score=158.91  Aligned_cols=203  Identities=15%  Similarity=0.131  Sum_probs=162.1

Q ss_pred             HhCCchHHHHHHHH----HhhcCCCCchhHHHHHHHHHHHHH------------HhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713        110 FTSQSTKAIEDLTQ----LVEDTSVDPKIKVNAHIKRAVVHL------------HAASDFTKAFADLDEAEKVDPNVADS  173 (551)
Q Consensus       110 ~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~~  173 (551)
                      ..+.+++|+..+..    ++.+.|..      ++...|....            .++ ++++|+..+++++...|..+.+
T Consensus        77 ~~~~~e~al~~~~~Ge~~~l~i~p~~------ayg~~g~~~~~i~~~~~l~f~~~L~-~~~~A~~~~~~a~~~~p~~a~~  149 (336)
T 1p5q_A           77 LPYGLERAIQRMEKGEHSIVYLKPSY------AFGSVGKEKFQIPPNAELKYELHLK-SFEKAKESWEMNSEEKLEQSTI  149 (336)
T ss_dssp             CCHHHHHHHTTCCTTCEEEEEECTTT------TTTTTCBGGGTBCSSCCEEEEEEEE-EEECCCCGGGCCHHHHHHHHHH
T ss_pred             cchHHHHHHhcCCCCCeEEEEECCcc------ccCcCCCCccCCCCCCeEEEEEEEe-ecccccchhcCCHHHHHHHHHH
Confidence            34567788888887    77777764      4444555442            456 7778888888888888888888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ  253 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  253 (551)
                      +..+|.++...|++++|+..|++++.+.|.+...              .  .         .......|....++.++|.
T Consensus       150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~--~---------~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------S--N---------EEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------C--S---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------C--h---------HHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888875320              0  0         0111222334678999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                      ++...|++++|+..|+++++++|+++.+++.+|.++.. .|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877 99999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhccccc
Q psy12713        334 -VKCFNKALPLAR  345 (551)
Q Consensus       334 -~~~~~~a~~~~~  345 (551)
                       ...|++++...+
T Consensus       284 ~~~~~~~~~~~~~  296 (336)
T 1p5q_A          284 EKKLYANMFERLA  296 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence             567777776543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.68  E-value=1.1e-15  Score=138.34  Aligned_cols=196  Identities=14%  Similarity=0.153  Sum_probs=146.4

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713        242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  321 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  321 (551)
                      |.++..+..+|..+...|++++|+..|++++..+|+++.++.++|.++.. .|++++|+..++++++.+|++..+++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999777 99999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhcccccCHHH-----HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhh
Q psy12713        322 TIEVQRGRLEEAVKCFNKALPLARDEAE-----LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE  396 (551)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  396 (551)
                      .++...|++++|+..|+++++++|++..     ++..+.....                             ..+.....
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~  130 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK-----------------------------KRWNSIEE  130 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHH-----------------------------HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Confidence            9999999999999999999999886531     1111110000                             00000000


Q ss_pred             chhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhh
Q psy12713        397 NNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAE  476 (551)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  476 (551)
                                                          ...+.+...           ....+. +..|++++|++.+++++
T Consensus       131 ------------------------------------~~~~~~~~i-----------~~~l~~-l~~~~~~~A~~~~~~al  162 (281)
T 2c2l_A          131 ------------------------------------RRIHQESEL-----------HSYLTR-LIAAERERELEECQRNH  162 (281)
T ss_dssp             ------------------------------------TCCCCCCHH-----------HHHHHH-HHHHHHHHHHTTTSGGG
T ss_pred             ------------------------------------HHHhhhHHH-----------HHHHHH-HHHHHHHHHHHHHHhhh
Confidence                                                000111100           000111 12478999999999999


Q ss_pred             ccCCCchHHHhhhhhHHHHh-cCHHHHHHHHHHHhhcCCc
Q psy12713        477 KVDPNVADSYYQRGQIYCLF-GQYEEALRNLDKTIALNPN  515 (551)
Q Consensus       477 ~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~  515 (551)
                      +.+|++......++.++... +.+++|.+.|.++.+..+.
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~  202 (281)
T 2c2l_A          163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK  202 (281)
T ss_dssp             TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence            99998888888888888776 7788999999988875443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.68  E-value=2.2e-16  Score=143.01  Aligned_cols=196  Identities=12%  Similarity=0.074  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+..+..+|..++..|++++|+..|++++..+|+++    .++..+|.++...| ++++|+..++++++.+|+++.+++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            455666666666666666666666666666666652    34445666666666 6666666666666666666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +|.++...|++++|+..|+++++++|++...+....                                   +     ...
T Consensus        78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-----------------------------------~-----~~~  117 (281)
T 2c2l_A           78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-----------------------------------P-----SAL  117 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH-----------------------------------H-----HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH-----------------------------------H-----HHH
Confidence            666666666666666666666666554321110000                                   0     000


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-CCHHHHHH
Q psy12713        257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR-GRLEEAVK  335 (551)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~  335 (551)
                      .   ..++...........|.++.+...++..  . .|++++|++.++++++.+|++......++.++... +.+++|..
T Consensus       118 ~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~  191 (281)
T 2c2l_A          118 R---IAKKKRWNSIEERRIHQESELHSYLTRL--I-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE  191 (281)
T ss_dssp             H---HHHHHHHHHHHHTCCCCCCHHHHHHHHH--H-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHhhhHHHHHHHHHH--H-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            0   0011111112223344445554445443  1 46666666666666666666665555666555554 55666777


Q ss_pred             HHHHhccc
Q psy12713        336 CFNKALPL  343 (551)
Q Consensus       336 ~~~~a~~~  343 (551)
                      .|.++.+.
T Consensus       192 ~f~~a~~~  199 (281)
T 2c2l_A          192 LFSQVDEK  199 (281)
T ss_dssp             HHHHSSCT
T ss_pred             HHHhhhcc
Confidence            77766653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=4.1e-15  Score=128.55  Aligned_cols=179  Identities=17%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC----CHHHHH
Q psy12713        116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG----QYEEAL  191 (551)
Q Consensus       116 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~  191 (551)
                      +|+..|+++.+.  .+    ..+++.+|.++...+ ++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+
T Consensus         4 eA~~~~~~aa~~--g~----~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GD----RRAQYYLADTWVSSG-DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             CTTHHHHHHHHT--TC----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             hHHHHHHHHHHC--CC----HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            345555555543  22    234444555555555 556666555555543  345555555555555 4    555555


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHh----ccCHHHHH
Q psy12713        192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVD----QEDFDGAE  265 (551)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~----~~~~~~A~  265 (551)
                      .+|+++.+  +.++.++..+|.++...  ..-.+++++|+.+|+++.+..|  ..+.+++.+|.+|..    .+++++|+
T Consensus        74 ~~~~~A~~--~g~~~a~~~Lg~~y~~g--~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  149 (212)
T 3rjv_A           74 QLAEKAVE--AGSKSGEIVLARVLVNR--QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS  149 (212)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHTCG--GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHcC--CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            55555543  34455555555443321  0012455555555555555544  235555555555555    55556666


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhc
Q psy12713        266 EYFNRSIRVDPENASLYVHRAMLMLQARG-----NVDEAIKLIEKAISI  309 (551)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~~~~~  309 (551)
                      .+|+++++. |.++.+++++|.+|....|     ++++|+.+|+++.+.
T Consensus       150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            666665555 4444555555555443222     555566666555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.9e-16  Score=155.46  Aligned_cols=194  Identities=13%  Similarity=0.127  Sum_probs=174.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIALNPNFHVARAQRHFVV  215 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  215 (551)
                      ....|...++|+..+++++..+|++..+|..++.++...|+          +++++..++++++.+|++..+|..+++++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455245678999999999999999999999999999998          99999999999999999999999999887


Q ss_pred             HHhhcCCChh--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        216 HKMIVPGDRE--RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA  292 (551)
Q Consensus       216 ~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  292 (551)
                      ...      +  ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++.. 
T Consensus       118 ~~l------~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~-  190 (567)
T 1dce_A          118 SRL------PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-  190 (567)
T ss_dssp             HTC------SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH-
T ss_pred             HHc------ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh-
Confidence            766      7  7799999999999999999999999999999999 89999999999999999999999999998655 


Q ss_pred             c--------------CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHhcccccC
Q psy12713        293 R--------------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE------------AVKCFNKALPLARD  346 (551)
Q Consensus       293 ~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~a~~~~~~  346 (551)
                      .              +.++++++++.+++..+|++..+|+.++.++...+++++            |+..|.+++.++|.
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence            3              568999999999999999999999999999999998766            66668888887775

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=2e-17  Score=153.96  Aligned_cols=185  Identities=12%  Similarity=0.021  Sum_probs=139.4

Q ss_pred             HhhhcHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHH------------HhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713         72 FEHEDYLTAIRHCTE----EIESTSSNHTKALARLLRATVYI------------FTSQSTKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        72 ~~~g~~~~A~~~~~~----~l~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      ...+.+++|+..+..    ++...|.   .  ++..+|....            .++++++|+..+++++...|.+    
T Consensus        76 ~~~~~~e~al~~~~~Ge~~~l~i~p~---~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~----  146 (336)
T 1p5q_A           76 DLPYGLERAIQRMEKGEHSIVYLKPS---Y--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ----  146 (336)
T ss_dssp             TCCHHHHHHHTTCCTTCEEEEEECTT---T--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH----
T ss_pred             ccchHHHHHHhcCCCCCeEEEEECCc---c--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH----
Confidence            345688999999988    8888886   3  4555554432            4567788888888887776654    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---------------ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      ..++..+|.++...| ++++|+..|++++...|.+               ..++.++|.++..+|++++|+..|++++++
T Consensus       147 a~~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          147 STIVKERGTVYFKEG-KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            557788999999999 9999999999999999998               477777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH-HHHHHHHH
Q psy12713        201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA-EEYFNRSI  272 (551)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~  272 (551)
                      +|++..+++.+|.++...      |++++|+..|+++++.+|++..++..++.++...|++++| ...|++++
T Consensus       226 ~p~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777666666      7777777777777777777777777777777777777666 33444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.66  E-value=5.6e-16  Score=124.72  Aligned_cols=121  Identities=14%  Similarity=0.095  Sum_probs=106.6

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                      ..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+.+|++++..+|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence            456777888888899999999999999999999999999999999999999999999777 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      +++.+++.+|.++...|++++|+..|++++.+.|+++.....
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            999999999999999999999999999999999877654433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=5.5e-15  Score=127.79  Aligned_cols=179  Identities=15%  Similarity=0.066  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh----HHHH
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE----RVEQ  229 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  229 (551)
                      .+|+..|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.++..+|.++      .. +    ++++
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y------~~-~g~~~~~~~   71 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLK------IR-NPQQADYPQ   71 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHT------TS-STTSCCHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH------Hc-CCCCCCHHH
Confidence            4578889998875  78999999999999999999999999999875  6788999998543      33 4    8999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh---cCCHHHHH
Q psy12713        230 SLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQA---RGNVDEAI  300 (551)
Q Consensus       230 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~~~~~A~  300 (551)
                      |+.+|+++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .++.+++.+|.+|...   .+++++|+
T Consensus        72 A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  149 (212)
T 3rjv_A           72 ARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS  149 (212)
T ss_dssp             HHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred             HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            9999999965  5789999999999998    8999999999999999988  3589999999996652   46899999


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHhcccccC
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQR-G-----RLEEAVKCFNKALPLARD  346 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~~~~  346 (551)
                      .+|+++++. |.++.+++.+|.+|... |     ++++|+.+|+++.+....
T Consensus       150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            999999998 67788999999999874 3     899999999999987543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.66  E-value=7.4e-16  Score=124.58  Aligned_cols=121  Identities=12%  Similarity=-0.037  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713         79 TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA  158 (551)
Q Consensus        79 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~  158 (551)
                      .+-..|++++..+|.   +..+++.+|.++...|++++|+..|++++..+|.++    .+++.+|.++...| ++++|+.
T Consensus         5 ~~~~~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g-~~~~A~~   76 (148)
T 2vgx_A            5 SGGGTIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMG-QYDLAIH   76 (148)
T ss_dssp             -CCCSHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHH
T ss_pred             chhhhHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHh-hHHHHHH
Confidence            334567888999998   899999999999999999999999999999999984    45667999999999 9999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      .|++++.++|+++.+++.+|.++...|++++|+..|++++++.|+++..
T Consensus        77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            9999999999999999999999999999999999999999998887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=2.1e-14  Score=114.42  Aligned_cols=63  Identities=25%  Similarity=0.489  Sum_probs=25.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      +|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.
T Consensus         7 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   69 (136)
T 2fo7_A            7 LGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA   69 (136)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence            344444444 444444444444444444444444444444444444444444444333333333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=1.9e-14  Score=114.68  Aligned_cols=133  Identities=23%  Similarity=0.422  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713        173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA  252 (551)
Q Consensus       173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  252 (551)
                      +++.+|.++...|++++|+..++++++..|.+...+..++.++...      |++++|+..+++++...|.++.++..+|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~   76 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLG   76 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh------cCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4555666666666666666666666666666666666666555555      6666666666666666666666666666


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713        253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  312 (551)
                      .++...|++++|+..+++++...|.++.++..+|.++.. .|++++|...+++++..+|+
T Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCC
Confidence            666666666666666666666666666666666666544 66666666666666655554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=3e-15  Score=125.71  Aligned_cols=135  Identities=16%  Similarity=0.274  Sum_probs=120.3

Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCCH--
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-MLQARGNV--  296 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~--  296 (551)
                      .+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ ++. .|++  
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~   97 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMT   97 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcch
Confidence            345669999999999999999999999999999999999999999999999999999999999999999 556 8998  


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      ++|+..++++++.+|+++.++..+|.++...|++++|+..|++++...|++........
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            99999999999999999999999999999999999999999999999998866544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=8.8e-16  Score=152.04  Aligned_cols=202  Identities=13%  Similarity=0.151  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED----------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--  294 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  294 (551)
                      .++|+..+.+++..+|++..+|+..+.++...|+          +++++..++++++.+|.+..+|..++.++.. .|  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccc
Confidence            3566777777777777777777777777777776          7888888888888888888888888887444 77  


Q ss_pred             CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccc
Q psy12713        295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIK  373 (551)
Q Consensus       295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (551)
                      ++++++.+++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+..-               
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll---------------  188 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL---------------  188 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH---------------
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH---------------
Confidence            6688888888888888888888888888888888 788888888888888888877766554220               


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch
Q psy12713        374 KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE  453 (551)
Q Consensus       374 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (551)
                                        ..+..                                   .... +.          .+   
T Consensus       189 ------------------~~l~~-----------------------------------~~~~-~~----------~~---  201 (567)
T 1dce_A          189 ------------------PQLHP-----------------------------------QPDS-GP----------QG---  201 (567)
T ss_dssp             ------------------HHHSC-----------------------------------CCCS-SS----------CC---
T ss_pred             ------------------Hhhcc-----------------------------------cccc-cc----------cc---
Confidence                              00000                                   0000 00          00   


Q ss_pred             hhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHH------------HHHHHHHHhhcCCch
Q psy12713        454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE------------ALRNLDKTIALNPNF  516 (551)
Q Consensus       454 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~------------A~~~~~~al~~~p~~  516 (551)
                           -...+.+++|++.+.+++..+|++..+|+.++.++...+++++            |+.+|.+++.++|..
T Consensus       202 -----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          202 -----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             -----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             -----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence                 0011468999999999999999999999999999999999877            777899999998874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=3.8e-15  Score=119.78  Aligned_cols=120  Identities=9%  Similarity=-0.035  Sum_probs=101.5

Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713         82 RHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD  161 (551)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~  161 (551)
                      ..|++++..+|+   +..+++.+|.+++..|++++|+..|++++..+|+++    .+++.+|.++...| ++++|+..|+
T Consensus         5 ~~l~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g-~~~~A~~~~~   76 (142)
T 2xcb_A            5 GTLAMLRGLSED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLG-LYEQALQSYS   76 (142)
T ss_dssp             ----CCTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             hhHHHHHcCCHH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHh-hHHHHHHHHH
Confidence            467778888887   888999999999999999999999999999999884    45666999999999 9999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA  209 (551)
Q Consensus       162 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  209 (551)
                      +++..+|+++.+++.+|.++...|++++|+..|++++.+.|+++....
T Consensus        77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            999999999999999999999999999999999999998887765443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.1e-14  Score=114.40  Aligned_cols=114  Identities=23%  Similarity=0.262  Sum_probs=103.0

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713        242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  321 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  321 (551)
                      |..+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.+++. .|++++|+..++++++.+|+++.++..+|
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999877 99999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhcccc------cCHHHHHHHHhH
Q psy12713        322 TIEVQRGRLEEAVKCFNKALPLA------RDEAELSHIYSL  356 (551)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~~  356 (551)
                      .++...|++++|+..|+++++++      |++..+...+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            99999999999999999999999      888776655543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.62  E-value=1.7e-14  Score=125.22  Aligned_cols=135  Identities=14%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....++..|..++..|++++|+..|++++  .|    ++.+++.+|.++...|++++|+..|++++..+|++    ..++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~   74 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAY   74 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHH
Confidence            34567888999999999999999999885  33    46789999999999999999999999999998887    4466


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----------------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                      +.+|.++...| ++++|+..|++++...|.+.                .+++.+|.++...|++++|+..+++++++.|+
T Consensus        75 ~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           75 FQRGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcc-cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            77999999999 99999999999999888766                88999999999999999999999999999887


Q ss_pred             CH
Q psy12713        204 FH  205 (551)
Q Consensus       204 ~~  205 (551)
                      +.
T Consensus       154 ~~  155 (213)
T 1hh8_A          154 PR  155 (213)
T ss_dssp             GG
T ss_pred             cc
Confidence            53

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.61  E-value=5.5e-14  Score=124.99  Aligned_cols=188  Identities=11%  Similarity=0.049  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      |+..+++.+...+.....+..+|.++...|++++|+..+.+.+..+|  ++.+++...+.+++. .|+.+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            56666666665545555667888888888888888888888887776  667777788888777 888888888888887


Q ss_pred             hcCcC------CHHHHHHHHHHHHHhC--CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713        308 SIDKS------CMFAYETLGTIEVQRG--RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR  379 (551)
Q Consensus       308 ~~~~~------~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (551)
                      +.+|+      .......-|++....|  ++.+|...|+++.+..|+.......+                         
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl-------------------------  218 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL-------------------------  218 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence            77772      2333333455566666  88888888888877777621110000                         


Q ss_pred             hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713        380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK  459 (551)
Q Consensus       380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (551)
                                                                                                +   ++
T Consensus       219 --------------------------------------------------------------------------n---~~  221 (310)
T 3mv2_B          219 --------------------------------------------------------------------------N---LH  221 (310)
T ss_dssp             --------------------------------------------------------------------------H---HH
T ss_pred             --------------------------------------------------------------------------H---HH
Confidence                                                                                      0   24


Q ss_pred             hhhcChhHHHHhhHHhhcc----------CCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHH
Q psy12713        460 HAASDFTKAFADLDEAEKV----------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  522 (551)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  522 (551)
                      ..+|++++|...++.+++.          +|++++++.+++.+...+|+  +|.++++++.+.+|+++.+...
T Consensus       222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence            4457888888888877765          48899999999999999998  8999999999999999876544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=5.6e-14  Score=121.95  Aligned_cols=130  Identities=12%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ  253 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  253 (551)
                      ++.+|.++...|++++|+..|++++  .| +..++..+|.++...      |++++|+..+++++..+|.++.++..+|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL------KNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4445555555555555555555553  11 334444444444444      44555555555555555555555555555


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENA----------------SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      ++...|++++|+..|+++++..|.+.                .+++.+|.++.. .|++++|+..++++++..|++
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence            55555555555555555555544443                455555555444 555555555555555555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.59  E-value=8.2e-14  Score=127.37  Aligned_cols=141  Identities=11%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKI  134 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~  134 (551)
                      ....+...+..++..|+|++|+..+.+++...+..   ......++.+|.++...|++++|+..+++++...+..  +..
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            34566778888888888888888888888877653   1233456678888888888888888888888765433  222


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713        135 KVNAHIKRAVVHLHAASDFTKAFADLDEAE---KVDPNVA----DSYYQRGQIYCLFGQYEEALRNLDKTIALN  201 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  201 (551)
                      ...++..+|.+|...| ++++|+.+|++++   ...|++.    .+++++|.+|..+|++++|+.++++++.+.
T Consensus       154 ~~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          154 NLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3557788888888888 8888888888888   4455532    578888888888888888888888888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=5.9e-14  Score=128.30  Aligned_cols=172  Identities=11%  Similarity=0.100  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------H
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------V  245 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~  245 (551)
                      ..+...+..+...|++++|+..+.++++..+............+.....+...|++++|+..+++++...+..      .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3444556666677777777777777776665543321111111111123333477777777777777654332      5


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC------
Q psy12713        246 EACTLFAQVLVDQEDFDGAEEYFNRSI---RVDPENA----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS------  312 (551)
Q Consensus       246 ~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~------  312 (551)
                      .++..+|.+|...|++++|+.+|++++   +..|++.    .++.++|.++.. .|++++|+.+++++++..+.      
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            688999999999999999999999999   4456543    588999999887 99999999999999987543      


Q ss_pred             CHHHHHHHHHHHHHhCCHHHH-HHHHHHhcccc
Q psy12713        313 CMFAYETLGTIEVQRGRLEEA-VKCFNKALPLA  344 (551)
Q Consensus       313 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~  344 (551)
                      ...++..+|.++...|++++| ..++++++.+.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            267899999999999999999 88899998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.4e-14  Score=110.48  Aligned_cols=111  Identities=22%  Similarity=0.275  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+..+..+|..++..|++++|+..|++++..+|+++    .++..+|.++...| ++++|+..+++++..+|+++.+++.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            455666666666666666666666666666666653    34445666666666 6666666666666666666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcC------CCCHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALN------PNFHVARAQRH  212 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~  212 (551)
                      +|.++...|++++|+..|+++++++      |.+..++..+.
T Consensus        78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~  119 (126)
T 3upv_A           78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  119 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence            6666666666666666666666666      55555444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.58  E-value=3.3e-15  Score=127.98  Aligned_cols=175  Identities=10%  Similarity=0.036  Sum_probs=119.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      .+.+....| +++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++.....      ..   
T Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------~~---   79 (198)
T 2fbn_A           10 HSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ------IL---   79 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH------HH---
T ss_pred             hhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh------hH---
Confidence            455566666 77777777766655556667778888888888888888888888888877765421100      00   


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK  301 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  301 (551)
                         ....       ..+     ...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+.
T Consensus        80 ---~~~~-------~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~  143 (198)
T 2fbn_A           80 ---LDKK-------KNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKE  143 (198)
T ss_dssp             ---HHHH-------HHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             ---HHHH-------HHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cccHHHHHH
Confidence               0100       000     146788899999999999999999999999999999999999999777 899999999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcc
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALP  342 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~  342 (551)
                      .|+++++.+|++..++..++.++...++..++. ..+.+.+.
T Consensus       144 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999888888777 44555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.57  E-value=2.5e-14  Score=120.10  Aligned_cols=130  Identities=14%  Similarity=0.166  Sum_probs=98.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhhcCCCh
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV-VHKMIVPGDR  224 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~  224 (551)
                      +...| ++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++...+..+|.+ +...      
T Consensus        20 ~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~------   92 (177)
T 2e2e_A           20 FASQQ-NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA------   92 (177)
T ss_dssp             CC------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------
T ss_pred             hhhcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc------
Confidence            34456 788888888888888888888888888888888888888888888888888888777777777 5555      


Q ss_pred             hHH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        225 ERV--EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY  282 (551)
Q Consensus       225 ~~~--~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  282 (551)
                      |++  ++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++...
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            776  7888888888888888888888888888888888888888888888877765443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.57  E-value=1.3e-13  Score=125.96  Aligned_cols=180  Identities=11%  Similarity=0.070  Sum_probs=131.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch--h
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTK---ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK--I  134 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~  134 (551)
                      ....+...+..++..|+|++|+..+++++...+..+..   ...+..+|.++...|++++|+.++++++...+....  .
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  153 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            34556667889999999999999999999877653221   234446888888889999999999999986544332  2


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      ...++..+|.+|...| ++++|+.+|+++++..       +....+++++|.+|..+|++++|+.++++++++.+...  
T Consensus       154 ~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--  230 (293)
T 3u3w_A          154 NLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--
Confidence            3557888999999999 9999999999999531       22245888999999999999999999999887653320  


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhc
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRV  274 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~  274 (551)
                                                      ..+..+.++..+|.++...|+ +++|+..|++++.+
T Consensus       231 --------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          231 --------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             --------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             --------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence                                            011224556666666666663 46666666666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=2.9e-14  Score=111.82  Aligned_cols=104  Identities=23%  Similarity=0.385  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFA  316 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~  316 (551)
                      ...++..+|..++..|++++|+..|+++++++|+++.++.++|.+++. +|++++|+..++++++++|++       ..+
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            345778899999999999999999999999999999999999999887 999999999999999998876       357


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +..+|.++...|++++|+++|++++...|+..
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence            88999999999999999999999999888743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=9.4e-14  Score=115.11  Aligned_cols=132  Identities=22%  Similarity=0.247  Sum_probs=86.2

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++..|..++..|++++|+..|++++...|.   +..++..+|.++...|++++|+..+++++...|.++    .++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~   84 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGY   84 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHH
Confidence            4556666677777777777777777777776666   666666777777777777777777777776666653    344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHhCCHHHHHHHHHHHHh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR--GQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      +.+|.++...| ++++|+..+++++..+|.+..++..+  +..+...|++++|+..+.++..
T Consensus        85 ~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           85 YRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            55677777777 77777777777777666666665333  3336666666666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.56  E-value=7.4e-14  Score=115.43  Aligned_cols=113  Identities=13%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Q psy12713        241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  320 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  320 (551)
                      .+.++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..++++++.+|+++.+++.+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345577899999999999999999999999999999999999999999887 9999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        321 GTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       321 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      |.++...|++++|+.+|+++++++|++...+...
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            9999999999999999999999999987754333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=2.3e-13  Score=112.72  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+..+..+|.++...|++++|+..|++++...|.+    ..++..+|.++...| ++++|+..+++++..+|.++.++..
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHH
Confidence            34445555555555555555555555555555544    223344555555555 5555555555555555555555555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  208 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  208 (551)
                      +|.++...|++++|+..+++++..+|.+...+
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  118 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDKDAK  118 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            55555555555555555555555555544444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.55  E-value=1.7e-13  Score=125.21  Aligned_cols=179  Identities=11%  Similarity=0.076  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK--VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---  171 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---  171 (551)
                      ....+...+..+...|++++|+..+++++...+..+...  ...+..+|.++...+ ++++|+..+++++...+...   
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHH
Confidence            344455567888999999999999999999877766543  334455889998889 99999999999998654432   


Q ss_pred             ---hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        172 ---DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       172 ---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                         .++..+|.+|...|++++|+.+|+++++.....+                   +              ..+....++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------~--------------~~~~~~~~~  199 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------D--------------NEEFDVKVR  199 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------------C--------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------c--------------chhHHHHHH
Confidence               3689999999999999999999999985321100                   0              011235678


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARG-NVDEAIKLIEKAISID  310 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~  310 (551)
                      .++|.+|...|++++|+.++++++++.+..      +.++..+|.++.. .| ++++|+.++++++.+.
T Consensus       200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999999875433      7789999999877 89 5799999999999764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-13  Score=109.03  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      ....+..++..|..++..|++++|+..|++++...|.   +..++..+|.++...|++++|+..++++++..|.++    
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----   84 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI----   84 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch----
Confidence            3457788888888888888888888888888888887   788888888888888888888888888888888763    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  186 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  186 (551)
                      .++..+|.++...| ++++|+..+++++..+|.+..++..++.++..+|+
T Consensus        85 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           85 KGYTRKAAALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            45666888888888 88888888888888888888888888888877664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.54  E-value=5.6e-14  Score=109.02  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      .++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999777 9999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHhcccccCHHH
Q psy12713        327 RGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .|++++|+..|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999987643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.54  E-value=1.6e-14  Score=123.67  Aligned_cols=142  Identities=20%  Similarity=0.177  Sum_probs=70.2

Q ss_pred             hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchh------------HHHHHH
Q psy12713         73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI------------KVNAHI  140 (551)
Q Consensus        73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~  140 (551)
                      ..|+|+.|...+.......+.   .+..+..+|.+++..|++++|+..|++++...|.++..            ...++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             ------CCCSGGGCCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            344444444444433333333   55555566666666666666666666666655554310            013444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      .+|.++...| ++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...
T Consensus        93 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           93 NLATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            4555555555 5555555555555555555555555555555555555555555555555555555554444444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=1.4e-13  Score=113.73  Aligned_cols=115  Identities=19%  Similarity=0.189  Sum_probs=88.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ..+..++.+|..++..|+|++|+..|++++..+|.   ++.++..+|.++...|++++|+..|++++.++|++    ..+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~   81 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKA   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHH
Confidence            46677788888888888888888888888888887   77788888888888888888888888888887776    345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      ++.+|.++...| ++++|+..|++++.++|++..++...+...
T Consensus        82 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           82 WSRLGLARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            566888888888 888888888888888887777666555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=2.8e-14  Score=112.83  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC-------c--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS-------N--HTKALARLLRATVYIFTSQSTKAIEDLTQLVED---  127 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  127 (551)
                      .+..++..|..++..|+|++|+..|+++++.+|+       .  +.+..+|.++|.++..+|++++|+..+++++.+   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4566777788888888888888888888887776       1  122335555555555555555555555555554   


Q ss_pred             ----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713        128 ----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV  170 (551)
Q Consensus       128 ----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~  170 (551)
                          +|++...+..+++++|.++..+| ++++|+..|+++++++|++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcCCCc
Confidence                44432222222244444444444 4444444444444444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.53  E-value=1.8e-13  Score=108.57  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+.+++++++.+|.+..++..++.++..
T Consensus        52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            333333333333344444444444433333333344444443333 3444444444444444444333344444443333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.53  E-value=1.1e-13  Score=108.48  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=68.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch---hHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK---IKV  136 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~  136 (551)
                      .+.++..+|..++..|+|++|+..|+++++.+|+   ++.++..+|.++..+|++++|+..++++++++|+++.   ...
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            3455566677777777777777777777777776   6666777777777777777777777777666554332   223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDP  168 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~  168 (551)
                      .++..+|.++...| ++++|+..|++++...|
T Consensus        84 ~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           84 KAMSRAGNAFQKQN-DLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCc
Confidence            45666666666666 66666666666666655

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=5.8e-14  Score=111.06  Aligned_cols=104  Identities=16%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-------NAS-----LYVHRAMLMLQARGNVDEAIKLIEKAISI---  309 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---  309 (551)
                      ...+...|..+...|++++|+..|+++++++|+       +..     +|.++|.++.. +|++++|+..+++++++   
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhc
Confidence            456788899999999999999999999999998       443     99999999776 99999999999999999   


Q ss_pred             ----CcCCHHHH----HHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        310 ----DKSCMFAY----ETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       310 ----~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                          +|++..+|    +++|.++..+|++++|+..|++++++.|++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                99999999    99999999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=3.4e-13  Score=107.63  Aligned_cols=115  Identities=19%  Similarity=0.280  Sum_probs=102.1

Q ss_pred             hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      ..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.+++. .|++++|+..++++++.+|+++.++..
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            4577888999999999999999999999999999999999999999999777 999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhcccccC-----HHHHHHHHh
Q psy12713        320 LGTIEVQRGRLEEAVKCFNKALPLARD-----EAELSHIYS  355 (551)
Q Consensus       320 l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~  355 (551)
                      +|.++...|++++|+..|++++.+.|+     +..+...+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999887     555444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.52  E-value=1.9e-13  Score=108.08  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+.+++
T Consensus        26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~  104 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYK  104 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            4444444444444444454555555555555555555555555555555555555555555555444 555555555555


Q ss_pred             HHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713        305 KAISIDKSCMFAYETLGTIEVQRGR  329 (551)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~~~~~g~  329 (551)
                      ++++..|+++.++..+|.++...|+
T Consensus       105 ~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A          105 KALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCccchHHHHHHHHHHHHHhc
Confidence            5555555555555555555555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=2.6e-14  Score=138.88  Aligned_cols=150  Identities=19%  Similarity=0.256  Sum_probs=121.5

Q ss_pred             hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-----------hhHHHHHHH
Q psy12713         73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-----------KIKVNAHIK  141 (551)
Q Consensus        73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~  141 (551)
                      ..+++++|+..|+.++...|.   .+.++..+|.+++..|++++|+..|++++++.|.++           .....++.+
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            445677788788777777776   888999999999999999999999999999988873           122457778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      +|.++..+| ++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...   
T Consensus       323 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~---  398 (457)
T 1kt0_A          323 LAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA---  398 (457)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH---
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Confidence            888888888 8999999999988888888888888888888888888888888888888888888888888777776   


Q ss_pred             CChhHHHHHHH
Q psy12713        222 GDRERVEQSLK  232 (551)
Q Consensus       222 ~~~~~~~~A~~  232 (551)
                         ++++++..
T Consensus       399 ---~~~~~a~~  406 (457)
T 1kt0_A          399 ---KEHNERDR  406 (457)
T ss_dssp             ---HHHHHHHH
T ss_pred             ---HHHHHHHH
Confidence               77776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.51  E-value=1.1e-13  Score=107.35  Aligned_cols=104  Identities=13%  Similarity=0.020  Sum_probs=84.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....++.+|..++..|++++|+..|+++++.+|+   ++.+++.+|.++...|++++|+..|+++++++|+++    .++
T Consensus        16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~   88 (121)
T 1hxi_A           16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVH   88 (121)
T ss_dssp             GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH
Confidence            3456788899999999999999999999999998   888899999999999999999999999999988874    456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVA  171 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~  171 (551)
                      +.+|.++...| ++++|+..++++++.+|++.
T Consensus        89 ~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           89 AALAVSHTNEH-NANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCC
Confidence            66889999998 89999999999888888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.50  E-value=9.6e-13  Score=103.92  Aligned_cols=114  Identities=11%  Similarity=0.246  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      +..+|.++...| ++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|++...+..+|.++...
T Consensus        15 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           15 LKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence            333444444444 4444444444444444444444444444444444444444444444444444443333333333333


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE  259 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  259 (551)
                            |++++|+..+++++...|+++.++..+|.++...|
T Consensus        94 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           94 ------NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             ------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             ------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence                  33444444444444444433334444444443333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.49  E-value=2.4e-13  Score=112.08  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc------------------CCCchhHHHHHHHHHHHHHHhCCchHHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES------------------TSSNHTKALARLLRATVYIFTSQSTKAIEDL  121 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  121 (551)
                      .+..+...|..++..|+|++|+..|++++..                  +|.   ...++..+|.++..+|++++|+..+
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK---NIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT---HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH---HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            6788899999999999999999999999988                  333   5566666666666666666666666


Q ss_pred             HHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q psy12713        122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-DSYYQRGQIYCL  183 (551)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~  183 (551)
                      ++++.++|++    ..+++.+|.++...| ++++|+..|++++.++|+++ .+...++.+...
T Consensus        87 ~~al~~~p~~----~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           87 SEVLKREETN----EKALFRRAKARIAAW-KLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHSTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcc----hHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            6666666665    335555666666666 66666666666666666665 444445444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=1.9e-12  Score=101.16  Aligned_cols=101  Identities=24%  Similarity=0.425  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+.+++
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  101 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ  101 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444444444333 444444444444


Q ss_pred             HHHhcCcCCHHHHHHHHHHHHH
Q psy12713        305 KAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ++++.+|+++.++..+|.++..
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A          102 KALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHh
Confidence            4444444444444444444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.49  E-value=2.3e-14  Score=139.18  Aligned_cols=168  Identities=15%  Similarity=0.159  Sum_probs=131.8

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      ..+ ++++|+..++.++...|.....+..+|.++...|++++|+..|++++++.|.+....                +..
T Consensus       246 ~l~-~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~----------------~~~  308 (457)
T 1kt0_A          246 TLK-SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS----------------EKE  308 (457)
T ss_dssp             EEE-EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC----------------HHH
T ss_pred             hhh-hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC----------------hHH
Confidence            456 777888888888877888888888888888888888888888888888877653200                111


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI  307 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  307 (551)
                      ..         ...+....++.++|.++...|++++|+..|+++++++|+++.+++.+|.+++. .|++++|+..|++++
T Consensus       309 ~~---------~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          309 SK---------ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVL  378 (457)
T ss_dssp             HH---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HH---------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Confidence            11         11222357889999999999999999999999999999999999999999887 999999999999999


Q ss_pred             hcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHhcc
Q psy12713        308 SIDKSCMFAYETLGTIEVQRGRLEEAVK-CFNKALP  342 (551)
Q Consensus       308 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~  342 (551)
                      +++|++..++..++.++...|++++|.. .+.+++.
T Consensus       379 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988774 4444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=5.8e-13  Score=109.73  Aligned_cols=110  Identities=19%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------------------DPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      ...+...|..++..|++++|+..|.+++..                  +|....++.++|.+++. .|++++|+..++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence            467788899999999999999999999988                  66667899999999887 99999999999999


Q ss_pred             HhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH-HHHHHHh
Q psy12713        307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA-ELSHIYS  355 (551)
Q Consensus       307 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~  355 (551)
                      ++++|+++.+++.+|.++...|++++|+..|++++.++|++. .+...+.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 4444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=1.5e-12  Score=100.71  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  323 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  323 (551)
                      .+..+..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+..++++++..|+++.++..+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            356777888888888888888888888888888888888888888776 8888888888888888888888888888888


Q ss_pred             HHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       324 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      +...|++++|...++++++..|++..++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            88888888888888888888888776655443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.48  E-value=8.7e-13  Score=105.25  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+..++
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~  101 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ  101 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            4444444444444444444444455555555555555555555555555555555555555555444 555555555555


Q ss_pred             HHHhcCcC
Q psy12713        305 KAISIDKS  312 (551)
Q Consensus       305 ~~~~~~~~  312 (551)
                      +++...|+
T Consensus       102 ~a~~~~p~  109 (137)
T 3q49_B          102 RAYSLAKE  109 (137)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHChh
Confidence            55555444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.47  E-value=2.6e-12  Score=100.44  Aligned_cols=113  Identities=24%  Similarity=0.389  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy12713        171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL  250 (551)
Q Consensus       171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  250 (551)
                      ..++..+|.++...|++++|+..+++++...|.+...+..++.++...      |++++|+..+++++...|.++.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            344455555555555555555555555555555555555555444444      55555555555555555555555555


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713        251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM  289 (551)
Q Consensus       251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  289 (551)
                      +|.++...|++++|+..+++++..+|+++.++..++.++
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            555566666666666666666666666555555555553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=1.7e-12  Score=100.38  Aligned_cols=110  Identities=12%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      +..++.+|.++...|++++|+..+++++...|.++    .++..+|.++...| ++++|+..+++++..+|+++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34455555555555555555555555555555442    23344555555555 55555555555555555555555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      |.++...|++++|+..++++++.+|++...+..++
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            55555555555555555555555555555554444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=2e-12  Score=101.89  Aligned_cols=117  Identities=15%  Similarity=0.074  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      .++..|..++..|++++|+..|++++...|+++....+++.+|.++...|++++|+..|++++...|+++.. ..+++.+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA-AGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH-HHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc-HHHHHHH
Confidence            456667777777777777777777777666633333666677777777777777777777777666665331 3345556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      |.++...| ++++|+..+++++...|+++.+......+-
T Consensus        83 a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEG-KNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            77777776 777777777777766666665554444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.45  E-value=5.4e-10  Score=108.99  Aligned_cols=265  Identities=11%  Similarity=0.018  Sum_probs=169.2

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-chHHHHHHHHHhhc---CCCCchh
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ-STKAIEDLTQLVED---TSVDPKI  134 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~  134 (551)
                      +.+...|..+...+-.|+++.+..+|++++...|    +.+.|..........++ .+.....|+.++..   ++.+.. 
T Consensus        12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p----s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~-   86 (493)
T 2uy1_A           12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY----NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG-   86 (493)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH-
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH-
Confidence            4678888999998888999999999999999988    46678777777666663 45677888888875   444433 


Q ss_pred             HHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCChhHH-HHHHHHH-------------HHhCCHHHHHHHHHH
Q psy12713        135 KVNAHIKRAVVHL----HAASDFTKAFADLDEAEKVDPNVADSY-YQRGQIY-------------CLFGQYEEALRNLDK  196 (551)
Q Consensus       135 ~~~~~~~la~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~-------------~~~~~~~~A~~~~~~  196 (551)
                         .|...+..+.    ..+ +.+.+...|++++...+.+..-+ ......-             ...+.+..|...++.
T Consensus        87 ---iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~  162 (493)
T 2uy1_A           87 ---LYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ  162 (493)
T ss_dssp             ---HHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence               3333444432    356 78999999999999643333222 2111111             112234445555555


Q ss_pred             HHhcCCC-CHHHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        197 TIALNPN-FHVARAQRHFVVHKMIV---PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       197 ~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                      +....+. ....|....  .+....   ....+..+.....|++++...|..+..|...+..+...|+.++|...|++++
T Consensus       163 ~~~~~~~~s~~~W~~y~--~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi  240 (493)
T 2uy1_A          163 IQPLIRGWSVKNAARLI--DLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI  240 (493)
T ss_dssp             HHHHHHTCSHHHHHHHH--HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHH--HHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5443222 222332221  111100   0111225667789999999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        273 RVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS----------IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      .. |.+...+...+.. .. .++   ....+.....          ..+....+|...+....+.|+.+.|...|+++
T Consensus       241 ~~-P~~~~l~~~y~~~-~e-~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A  312 (493)
T 2uy1_A          241 EM-SDGMFLSLYYGLV-MD-EEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL  312 (493)
T ss_dssp             HH-CCSSHHHHHHHHH-TT-CTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hC-CCcHHHHHHHHhh-cc-hhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            99 9987776655443 11 221   1111111110          01112456778888887888899999999999

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.9e-12  Score=123.54  Aligned_cols=208  Identities=13%  Similarity=0.070  Sum_probs=165.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--------------HTKALARLLRATVYIFTSQSTKAIEDLTQLV  125 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  125 (551)
                      .|...+..|..+...|+|++|++.|.++++..|..              .....++..+|.+|...|++++|++++.+++
T Consensus         3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999988763              2234578999999999999999999999999


Q ss_pred             hcCCCCchh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        126 EDTSVDPKI--KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       126 ~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      ...+.....  ...+...++.++...| ++++|+..+++++...+      ....++..+|.++...|++++|+..++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q           83 EYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL  161 (434)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            876554332  2234556788888889 99999999999987532      23568889999999999999999999998


Q ss_pred             HhcC------CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHhccCHHHH
Q psy12713        198 IALN------PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNV----VEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       198 l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~la~~~~~~~~~~~A  264 (551)
                      +...      +.....+...+.++...      |++++|...+++++...   +..    ...+...|.++...|++++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          162 LREFKKLDDKPSLVDVHLLESKVYHKL------RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHTTSSCSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            8652      22345667777666666      99999999998888653   222    34667788888888999999


Q ss_pred             HHHHHHHHhc
Q psy12713        265 EEYFNRSIRV  274 (551)
Q Consensus       265 ~~~~~~~~~~  274 (551)
                      ..+|.++++.
T Consensus       236 ~~~~~~a~~~  245 (434)
T 4b4t_Q          236 FSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988888764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.7e-12  Score=103.90  Aligned_cols=115  Identities=22%  Similarity=0.209  Sum_probs=98.7

Q ss_pred             hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713        240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  316 (551)
                      ..|.....+..+|..+...|++++|+..|+++++.+|++   ..++..+|.++.. .|++++|+..++++++.+|+++.+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHH
Confidence            346678888889999999999999999999999988887   7888888988777 899999999999999999988889


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      +..+|.++...|++++|+.+|++++.++|++..++..+.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            999999999999999999999999999888877655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=4.9e-13  Score=102.38  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=95.4

Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHHH
Q psy12713        241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYE  318 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~  318 (551)
                      +|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.. .|++++|+.+++++++..|.  +..++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            577778888899999999999999999999999999999999999999777 89999999999999999999  899999


Q ss_pred             HHHHHHHHh-CCHHHHHHHHHHhcccccCH
Q psy12713        319 TLGTIEVQR-GRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       319 ~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .+|.++... |++++|+.++++++...|++
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999999 99999999999999888864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=3.1e-12  Score=109.88  Aligned_cols=167  Identities=18%  Similarity=0.212  Sum_probs=121.9

Q ss_pred             HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHH
Q psy12713         71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIKVNAHIKRAVVHLH  148 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~  148 (551)
                      ++..|++++|...++.+.. +|.  ....++..+|.++...|++++|+..+++++....  .++.....++..+|.++..
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM   78 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC-ChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            4678999999996655544 442  2789999999999999999999999999998532  2334456788899999999


Q ss_pred             hcCCHHHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713        149 AASDFTKAFADLDEAEKV---DPNV----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP  221 (551)
Q Consensus       149 ~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  221 (551)
                      .| ++++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++.+.+......             
T Consensus        79 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------  144 (203)
T 3gw4_A           79 AG-NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV-------------  144 (203)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------------
T ss_pred             cC-CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH-------------
Confidence            99 999999999999987   4422    45788899999999999999999999886532111000             


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                                           ....++..+|.++...|++++|+..+++++++.
T Consensus       145 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          145 ---------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence                                 002345667777777777777777777777653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.43  E-value=1.9e-12  Score=111.25  Aligned_cols=163  Identities=18%  Similarity=0.208  Sum_probs=113.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER  226 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (551)
                      +..| ++++|...++......+....++..+|.++...|++++|+..+++++.+....                    + 
T Consensus         3 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~-   60 (203)
T 3gw4_A            3 FEAH-DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--------------------G-   60 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------C-
T ss_pred             cccc-cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------------------C-
Confidence            3456 77777775444433223456667777777777777777777777766532211                    0 


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcCCHHHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPEN----ASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~~A  299 (551)
                                   ..+....++..+|.++...|++++|+..+++++..   .+++    ..++..+|.++.. .|++++|
T Consensus        61 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A  126 (203)
T 3gw4_A           61 -------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-FGDLAGA  126 (203)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-HTCHHHH
T ss_pred             -------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-hCCHHHH
Confidence                         11223456788888999999999999999988887   4433    4567888888777 8999999


Q ss_pred             HHHHHHHHhcCcC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        300 IKLIEKAISIDKS--C----MFAYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       300 ~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      +.++++++...+.  +    ..++..+|.++...|++++|..++++++.+..
T Consensus       127 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          127 RQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9999998865332  1    34568999999999999999999999988754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=4.8e-14  Score=137.41  Aligned_cols=138  Identities=21%  Similarity=0.294  Sum_probs=120.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++.+|..++..|++++|+..|+++++.+|.   +..++..+|.++..+|++++|+..++++++.+|++    ..++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~   77 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGY   77 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHH
Confidence            4455667788899999999999999999999998   89999999999999999999999999999999988    4567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHhcCCCCH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI--YCLFGQYEEALRNLD-----------KTIALNPNFH  205 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~~l~~~~~~~  205 (551)
                      +.+|.++..+| ++++|+..++++++.+|++..++..++.+  +...|++++|+..++           +++.+.|+..
T Consensus        78 ~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           78 YRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            77999999999 99999999999999999999999999988  888999999999999           7777777643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=5.5e-12  Score=102.01  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ...+..++..|..++..|++++|+..|++++...|+.+....++..+|.++...|++++|+..+++++...|++    ..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~  100 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VK  100 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HH
Confidence            45788899999999999999999999999999999721127888888999888999999999999988888877    34


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC  182 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  182 (551)
                      +++.+|.++...| ++++|+..+++++..+|++..++..++.+..
T Consensus       101 ~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          101 ALYRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            5666888888888 8999999998888888888888877776643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=6.7e-12  Score=121.86  Aligned_cols=201  Identities=9%  Similarity=0.070  Sum_probs=145.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713        142 RAVVHLHAASDFTKAFADLDEAEKVDPNVA-----------------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  204 (551)
Q Consensus       142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  204 (551)
                      .|..+...| ++++|++.|.++++..|...                 .++..+|.+|...|++++|++.+.+++...+..
T Consensus        10 ~a~~l~~~~-~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~   88 (434)
T 4b4t_Q           10 EARRLVNEK-QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF   88 (434)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            455555555 55555555555555554432                 246778888888888888888888887765554


Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----
Q psy12713        205 HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----  274 (551)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----  274 (551)
                      ...............++...|++++|+..+++++...      +....++..+|.++...|++++|...+++++..    
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~  168 (434)
T 4b4t_Q           89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL  168 (434)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence            3332211111111155666788889998888887653      234678899999999999999999999998765    


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC---C----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713        275 --DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS---C----MFAYETLGTIEVQRGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       275 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  344 (551)
                        .+....++..++.++.. .|++++|...+++++...+.   .    ...+..+|.++...|++++|..+|.+++...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          169 DDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             SCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence              23336688899999887 99999999999999876432   2    3567788999999999999999999998753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.41  E-value=4.3e-13  Score=124.69  Aligned_cols=156  Identities=10%  Similarity=0.153  Sum_probs=75.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..++..|..++..|+|++|+..|++++...|.   +..        +...|++.++...+.             ..++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~--------~~~~~~~~~~~~~l~-------------~~~~  233 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFM--------FQLYGKYQDMALAVK-------------NPCH  233 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHH--------HTCCHHHHHHHHHHH-------------THHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chh--------hhhcccHHHHHHHHH-------------HHHH
Confidence            4566777777777788888888888888877775   331        111222222222110             1255


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      +++|.++...| ++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..   
T Consensus       234 ~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~---  309 (338)
T 2if4_A          234 LNIAACLIKLK-RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE---  309 (338)
T ss_dssp             HHHHHHHHTTT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---
Confidence            66777777777 77777777777777777777777777777777777777777777777777777776666664422   


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVV  245 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~  245 (551)
                        ...+..+++...|.+++...|.++
T Consensus       310 --~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          310 --QEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------------------
T ss_pred             --HHHHHHHHHHHHHHHhhCCCCCCC
Confidence              223666777777777777776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.41  E-value=2.2e-12  Score=98.63  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--c
Q psy12713        167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--V  244 (551)
Q Consensus       167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~  244 (551)
                      +|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...      |++++|+..++++++..|.  +
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~~~~~~   75 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL------ERYEEAVDCYNYVINVIEDEYN   75 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSCCTTC
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccch
Confidence            5666777777777777777777777777777777777777776677666665      7777777777777777777  6


Q ss_pred             HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC
Q psy12713        245 VEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN  278 (551)
Q Consensus       245 ~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~  278 (551)
                      ..++..+|.++... |++++|+..+++++...|.+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            77777777777777 77777777777777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=9.1e-13  Score=128.43  Aligned_cols=128  Identities=13%  Similarity=0.077  Sum_probs=115.3

Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      ..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++.++|.++.. .|++++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~e   92 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRA   92 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            5666779999999999999999999999999999999999999999999999999999999999999999877 999999


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HhcccccCH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTI--EVQRGRLEEAVKCFN-----------KALPLARDE  347 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~a~~~~~~~  347 (551)
                      |+..++++++.+|++..++..++.+  +...|++++|++.++           +++.+.|+.
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999998  889999999999999           888877764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.40  E-value=1.4e-11  Score=97.06  Aligned_cols=109  Identities=17%  Similarity=0.037  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q psy12713        100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQ  176 (551)
Q Consensus       100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~  176 (551)
                      +++.+|.+++..|++++|+..|+++++..|+++.. ..+++.+|.++...| ++++|+..|++++..+|++   +.+++.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            46677777777777777777777777777766432 245566777777777 7777777777777777777   666777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ  210 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~  210 (551)
                      +|.++...|++++|+..|++++...|++..+...
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            7777777777777777777777777776655443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.38  E-value=2.6e-12  Score=101.33  Aligned_cols=88  Identities=17%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD----------GAEEYFNRSIRVDPENASLYVHRAMLMLQARG  294 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  294 (551)
                      +.+++|+..++++++.+|+++++|+++|.++...++++          +|+..|+++++++|++..+++++|.+|.. .|
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-FA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-hc
Confidence            77888888888888888888888888888888777654          77777777777777777777777777554 43


Q ss_pred             -----------CHHHHHHHHHHHHhcCcCC
Q psy12713        295 -----------NVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       295 -----------~~~~A~~~~~~~~~~~~~~  313 (551)
                                 ++++|+.+|+++++++|++
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence                       5556666666666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=8.5e-12  Score=98.40  Aligned_cols=108  Identities=20%  Similarity=0.371  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFA  316 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~  316 (551)
                      .+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+.++++++...|.+       +.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            456788899999999999999999999999999999999999999777 899999999999999988877       888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI  353 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  353 (551)
                      +..+|.++...|++++|+.+|++++...|+ +.....
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  117 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK  117 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHH
Confidence            999999999999999999999999998885 444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.37  E-value=7.6e-13  Score=123.04  Aligned_cols=156  Identities=14%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       170 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                      ....+..+|..+...|++++|+..|++++...|.+..              +...+++.++...+.         ..+++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------------~~~~~~~~~~~~~l~---------~~~~~  234 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLYGKYQDMALAVK---------NPCHL  234 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------------HTCCHHHHHHHHHHH---------THHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------------hhhcccHHHHHHHHH---------HHHHH
Confidence            4566788888888889999999999998888876531              112266666655442         24788


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHhC
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI-EVQRG  328 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g  328 (551)
                      ++|.++...|++++|+..|+++++.+|++..+++++|.++.. .|++++|+..|+++++++|++..++..++.+ ....+
T Consensus       235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999777 9999999999999999999999999999988 44567


Q ss_pred             CHHHHHHHHHHhcccccCHHH
Q psy12713        329 RLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       329 ~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      ..+++...|.+++...|+++.
T Consensus       314 ~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          314 LYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHhhCCCCCCCC
Confidence            788889999999999888764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.37  E-value=7.3e-12  Score=117.57  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC-------------chhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS-------------NHTKALARLLRATVYIFTSQSTKAIEDLTQLVE  126 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  126 (551)
                      .+..+...|..++..|+|++|+..|+++++..+.             .+....++..+|.++..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            3556888899999999999999999999983332             011555666666666666666666666666666


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        127 DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       127 ~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      .+|++    ..+++.+|.++...| ++++|+..|+++++++|++..++..++.++...++++++.
T Consensus       302 ~~p~~----~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          302 IDPSN----TKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             TCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchh----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66555    334455666666666 6666666666666666666666666666665555555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.36  E-value=9.3e-13  Score=101.67  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDT---HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK  301 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  301 (551)
                      |++++|+..|+++++.   +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHHHH
Confidence            6666666666666666   355666666777777777777777777777777777776677777766555 677777777


Q ss_pred             HHHHHHhcCcCCHHHH
Q psy12713        302 LIEKAISIDKSCMFAY  317 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~  317 (551)
                      .+++++...|+++...
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            7777776666665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.35  E-value=2.3e-09  Score=104.61  Aligned_cols=221  Identities=8%  Similarity=-0.017  Sum_probs=121.8

Q ss_pred             hhh-cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713         73 EHE-DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS  151 (551)
Q Consensus        73 ~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  151 (551)
                      ..| +...|..+|++++...|.                  |+++.+...|++++...| +    ...|..........+.
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~------------------~~~e~~~~iferal~~~p-s----~~LW~~Y~~f~~~~~~   62 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMS------------------KDYRSLESLFGRCLKKSY-N----LDLWMLYIEYVRKVSQ   62 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTTCC-C----HHHHHHHHHHHHHHC-
T ss_pred             HcCcchHHHHHHHHHHHHHCCC------------------CCHHHHHHHHHHHhccCC-C----HHHHHHHHHHHHHhCc
Confidence            346 477888888888887772                  789999999999999877 3    2344445554444551


Q ss_pred             CHHHHHHHHHHHHhc---CCCChhHHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-----
Q psy12713        152 DFTKAFADLDEAEKV---DPNVADSYYQRGQIYC----LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI-----  219 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----  219 (551)
                      ..+.....|+.++..   +|.+..+|......+.    ..|+.+.+...|++++...+.+...+.. ....+...     
T Consensus        63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~-~Y~~fE~~~~~~~  141 (493)
T 2uy1_A           63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWK-DFENFELELNKIT  141 (493)
T ss_dssp             ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHH-HHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHH-HHHHHHHHhcccc
Confidence            245567788888864   6778889988887754    3577889999999999963333322211 11111100     


Q ss_pred             ----cCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc--C-----HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713        220 ----VPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQE--D-----FDGAEEYFNRSIRVDPENASLYVHRAM  287 (551)
Q Consensus       220 ----~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~  287 (551)
                          +....+.+..|...++.+....+. ....|..+...-...+  -     .+.....|++++...|..+..|...+.
T Consensus       142 ~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~  221 (493)
T 2uy1_A          142 GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSE  221 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                000112333344444443332221 2233433333222110  0     233445666666666666666666665


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       288 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      .... .|+.+.|..++++++.. |.+...+..
T Consensus       222 ~~~~-~~~~~~ar~i~erAi~~-P~~~~l~~~  251 (493)
T 2uy1_A          222 YLIG-IGQKEKAKKVVERGIEM-SDGMFLSLY  251 (493)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            5443 56666666666666666 665544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.35  E-value=7.9e-12  Score=98.61  Aligned_cols=105  Identities=16%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713        148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV  227 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (551)
                      +.+ .+++|+..++++++++|+++++|.++|.++...++++.+....                              +.+
T Consensus        14 r~~-~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------------~~~   62 (158)
T 1zu2_A           14 RIL-LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------------QMI   62 (158)
T ss_dssp             HHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------------HHH
T ss_pred             HHh-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH------------------------------hHH
Confidence            445 6677777777777777777777777777777766665332211                              345


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-----------EDFDGAEEYFNRSIRVDPENASLYV  283 (551)
Q Consensus       228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~  283 (551)
                      ++|+..|+++++++|+...+++++|.+|...           |++++|+.+|+++++++|++...+.
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6777777777777777777777777777766           4889999999999999998764443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.35  E-value=2e-11  Score=96.21  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------  170 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------  170 (551)
                      .+.++..+|.++...|++++|+..+++++...|.++    .++..+|.++...| ++++|+..+++++...|.+      
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHH
Confidence            344555555555555555555555555555555542    23344555555555 5555555555555555444      


Q ss_pred             -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  211 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  211 (551)
                       +.++..+|.++...|++++|+..|++++...| +......+
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  118 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence             45555555555555555555555555555555 34433333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.33  E-value=1.8e-11  Score=100.65  Aligned_cols=143  Identities=11%  Similarity=0.123  Sum_probs=115.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--Cchh
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKI  134 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~  134 (551)
                      .+..+...|..+...|++++|+..+++++...+..   .....++..+|.++...|++++|+.++++++...+.  ++..
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            45678889999999999999999999998876531   233468889999999999999999999999886433  3344


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                      ...++..+|.++...| ++++|+..+++++...+.      ...++..+|.++...|++++|+..+++++++...
T Consensus        88 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4667888999999999 999999999999876322      2467888999999999999999999998876543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.32  E-value=2.8e-12  Score=98.95  Aligned_cols=95  Identities=13%  Similarity=-0.021  Sum_probs=49.2

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      .|++++|+..|+++++..+++|..+.++..+|.++...|++++|+..|+++++.+|+++    .+++.+|.++...| ++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g-~~   77 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNLG-RY   77 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcC-CH
Confidence            35555555555555555211112555555555555555555555555555555555552    23344555555555 55


Q ss_pred             HHHHHHHHHHHhcCCCChhH
Q psy12713        154 TKAFADLDEAEKVDPNVADS  173 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~  173 (551)
                      ++|+..+++++...|+++.+
T Consensus        78 ~~A~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHH
Confidence            55555555555555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=2e-11  Score=114.63  Aligned_cols=120  Identities=8%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEK----------------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN  201 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  201 (551)
                      .+..+|..+...| ++++|+..|+++++                .+|.+..++.++|.++..+|++++|+.+++++++++
T Consensus       225 ~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            4455566666666 66666666666655                334444455555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA  264 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  264 (551)
                      |++..+++.+|.++...      |++++|+..++++++.+|++..++..++.++...++.+++
T Consensus       304 p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            55555554444444444      4455555555555544444444444444444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=1.4e-11  Score=101.37  Aligned_cols=62  Identities=19%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA------DSYYQRGQIYCLFGQYEEALRNLDKTIA  199 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~  199 (551)
                      .++..+|.++...| ++++|+..+++++...+...      .++..+|.++...|++++|+..+++++.
T Consensus        10 ~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A           10 RAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444 44444444444444332211      2444445555555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=2.1e-11  Score=93.03  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHH
Q psy12713        244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAY  317 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~  317 (551)
                      ++..+..+|.++...|++++|+..|+++++.+|+++.++.++|.+++. .|++++|+..++++++.+|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999777 999999999999999999998      8889


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHh
Q psy12713        318 ETLGTIEVQRGRLEEAVKCFNKA  340 (551)
Q Consensus       318 ~~l~~~~~~~g~~~~A~~~~~~a  340 (551)
                      ..+|.++...|+++.|+..+++.
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHh
Confidence            99999999999888877766554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=4.7e-11  Score=91.02  Aligned_cols=89  Identities=8%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             hhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch------HHHHHHHHHHHH
Q psy12713        455 ESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HVARAQRHFVWT  528 (551)
Q Consensus       455 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~  528 (551)
                      .+..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++      ..+++.+|.++.
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            34447788999999999999999999999999999999999999999999999999999999      999999999999


Q ss_pred             Hhhhhhhhhhhhccc
Q psy12713        529 STLAELMAFSDEFMI  543 (551)
Q Consensus       529 ~~~~~~~a~~~~~~~  543 (551)
                      ..|+...++...-.+
T Consensus        90 ~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           90 AVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHCCCCCSSSSSSC
T ss_pred             HHHhHhhhHhHHHHh
Confidence            999877777655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.16  E-value=3e-10  Score=87.10  Aligned_cols=85  Identities=16%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        263 GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      +|+..|+++++.+|+++.+++.+|.+++. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56777888888888888888888888666 88888888888888888888888888888888888888888888888888


Q ss_pred             cccCHH
Q psy12713        343 LARDEA  348 (551)
Q Consensus       343 ~~~~~~  348 (551)
                      +.|...
T Consensus        82 ~~~~~~   87 (115)
T 2kat_A           82 AAQSRG   87 (115)
T ss_dssp             HHHHHT
T ss_pred             hccccc
Confidence            776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=5.2e-10  Score=81.55  Aligned_cols=85  Identities=29%  Similarity=0.487  Sum_probs=75.4

Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Q psy12713        243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  322 (551)
Q Consensus       243 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  322 (551)
                      .++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++..+|.
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3567888899999999999999999999999999999999999999777 899999999999999999999999999998


Q ss_pred             HHHHhC
Q psy12713        323 IEVQRG  328 (551)
Q Consensus       323 ~~~~~g  328 (551)
                      ++...|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            887765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.14  E-value=5.4e-10  Score=85.66  Aligned_cols=95  Identities=12%  Similarity=0.148  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS  308 (551)
Q Consensus       229 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  308 (551)
                      +|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            577888888899999999999999999999999999999999999999999999999999777 8999999999999988


Q ss_pred             cCcCC--HHHHHHHHHHH
Q psy12713        309 IDKSC--MFAYETLGTIE  324 (551)
Q Consensus       309 ~~~~~--~~~~~~l~~~~  324 (551)
                      ..|..  ......+...+
T Consensus        82 ~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHH
Confidence            87643  33444444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.05  E-value=2.2e-09  Score=103.69  Aligned_cols=135  Identities=15%  Similarity=0.131  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHhhcC-----CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCch
Q psy12713         64 LLSKAKRAFEHEDYLTAIRHCTEEIEST-----SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPK  133 (551)
Q Consensus        64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~  133 (551)
                      .+..+..+..+|+|++|+..++++++..     |+.+....++..+|.+|..+|+|++|+.++++++.+     .|++|.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            3455666778999999999999998753     333567888999999999999999999999999874     566666


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                      + ..++.++|.+|..+| ++++|+..+++++.+     .|++   .+....++.++..++.+++|...|.++.+.
T Consensus       392 ~-a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          392 L-GMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             H-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 678899999999999 999999999999875     4555   455678888899999999999999887653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.05  E-value=2.8e-09  Score=77.52  Aligned_cols=83  Identities=19%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+.+++.+|.++...|++++|+..+++++...|+++    .++..+|.++...| ++++|+..+++++..+|+++.++..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            445555555555555666666666665555555542    23444555555555 5666666666665555555555555


Q ss_pred             HHHHHHHh
Q psy12713        177 RGQIYCLF  184 (551)
Q Consensus       177 la~~~~~~  184 (551)
                      +|.++...
T Consensus        83 l~~~~~~~   90 (91)
T 1na3_A           83 LGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            55555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=1.6e-09  Score=80.42  Aligned_cols=73  Identities=25%  Similarity=0.394  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       275 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +|+++.+++.+|.+++. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|...
T Consensus         3 ~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             --CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            57777777777777666 77777777777777777777777777777777777777777777777777765443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=9.6e-10  Score=81.61  Aligned_cols=91  Identities=13%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      +..|..+...|++++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++.+|+++.++..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            46788888999999999999999999999988 99999999777 899999999999999999988877644        


Q ss_pred             CCHHHHHHHHHHhcccccCHH
Q psy12713        328 GRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +.+.+++..|+++...+|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567788888888888877653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=3.3e-09  Score=78.70  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHH
Q psy12713        240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAY  317 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~  317 (551)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..+++++++.|.  +....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            4688899999999999999999999999999999999999999999999777 99999999999999987654  23444


Q ss_pred             HHHHHHHHH
Q psy12713        318 ETLGTIEVQ  326 (551)
Q Consensus       318 ~~l~~~~~~  326 (551)
                      ..+..++..
T Consensus        81 ~~l~~~l~~   89 (100)
T 3ma5_A           81 SELQDAKLK   89 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.97  E-value=1.2e-07  Score=85.96  Aligned_cols=172  Identities=15%  Similarity=0.114  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHhhCCCCCCcHHHHHHHHhhCCCCCCCCCCCCCCcccccCCCCCCcchHHHHHHHHHHHhh---hcHHHH
Q psy12713          4 DRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEH---EDYLTA   80 (551)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A   80 (551)
                      .+..+.+..+...-.+.++..+.-.. ....+.+                     ..+-.++.+|..++..   .++.+|
T Consensus       161 alQdei~~~I~~aL~~~l~~~e~~r~-~~~~p~~---------------------~~Aydl~Lra~~~l~~~~~~~~~~A  218 (372)
T 3ly7_A          161 AIQNDLLESLSKALNQPWPQRMQETL-QKILPHR---------------------GALLTNFYQAHDYLLHGDDKSLNRA  218 (372)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHH-HHHSCSS---------------------GGGHHHHHHHHHHHHHCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhhHHHHHHH-hccCCCC---------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34455666666666666665443222 1222222                     2677888999988875   456899


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc----hHHHH----HHHH--HhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713         81 IRHCTEEIESTSSNHTKALARLLRATVYIFTSQS----TKAIE----DLTQ--LVEDTSVDPKIKVNAHIKRAVVHLHAA  150 (551)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~----~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~  150 (551)
                      +.+|+++++.+|+   .+.++..++.++.....+    .....    .+..  ++...|.+    ..++..++..+...|
T Consensus       219 ~~l~e~Al~lDP~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~----a~~~~alal~~l~~g  291 (372)
T 3ly7_A          219 SELLGEIVQSSPE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL----SIIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC----HHHHHHHHHHHHhCC
Confidence            9999999999999   888888888887632111    11111    1222  22345555    335556888888889


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Q psy12713        151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV  206 (551)
Q Consensus       151 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~  206 (551)
                       ++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+++.++|....
T Consensus       292 -d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          292 -KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             -CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             -CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence             999999999999999974 678889999999999999999999999999997753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.97  E-value=2.4e-09  Score=79.45  Aligned_cols=89  Identities=25%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..|.++...| ++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..         
T Consensus         5 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------   74 (99)
T 2kc7_A            5 KTIKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---------   74 (99)
T ss_dssp             HHHHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence            3677777777 777777777777777777777 77777777777777777777777777777777665531         


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNV  244 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~  244 (551)
                           +.+.+++..|+++...+|++
T Consensus        75 -----~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -----KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -----HHHHHHHHHHCCTTHHHHCC
T ss_pred             -----HHHHHHHHHHHHHhccCccc
Confidence                 55566666666665555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.94  E-value=1.5e-07  Score=81.42  Aligned_cols=115  Identities=9%  Similarity=-0.022  Sum_probs=85.6

Q ss_pred             HhcCCCCHHHHHHHHHHHHHh-----hcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhc-----cCHHHHH
Q psy12713        198 IALNPNFHVARAQRHFVVHKM-----IVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQ-----EDFDGAE  265 (551)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~  265 (551)
                      -+.+|++...++..|......     .-....+....|...++++++++|+  +..+|..+|.+|...     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            345677777777666665443     2245667788888888888888888  556888888888874     8888888


Q ss_pred             HHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713        266 EYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       266 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  312 (551)
                      .+|+++++++|+. ..+++..|..++...|++++|..++++++..+|.
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            8888888888864 7888888877555348888888888888887766

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=4.2e-08  Score=77.54  Aligned_cols=119  Identities=17%  Similarity=0.037  Sum_probs=98.7

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----h
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----A  149 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~  149 (551)
                      .+|+++|+.+|+++.+..+.   ..  .  +|.+|...+.+++|+.+|+++.+..  +    ..+++.+|.+|..    .
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~---~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~----~~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM---FG--C--LSLVSNSQINKQKLFQYLSKACELN--S----GNGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT---TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHCSSSC
T ss_pred             ccCHHHHHHHHHHHHcCCCH---hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC--C----HHHHHHHHHHHHcCCCCC
Confidence            46889999999999988754   33  3  8999988889999999999999863  3    4577889999998    7


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713        150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQ  210 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~  210 (551)
                      + ++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+..  ++.+...
T Consensus        75 ~-d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~  134 (138)
T 1klx_A           75 K-DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI  134 (138)
T ss_dssp             C-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             c-cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            8 999999999999876  678999999999999    899999999999998863  4444433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.91  E-value=2.6e-07  Score=83.75  Aligned_cols=156  Identities=20%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             HHHhcCCCChhHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713        162 EAEKVDPNVADSY--YQRGQIYCLFGQ---YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN  236 (551)
Q Consensus       162 ~~~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  236 (551)
                      ++....|.++.+|  +..|..+...++   ..+|+.+|+++++++|++..++..++.++....                 
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-----------------  247 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-----------------  247 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----------------
Confidence            3445567766554  345555555443   467888888888888888887777766654220                 


Q ss_pred             HHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713        237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  316 (551)
                        ...|.......          ....+... ..++..+|.++.++..++..++. .|++++|+..+++++.++|+ ..+
T Consensus       248 --~~~~~~~~~~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~-~gd~d~A~~~l~rAl~Ln~s-~~a  312 (372)
T 3ly7_A          248 --SQHPLDEKQLA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALV-KGKTDESYQAINTGIDLEMS-WLN  312 (372)
T ss_dssp             --HHSCCCHHHHH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred             --ccCCCchhhHH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCC-HHH
Confidence              00011110000          01122221 12345678888888888777665 78888888888888888864 677


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      +..+|.++...|++++|++.|++|+.++|..+.
T Consensus       313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            788888888888888888888888888888764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=5.3e-08  Score=76.92  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIK  301 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~  301 (551)
                      +++++|+.+|+++.+.......    +|.+|...+..++|+.+|+++.+.  .++.+.+++|.+|..-   .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            7888899999998887644433    888888888888899999998876  6788889999886541   578999999


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhcccc
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQ----RGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  344 (551)
                      +|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            99999876  568899999999998    889999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.86  E-value=3.4e-08  Score=95.37  Aligned_cols=129  Identities=10%  Similarity=0.026  Sum_probs=98.2

Q ss_pred             HHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--
Q psy12713        103 LRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV--  170 (551)
Q Consensus       103 ~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~--  170 (551)
                      ..+..+..+|++++|+..+++++++     .|+++.. ..++.++|.+|..+| ++++|+.++++++..     .|++  
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~-a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV-LRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            3455577899999999999999885     4566554 778899999999999 999999999999875     3444  


Q ss_pred             -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713        171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR---AQRHFVVHKMIVPGDRERVEQSLKEFRNFVD  239 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  239 (551)
                       ...+.++|.+|..+|++++|+..+++++.+     .|+++...   ..++.++...      +.+++|...|.++.+
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~------~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL------RMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence             567889999999999999999999999975     56665443   2333333333      666666666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.80  E-value=9.2e-08  Score=82.78  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=127.4

Q ss_pred             hcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---------------------CchHHHHHHHHHhhcCCCCch
Q psy12713         75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS---------------------QSTKAIEDLTQLVEDTSVDPK  133 (551)
Q Consensus        75 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~~~  133 (551)
                      .-..-.+..++-.+..+|+   +...+...|..|..-+                     ++..|.+.|.++...      
T Consensus        46 ~~~P~~Lk~~e~Ll~~~P~---~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y------  116 (301)
T 3u64_A           46 QSLPLVLKVYEALHLQNPA---HRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY------  116 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HhccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH------
Confidence            3456678888999999998   5544444444443221                     133445555544331      


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHH-hcCCCChhHHHHHHHHHHH---h--C------CHHHHHHHHHH
Q psy12713        134 IKVNAHIKRAVVHLHAASDFTKAFA-----DLDEAE-KVDPNVADSYYQRGQIYCL---F--G------QYEEALRNLDK  196 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~~A~~-----~~~~~~-~~~~~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~  196 (551)
                            -..+.+.. .. .+.+++.     -+..++ ..+|++++.++..|.+...   .  |      ....|...+++
T Consensus       117 ------~~raL~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~ler  188 (301)
T 3u64_A          117 ------ALSSLETA-YP-GFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLER  188 (301)
T ss_dssp             ------HHHHHHHH-ST-THHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHh-Cc-cHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHH
Confidence                  11122211 11 2333322     223333 4578888888887776644   1  2      36789999999


Q ss_pred             HHhcCCC--CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Q psy12713        197 TIALNPN--FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQ-EDFDGAEEYFNRSI  272 (551)
Q Consensus       197 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~-~~~~~A~~~~~~~~  272 (551)
                      +++++|+  +..++..+|..+...- -.--|+.++|..+|++++.++|+. ..+++.+|..+... |++++|...+++++
T Consensus       189 AleLDP~~~~GsA~~~LG~lY~~vP-p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          189 ACDLWPSYQEGAVWNVLTKFYAAAP-ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHSC-TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHhCC-CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999  6779999998887630 112399999999999999999975 99999999999884 99999999999999


Q ss_pred             hcCCCC
Q psy12713        273 RVDPEN  278 (551)
Q Consensus       273 ~~~~~~  278 (551)
                      ...|..
T Consensus       268 ~a~p~~  273 (301)
T 3u64_A          268 AIDPES  273 (301)
T ss_dssp             HCCGGG
T ss_pred             cCCCCC
Confidence            987763

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=1.1e-07  Score=68.61  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        275 DPENASLYVHRAMLMLQARGN---VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       275 ~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      +|+++..+..+|.+++. .++   .++|...++++++.+|+++.++..+|..++..|++++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            56777777777777654 333   6777788888888888888888888888888888888888888877777763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.73  E-value=2.2e-07  Score=72.41  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                      +....+.+.|.+.+...|.+.++.+.+|+++.+.+   +.++++..++.+++.+ | +..++++++|..+++ .|+|++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A   90 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence            45555555565555555556666666666666655   4446666666666655 4 335555666666555 6666666


Q ss_pred             HHHHHHHHhcCcCCHHHHHH
Q psy12713        300 IKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (551)
                      ..+++++++.+|++..+...
T Consensus        91 ~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHH
Confidence            66666666666655544443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.65  E-value=2.6e-07  Score=66.55  Aligned_cols=72  Identities=13%  Similarity=0.044  Sum_probs=52.3

Q ss_pred             CCCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713        241 HSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC  313 (551)
Q Consensus       241 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  313 (551)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.++..+|..++. .|+|++|+.+++++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            46677777777777765544   5777777777777777777777777777666 777777777777777777663

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.62  E-value=4.6e-07  Score=70.57  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-c-CCHHHHHHHHHHHHHhCCHHHHH
Q psy12713        260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---NVDEAIKLIEKAISID-K-SCMFAYETLGTIEVQRGRLEEAV  334 (551)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~  334 (551)
                      ....+.+.|.+.+..++.+..+.+++|+++.+ .+   +.++++..++.+++.+ | +..+.++.+|..+.+.|+|++|+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34567778888888889999999999999776 77   6679999999999998 7 56899999999999999999999


Q ss_pred             HHHHHhcccccCHHHHHHHHh
Q psy12713        335 KCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       335 ~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      .++++++++.|++..+.....
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999987655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.59  E-value=9.5e-07  Score=83.83  Aligned_cols=90  Identities=10%  Similarity=0.046  Sum_probs=45.3

Q ss_pred             hhcHHHHHHHHHHHhhc-----CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHH
Q psy12713         74 HEDYLTAIRHCTEEIES-----TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRA  143 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la  143 (551)
                      .|+|++|+..++++++.     .|+.+....++..+|.+|..+|+|++|+.++++++.+     .|++|.+ ...+.++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV-ASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHH
Confidence            34455555555555542     2222334455555555555555555555555555542     3333333 34455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q psy12713        144 VVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus       144 ~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      .+|..+| ++++|+..+++++.
T Consensus       390 ~~~~~qg-~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLE-NKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHhcc-CHHHHHHHHHHHHH
Confidence            5555555 55555555555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.57  E-value=7.6e-07  Score=84.72  Aligned_cols=96  Identities=18%  Similarity=0.090  Sum_probs=47.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHhhcC-----CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHH
Q psy12713         68 AKRAFEHEDYLTAIRHCTEEIEST-----SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVN  137 (551)
Q Consensus        68 a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~  137 (551)
                      ...+..+|+|++|+..++++++..     |+.+....++..+|.+|..+|+|++|+.++++++..     .|++|.. ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~  372 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR-GV  372 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH-HH
Confidence            333444555555555555555432     222334455555555555555555555555555542     2333332 44


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      .++++|.+|..+| ++++|+..+++++.
T Consensus       373 ~l~nLa~~~~~~g-~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQG-MFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence            4555555555555 55555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.55  E-value=2.7e-07  Score=68.61  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             hhhchhhhhcChhHHHHhhHHhhccC-------CCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713        454 NESGQKHAASDFTKAFADLDEAEKVD-------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV  526 (551)
Q Consensus       454 ~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  526 (551)
                      ..+..++..|+|..|+.+|++|++..       +..+.++..+|.++.++|++++|+..++++++++|++..+..+++.+
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            34444788899999999999999863       34688999999999999999999999999999999999999998843

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.45  E-value=1.8e-06  Score=82.02  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             HHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---hhHHH
Q psy12713        109 IFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV---ADSYY  175 (551)
Q Consensus       109 ~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~  175 (551)
                      ...|+|++|+..+++++++     .|+++.. ..++.++|.+|..+| ++++|+.++++++..     .|++   ...+.
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYM-LHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHH-HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            3468899999999999884     5666654 678899999999999 999999999999975     3444   56789


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH
Q psy12713        176 QRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR  208 (551)
Q Consensus       176 ~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~  208 (551)
                      ++|.+|..+|++++|+..|++++++     .|+++...
T Consensus       387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999999999975     56666543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.41  E-value=2.9e-06  Score=62.91  Aligned_cols=76  Identities=21%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      +.-++.+|..++..|+|..|+..|+++++..       +..+.++..+|.++++ .|+++.|+.+++++++..|++..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3445666777777777777777777666542       2234556666666555 6666666666666666666666665


Q ss_pred             HHHH
Q psy12713        318 ETLG  321 (551)
Q Consensus       318 ~~l~  321 (551)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.38  E-value=6.1e-05  Score=73.36  Aligned_cols=175  Identities=11%  Similarity=0.064  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh---hcCCChhHHHHHHHHHHHHHHhC-CCcHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVHKM---IVPGDRERVEQSLKEFRNFVDTH-SNVVEAC  248 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  248 (551)
                      +...-..+.+.|+.++|++.|+++.+..- .+...+..+-.++...   ......+..++|...|+++.... +.+..++
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            33444555666666666666666654321 1233333322222111   12234578899999999987754 3367789


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQ  326 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  326 (551)
                      ..+...+.+.|++++|...|++..+.. ..+...|..+...+.+ .|+.++|.++|+++.+.. ..+...|..+...+.+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999987753 2346677777777666 999999999999998753 2247889999999999


Q ss_pred             hCCHHHHHHHHHHhcc--cccCHHH
Q psy12713        327 RGRLEEAVKCFNKALP--LARDEAE  349 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~~--~~~~~~~  349 (551)
                      .|+.++|.+++++..+  ..|+...
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999999999998765  3566544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.34  E-value=6.7e-06  Score=78.24  Aligned_cols=104  Identities=6%  Similarity=0.028  Sum_probs=84.4

Q ss_pred             HHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--
Q psy12713        103 LRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV--  170 (551)
Q Consensus       103 ~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~--  170 (551)
                      ....-+..+|++++|+..+++++++     .|+++. ...++.++|.+|..+| ++++|+.++++++..     .|++  
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~  369 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPV  369 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChH
Confidence            3344466789999999999999975     455554 4778899999999999 999999999999875     3444  


Q ss_pred             -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH
Q psy12713        171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR  208 (551)
Q Consensus       171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~  208 (551)
                       ...+.++|.+|..+|++++|+..+++++++     .|+++...
T Consensus       370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence             567889999999999999999999999875     56666543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.30  E-value=0.00016  Score=70.36  Aligned_cols=163  Identities=8%  Similarity=-0.006  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcC-CCCh
Q psy12713        102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA---------ASDFTKAFADLDEAEKVD-PNVA  171 (551)
Q Consensus       102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~~A~~~~~~~~~~~-~~~~  171 (551)
                      ..+-..+.+.|+.++|++.|+++.+..-.. .  ..+|..+-.++...         + ..++|...|++..... +.+.
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d--~~tyn~Li~~c~~~~~~~~~~~~~-~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-S--QYHYNVLLYVCSLAEAATESSPNP-GLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C--HHHHHHHHHHHTTCCCCSSSSCCH-HHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C--HhHHHHHHHHHHhCCchhhhhhcc-hHHHHHHHHHHHHHhCCCCCH
Confidence            334455566777777777777766542211 1  12233333333322         2 3667777777766542 2356


Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHH
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIALN-PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACT  249 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  249 (551)
                      .+|..+...|.+.|++++|...+++..+.. ..+...+..+...+.+.      |+.++|...|+++.+.. ..+...+.
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~------g~~~~A~~l~~~M~~~G~~Pd~~ty~  179 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK------GDADKAYEVDAHMVESEVVPEEPELA  179 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            667777777777777777777777766542 22344455555444444      77777777777766543 22455667


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRV  274 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~  274 (551)
                      .+...+.+.|+.++|...+++.-+.
T Consensus       180 ~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          180 ALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            7777777777777777777776543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.20  E-value=3.5e-05  Score=57.61  Aligned_cols=97  Identities=14%  Similarity=0.028  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG---AEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~A  299 (551)
                      .....+...|.+.....+.+..+.+.+|+++....+...   ++..++..+..+ | ..-+.++.+|..+++ .|+|++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            445556666666666666777777777777777766655   777777777665 3 345567777777666 7777777


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHH
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGT  322 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~  322 (551)
                      ..+++.+++..|++..+......
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            77777777777777666554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.04  E-value=5.3e-05  Score=57.77  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=90.6

Q ss_pred             hCCCcHHHHHHHHHHHHhccCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713        240 THSNVVEACTLFAQVLVDQEDF------DGAEEYFNRSIRVDPEN--------ASLYVHRAMLMLQARGNVDEAIKLIEK  305 (551)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~A~~~~~~  305 (551)
                      +.|.+++.|..........|+.      ++-++.|++++..-|..        ...|...+.. .. .++.++|.+.|+.
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~~   85 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQM   85 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHHH
Confidence            5688999999999999888998      88889999998876643        2345555543 34 7999999999999


Q ss_pred             HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++......+.+|...|....++|+...|.+.+.+++.+.|...++
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            998877789999999999999999999999999999999987654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.01  E-value=7.2e-05  Score=55.93  Aligned_cols=97  Identities=18%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-c-CCHHHHHHHHHHHHHhCCHHHH
Q psy12713        259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE---AIKLIEKAISID-K-SCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                      .....+...|.+....++.+..+.+++|+++.+ ..+...   ++.+++..+..+ | ..-+.++.+|..+++.|+|++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344566777777777788889999999999766 676655   999999999877 5 4578999999999999999999


Q ss_pred             HHHHHHhcccccCHHHHHHHHhH
Q psy12713        334 VKCFNKALPLARDEAELSHIYSL  356 (551)
Q Consensus       334 ~~~~~~a~~~~~~~~~~~~~~~~  356 (551)
                      ..+++.+++..|++..+..+...
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999876655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.96  E-value=7.1e-05  Score=57.07  Aligned_cols=114  Identities=7%  Similarity=0.001  Sum_probs=62.7

Q ss_pred             cCCCChhHHHHHHHHHHHhCCH------HHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713        166 VDPNVADSYYQRGQIYCLFGQY------EEALRNLDKTIALNPNFHV-ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV  238 (551)
Q Consensus       166 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  238 (551)
                      ..|++++.|..........|+.      ++-++.|++++..-|.... .|...+.+..+-..+...++.++|.+.|+.++
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5788888888888888888888      7888888888877664321 01111111100011112255555555555555


Q ss_pred             HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Q psy12713        239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA  279 (551)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  279 (551)
                      .....-+.+|...|..-.++|+...|.+.+.+++.+.|...
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            55444455555555555555555555555555555555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.80  E-value=5.6e-05  Score=59.16  Aligned_cols=123  Identities=11%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT---  128 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---  128 (551)
                      ......++.....++..|.|+.|+.....++...   |+.   .....++..+|.+++..|+|..|...|+++++..   
T Consensus        17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999988866553   221   3456789999999999999999999999997742   


Q ss_pred             CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      +.++.....    .+.    .. ....       ... .+.+.++.+.++.|+...+++++|+..++.+
T Consensus        97 ~k~~s~~~~----~~~----~s-s~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           97 SKTSKVRPS----TGN----SA-STPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             hcCCCcccc----ccc----cC-CCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            222110000    110    00 0000       011 1334567777777777777777777776653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.47  E-value=0.0024  Score=47.82  Aligned_cols=76  Identities=7%  Similarity=0.009  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        244 VVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       244 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      .+.+.+.+|+++.+..+.   .+++..++..+..+|. .-+.++.+|..+++ .|+|++|..+.+.+++..|++..+...
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            345566666666655433   3455666666555552 24455556666555 666666666666666666666554443


Q ss_pred             H
Q psy12713        320 L  320 (551)
Q Consensus       320 l  320 (551)
                      .
T Consensus       118 k  118 (134)
T 3o48_A          118 K  118 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.44  E-value=0.00039  Score=52.04  Aligned_cols=68  Identities=18%  Similarity=0.100  Sum_probs=60.9

Q ss_pred             cChhHHHHhhHHhhccCC-CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713        463 SDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST  530 (551)
Q Consensus       463 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  530 (551)
                      .+..+++.+++..++.+| ..-+.+|.+|..+.++|+|++|..+.+.++++.|+|..|......+-.+.
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki  125 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI  125 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            467789999999999998 46889999999999999999999999999999999999988877776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.42  E-value=0.0056  Score=46.51  Aligned_cols=77  Identities=6%  Similarity=0.024  Sum_probs=45.4

Q ss_pred             CCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        242 SNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      ...+.+.+++|+++....+.   .+++..++..+...|. .-+.++.+|..+++ .|+|++|..+.+.+++..|++..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            34456666666666665543   3566666666665553 34455666666555 6666666666666666666665544


Q ss_pred             HH
Q psy12713        318 ET  319 (551)
Q Consensus       318 ~~  319 (551)
                      ..
T Consensus       115 ~L  116 (144)
T 1y8m_A          115 AL  116 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.40  E-value=0.0033  Score=49.31  Aligned_cols=139  Identities=8%  Similarity=0.031  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---CC--CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDT---SV--DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD---P  168 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~--~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~---~  168 (551)
                      ...+++.-...++..|.|+.|+-....++...   |+  .+.....++..+|..++..+ +|..|...|++++...   +
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~-eyrrA~~~y~qALq~~k~l~   97 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK-EYRNAVSKYTMALQQKKALS   97 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHh
Confidence            34566777778889999999999998877753   33  35566778899999999999 9999999999998653   2


Q ss_pred             CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                      ........++.    ...+..       ... .+.+.+..+.++.|+...      +++++|+..++.+-.. ...+.+.
T Consensus        98 k~~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l------~~~~~Ai~~Le~Ip~k-~Rt~kvn  158 (167)
T 3ffl_A           98 KTSKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVL------KQDKDAIAILDGIPSR-QRTPKIN  158 (167)
T ss_dssp             ------------------------------C-CCCHHHHHHHHHHHHHHT------TCHHHHHHHHHTSCGG-GCCHHHH
T ss_pred             cCCCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHH------CCHHHHHHHHhcCCch-hcCHHHH
Confidence            22222111110    000000       111 244667889999999988      9999999999996332 2346666


Q ss_pred             HHHHHHH
Q psy12713        249 TLFAQVL  255 (551)
Q Consensus       249 ~~la~~~  255 (551)
                      ..+|.+|
T Consensus       159 m~LakLy  165 (167)
T 3ffl_A          159 MLLANLY  165 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            6777664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.34  E-value=0.011  Score=45.02  Aligned_cols=83  Identities=11%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713        202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS  280 (551)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  280 (551)
                      .......+++++++.+.   ....+..+++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S---~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKS---TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            45677888888887544   4557788999999999998885 5678899999999999999999999999999999987


Q ss_pred             HHHHHHH
Q psy12713        281 LYVHRAM  287 (551)
Q Consensus       281 ~~~~l~~  287 (551)
                      +......
T Consensus       113 A~~Lk~~  119 (144)
T 1y8m_A          113 VGALKSM  119 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6654433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.00  E-value=0.22  Score=46.12  Aligned_cols=139  Identities=9%  Similarity=-0.014  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHH-hCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIF-TSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      -.+.+..|..+...|++++-..++......-+.-  .........+-..+.. -+..+.-++.+..+++...+....+..
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667888999999999988888877654433321  1112222222222222 234444455555555543322222222


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713        138 --AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN--V----ADSYYQRGQIYCLFGQYEEALRNLDKTIAL  200 (551)
Q Consensus       138 --~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  200 (551)
                        .-..+|..|+..| +|.+|...+.+..+.-..  +    .+++.....+|...+++.++...+.++...
T Consensus        99 ~~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           99 QSLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence              2236788888888 888888777777653211  1    355666677777788888887777776543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.53  E-value=0.068  Score=45.79  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713        290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY  354 (551)
Q Consensus       290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  354 (551)
                      ++ .|+.++|+......++.+|.+......+.++++-.|+++.|.+.++.+.+++|+.......|
T Consensus         8 l~-~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            8 LS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TT-TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             Hh-CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            55 89999999999999999999999999999999999999999999999999999987766555

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.48  E-value=0.54  Score=43.52  Aligned_cols=176  Identities=11%  Similarity=-0.026  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH-
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN-AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY-  174 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-  174 (551)
                      .-.+.+.+|..|...|++++-.+++......-+.-+..... ....+-..+....+..+.-++.+..+++...+.-..| 
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999988876654433332221 1222333333322256666666766665433332222 


Q ss_pred             -----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCc
Q psy12713        175 -----YQRGQIYCLFGQYEEALRNLDKTIALNPN--FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNV  244 (551)
Q Consensus       175 -----~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~  244 (551)
                           ..+|.+|...|+|.+|.+.+.+..+....  +....  +-.......++...+++.++...+.++....   +.+
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--lev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~  175 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--VEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP  175 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence                 37899999999999999999988865332  21111  1111111134444589999998888886543   122


Q ss_pred             H----HHHHHHHHHHH-hccCHHHHHHHHHHHHhc
Q psy12713        245 V----EACTLFAQVLV-DQEDFDGAEEYFNRSIRV  274 (551)
Q Consensus       245 ~----~~~~~la~~~~-~~~~~~~A~~~~~~~~~~  274 (551)
                      |    .....-|..++ ..++|..|...|-+++..
T Consensus       176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            2    34556788888 899999999999988754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.049  Score=54.99  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      .+..-+..+...|+++-|+.+.++++...|.....|..++.+|.. +|+++.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            455556777778888888888888888888888888888888777 88888888777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.30  E-value=0.26  Score=51.44  Aligned_cols=101  Identities=12%  Similarity=-0.012  Sum_probs=70.1

Q ss_pred             HHHHHhhhcHHHHHH-HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         68 AKRAFEHEDYLTAIR-HCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        68 a~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      .......+++++|.. ++    ..-|+    ...+......+...|.+++|+...+        ++..       .....
T Consensus       606 ~~~~~~~~~~~~a~~~~l----~~i~~----~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~-------~f~~~  662 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVL----PNVEG----KDSLTKIARFLEGQEYYEEALNISP--------DQDQ-------KFELA  662 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTG----GGCCC----HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH-------HHHHH
T ss_pred             HhHHHHhCCHHHHHHHHH----hcCCc----hHHHHHHHHHHHhCCChHHheecCC--------Ccch-------heehh
Confidence            445567889999865 33    22230    1122556666778888888876642        2221       23345


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                      ...| +++.|.+..+     ..++...|..+|..+...|+++.|+.+|.++
T Consensus       663 l~~~-~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVG-QLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHT-CHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcC-CHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            7788 9999998754     3456889999999999999999999999876

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.47  Score=45.17  Aligned_cols=205  Identities=11%  Similarity=-0.004  Sum_probs=110.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc---CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES---TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      .++..+..+... ..|++++|++.+...-+.   ..+......+...+...+...|+++...+.+.-........... .
T Consensus        16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i   93 (445)
T 4b4t_P           16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-I   93 (445)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-H
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-H
Confidence            445556666665 458999999887554432   22223357778888899999999998888776555443322221 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--C
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKV----DPN-------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--N  203 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~  203 (551)
                      .........+...-+..+..  .....+..    ..+       .......++.++...|++.+|...+.....-.-  .
T Consensus        94 ~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~  171 (445)
T 4b4t_P           94 QYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM  171 (445)
T ss_dssp             HHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence            22222222232221022211  11222221    111       134457789999999999999999988763211  1


Q ss_pred             C----HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH---hCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713        204 F----HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD---THSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSI  272 (551)
Q Consensus       204 ~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~  272 (551)
                      +    ...+....      .++...+++.+|...+.++..   ..+..+    ..+...|.++...++|.+|-.+|..++
T Consensus       172 ~~~~kve~~l~q~------rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          172 EMSEKIQFILEQM------ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             CHHHHHHHHHHHH------HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            1    12222223      333334788888777777532   222222    355667777777888888887777776


Q ss_pred             hc
Q psy12713        273 RV  274 (551)
Q Consensus       273 ~~  274 (551)
                      ..
T Consensus       246 ~~  247 (445)
T 4b4t_P          246 QT  247 (445)
T ss_dssp             HH
T ss_pred             hc
Confidence            53

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.042  Score=55.42  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHH--Hhc-cCHHHHHHHHHHHHhc--------CCCCH----------HHHHHH
Q psy12713        227 VEQSLKEFRNFVDTHSNVVEACTLFAQVL--VDQ-EDFDGAEEYFNRSIRV--------DPENA----------SLYVHR  285 (551)
Q Consensus       227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~--~~~-~~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l  285 (551)
                      ++.|+..+++....+|.....+ ..+.+.  ... .+--+|+..+.+.++.        .+.+.          ..+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            6788899999888888764322 222222  122 2334577767666531        22221          233344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713        286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL  341 (551)
Q Consensus       286 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  341 (551)
                      +..++. .|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.+..+-
T Consensus       344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            555455 8999999999999999999999999999999999999999998888763

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.19  Score=40.25  Aligned_cols=109  Identities=8%  Similarity=-0.094  Sum_probs=78.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      +++..|..|   +..|+++.|.++.+..     +   +...|..+|......|+++-|..+|.++-..        ..  
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~--   65 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----N---DSITWERLIQEALAQGNASLAEMIYQTQHSF--------DK--   65 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HH--
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HH--
Confidence            455556554   7789999999988765     3   5678999999999999999999999986542        12  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                        +...|...| +.+.-....+.+.....     +.....+++..|+++++++.|.+.
T Consensus        66 --L~~Ly~~tg-~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           66 --LSFLYLVTG-DVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             --HHHHHHHHT-CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             --HHHHHHHhC-CHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence              555677777 77666555555543332     233455677889999988888654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.16  E-value=1.2  Score=44.22  Aligned_cols=116  Identities=13%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      .+.+.|...+.......+-+..    .+..++.-....+...++...+.+.....+++. ....++...++ .|+++.|.
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr-~~d~~~a~  305 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALG-TGDRRGLN  305 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHH-HTCHHHHH
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHH-CCCHHHHH
Confidence            5678888888776554333322    223334344445545677777777665444333 33334444466 79999999


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+|..+-......+...+.+|..+...|+.++|..+|+++..
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999876554445678889999999999999999999999875

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.12  E-value=1.2  Score=44.09  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ....|..|...+..|++..+...... +...|-   .+  +......-...++.  .-..+...++..|+.|..  ..+.
T Consensus         6 ~~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL---~~--yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~--~~Lr   75 (618)
T 1qsa_A            6 QRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPL---YP--YLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPA--RTLQ   75 (618)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTT---HH--HHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCc---HH--HHHHHHHHhCcccC--CHHHHHHHHHHCCCChhH--HHHH
Confidence            45678899999999999877665443 334443   22  22222222222221  112445555567776543  1222


Q ss_pred             HHH-HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        141 KRA-VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       141 ~la-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                      ... ..+...+ ++..-+.++..    .|.+..............|+..+|......+.....
T Consensus        76 ~~~l~~l~~~~-~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~  133 (618)
T 1qsa_A           76 SRFVNELARRE-DWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (618)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHhCC-CHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence            222 2233455 77766654443    377788788888888899998888887777765543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.97  E-value=1.2  Score=42.46  Aligned_cols=98  Identities=11%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCcCC--
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAIS---IDKSC--  313 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~--  313 (551)
                      ......++.++...|++.+|...+.....-.  ..+    .+.+.....+++. .+++..|...++++..   ..+..  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            3456789999999999999999998875321  111    3466677777777 8999999999998742   12222  


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        314 --MFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       314 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                        ...+...|.++...++|.+|-.+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              346678899999999999999999988774

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.82  E-value=0.49  Score=36.97  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=88.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713         68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL  147 (551)
Q Consensus        68 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  147 (551)
                      -...++-.+|+.++-+-.-....      .++....++.+++-.|++..++-.+.+.   +   .   ..+.+..+.||.
T Consensus         9 I~Ks~kY~dYdt~~fLsa~L~~~------~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N---T---~Ts~YYk~LCy~   73 (242)
T 3kae_A            9 ICKSIRYRDYETAIFLAACLLPC------KPEYRMLMSIVLYLNGEYTRALFHLHKL---N---T---CTSKYYESLCYK   73 (242)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTC---C---B---HHHHHHHHHHHH
T ss_pred             HHHHhhcccccHHHHHHHHHccC------ChHHHhhhhhhhhhcchHhHHHHHHHhc---c---h---HHHHHHHHHHHH
Confidence            33446667888876443333333      3346677888899999999888776432   1   1   345566888999


Q ss_pred             HhcCCHHHHHHHHHHHHhc----C-------------CCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        148 HAASDFTKAFADLDEAEKV----D-------------PNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       148 ~~~~~~~~A~~~~~~~~~~----~-------------~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      ... ++..|+..++..+.-    +             |.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+
T Consensus        74 klK-dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           74 KKK-DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HTT-CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHH-HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            999 999999999999832    2             22333 45678999999999999999999999888765543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.1  Score=49.56  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCh---
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVA---  171 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~---  171 (551)
                      ...++..+|..+...|++++|.+.|.++........ .....++....++...+ ++..+...+.++....  ..++   
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            345667788888888888888888888776544332 23566777777888888 8888888888876542  1222   


Q ss_pred             -hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713        172 -DSYYQRGQIYCLFGQYEEALRNLDKTIALNP  202 (551)
Q Consensus       172 -~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  202 (551)
                       ......|.++...++|..|...|..++....
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence             2344556677778888888888877765543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.53  E-value=0.64  Score=36.30  Aligned_cols=104  Identities=15%  Similarity=0.117  Sum_probs=76.5

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------
Q psy12713        242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI------------  309 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~------------  309 (551)
                      |..++....++.++.-.|.+..++-.+..     -+.....+..+.|+.. .+++..|+..+++.+.-            
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCccccccc
Confidence            44445666778888889999988876543     2345566667777555 99999999999999832            


Q ss_pred             -----CcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713        310 -----DKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS  351 (551)
Q Consensus       310 -----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  351 (551)
                           +|.+. ..+..+|.++.+.|+.++|+.++.......|-.+.+.
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                 23333 3566889999999999999999999999888766654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.48  E-value=0.48  Score=40.62  Aligned_cols=59  Identities=27%  Similarity=0.348  Sum_probs=41.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713        146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH  205 (551)
Q Consensus       146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  205 (551)
                      ..+.| +.++|+......++.+|.+......+..+++-.|+++.|..-++.+.+++|...
T Consensus         7 ll~~g-~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            7 ALSEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HTTTT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHhCC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            34556 777777777777777777777777777777777777777777777777776643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.16  E-value=1  Score=46.94  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=59.1

Q ss_pred             HHHHhcCCHHHHHH-HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12713        145 VHLHAASDFTKAFA-DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD  223 (551)
Q Consensus       145 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  223 (551)
                      .....+ ++++|.. .+.    .-| +..........+...|.+++|+...+        ++...+.++   ...     
T Consensus       608 ~~~~~~-~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~---l~~-----  665 (814)
T 3mkq_A          608 TLTLRG-EIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFELA---LKV-----  665 (814)
T ss_dssp             HHHHTT-CHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHH---HHH-----
T ss_pred             HHHHhC-CHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheehh---hhc-----
Confidence            334566 7777755 331    111 01122555566677777777765442        222222222   333     


Q ss_pred             hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713        224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS  271 (551)
Q Consensus       224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  271 (551)
                       |++++|.+..+.     .++...|..+|..+...|+++.|+.+|.++
T Consensus       666 -~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          666 -GQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             -TCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence             788888777542     356778888888888888888888888875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.15  E-value=0.43  Score=44.53  Aligned_cols=59  Identities=12%  Similarity=0.083  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713        175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD  239 (551)
Q Consensus       175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  239 (551)
                      ..++..+...|++.+|+..+..++..+|-+...+..+..+++..      |+..+|+..|+++..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~------Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLS------DRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTT------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666555555      666666666665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.09  E-value=0.32  Score=50.46  Aligned_cols=126  Identities=13%  Similarity=-0.049  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-PNV  170 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-~~~  170 (551)
                      ....+..+...+.+.|+.++|...|....+.     .|+     ...|..+...+.+.| +.++|.+.|+++.... ..+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----vvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PD  199 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----LDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPD  199 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----HhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCc
Confidence            5567888999999999999999999775432     333     457788999999999 9999999999998753 346


Q ss_pred             hhHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy12713        171 ADSYYQRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF  237 (551)
Q Consensus       171 ~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  237 (551)
                      ...|..+-.++.+.|+ .++|.+.+++.....-.-....+         ........-+..+++.+++
T Consensus       200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY---------~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT---------AVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH---------HSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc---------ccccChhhHHHHHHHHHHh
Confidence            7788888889999998 57899999998876533222222         3333345555666666555

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.66  E-value=1.3  Score=35.31  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |+++.|.+..+..     ++...|..+|......|+++-|..+|.++-.     ..   .+..+|.. .|+.+.-...-+
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~---~L~~Ly~~-tg~~e~L~kla~   84 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FD---KLSFLYLV-TGDVNKLSKMQN   84 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HH---HHHHHHHH-HTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HH---HHHHHHHH-hCCHHHHHHHHH
Confidence            8888888887664     5678899999999999999999999987532     22   23333333 677766555555


Q ss_pred             HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+.....     +.....+++..|+++++++.|.+.-.
T Consensus        85 iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~r  117 (177)
T 3mkq_B           85 IAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence            4443322     22334556778888888888876544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.3  Score=46.34  Aligned_cols=103  Identities=11%  Similarity=-0.014  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN---VADSYYQRGQIYCLFGQYEEALRNLDKTIALN--PNFHVARAQRH  212 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~  212 (551)
                      ++..+|..|...| ++++|.+.|.++......   ..+.+.....++...+++..+...+.++....  ..++.....+-
T Consensus       133 ~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          133 AWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             CCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3344777777777 777777777776654322   24666667777777777777777777765431  12222222211


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHhCCC
Q psy12713        213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSN  243 (551)
Q Consensus       213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  243 (551)
                      .+..  ..+...++|..|...|..++.....
T Consensus       212 ~~~g--l~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          212 TYYG--IHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHH--HGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHH--HHHHHhChHHHHHHHHHHHhccCCc
Confidence            1111  2333447777777777776665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.51  E-value=0.73  Score=42.96  Aligned_cols=59  Identities=14%  Similarity=0.063  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      ..++..++. .|++.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++..
T Consensus       175 ~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555556 89999999999999999999999999999999999999999999988754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.10  E-value=0.71  Score=48.00  Aligned_cols=84  Identities=6%  Similarity=-0.047  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCC-HHH
Q psy12713        225 ERVEQSLKEFRNFVDT----HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGN-VDE  298 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~  298 (551)
                      |+.++|...|.++.+.    ...+...|+.+...+.+.|+.++|.+.|++..+.. .-+...|..+..++.+ .|+ .++
T Consensus       141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK-~G~~~e~  219 (1134)
T 3spa_A          141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR-QDQDAGT  219 (1134)
T ss_dssp             TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CCCcHHH
Confidence            5555555555443221    12234455555555555555555555555554431 1123333333334333 444 344


Q ss_pred             HHHHHHHHHhc
Q psy12713        299 AIKLIEKAISI  309 (551)
Q Consensus       299 A~~~~~~~~~~  309 (551)
                      |.++++++.+.
T Consensus       220 A~~Ll~EM~~k  230 (1134)
T 3spa_A          220 IERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            55555555443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.05  E-value=0.13  Score=48.89  Aligned_cols=137  Identities=11%  Similarity=0.034  Sum_probs=62.2

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHhh--cCC----C--chhHHHHHHHHHHHHHHhCCchHH----------HHHHHHHhhc
Q psy12713         66 SKAKRAFEHEDYLTAIRHCTEEIE--STS----S--NHTKALARLLRATVYIFTSQSTKA----------IEDLTQLVED  127 (551)
Q Consensus        66 ~~a~~~~~~g~~~~A~~~~~~~l~--~~~----~--~~~~~~~~~~la~~~~~~g~~~~A----------~~~~~~~~~~  127 (551)
                      ..-..++..+++++|..+....+.  .-.    .  +...+.+|+..+.++...|+....          ...+-.++..
T Consensus       141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt  220 (523)
T 4b4t_S          141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI  220 (523)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence            334456778899999888776651  111    1  034667788888888777776543          2222223222


Q ss_pred             C--CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        128 T--SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-------ADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       128 ~--~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      .  ..+.......+..+-+.|...+ .++.|..+..++.  .|..       ...++.+|.++..+++|.+|.+++..++
T Consensus       221 a~lr~D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~  297 (523)
T 4b4t_S          221 ASLKHDNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI  297 (523)
T ss_dssp             CCSCSSSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HhcccCcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            1  1233445667778889999999 9999999999885  4432       4467788999999999999999999999


Q ss_pred             hcCCCCH
Q psy12713        199 ALNPNFH  205 (551)
Q Consensus       199 ~~~~~~~  205 (551)
                      ...|.+.
T Consensus       298 rkap~~~  304 (523)
T 4b4t_S          298 RKAPHNS  304 (523)
T ss_dssp             SSCSCSS
T ss_pred             HhCCcch
Confidence            9888653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.78  E-value=0.44  Score=45.71  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      .+..+|.+..... .++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+-.
T Consensus       154 ~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5666888888888 899999999999999999999999999999999999999999999998877788887777655443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.46  E-value=0.54  Score=45.10  Aligned_cols=63  Identities=14%  Similarity=0.065  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713        226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML  288 (551)
Q Consensus       226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  288 (551)
                      .+..|..+|.++....|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...
T Consensus       167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            345566666666666666666666666666666666666666666555554455555555544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.05  E-value=3.9  Score=44.40  Aligned_cols=123  Identities=14%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-CCCc-------------
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-SVDP-------------  132 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------------  132 (551)
                      ....+...|.++-|..    .+...|.   ++...+.+|.++...|++++|..+|+++-.-- ..+.             
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            3445666777766554    3334455   45566899999999999999999999874321 1110             


Q ss_pred             -----hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-h----hHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713        133 -----KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-A----DSYYQRGQIYCLFGQYEEALRNLDKT  197 (551)
Q Consensus       133 -----~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~la~~~~~~~~~~~A~~~~~~~  197 (551)
                           ......|..+...+...+ .++.+++....+++..+.+ .    ..|..+-..+...|+|++|...+...
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence                 001233455666777778 8888888888888765433 2    25666777788888888887776543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.96  E-value=2.1  Score=44.38  Aligned_cols=259  Identities=8%  Similarity=0.023  Sum_probs=136.6

Q ss_pred             HHhhhcHHHHHHHHHHHhhcC-CCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC---C---CchhHHHHHHHH
Q psy12713         71 AFEHEDYLTAIRHCTEEIEST-SSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS---V---DPKIKVNAHIKR  142 (551)
Q Consensus        71 ~~~~g~~~~A~~~~~~~l~~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~~l  142 (551)
                      ....|+.++++..+.+.+... .++ ....-+++.+|.++...+  .+++..+...+....   .   ++.+...+-..+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            445677778888887777532 111 235667777777766555  468888877776432   1   233444566677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV  220 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  220 (551)
                      |.++...+ + +++.+.+...+..+...  ..+-+.+|.++...|+-+-....+..+.+..  +.......+..+-. ..
T Consensus       462 Gla~~GS~-~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGl-l~  536 (963)
T 4ady_A          462 GLAAMGSA-N-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLAL-IN  536 (963)
T ss_dssp             HHHSTTCC-C-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHH-HT
T ss_pred             HHHhcCCC-C-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHh-hh
Confidence            77777666 4 46677777777643321  1345567888888888766666666655432  22222222211110 11


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhcC
Q psy12713        221 PGDRERVEQSLKEFRNFVDTHSNVVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--LYVHRAMLMLQARG  294 (551)
Q Consensus       221 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~  294 (551)
                      +   |+.+.+....+.+.. .+ ++.    +...+|..|...|+...-...+..+..-..++..  +...+|.+  . .|
T Consensus       537 ~---g~~e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI--~-~g  608 (963)
T 4ady_A          537 Y---GRQELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFV--L-LR  608 (963)
T ss_dssp             T---TCGGGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--T-SS
T ss_pred             C---CChHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhh--c-cC
Confidence            2   444444444444333 22 222    3345677788889875444466665543222222  23333433  2 45


Q ss_pred             CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh--CC-HHHHHHHHHHhcccccCH
Q psy12713        295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR--GR-LEEAVKCFNKALPLARDE  347 (551)
Q Consensus       295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-~~~A~~~~~~a~~~~~~~  347 (551)
                      +.+.+...+....+  ..++.+.+..+.++-..  |+ ..+++..+.+... ++++
T Consensus       609 ~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~  661 (963)
T 4ady_A          609 DYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVD  661 (963)
T ss_dssp             SCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSH
T ss_pred             CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCH
Confidence            55444444432222  23455555444444333  22 2678888877754 4443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.49  E-value=9  Score=39.79  Aligned_cols=255  Identities=13%  Similarity=0.036  Sum_probs=138.0

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-------CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-------SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP  132 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  132 (551)
                      ...+++..|..+...+  .+++..+...+....       .......+-..+|.++...++ +++...+..++..+.  .
T Consensus       412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~--~  486 (963)
T 4ady_A          412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS--A  486 (963)
T ss_dssp             HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC--H
T ss_pred             HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC--H
Confidence            3455565665555544  478888888876543       111233466677877776665 567777777776432  2


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713        133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH  212 (551)
Q Consensus       133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  212 (551)
                      .....+-+.+|.++...| +-+.....+..+.+...+...-...+|..+...|+.+.+....+.....  .++...+  +
T Consensus       487 ~~~~~AalALGli~vGTg-n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRy--g  561 (963)
T 4ady_A          487 TSGEAAALGMGLCMLGTG-KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRY--G  561 (963)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHH--H
T ss_pred             HHHHHHHHHHhhhhcccC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHH--H
Confidence            333346667888888888 7766666666665543332222334444555677777666666655442  2333332  2


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--H
Q psy12713        213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM--L  290 (551)
Q Consensus       213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~  290 (551)
                      .++.....|...|+.......+..+.....++..-...+|......|+.+.+...+....+  ..++.+.+..+.++  .
T Consensus       562 aa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli  639 (963)
T 4ady_A          562 GAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIA  639 (963)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence            2222225566668865554566666654333343333444445556666544444443332  23455544433331  1


Q ss_pred             HhcCC-HHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhC
Q psy12713        291 QARGN-VDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRG  328 (551)
Q Consensus       291 ~~~~~-~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g  328 (551)
                      . .|+ ..+++..+.+... ++++   ..+...||.+-....
T Consensus       640 ~-aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          640 C-AGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             T-SSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred             c-cCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence            1 233 3678888888754 4432   234556666655443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.05  E-value=5  Score=43.55  Aligned_cols=164  Identities=8%  Similarity=-0.023  Sum_probs=85.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12713        144 VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD  223 (551)
Q Consensus       144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  223 (551)
                      ..+...+ .++-+..    .+...|.++...+.+|.++...|++++|..+|+++..--....             .....
T Consensus       820 ~~l~~~~-~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~-------------~l~~~  881 (1139)
T 4fhn_B          820 EKLFLFK-QYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT-------------SQFAV  881 (1139)
T ss_dssp             HHHHHHS-CTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC-------------CSCSS
T ss_pred             HHHHHhh-hHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc-------------hhhhh
Confidence            3344444 4444332    2234455555667777777777777777777776542211100             00000


Q ss_pred             hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHhcCCHHH
Q psy12713        224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NAS----LYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~~  298 (551)
                      ......    ...........+..|..+..++.+.|.++.+++..+.+++..+. +..    .|..+-..++. .|+|++
T Consensus       882 ~~~~~~----~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~-l~~ye~  956 (1139)
T 4fhn_B          882 LREFQE----IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA-AGKFDA  956 (1139)
T ss_dssp             HHHHHH----HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH-HCCSGG
T ss_pred             hccccc----ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-hCCHHH
Confidence            011000    00000111223455667777788888888888888888876543 321    45555555566 788888


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE  331 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  331 (551)
                      |...+...-... .....+..+....+..|..+
T Consensus       957 Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          957 AHVALMVLSTTP-LKKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             GGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChh
Confidence            877775543222 22455555555555655544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.81  E-value=0.35  Score=46.04  Aligned_cols=122  Identities=17%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             ChhHHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHhccCHHHHH----------HHHHHHHh-----cCC
Q psy12713        223 DRERVEQSLKEFRNFVD-----------THSNVVEACTLFAQVLVDQEDFDGAE----------EYFNRSIR-----VDP  276 (551)
Q Consensus       223 ~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~~~-----~~~  276 (551)
                      +.+++++|..+....+.           .++-...+|+.++.++...|+.....          ..+-.+++     .++
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            34556666555544431           12233566777777777777655421          12222222     222


Q ss_pred             CC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713        277 EN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       277 ~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      .. ...+..+-..|+. .+.+++|..+..++.  .|..       ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus       228 ~~qa~l~nllLRnYL~-~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          228 ETKAMLINLILRDFLN-NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CHHHHHHHHHHHHHHH-SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             chhHHHHHHHHHHHHc-cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            22 4456666777777 899999999999884  4432       4567788999999999999999999999987754

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.51  E-value=15  Score=32.62  Aligned_cols=83  Identities=13%  Similarity=-0.044  Sum_probs=48.6

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713        242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--GNVDEAIKLIEKAISIDKSCMFAYET  319 (551)
Q Consensus       242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  319 (551)
                      -.++..+..+|..+...|++.+|..+|-..   +.+++..+..+-.-+....  |.               |.....+..
T Consensus       131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~---------------~~e~dlf~~  192 (312)
T 2wpv_A          131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIE---------------DSTVAEFFS  192 (312)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCC---------------HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCC---------------cchHHHHHH
Confidence            357899999999999999999998887421   1112333332222222211  22               222333333


Q ss_pred             HH-HHHHHhCCHHHHHHHHHHhcc
Q psy12713        320 LG-TIEVQRGRLEEAVKCFNKALP  342 (551)
Q Consensus       320 l~-~~~~~~g~~~~A~~~~~~a~~  342 (551)
                      .+ ..|...|+...|...++...+
T Consensus       193 RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          193 RLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33 345677888888888776554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=86.76  E-value=5  Score=30.23  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF  337 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  337 (551)
                      .|+...-+.++-+.   +..+  -+..+|.-++-.+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+
T Consensus        74 C~NlKrVi~C~~~~---n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           74 CQNLKSVVECGVIN---NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             CSCTHHHHHHHHHT---TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcHHHHHHHHHHh---cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            34555555554332   2222  233444444444788888878877766666667888888888898899888888888


Q ss_pred             HHhccc
Q psy12713        338 NKALPL  343 (551)
Q Consensus       338 ~~a~~~  343 (551)
                      .+|-+.
T Consensus       149 ~~AC~k  154 (172)
T 1wy6_A          149 IEACKK  154 (172)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            888664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=82.54  E-value=0.00057  Score=63.45  Aligned_cols=235  Identities=13%  Similarity=0.081  Sum_probs=147.8

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      +.++.|...|...+..|...+|+..|-++  .+|.      .+.....+..+.|++++-+.+++-+-+.. .++.+... 
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps------~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDte-  121 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS------SYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETE-  121 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC------SSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHH-
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHH-
Confidence            36788999999999999999999877554  3444      34455566678899999999998887653 33444455 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                         +..+|.+.+ +..+-.+.+     ..|+.++ ....|.-++..|.|+.|.-.|..+-    +.    ..++      
T Consensus       122 ---Li~ayAk~~-rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~is----N~----akLA------  177 (624)
T 3lvg_A          122 ---LIFALAKTN-RLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVS----NF----GRLA------  177 (624)
T ss_dssp             ---HHHHHHTSC-SSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGSC----CC----TTTS------
T ss_pred             ---HHHHHHhhC-cHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhCc----cH----HHHH------
Confidence               888888888 755432222     1344333 4567888888999988877665432    22    2233      


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE  298 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  298 (551)
                      ..+..+|++..|++.-+++     +++.+|-.....+...+++.-|..+--..+- .++.-.-   +.. +++..|-+++
T Consensus       178 stLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~e---lv~-~YE~~G~f~E  247 (624)
T 3lvg_A          178 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEE---LIN-YYQDRGYFEE  247 (624)
T ss_dssp             SSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSG---GGS-SSSTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHH---HHH-HHHhCCCHHH
Confidence            5666678888888776654     4455666666677777777666555444332 2222111   111 2334666777


Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN  338 (551)
Q Consensus       299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  338 (551)
                      -+..++.++.+...+...+..||.+|.+- +.++-.++++
T Consensus       248 LIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlk  286 (624)
T 3lvg_A          248 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE  286 (624)
T ss_dssp             STTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            77777777666666666666666666432 3444444443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.32  E-value=31  Score=30.59  Aligned_cols=133  Identities=11%  Similarity=-0.077  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---CCCCch
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED---TSVDPK  133 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~  133 (551)
                      .++..+.+-...+..|+|=+|.+.++.+..+.-   .-....+.++.-+..+.+.|++..|.+...-.++.   ......
T Consensus        12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~   91 (312)
T 2wpv_A           12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD   91 (312)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence            456667777788888999999888887655421   10124556667777788888888877754443332   111111


Q ss_pred             hHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhc-------CCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713        134 IKVNAHIKRAVVHLHAASDFT-KAFADLDEAEKV-------DPNVADSYYQRGQIYCLFGQYEEALRNLD  195 (551)
Q Consensus       134 ~~~~~~~~la~~~~~~~~~~~-~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~  195 (551)
                        ....-.+..++.... .-+ .=..+.+++++.       .-.++..+..+|..+...|++.+|..+|-
T Consensus        92 --~~~~~rl~~l~~~~p-~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           92 --DISVARLVRLIAELD-PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             --HHHHHHHHHHHTTCC-TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHCC-CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence              112223444443322 111 112333333322       23468889999999999999999888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	551
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-23
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-22
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-21
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-15
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-12
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-10
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-12
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	9e-12
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-09
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-11
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-11
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.004
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-10
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	9e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	7e-05
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.002
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-04
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 6e-23
 Identities = 42/204 (20%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
             +A  +   A    ++A  +DPN  D+Y   G +      ++ A+    + ++L+PN  
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237

Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
           V       V ++         ++ ++  +R  ++   +  +A    A  L ++     AE
Sbjct: 238 VVHGNLACVYYEQ------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291

Query: 266 EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325
           + +N ++R+ P +A    + A +  + +GN++EA++L  KA+ +      A+  L ++  
Sbjct: 292 DCYNTALRLCPTHADSLNNLANI-KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 326 QRGRLEEAVKCFNKALPLARDEAE 349
           Q+G+L+EA+  + +A+ ++   A+
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (237), Expect = 5e-22
 Identities = 54/409 (13%), Positives = 126/409 (30%), Gaps = 62/409 (15%)

Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
            + A DF  A     +  + +P+          I+    + + +       I  NP    
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68

Query: 207 ARAQR----------------------------HFVVHKMIVPGDRERVEQSLKEFRNFV 238
           A +                                 ++          +E +++ + + +
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

Query: 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298
             + ++    +    +L      + A+  + ++I   P  A  + +    +  A+G +  
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC-VFNAQGEIWL 187

Query: 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRD 358
           AI   EKA+++D + + AY  LG +  +    + AV  + +AL L+ + A +        
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-------- 239

Query: 359 AAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKAD 418
                      +     V      I        + +           +      + +K  
Sbjct: 240 -----------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA--NALKEKGS 286

Query: 419 YTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKV 478
             +        + Y           +      N++ E G      +  +A     +A +V
Sbjct: 287 VAEAE------DCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKALEV 334

Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
            P  A ++     +    G+ +EAL +  + I ++P F  A +      
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (232), Expect = 2e-21
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
           A+A      V+    +   AI    + V    +DP   ++A+I    V   A   F +A 
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNF-LDAYINLGNVLKEA-RIFDRAV 223

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
           A    A  + PN A  +     +Y   G  + A+    + I L P+F  A       + +
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
                    V ++   +   +       ++    A +  +Q + + A   + +++ V PE
Sbjct: 284 K------GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
            A+ + + A + LQ +G + EA+   ++AI I  +   AY  +G    +  
Sbjct: 338 FAAAHSNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 46/277 (16%), Positives = 92/277 (33%), Gaps = 2/277 (0%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
           A       DF+ AE +  +  R +P+N  + +  + +       +D +      AI  + 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNP 64

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN 371
               AY  LG +  +RG+L+EA++ +  AL L  D  +     +    A   M+   +  
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSND 431
           +            +++   + +     +       K  +T       ++          +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 432 YEIIPGDPTKTIEESEKYGNLENESGQKHA-ASDFTKAFADLDEAEKVDPNVADSYYQRG 490
             +      K +     + +     G     A  F +A A    A  + PN A  +    
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
            +Y   G  + A+    + I L P+F  A        
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 14/225 (6%)

Query: 67  KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126
                    +   AI H  + +    +      A +    V        +A+    + + 
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALS 231

Query: 127 DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186
            +          H   A V  +       A      A ++ P+  D+Y          G 
Sbjct: 232 LSPNHA----VVHGNLACV-YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246
             EA    +  + L P           + +   +  ++  +E++++ +R  ++       
Sbjct: 287 VAEAEDCYNTALRLCPTHA------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291
           A +  A VL  Q     A  ++  +IR+ P  A  Y +    + +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 8/155 (5%)

Query: 64  LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
             + A   +E      AI      IE          A    A          +A +    
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
            +           N              +  +A     +A +V P  A ++     +   
Sbjct: 297 ALRLCPTHADSLNNLAN-----IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
            G+ +EAL +  + I ++P F  A +     + +M
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 3e-15
 Identities = 20/224 (8%), Positives = 59/224 (26%), Gaps = 35/224 (15%)

Query: 155 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR------ 208
           ++   L +AE +  ++ DS     +++      ++  +   K +  +  + + +      
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQDL 60

Query: 209 -----------------------AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV 245
                                           + +        Q L+E     +      
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
              +    +   Q       +  + S     ++    VH   +  + R    +A      
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDI-ARYRNQTSQAESYYRH 177

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
           A  +  S    Y  L  +   +G     +  + +++ +      
Sbjct: 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 15/229 (6%)

Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI-YSL 356
           ++ + + +A  +      +      +   R  L++    + K L    + A    +   L
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60

Query: 357 RDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDK 416
            + A        +   K + +P    +  N  L ++        +++         +  +
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 417 ADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY-----GNLENESGQKHAASDFTKAFAD 471
              +Q             I    + +     ++     G++     Q       ++A + 
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQ------TSQAESY 174

Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
              A ++ P+    Y Q   +    G +   +    ++IA+   F  A 
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 16/239 (6%)

Query: 98  ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
             ++L  A V+          + +         D +           +  HA  +     
Sbjct: 20  TDSKLGPAEVWTSRQALQDLYQKMLVT------DLEY-ALDKKVEQDLWNHAFKNQITTL 72

Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
               +                 +    G Y + L+ L     ++    V  +Q       
Sbjct: 73  QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG----- 127

Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
            I+   +      +K   +                 +   +     AE Y+  + ++ P 
Sbjct: 128 -IISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS 184

Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
           N   Y   A+L   ++G+    I    ++I++      A   L     +     + VK 
Sbjct: 185 NGQPYNQLAIL-ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 16/170 (9%), Positives = 52/170 (30%), Gaps = 11/170 (6%)

Query: 74  HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133
              Y   ++                +       +    + ++  ++  +          +
Sbjct: 99  SGFYTQLLQELCTVFNVDLPC---RVKSSQLGIISNKQTHTSAIVKPQSSSCS---YICQ 152

Query: 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 193
              +  +    +  +  +  ++A +    A ++ P+    Y Q   +    G +   +  
Sbjct: 153 ---HCLVHLGDIARYR-NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208

Query: 194 LDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF-RNFVDTHS 242
             ++IA+   F  A       + K +   D  + +  + +F + F+  H 
Sbjct: 209 YCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHG 258

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
           +     +A   L EA K  P  A       ++ C+ G +E A   L ++I L P +    
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
           +Q   +V        + R + +       V   +  +    +   + +  +D++   E  
Sbjct: 68  SQLRHLVKAA-----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 269 NRSIRVDPENASLYVHRAM 287
            +   +  E   L    + 
Sbjct: 123 LQIEELRQEKGFLANDTSF 141

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 3/137 (2%)

Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
           +++Q+L+     +          + F ++L    DF+ A+E   +SI++ PE        
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
             L+  A+   D A       +  +   +        + +     E+  +   +   L +
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 346 DEAELSHIYS---LRDA 359
           ++  L++  S   +RD 
Sbjct: 131 EKGFLANDTSFSDVRDI 147

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
            +  + +     A E    +I+  P++ASL      L L   G+ + A + + ++I +  
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFP 61

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352
             +     L  +       ++  +    A  L  +E     
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
           +     +A   L EA K  P  A       ++ C+ G +E A   L ++I L P +    
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 521 A 521
           +
Sbjct: 68  S 68

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
           + G + +A++L+ +AI           +   +    G  E A +   +++ L      L 
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLP 65

Query: 352 HIYSLRDAAIAQMKVCE 368
               LR    A     +
Sbjct: 66  GASQLRHLVKAAQARKD 82

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 9/245 (3%)

Query: 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
           Q    +  + Q++   ++    +     +R V++  +      A  D  +A  + P++ +
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLY-DSLGLRALARNDFSQALAIRPDMPE 72

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232
            +   G      G ++ A    D  + L+P ++ A   R   ++           + +  
Sbjct: 73  VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD------KLAQD 126

Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
           +   F     N               ++    E       + D E     +    L   +
Sbjct: 127 DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186

Query: 293 R-GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
               ++          S+ +        LG   +  G L+ A   F  A+          
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV-E 245

Query: 352 HIYSL 356
           H Y+L
Sbjct: 246 HRYAL 250

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 7/237 (2%)

Query: 290 LQARGNVDEAIKLIEKAISI----DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
           LQ     +  +  +E+ ++     D          G +    G    A   F++AL +  
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA 405
           D  E+ +   +                       + N     +         + +     
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128

Query: 406 DKGGKTVVMDKADYTQKMTSILNSNDYEI---IPGDPTKTIEESEKYGNLENESGQKHAA 462
               +    D         +    ++ +    +     K+ +E   +  +E   G     
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188

Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
           +   +  AD  +   +  +++++ +  G+ Y   G  + A       +A N +  V 
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
           L      D   A   Y+RG +Y   G    A  +  + +A+ P+            
Sbjct: 26  LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 7e-12
 Identities = 30/283 (10%), Positives = 65/283 (22%), Gaps = 17/283 (6%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
               + + D   A   F  +++ DP++   + +              AI  + + + +  
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKP 84

Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN 371
               A   L           +A +     L      A L                     
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSND 431
                S   +           +L   +         G    +  + D      +   S  
Sbjct: 145 SLLSDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 432 YEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 491
                         +    + E                A    A ++ P    S Y  G 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAV--------------AAYRRALELQPGYIRSRYNLGI 248

Query: 492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAEL 534
                G + EA+ +  + + +       R +   +  +  + L
Sbjct: 249 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 30/311 (9%), Positives = 72/311 (23%), Gaps = 29/311 (9%)

Query: 63  DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
               +  R  +  D   A+      ++    +     A     T      Q   AI  L 
Sbjct: 21  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALR 77

Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA----------DLDEAEKVDPNVAD 172
           + +E    +    +   +      L   +                      E        
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137

Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232
              +          + E        + L+P                ++       ++++ 
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVD 193

Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
            F   +    N           L +    + A   + R++ + P       +   +    
Sbjct: 194 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL-GISCIN 252

Query: 293 RGNVDEAIKLIEKAISIDKSCMFA-----------YETLGTIEVQRGRLEEAVKCFNKAL 341
            G   EA++   +A+++ +                + TL       G+ +       + L
Sbjct: 253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312

Query: 342 PLARDEAELSH 352
                   L  
Sbjct: 313 STLLTMFGLPQ 323

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 6/115 (5%)

Query: 432 YEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 491
           Y+    +P +   +  + G    + G      D   A    + A + DP   +++   G 
Sbjct: 8   YQFEEENPLRDHPQPFEEGLRRLQEG------DLPNAVLLFEAAVQQDPKHMEAWQYLGT 61

Query: 492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDEFMIPKI 546
                 Q   A+  L + + L P+   A       +T+   +  A        + 
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (155), Expect = 9e-12
 Identities = 44/331 (13%), Positives = 100/331 (30%), Gaps = 27/331 (8%)

Query: 61  ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNH--TKALARLLRATVYIFTSQSTKAI 118
           E + L +A+ A    +   A R     +E        ++ +A  +   V     + T+++
Sbjct: 13  EFNAL-RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 119 EDLTQLVE-DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP--------N 169
             + Q  +     D        + +    L A      A+   ++A ++           
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 131

Query: 170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HVARAQRHFVVHKMIVPGD 223
                  R Q+   + + +EA  +    I +  ++                + +  +   
Sbjct: 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 191

Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
           R ++ +      N       +  A  +         D   A  +   + + +  N     
Sbjct: 192 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251

Query: 284 HRAMLM---LQARGNVDEAIKLIEKAISIDKSCMF------AYETLGTIEVQRGRLEEAV 334
            +   +       G  + A  ++E+     +S             L  +  Q GR  +A 
Sbjct: 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 311

Query: 335 KCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
           +    AL LA     +SH     +A   Q++
Sbjct: 312 RVLLDALKLANRTGFISHFVIEGEAMAQQLR 342

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 35/275 (12%), Positives = 75/275 (27%), Gaps = 13/275 (4%)

Query: 270 RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-----MFAYETLGTIE 324
           + IR D  +A     RA + +   GN DEA +L + A+           + A   LG + 
Sbjct: 3   KDIREDTMHAEFNALRAQVAIN-DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 61

Query: 325 VQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNIT 384
             +G L  ++    +   +AR      +           +          +   ++  + 
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121

Query: 385 KNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE 444
             + L    + E    I          ++   A   +   S  +  +         +   
Sbjct: 122 NEQHLEQLPMHEFLVRIRA-------QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174

Query: 445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 504
            +             +A S   +    L   +     ++++   R   + + G    A  
Sbjct: 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234

Query: 505 NLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSD 539
            L  T       +     +          L  F  
Sbjct: 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 269

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 34/317 (10%), Positives = 82/317 (25%), Gaps = 41/317 (12%)

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIK 301
           E   L AQV ++  + D AE     ++   P         A  +L      +G +  ++ 
Sbjct: 13  EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 72

Query: 302 LIEKAISIDKSCM------FAYETLGTIEVQRGRLEEAVKCFNKALPLARDE-------- 347
           L+++   + +         ++      I   +G L+ A +   KA  L  ++        
Sbjct: 73  LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132

Query: 348 -----------------------AELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNIT 384
                                  A              Q++                N  
Sbjct: 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 192

Query: 385 KNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE 444
                    L          ++     V+  +    +   +    +  +    +      
Sbjct: 193 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252

Query: 445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 504
           +       +   G+   A    +   +   + ++  ++  +     Q+Y   G+  +A R
Sbjct: 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312

Query: 505 NLDKTIALNPNFHVARA 521
            L   + L         
Sbjct: 313 VLLDALKLANRTGFISH 329

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 12/180 (6%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
           A    ++G    +  +Y EA     + I  NP   V    R     KM  P         
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA---- 59

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
             + R  ++     V+A     Q  ++ E +D A     R+  +  E    +       L
Sbjct: 60  --DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117

Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
           +       A K    +I   +    +        +     E  ++   +      D+  +
Sbjct: 118 R------IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 22/154 (14%), Positives = 58/154 (37%), Gaps = 6/154 (3%)

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
            L     +  A   + R+I  +P  A  Y +RA+  L+ +           +A+ +D   
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-CRRALELDGQS 71

Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIK 373
           + A+  LG  +++    +EA+    +A  LA+++       +  D   + +++ ++    
Sbjct: 72  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-----NFGDDIPSALRIAKKKRWN 126

Query: 374 KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK 407
                R    ++      + +    +  +    +
Sbjct: 127 SIEERRIHQESELHSYLTRLIAAERERELEECQR 160

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 19/167 (11%), Positives = 53/167 (31%), Gaps = 9/167 (5%)

Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
           +A     + +    +      N  +    +     +           A ++D     +++
Sbjct: 22  EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC-----RRALELDGQSVKAHF 76

Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
             GQ       Y+EA+ NL +  +L     +          ++     +++   S++E R
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----KKKRWNSIEERR 132

Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
              ++  +      + A+   + E+     E       +  + A + 
Sbjct: 133 IHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 477 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
           ++D     +++  GQ       Y+EA+ NL +  +L     +    
Sbjct: 66  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 5e-11
 Identities = 41/291 (14%), Positives = 103/291 (35%), Gaps = 21/291 (7%)

Query: 119 EDLTQLVEDTSVDP--KIKVNAHIKRAVVHLHAA----SDFTKAFADLDEAEKVDPNVAD 172
            D+  + ++   +P  +I  +   +    +  A         +AF    +A +++     
Sbjct: 19  ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 78

Query: 173 SYYQRGQIYC-LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231
            ++ R  +   L     E +  +   I   P  +     R  +V  +  P       Q L
Sbjct: 79  VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP------SQEL 132

Query: 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291
           +   + ++  +    A      V+ + + +D   +Y ++ ++ D  N S++  R  ++  
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 192

Query: 292 A-----RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
                 R  ++  ++   + I +      A+  L  I   RG L +     N+ L L   
Sbjct: 193 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPS 251

Query: 347 EAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN 397
            +    I  L D     ++   + + K+ +  ++  + +        +R+ 
Sbjct: 252 HSSPYLIAFLVDIYEDMLE--NQCDNKEDILNKALELCEILAKEKDTIRKE 300

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 24/250 (9%), Positives = 65/250 (26%), Gaps = 7/250 (2%)

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
           +    F  VL   E  + A +    +I ++  N +++  R +L+   + ++ E +  I  
Sbjct: 44  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103

Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
            I         +     +        + ++     L                        
Sbjct: 104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD 163

Query: 366 V-CERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT 424
              +  +   K   R+ ++       I           R   +      ++         
Sbjct: 164 NELQYVDQLLKEDVRNNSVWNQRYFVISNT---TGYNDRAVLEREVQYTLEMIKLVPHNE 220

Query: 425 SILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD 484
           S  N     +     +K      +  +L+      +  +     + D+ E +    +  +
Sbjct: 221 SAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ---CDNKE 277

Query: 485 SYYQRGQIYC 494
               +    C
Sbjct: 278 DILNKALELC 287

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 8/47 (17%), Positives = 12/47 (25%)

Query: 477 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
                  D Y     +     + E A +     I LN   +     R
Sbjct: 37  IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR 83

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 19/283 (6%)

Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML---------MLQARGNV 296
            A     Q     E  +   E  ++ +  +P+ A+L+  R  +           ++   V
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR--LEEAVKCFNKALPLARDEAELSHIY 354
              +  +E  + ++      +     +  +         ++   + L             
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 355 SLRDAAIAQMKVCE--RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV 412
               A  A     E    +     +  + +        + QL    D     +   G+  
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD-----SGPQGRLP 204

Query: 413 VMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAA-SDFTKAFAD 471
                   + + +   ++  +       + +    +       S +K        ++  +
Sbjct: 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264

Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
           L E E  +     +     +        +E L+      A++P
Sbjct: 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (134), Expect = 4e-09
 Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 6/217 (2%)

Query: 186 QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE----FRNFVDTH 241
             E  L    + +  NP+F      R  V+  +      E     +K       + +  +
Sbjct: 44  LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103

Query: 242 SNVVEACTLFAQVLVDQEDFDGAEE--YFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299
                       +L    + + A E     R +  D  N   + +R  +  QA     E 
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163

Query: 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
           +   +  I+ + S   ++     +  Q     ++         +   E EL       D 
Sbjct: 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223

Query: 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
                    R+ + +        ++  +   ++   E
Sbjct: 224 NDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELE 260

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 26/258 (10%), Positives = 65/258 (25%), Gaps = 45/258 (17%)

Query: 133 KIKVNAHIKRAVVHLHAASDFT-KAFADLDEAEKVDPNVADSYYQRGQIYC--------- 182
           K+K+     +AV     A +          +    +P+ A  +  R ++           
Sbjct: 24  KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE 83

Query: 183 -LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH 241
                 +  L  L+  + +NP  +     R +++ ++          + L+    F++  
Sbjct: 84  ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEAD 139

Query: 242 SNVVEA-CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM----------- 289
                                     + +  I  +  N S + +R+ L+           
Sbjct: 140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199

Query: 290 ------------------LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
                                    D++     + +      +F  E             
Sbjct: 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSEL 259

Query: 332 EAVKCFNKALPLARDEAE 349
           E+ K   +  P  +    
Sbjct: 260 ESCKELQELEPENKWCLL 277

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 7e-06
 Identities = 30/249 (12%), Positives = 56/249 (22%), Gaps = 28/249 (11%)

Query: 62  LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDL 121
           L  L   K   E    + A     E     +                +      + +E  
Sbjct: 73  LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132

Query: 122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181
            + +E    D +       +R V    AA    +  A  D     + +   S++ R  + 
Sbjct: 133 ARFLE---ADERNFHCWDYRRFVA-AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 188

Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV-------------- 227
                  ++         +            F            R               
Sbjct: 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS 248

Query: 228 ----------EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
                      +S KE +     +   +    L  + L          +YF+    VDP 
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308

Query: 278 NASLYVHRA 286
            A+      
Sbjct: 309 RAAYLDDLR 317

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 14/183 (7%), Positives = 39/183 (21%), Gaps = 5/183 (2%)

Query: 24  KQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRA----FEHEDYLT 79
            + ++   +    D                     + EL             +    Y +
Sbjct: 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185

Query: 80  AIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139
            +         +          LL+    +  +  T   +          +     +   
Sbjct: 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245

Query: 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199
                          ++  +L E E  +     +     +        +E L+      A
Sbjct: 246 ELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304

Query: 200 LNP 202
           ++P
Sbjct: 305 VDP 307

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 1/112 (0%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQ 229
           A    + G        ++ AL++ DK   L+P        +  V  +       RE  E+
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
           +++  R   + +  + +A          +E +  A  ++N+S+        L
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
               ++DFD A ++++++  +DP N +   ++A +  + +G+ ++  +L EKAI + +  
Sbjct: 13  DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN 71

Query: 314 -------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
                    AY  +G    +  + ++A+  +NK+L   R    L         
Sbjct: 72  REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH--RAMLMLQARGNVDEAIKLIEKAISI 309
              LV  ED    E+ F         + S        ++  +   ++ + I L+E+ +  
Sbjct: 6   LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK 65

Query: 310 DKSCMF--AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
                       L     +    E+A+K     L       +   +  L D A+ +
Sbjct: 66  GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 9/104 (8%), Positives = 30/104 (28%), Gaps = 1/104 (0%)

Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
               +  +      A        + +  + + +     D  +    L+E           
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQ 71

Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
            +     A      ++++ A +Y    ++ +P+N        ++
Sbjct: 72  RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 26/176 (14%)

Query: 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
           V      D+  A   LD    V    +   +  G +Y +     EA +   ++I  + + 
Sbjct: 13  VLAADKKDWKGA---LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 69

Query: 205 HVARAQRHFVVHKMIVPGD-RERVEQSLKEFRNF---------VDTHSNVVEACTLFAQV 254
            VA  QR  + ++        + ++++L + R           +       E     A +
Sbjct: 70  AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 129

Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
              +E++  AEE    +  +  E                  +D+A++ + K    +
Sbjct: 130 YAKKEEWKKAEEQLALATSMKSE-------------PRHSKIDKAMECVWKQKLYE 172

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 15/178 (8%), Positives = 44/178 (24%), Gaps = 28/178 (15%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
           A S +  G +      ++ AL         +          +            + + ++
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYT---------ILKNMTEA 55

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
            K F   ++   ++  A      +    E +D A +    ++     N            
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ----------- 104

Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
                    I      +            +  +  ++   ++A +    A  +  +  
Sbjct: 105 --------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 17/153 (11%)

Query: 62  LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDL 121
           + L ++   A + +D+  A+   +   +  S              +Y      T+A +  
Sbjct: 6   ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFN------IGCMYTILKNMTEAEKAF 59

Query: 122 TQLVEDTSVDPKIKVNAHIKRAVVHLH--AASDFTKAFADLDEAEKVD---------PNV 170
           T+ +              +       +  A  D  +A   L   + +D            
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 119

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
            +  Y    +Y    ++++A   L    ++   
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
            +   ++G      G  ++AL+   + I L+P+ HV  + R     K             
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE---- 58

Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
             +    VD   +  +  +  A  L     F+ A+  +   ++ +  N    +   +  +
Sbjct: 59  --DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ--LKEGLQNM 114

Query: 291 QAR 293
           +AR
Sbjct: 115 EAR 117

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 34/269 (12%), Positives = 65/269 (24%), Gaps = 64/269 (23%)

Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
               +KRA      +S F K F+  D + K +   AD   Q   IY L  +   A  +  
Sbjct: 4   PVELLKRAEKKGVPSSGFMKLFSGSD-SYKFE-EAADLCVQAATIYRLRKELNLAGDSFL 61

Query: 196 KTIALNPNF------------------------------------------------HVA 207
           K                                                           
Sbjct: 62  KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121

Query: 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267
                            +  E + + +        +        A +      +  A + 
Sbjct: 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC-ADLKALDGQYIEASDI 180

Query: 268 FNRSIRVDPENASL------YVHRAMLMLQARGNVDEAIKLIEKAISIDKS------CMF 315
           +++ I+    N         Y  +  L   A  +   A + +++  S D +        F
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

Query: 316 AYETLGTIEVQ-RGRLEEAVKCFNKALPL 343
               +  +      +L E  K F+  + L
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
           +    ++        + +   +  L GQY EA     K I  +    +++        K 
Sbjct: 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205

Query: 219 IV--------PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270
            +              +++   E  NF D+  +      + A    D E      + F+ 
Sbjct: 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265

Query: 271 SIRVDPENASL 281
            +R+D    ++
Sbjct: 266 FMRLDKWKITI 276

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 36/265 (13%), Positives = 73/265 (27%), Gaps = 26/265 (9%)

Query: 263 GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF------A 316
           G  + F+ S     E A+    +A  + + R  ++ A     KA    K           
Sbjct: 20  GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNT 79

Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376
           Y          G    AV     A+ +     +     + +      ++           
Sbjct: 80  YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY----- 134

Query: 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIP 436
                      +LA +   ++  + +          +        + + I +    ++I 
Sbjct: 135 ----AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS----KLIK 186

Query: 437 GDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL- 495
                 + +         +   + AA+D   A   L E +  DPN ADS         + 
Sbjct: 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246

Query: 496 ------FGQYEEALRNLDKTIALNP 514
                   Q  E  +  D  + L+ 
Sbjct: 247 AVNEGDSEQLSEHCKEFDNFMRLDK 271

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 143 AVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
            ++     +D       L +  K       +  Y         G+Y  A R +D      
Sbjct: 44  GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103

Query: 202 PNFHVARAQRHFVVHKM 218
            N     A +  V  K+
Sbjct: 104 RNNKQVGALKSMVEDKI 120

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 460 HAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 518
              +D       L +  K       +  Y         G+Y  A R +D       N   
Sbjct: 49  TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108

Query: 519 ARA 521
             A
Sbjct: 109 VGA 111

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 22/159 (13%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV--- 215
           +++  EK++   +    +RG +Y   G+Y++AL    K ++          +        
Sbjct: 3   EMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 216 ------HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
                 +  +     +    +++     ++  SN  +  +   +  +   DF+ A   F 
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 270 RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
           + +++ P N +     A+   + R  +    KL      
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 28/177 (15%)

Query: 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
           ++D  EK++   A    ++G +Y   G+Y +A+    K ++     +    +        
Sbjct: 5   EMDTKEKLE--QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES- 61

Query: 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
                              +    N        A   +   ++  A E  ++++ +D  N
Sbjct: 62  -----------------FLLAAFLN-------LAMCYLKLREYTKAVECCDKALGLDSAN 97

Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335
                 R           + A    EK + ++     A   +   + +     E  +
Sbjct: 98  EKGLYRRGE-AQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 27/254 (10%)

Query: 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ-------------ARGNVDEAIKLI 303
                      + + + V   +  ++   A  + Q             A+   DEA  + 
Sbjct: 28  QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87

Query: 304 EKAISI-DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIA 362
           E+AIS   K  M  Y      E  R + E+    +N+ L +   +  L +I  ++ A  A
Sbjct: 88  ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147

Query: 363 QMKVCERYNIKK--KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYT 420
           +     R   KK  + +    ++     L      ++  +  +  + G K          
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207

Query: 421 QKMTSILNSNDYEII-----------PGDPTKTIEESEKYGNLENESGQKHAASDFTKAF 469
             +  + + N+                  P K+ E   ++   E+  G   +     K  
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267

Query: 470 ADLDEAEKVDPNVA 483
                 E      A
Sbjct: 268 FTAFREEYEGKETA 281

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	551
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.6
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.53
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.45
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.15
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.93
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.3
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.99
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.29
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.46
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	87.08
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.92

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=318.56  Aligned_cols=352  Identities=21%  Similarity=0.268  Sum_probs=279.0

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713         65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV  144 (551)
Q Consensus        65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  144 (551)
                      +..|..+++.|+|++|+..|+++++.+|+   ++.++..+|.++...|++++|+..++++++.+|++    ..++..+|.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~   75 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGN   75 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence            56899999999999999999999999998   89999999999999999999999999999999998    456777999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh----------------------------------CCHHHH
Q psy12713        145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF----------------------------------GQYEEA  190 (551)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------------------------~~~~~A  190 (551)
                      ++...| ++++|+..+..+....|.........+......                                  +....+
T Consensus        76 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (388)
T d1w3ba_          76 VYKERG-QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             Hhhhhc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence            999999 999999999999999888766555555444444                                  445555


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713        191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR  270 (551)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  270 (551)
                      ...+.+.+...|+....+..++..+...      |++++|...+++++..+|+++.++..+|.++...|++++|+..+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  228 (388)
T d1w3ba_         155 KACYLKAIETQPNFAVAWSNLGCVFNAQ------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHHHhhccCcchhHHHHhhccccccc------CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH
Confidence            5566666666666666666666555544      6677777777777777777777777777777777777777777777


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      +....|..+..+..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...
T Consensus       229 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  307 (388)
T d1w3ba_         229 ALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHhhhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh
Confidence            776666666666667766555 6777777777777777777777777777777777777777777777666666665443


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713        351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN  430 (551)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (551)
                      ...+                                                                            
T Consensus       308 ~~~l----------------------------------------------------------------------------  311 (388)
T d1w3ba_         308 LNNL----------------------------------------------------------------------------  311 (388)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             hhHH----------------------------------------------------------------------------
Confidence            2222                                                                            


Q ss_pred             CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713        431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  510 (551)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  510 (551)
                                               +..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|++++
T Consensus       312 -------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         312 -------------------------ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             -------------------------HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                     1224556899999999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHhhh
Q psy12713        511 ALNPNFHVARAQRHFVWTSTLA  532 (551)
Q Consensus       511 ~~~p~~~~a~~~l~~~~~~~~~  532 (551)
                      +++|+++.++.++|.+|.++||
T Consensus       367 ~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         367 RISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=274.93  Aligned_cols=327  Identities=20%  Similarity=0.202  Sum_probs=297.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH--
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN--  137 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--  137 (551)
                      ++..++..|.+++..|++++|+..|+++++.+|.   ++.++..+|.++..+|++++|+..+..+....|........  
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA  108 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence            5788999999999999999999999999999999   89999999999999999999999999999988766432211  


Q ss_pred             ----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q psy12713        138 ----------------------------AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE  189 (551)
Q Consensus       138 ----------------------------~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  189 (551)
                                                  .....+......+ ....+...+.+.+...|+++.++..+|.++...|++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  187 (388)
T d1w3ba_         109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG-RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL  187 (388)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-hhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHH
Confidence                                        2233445555566 78888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713        190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN  269 (551)
Q Consensus       190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  269 (551)
                      |...++++++.+|++..++..+|.++...      |++++|+..++++....|..+..+..+|.++...|++++|+..|+
T Consensus       188 A~~~~~~al~~~p~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         188 AIHHFEKAVTLDPNFLDAYINLGNVLKEA------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTT------TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHhhhhhcc------ccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999887777      999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        270 RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      ++++.+|+++.++..+|.++.. .|++++|+..+++++...|.+...+..+|.++...|++++|+..|+++++++|++..
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  340 (388)
T d1w3ba_         262 RAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999777 999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhcc
Q psy12713        350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS  429 (551)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (551)
                      ++..++                                                                          
T Consensus       341 ~~~~la--------------------------------------------------------------------------  346 (388)
T d1w3ba_         341 AHSNLA--------------------------------------------------------------------------  346 (388)
T ss_dssp             HHHHHH--------------------------------------------------------------------------
T ss_pred             HHHHHH--------------------------------------------------------------------------
Confidence            543322                                                                          


Q ss_pred             CCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcC
Q psy12713        430 NDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ  498 (551)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  498 (551)
                                                 ..+...|++++|+..|+++++++|++++++.++|.+|.++||
T Consensus       347 ---------------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         347 ---------------------------SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             ---------------------------HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             ---------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                       125556999999999999999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-28  Score=224.71  Aligned_cols=260  Identities=15%  Similarity=0.079  Sum_probs=206.2

Q ss_pred             CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713         57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV  136 (551)
Q Consensus        57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  136 (551)
                      +..+....|.+|..++..|++++|+..|+++++.+|.   ++.+|..+|.++...|++++|+..+.++++++|++.    
T Consensus        15 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----   87 (323)
T d1fcha_          15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ----   87 (323)
T ss_dssp             TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred             CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc----
Confidence            3335566678888888888888888888888888887   888888888888888888888888888888888774    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      ..+..+|.++...| ++++|+..+++++...|................                   .............
T Consensus        88 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~  147 (323)
T d1fcha_          88 TALMALAVSFTNES-LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLL  147 (323)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHH
T ss_pred             cccccccccccccc-cccccccchhhHHHhccchHHHHHhhhhhhhhc-------------------ccccchhhHHHHH
Confidence            45566888888888 888888888888888887654332211110000                   0000000111112


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG  294 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  294 (551)
                      ..      +.+.+|+..+.+++..+|+.  +.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|
T Consensus       148 ~~------~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g  220 (323)
T d1fcha_         148 SD------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN  220 (323)
T ss_dssp             HH------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             Hh------hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccc-cc
Confidence            22      78899999999999998874  67889999999999999999999999999999999999999999777 99


Q ss_pred             CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713        295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL  350 (551)
Q Consensus       295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  350 (551)
                      ++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...
T Consensus       221 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            99999999999999999999999999999999999999999999999999987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-28  Score=225.34  Aligned_cols=243  Identities=13%  Similarity=0.066  Sum_probs=155.9

Q ss_pred             CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713         58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN  137 (551)
Q Consensus        58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  137 (551)
                      ..++..++.+|.++...|++++|+..|.++++.+|+   +..++..+|.++...|++++|+..+++++...|........
T Consensus        50 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  126 (323)
T d1fcha_          50 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  126 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---cccccccccccccccccccccccchhhHHHhccchHHHHHh
Confidence            347899999999999999999999999999999999   89999999999999999999999999999999986543211


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVV  215 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~~  215 (551)
                      ..  ........+                      ........+...+.+.+|+..+.+++..+|+.  +.++..+|.++
T Consensus       127 ~~--~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         127 AE--EGAGGAGLG----------------------PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             --------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             hh--hhhhhcccc----------------------cchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            00  000000000                      00000111223344455555555555555542  33444555555


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      ...      |++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|+
T Consensus       183 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~  255 (323)
T d1fcha_         183 NLS------GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGA  255 (323)
T ss_dssp             HHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHH------HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCC
Confidence            444      6666666666666666666666666666666666666666666666666666666666666666555 666


Q ss_pred             HHHHHHHHHHHHhcCcCCHH-----------HHHHHHHHHHHhCCHHHHH
Q psy12713        296 VDEAIKLIEKAISIDKSCMF-----------AYETLGTIEVQRGRLEEAV  334 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~  334 (551)
                      +++|+..|+++++++|++..           +|..++.++...|+.+.+.
T Consensus       256 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666665543           3344555555555554433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-24  Score=193.36  Aligned_cols=208  Identities=13%  Similarity=0.140  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-chHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ-STKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+++...|..+...+.+++|+..++++++.+|.   +..+|..+|.++...|. +++|+..+++++..+|++    ..+|
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~----~~a~  115 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVW  115 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----hhHH
Confidence            444445555666666666666666666666666   66666666666666553 566666666666666666    3355


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      ..+|.++..+| ++++|+..++++++.+|++..+|..+|.++...|++++|+.+++++++++|.+..+|..++.++....
T Consensus       116 ~~~~~~~~~l~-~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~  194 (315)
T d2h6fa1         116 HHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  194 (315)
T ss_dssp             HHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHhhc-cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence            55666666666 66666666666666666666666666666666666666666666666666666666666665555444


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713        220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE  277 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  277 (551)
                      .+...+.+++|+..+.+++..+|++..+|..++.++... ..+++...+++++++.|+
T Consensus       195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred             ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence            445555566666666666666666666666665554332 245555555555555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-23  Score=188.69  Aligned_cols=252  Identities=13%  Similarity=0.102  Sum_probs=217.2

Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713         88 IESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD  167 (551)
Q Consensus        88 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~  167 (551)
                      +..+|+   ..+++..+|.++.+.+.+++|+..++++++++|++    ..+|..+|.++...|.++++|+..++++++.+
T Consensus        36 I~~~p~---~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~----~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~  108 (315)
T d2h6fa1          36 IIYSDK---FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  108 (315)
T ss_dssp             ECCCHH---HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             cccCHH---HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC----hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence            556676   89999999999999999999999999999999999    56788899999998725999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713        168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA  247 (551)
Q Consensus       168 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  247 (551)
                      |++..+|..+|.++..+|++++|+..+.++++++|++..+|..+|.++...      |++++|+..++++++.+|.+..+
T Consensus       109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~------~~~~~Al~~~~~al~~~p~n~~a  182 (315)
T d2h6fa1         109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF------KLWDNELQYVDQLLKEDVRNNSV  182 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCCTTHHHHHHHHHHHCTTCHHH
T ss_pred             HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHCCccHHH
Confidence            999999999999999999999999999999999999999999999999888      99999999999999999999999


Q ss_pred             HHHHHHHHHhccC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHHHHH
Q psy12713        248 CTLFAQVLVDQED------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYET  319 (551)
Q Consensus       248 ~~~la~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  319 (551)
                      |..+|.++...+.      +++|+..+.++++.+|++..+|..++.+ +. ....+++...++++++..|+.  +.++..
T Consensus       183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l-l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (315)
T d2h6fa1         183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI-LQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAF  260 (315)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH-HT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHH-HH-hcChHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence            9999999988776      6799999999999999999999999988 55 455788999999998887764  566677


Q ss_pred             HHHHHHHh--CCHHHHHHHHHHhc--------ccccCHHHHHHHH
Q psy12713        320 LGTIEVQR--GRLEEAVKCFNKAL--------PLARDEAELSHIY  354 (551)
Q Consensus       320 l~~~~~~~--g~~~~A~~~~~~a~--------~~~~~~~~~~~~~  354 (551)
                      ++.++...  ++.+.+...+++++        +.+|-....|..+
T Consensus       261 l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~  305 (315)
T d2h6fa1         261 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI  305 (315)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            78777543  44444444444443        3455544444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.4e-24  Score=198.53  Aligned_cols=274  Identities=10%  Similarity=-0.025  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713        153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK  232 (551)
Q Consensus       153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  232 (551)
                      .++|+..+++++..+|++..+|..++.++...+...                              ..+...|++++|+.
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~------------------------------~~~~~~~~~~~al~   94 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK------------------------------SPEESAALVKAELG   94 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS------------------------------CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhc------------------------------chHHHHHHHHHHHH
Confidence            356666666666666666666665555544332210                              11112377778888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhccC--HHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713        233 EFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPENASLYV-HRAMLMLQARGNVDEAIKLIEKAISI  309 (551)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~A~~~~~~~~~~  309 (551)
                      .++++++.+|+++.+|..+|.++...++  +++|+..++++++.+|.+..++. ..|.+ +...+.+++|+..++++++.
T Consensus        95 ~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1          95 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA-AQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHH-HHhccccHHHHHHHHHHHHc
Confidence            8888888888888888888877777654  67888888888888888777764 44455 33378888888888888888


Q ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHH
Q psy12713        310 DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKL  389 (551)
Q Consensus       310 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (551)
                      +|.+..+|..+|.++...|++++|...+++++.+.|............             .  + ...    ....   
T Consensus       174 ~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------------~--~-~~~----a~~~---  230 (334)
T d1dcea1         174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------------D--P-NDQ----SAWF---  230 (334)
T ss_dssp             TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-------------C--S-SCS----HHHH---
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHh-------------c--c-hhH----HHHH---
Confidence            888888888888888888888888777777777766654432221100             0  0 000    0000   


Q ss_pred             HHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch-hhhchhhhhcChhHH
Q psy12713        390 AIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE-NESGQKHAASDFTKA  468 (551)
Q Consensus       390 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A  468 (551)
                                                   |..                    .+...+.....+ ..+..+...|++.+|
T Consensus       231 -----------------------------~~~--------------------~l~~~~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         231 -----------------------------YHR--------------------WLLGRAEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             -----------------------------HHH--------------------HHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             -----------------------------HHH--------------------HHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence                                         000                    000001111111 222235567899999


Q ss_pred             HHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713        469 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS  529 (551)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  529 (551)
                      +..+.++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++...|..++..+..
T Consensus       262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999888774

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.8e-23  Score=193.62  Aligned_cols=263  Identities=11%  Similarity=-0.030  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC----------CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS----------QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      .++|+.+++++++.+|+   +..+|..++.++...+          ++++|+.+++++++.+|+++.    ++..+|.++
T Consensus        45 ~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~----~~~~~~~~~  117 (334)
T d1dcea1          45 DESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLL  117 (334)
T ss_dssp             SHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH----HHHHhhHHH
Confidence            48999999999999999   8888887777766544          478999999999999999954    556688888


Q ss_pred             HHhcC-CHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713        147 LHAAS-DFTKAFADLDEAEKVDPNVADSY-YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR  224 (551)
Q Consensus       147 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (551)
                      ...+. ++++|+..+++++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..++..+|.++...      
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~------  191 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL------  191 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH------
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------
Confidence            77761 48999999999999999998876 56788999999999999999999999999999999999998888      


Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |++++|+..+.+++...|.....+    ..+...+..+++...+.+++...|.+...+..++.++.. .|++.+|+..+.
T Consensus       192 ~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~  266 (334)
T d1dcea1         192 HPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV-LQSELESCKELQ  266 (334)
T ss_dssp             SCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH-HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            888888888888888877665443    345566888899999999999999999999999999776 899999999999


Q ss_pred             HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713        305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR  357 (551)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  357 (551)
                      +++..+|.+..++..+|.++...|++++|+++|+++++++|.....+..+...
T Consensus       267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877766444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-22  Score=177.80  Aligned_cols=230  Identities=14%  Similarity=0.123  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHS----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI  300 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  300 (551)
                      .+.+.++..+++++...+    ....+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++.. .|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHhh
Confidence            344555555555554332    2234666666666666666666666666666666666666666666555 66666666


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcch
Q psy12713        301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRS  380 (551)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (551)
                      ..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++....................             
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-------------  158 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK-------------  158 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHH-------------
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHH-------------
Confidence            6666666666666666666666666666666666666666666666554332222211100000000             


Q ss_pred             hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhh
Q psy12713        381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKH  460 (551)
Q Consensus       381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (551)
                              ..+......                                    ..+..+        .........+...
T Consensus       159 --------~~~~~~~~~------------------------------------~~~~~~--------~~~~~~~~~~~~~  186 (259)
T d1xnfa_         159 --------EVLKQHFEK------------------------------------SDKEQW--------GWNIVEFYLGNIS  186 (259)
T ss_dssp             --------HHHHHHHHH------------------------------------SCCCST--------HHHHHHHHTTSSC
T ss_pred             --------HHHHHHhhc------------------------------------cchhhh--------hhhHHHHHHHHHH
Confidence                    000000000                                    000000        0000000111112


Q ss_pred             hhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713        461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR  520 (551)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  520 (551)
                      ..+.++.+...+.......|..+.+++.+|.+|...|++++|+.+|+++++.+|++...+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            234577777778888888888899999999999999999999999999999999886544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.7e-22  Score=177.72  Aligned_cols=227  Identities=14%  Similarity=0.075  Sum_probs=116.4

Q ss_pred             hcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713         75 EDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF  153 (551)
Q Consensus        75 g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  153 (551)
                      ++.+.|+..+++++...+.. +..+.+++.+|.+|...|++++|+..|++++.++|++    ..++..+|.++...| ++
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g-~~   87 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAG-NF   87 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHH-HH
Confidence            44455555555555443322 3344555555555555555555555555555555555    223444555555555 55


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy12713        154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE  233 (551)
Q Consensus       154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  233 (551)
                      ++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|.+.....                        
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------------  143 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL------------------------  143 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------------------
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH------------------------
Confidence            55555555555555555555555555555555555555555555555555544443                        


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcC
Q psy12713        234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ---ARGNVDEAIKLIEKAISID  310 (551)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~~~~~~  310 (551)
                                      .++..+...+..+.+...........+.... + .+...+..   ..+..+.+...+.......
T Consensus       144 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
T d1xnfa_         144 ----------------WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-W-NIVEFYLGNISEQTLMERLKADATDNTSLA  205 (259)
T ss_dssp             ----------------HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred             ----------------HHHHHHHHhhhHHHHHHHHHHhhccchhhhh-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence                            3343333333333333333333332222211 0 11111110   0222344444444445555


Q ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       311 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      |....+++.+|.++...|++++|+.+|++++..+|++.
T Consensus       206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         206 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            55666777777777777777777777777777777653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=7.5e-19  Score=164.22  Aligned_cols=280  Identities=13%  Similarity=0.073  Sum_probs=230.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIK  135 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~  135 (551)
                      .++....+|..++..|++++|+..++++++..|.+  +....++..+|.++...|++++|+..+++++...+..  ....
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            45667778999999999999999999999999874  2335688999999999999999999999999875433  3344


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---
Q psy12713        136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN--------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---  204 (551)
Q Consensus       136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---  204 (551)
                      ..++..++.++...| ++..|...+.+++...+.        ....+..+|.++...|+++.+...+.++....+..   
T Consensus        91 ~~~~~~~~~~~~~~~-~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          91 LWSLIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence            567888999999999 999999999999875321        23467789999999999999999999999876643   


Q ss_pred             --HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713        205 --HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD  275 (551)
Q Consensus       205 --~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  275 (551)
                        .......+..+...      +++..+...+.++....+.       ...++...+.++...|++++|...+++++...
T Consensus       170 ~~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLAR------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             GGHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred             hHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence              33445555555555      8899999998888775432       24567788999999999999999999999887


Q ss_pred             CCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713        276 PEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISI------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR  345 (551)
Q Consensus       276 ~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  345 (551)
                      |.+    ...+..+|.+++. .|++++|...+++++..      .|....++..+|.++...|++++|++.+++++++.+
T Consensus       244 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQIL-LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            765    3456778999777 99999999999999854      355577899999999999999999999999998865


Q ss_pred             CH
Q psy12713        346 DE  347 (551)
Q Consensus       346 ~~  347 (551)
                      ..
T Consensus       323 ~~  324 (366)
T d1hz4a_         323 RT  324 (366)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.5e-18  Score=159.58  Aligned_cols=289  Identities=17%  Similarity=0.096  Sum_probs=202.0

Q ss_pred             hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----
Q psy12713         96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----  170 (551)
Q Consensus        96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----  170 (551)
                      ..++....+|.++...|++++|+..+++++...|.++. ....++..+|.++...| ++++|+..+++++...+..    
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhcchH
Confidence            36788888999999999999999999999999887654 33457888999999999 9999999999998865433    


Q ss_pred             --hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713        171 --ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC  248 (551)
Q Consensus       171 --~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  248 (551)
                        ..++..++.++...|++..|...+.+++.+.+....                                ...+.....+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--------------------------------~~~~~~~~~~  136 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL--------------------------------EQLPMHEFLV  136 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------------------TTSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc--------------------------------chhhHHHHHH
Confidence              456778899999999999999999988765321100                                0011123344


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC-------CHHH
Q psy12713        249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-------CMFA  316 (551)
Q Consensus       249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~  316 (551)
                      ..+|.++...|+++.|...+.+++...+..     ...+...+..+.. .+++.++...+.++....+.       ...+
T Consensus       137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-RGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            556666777777777777777666654432     2344555666555 67777777777666654321       1345


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhh
Q psy12713        317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE  396 (551)
Q Consensus       317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  396 (551)
                      +..++.++...|++++|...+++++...|.+.......                                          
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------  253 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ------------------------------------------  253 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH------------------------------------------
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH------------------------------------------
Confidence            66677777777788888877777777766532210000                                          


Q ss_pred             chhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhh
Q psy12713        397 NNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAE  476 (551)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  476 (551)
                                                                             ....+..+...|++++|+..+++++
T Consensus       254 -------------------------------------------------------~~~la~~~~~~g~~~~A~~~~~~al  278 (366)
T d1hz4a_         254 -------------------------------------------------------WRNIARAQILLGEFEPAEIVLEELN  278 (366)
T ss_dssp             -------------------------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                                                   0011122444577777777777776


Q ss_pred             c------cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713        477 K------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  515 (551)
Q Consensus       477 ~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  515 (551)
                      .      ..|....++..+|.+|...|++++|++.+++++++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         279 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            3      34567788999999999999999999999999998654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=119.29  Aligned_cols=114  Identities=17%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..+..+|..++..|+|++|+..|+++++.+|.   ++.++..+|.++..+|++++|+..+.+++.++|+++    .++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~   74 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGY   74 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chhhhhcccccccccccccccchhhhhHHHhccchh----hHH
Confidence            3556677777777777777777777777777777   777777777777777777777777777777777763    355


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY  181 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  181 (551)
                      +.+|.++..+| ++++|+..|+++++.+|+++.++..++.+.
T Consensus        75 ~~~g~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          75 SRKAAALEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            66777777777 777777777777777777777777766653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.7e-16  Score=130.00  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      ++..|..+...|++++|+..|.++   .|.++.+++++|.+++. +|++++|+..|+++++++|+++.+|.++|.++..+
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~-~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            345699999999999999999864   56678999999999887 99999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhcccccC
Q psy12713        328 GRLEEAVKCFNKALPLARD  346 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~~~  346 (551)
                      |++++|+..|++++...|.
T Consensus        84 g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHHHhCcc
Confidence            9999999999999876554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-14  Score=131.28  Aligned_cols=238  Identities=10%  Similarity=-0.024  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHH
Q psy12713         76 DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTK  155 (551)
Q Consensus        76 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~  155 (551)
                      ..+.+..+|++++...|.   ++..|+..+......++.                        ....+......+ ..++
T Consensus        31 ~~~Rv~~vyerAl~~~~~---~~~lW~~y~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~   82 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKL------------------------LAEKGDMNNAKL-FSDE   82 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH------------------------HHHTSCCHHHHH-HHHH
T ss_pred             hHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCch------------------------HHHHHHHhhccc-chHH
Confidence            345677778888888887   777777665544332210                        000111222333 5666


Q ss_pred             HHHHHHHHHhc-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy12713        156 AFADLDEAEKV-DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKMIVPGDRERVEQSLKE  233 (551)
Q Consensus       156 A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~  233 (551)
                      |...|++++.. .|.+...|...+.+....|+++.|...|++++...|.+. ..|...+....+.      |+++.|...
T Consensus        83 a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~------~~~~~ar~i  156 (308)
T d2onda1          83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA------EGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH------HCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc------CChHHHHHH
Confidence            77777777753 566666677777777777777777777777777666553 3556666555555      777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713        234 FRNFVDTHSNVVEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  312 (551)
                      |.++++..|.+...+...|.... ..|+.+.|...|++++..+|+++..|...+..... .|+++.|..+|++++...|.
T Consensus       157 ~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Confidence            77777777777777766666543 35677777777777777777777777777777555 77777777777777776554


Q ss_pred             C----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713        313 C----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       313 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      +    ...|..........|+.+.+.+.++++.+..|...
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            3    34666666666777888888887777777776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-17  Score=161.24  Aligned_cols=230  Identities=13%  Similarity=0.155  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy12713        155 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF  234 (551)
Q Consensus       155 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  234 (551)
                      +|+++|++++.+.|+.++++..+|.++..+|++++|   |++++..+|+.....                          
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~--------------------------   54 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDK--------------------------   54 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHH--------------------------
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHH--------------------------
Confidence            466666666666666666666666666666666554   556665555433322                          


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713        235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYV-HRAMLMLQARGNVDEAIKLIEKAISIDK  311 (551)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~A~~~~~~~~~~~~  311 (551)
                                    ...+.+.  ...+..+++.+++..+..  ++...... .++.+ ....+.|+.|+..+.+++..+|
T Consensus        55 --------------~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l-~~a~~~Y~~ai~~l~~~~~l~~  117 (497)
T d1ya0a1          55 --------------KVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL-EAASGFYTQLLQELCTVFNVDL  117 (497)
T ss_dssp             --------------THHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHH-HHHHHHHHHHHHHHTC------
T ss_pred             --------------hHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCh
Confidence                          1111111  112344555555555432  22222222 22333 2236778888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713        312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI  391 (551)
Q Consensus       312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  391 (551)
                      ++...+..+|.++...|++++|...+++++..+|....                                          
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------------------------------  155 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL------------------------------------------  155 (497)
T ss_dssp             -------------------------CCHHHHHHHHHHH------------------------------------------
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHH------------------------------------------
Confidence            88888888888888888888888888887765543211                                          


Q ss_pred             HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHh
Q psy12713        392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD  471 (551)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  471 (551)
                                                                                   ...+..+...|++++|+.+
T Consensus       156 -------------------------------------------------------------~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1         156 -------------------------------------------------------------VHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHTTCHHHHHHH
T ss_pred             -------------------------------------------------------------HHHHHHHHHcccHHHHHHH
Confidence                                                                         0112224445789999999


Q ss_pred             hHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhh
Q psy12713        472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAE  533 (551)
Q Consensus       472 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  533 (551)
                      |+++++++|+++.+|+++|.++...|++.+|+.+|.+++.++|.++.++.+|+.++.+..+.
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999875543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=127.11  Aligned_cols=133  Identities=14%  Similarity=0.170  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      +-.++.+|..+...|+|++|+..|.++   .|.   ++.+++.+|.++..+|++++|+..|+++++++|++    ..++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~   74 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYF   74 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHH
Confidence            445678899999999999999999864   344   56789999999999999999999999999999988    55777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNV----------------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF  204 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  204 (551)
                      .+|.++..+| ++++|+..|++++...+.+                ..+++++|.++...|++++|++.+.+++.+.|..
T Consensus        75 ~~g~~~~~~g-~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          75 QRGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHhhc-cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8999999999 9999999999999875543                3567889999999999999999999999988864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.1e-16  Score=140.78  Aligned_cols=218  Identities=14%  Similarity=0.051  Sum_probs=149.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD  257 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  257 (551)
                      |.+|...|++++|+++|.+++.+.+..                    ++..              +...++..+|.+|..
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~--------------------~~~~--------------~~a~~~~~~g~~y~~   89 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKA--------------------GNED--------------EAGNTYVEAYKCFKS   89 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT--------------------TCHH--------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHc--------------------CCCH--------------HHHHHHHHHHHHHHH
Confidence            666777777777777777766542110                    1111              113567788999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHH
Q psy12713        258 QEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEV  325 (551)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~  325 (551)
                      .|++++|+..+++++++.+..      ..++..+|.++....|++++|+.++++++++.+..      ..++..+|.++.
T Consensus        90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~  169 (290)
T d1qqea_          90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence            999999999999998875444      45677888886664699999999999998774332      456889999999


Q ss_pred             HhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhcccc
Q psy12713        326 QRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA  405 (551)
Q Consensus       326 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  405 (551)
                      ..|++++|+..|++++...|.........                                                   
T Consensus       170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  198 (290)
T d1qqea_         170 LDGQYIEASDIYSKLIKSSMGNRLSQWSL---------------------------------------------------  198 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSCTTTGGGH---------------------------------------------------
T ss_pred             HcChHHHHHHHHHHHHHhCccchhhhhhH---------------------------------------------------
Confidence            99999999999999988876643210000                                                   


Q ss_pred             CCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchH-
Q psy12713        406 DKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD-  484 (551)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-  484 (551)
                                                                 .......+.++...|+++.|...++++++.+|..+. 
T Consensus       199 -------------------------------------------~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         199 -------------------------------------------KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             -------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence                                                       000011111244568999999999999999986443 


Q ss_pred             ----HHhhhhhHHHH--hcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713        485 ----SYYQRGQIYCL--FGQYEEALRNLDKTIALNPNFHVARAQR  523 (551)
Q Consensus       485 ----~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~l  523 (551)
                          ....++.++..  .+.+++|+..|.++.+++|-........
T Consensus       236 re~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~  280 (290)
T d1qqea_         236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (290)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence                34455555554  4569999999999999987655544333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.9e-15  Score=133.47  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713         99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------  170 (551)
Q Consensus        99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------  170 (551)
                      +.+...|.+|...|++++|+..|.+++.+.+  .++.....++..+|.+|...| ++++|+..+++++.+.+..      
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHhhHHhhhcccchhH
Confidence            3455568888899999999999999988632  233334567888899999999 9999999999888875544      


Q ss_pred             hhHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        171 ADSYYQRGQIYCL-FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       171 ~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                      ..++..+|.++.. .|++++|+..|++++++.+..                    ++..              ....++.
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--------------------~~~~--------------~~~~~~~  162 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--------------------QSVA--------------LSNKCFI  162 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--------------------TCHH--------------HHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--------------------Cchh--------------hhhhHHH
Confidence            4567777777754 588888888888887653321                    1000              0134566


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHH-----HH
Q psy12713        250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-----AY  317 (551)
Q Consensus       250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~  317 (551)
                      .+|.++...|++++|+..|++++...+...       ..+...+.+++. .|++..|...++++++.+|..+.     ..
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d~~~A~~~~~~~~~~~~~~~~sre~~~l  241 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADSRESNFL  241 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC---------HHHH
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCccchHHHHHH
Confidence            677777777777777777777777665542       234556666555 77777777777777777665332     23


Q ss_pred             HHHHHHHHH--hCCHHHHHHHHHHhcccccCHH
Q psy12713        318 ETLGTIEVQ--RGRLEEAVKCFNKALPLARDEA  348 (551)
Q Consensus       318 ~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~  348 (551)
                      ..++.++..  .+.+++|+..|+++.+++|...
T Consensus       242 ~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~  274 (290)
T d1qqea_         242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI  274 (290)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHH
Confidence            344444433  3457788888877777765433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-15  Score=115.34  Aligned_cols=107  Identities=18%  Similarity=0.254  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                      +...|..++..|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..+.++++.+|+++.+|+.+|.++..+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            45678888888888888888888888888888888888888776 88888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713        328 GRLEEAVKCFNKALPLARDEAELSHIYS  355 (551)
Q Consensus       328 g~~~~A~~~~~~a~~~~~~~~~~~~~~~  355 (551)
                      |++++|+..|+++++++|+++.+...+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8888888888888888888887665554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.7e-14  Score=130.48  Aligned_cols=200  Identities=10%  Similarity=-0.003  Sum_probs=167.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--------------hCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q psy12713        152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL--------------FGQYEEALRNLDKTIAL-NPNFHVARAQRHFVVH  216 (551)
Q Consensus       152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~  216 (551)
                      ..+.+...|++|+...|.++.+|...+..+..              .+..++|...|+++++. .|.+...|...+....
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34556666777777777777777776665443              33468899999999975 7888888888887776


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713        217 KMIVPGDRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN  295 (551)
Q Consensus       217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (551)
                      ..      |+++.|...|++++...|.+. .+|..++....+.|+++.|...|.+++...|.+...+...+.......|+
T Consensus       111 ~~------~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~  184 (308)
T d2onda1         111 SR------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HT------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             hc------ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC
Confidence            66      999999999999999999774 57899999999999999999999999999999999999888775554789


Q ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH----HHHHHHhHH
Q psy12713        296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA----ELSHIYSLR  357 (551)
Q Consensus       296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~  357 (551)
                      .+.|..+|++++...|.++..|...+......|+++.|...|++++...|.++    .++..+...
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f  250 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999766433    355444333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-15  Score=120.85  Aligned_cols=125  Identities=23%  Similarity=0.279  Sum_probs=94.8

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..+..+|..++..|+|++|+..|+++++.+|+   ++.+|..+|.++..+|++++|+..|+++++++|++    ..++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~----~~a~   81 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGY   81 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc----hHHH
Confidence            4566777888888888888888888888888887   78888888888888888888888888888888877    4466


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HhCCHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC--LFGQYEEALR  192 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~  192 (551)
                      ..+|.++..+| ++++|+..+++++.++|+++.++..++.+..  ..+.+++|+.
T Consensus        82 ~~~g~~~~~~g-~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          82 YRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66888888888 8888888888888888888777777665543  2333444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.7e-17  Score=155.95  Aligned_cols=228  Identities=12%  Similarity=0.077  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713         79 TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA  158 (551)
Q Consensus        79 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~  158 (551)
                      +|+++|+++++..|+   .++++..+|.++..+|++++|   |++++..+|+...    +.... ..++ .. .+..+++
T Consensus         4 eA~q~~~qA~~l~p~---~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~----~~~~e-~~Lw-~~-~y~~~ie   70 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD---MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYAL----DKKVE-QDLW-NH-AFKNQIT   70 (497)
T ss_dssp             HHHHHHHHHHHHHGG---GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHH----HHTHH-HHHH-HH-HTHHHHH
T ss_pred             HHHHHHHHHHHcCCC---CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHH----HHhHH-HHHH-HH-HHHHHHH
Confidence            678888888888887   788888888888888888776   7788877764321    11111 1112 22 3566777


Q ss_pred             HHHHHHhcCC--CChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy12713        159 DLDEAEKVDP--NVAD-SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR  235 (551)
Q Consensus       159 ~~~~~~~~~~--~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  235 (551)
                      .+++..+...  +... ....++.+....+.|+.|+..+.+++.++|++...+..+|..+...      |+.++|+..+.
T Consensus        71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~------~~~~~A~~~~~  144 (497)
T d1ya0a1          71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ------THTSAIVKPQS  144 (497)
T ss_dssp             HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------CC
T ss_pred             HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhC------CCHHHHHHHHH
Confidence            7777765432  2222 2233455666677888888888888888888888887777444444      88888888888


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHH
Q psy12713        236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF  315 (551)
Q Consensus       236 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  315 (551)
                      +++..+|  ..++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++.. .|++.+|+.+|.+++...|..+.
T Consensus       145 ~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         145 SSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             HHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCHH
Confidence            8777654  35677888888888888888888888888888888888888888666 88888888888888888888888


Q ss_pred             HHHHHHHHHHHhC
Q psy12713        316 AYETLGTIEVQRG  328 (551)
Q Consensus       316 ~~~~l~~~~~~~g  328 (551)
                      ++.+++.++.+..
T Consensus       222 a~~nL~~~~~~~~  234 (497)
T d1ya0a1         222 ASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888776544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-14  Score=117.34  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR  177 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  177 (551)
                      +..+...|..+++.|+|++|+..|+++++.+|++    ..+|..+|.++...| ++++|+..|+++++.+|+++.++..+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhcc-ccchHHHHHHHHHHHcccchHHHHHH
Confidence            3444445555555555555555555555555544    223344555555555 55555555555555555555555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713        178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR  211 (551)
Q Consensus       178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~  211 (551)
                      |.++..+|++++|+..+++++.+.|++..++..+
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            5555555555555555555555555544444333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.8e-15  Score=126.82  Aligned_cols=118  Identities=19%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713         59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA  138 (551)
Q Consensus        59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  138 (551)
                      ++++.+...|..++..|+|++|+..|++++..+|.   ++.+|..+|.+|...|++++|+..|+++++++|++    ..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~----~~a   74 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKA   74 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc----HHH
Confidence            35677888888888888888888888888888887   88888888888888888888888888888888877    446


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713        139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  184 (551)
Q Consensus       139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  184 (551)
                      |+.+|.++..+| ++++|+..|++++.++|++...+...+..+...
T Consensus        75 ~~~lg~~~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~  119 (201)
T d2c2la1          75 HFFLGQCQLEME-SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI  119 (201)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            677888888888 888888888888887776554443333333333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-13  Score=110.56  Aligned_cols=81  Identities=23%  Similarity=0.379  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713        137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH  216 (551)
Q Consensus       137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  216 (551)
                      .++.++|.+|..+| ++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+..
T Consensus        63 ~~~~nla~~y~k~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh-hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45667888888888 88999998888888888888888888988888999999999999888888888888877776655


Q ss_pred             Hh
Q psy12713        217 KM  218 (551)
Q Consensus       217 ~~  218 (551)
                      ..
T Consensus       142 ~~  143 (170)
T d1p5qa1         142 RI  143 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-13  Score=111.43  Aligned_cols=127  Identities=17%  Similarity=0.101  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------------HTKALARLLRATVYIFTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  127 (551)
                      .+..+...|..++..|+|++|+..|++++...|..            .....++..+|.||.++|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35667788999999999999999999999887753            234567788999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713        128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL  191 (551)
Q Consensus       128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  191 (551)
                      +|++    ..+++.+|.++..+| ++++|+..|+++++++|+++.+...++.+....+...+..
T Consensus        92 ~p~~----~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          92 DSNN----EKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc----hhhhHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9998    557788999999999 9999999999999999999999999999988777666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=6.2e-14  Score=118.30  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE  304 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  304 (551)
                      |++++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+++|.++.. +|++++|+..|+
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~~~~~   96 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ   96 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444444444444333 444444444444


Q ss_pred             HHHhcCcC
Q psy12713        305 KAISIDKS  312 (551)
Q Consensus       305 ~~~~~~~~  312 (551)
                      ++++++|+
T Consensus        97 ~al~l~p~  104 (201)
T d2c2la1          97 RAYSLAKE  104 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhCcc
Confidence            44444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=1.4e-14  Score=113.80  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             ChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcC-----------HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713        464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ-----------YEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA  532 (551)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  532 (551)
                      .+++|+..|+++++++|+++.+|+++|.+|..+|+           +++|+++|+++++++|++..++..++.+....+.
T Consensus        56 ~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~  135 (145)
T d1zu2a1          56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  135 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999988764           7999999999999999999999999999877665


Q ss_pred             hhhhhh
Q psy12713        533 ELMAFS  538 (551)
Q Consensus       533 ~~~a~~  538 (551)
                      ..+...
T Consensus       136 ~~e~~k  141 (145)
T d1zu2a1         136 HAEAYK  141 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.51  E-value=8.1e-14  Score=104.18  Aligned_cols=94  Identities=12%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713        247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  326 (551)
Q Consensus       247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  326 (551)
                      ..+.+|..+.+.|++++|+..|++++..+|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++..+|.+|..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            356789999999999999999999999999999999999999777 9999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHhc
Q psy12713        327 RGRLEEAVKCFNKAL  341 (551)
Q Consensus       327 ~g~~~~A~~~~~~a~  341 (551)
                      .|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=1.9e-13  Score=108.68  Aligned_cols=133  Identities=23%  Similarity=0.312  Sum_probs=92.6

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      .+..+...|..++..|+|.+|+..|++++...+....                ..+.........+         ....+
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~   70 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE----------------WDDQILLDKKKNI---------EISCN   70 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT----------------CCCHHHHHHHHHH---------HHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh----------------hhhHHHHHhhhhH---------HHHHH
Confidence            4556778899999999999999999999887664200                0001111111111         12355


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      .++|.+|..+| ++++|+..+++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+..++
T Consensus        71 ~Nla~~~~~l~-~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          71 LNLATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhc-ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            66788888888 8888888888888888888888888888888888888888888888888888777777776665444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.50  E-value=5.1e-13  Score=108.23  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------------HTKALARLLRATVYIFTSQSTKAIEDLTQLVED  127 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  127 (551)
                      .+..+...|..++..|+|.+|+..|++++...|..            .....++.++|.||..+|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            45677888999999999999999999988765432            112233334444444444444444444444444


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713        128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF  184 (551)
Q Consensus       128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  184 (551)
                      +|++    ..+++.+|.++..+| ++++|+..|++++.++|+++.+...++.+....
T Consensus        94 ~p~~----~~a~~~~~~~~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          94 DSAN----EKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             CTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             ccch----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4444    223344444444444 444444444444444444444444444444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=3.2e-13  Score=109.76  Aligned_cols=135  Identities=14%  Similarity=0.132  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713        174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ  253 (551)
Q Consensus       174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  253 (551)
                      +...|..+...|++.+|+..|.++++..+..                        .+...........|....++.++|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~nla~   85 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------------RAAAEDADGAKLQPVALSCVLNIGA   85 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------HHHSCHHHHGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------------hhhhhhHHHHHhChhhHHHHHHHHH
Confidence            4567888888888988888888887643211                        1111112223445666778889999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713        254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA  333 (551)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  333 (551)
                      ++...|++++|+..++++++++|+++.+++.+|.++.. .|++++|+..|+++++++|++..+...++.+........++
T Consensus        86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999777 99999999999999999999999999998888776655554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=2e-13  Score=101.96  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI  219 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  219 (551)
                      +.+|.++...| ++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++... 
T Consensus        20 ~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~-   97 (112)
T d1hxia_          20 MEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-   97 (112)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHh-hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC-
Confidence            44666666666 6666666666666666666666666666666666666666666666666666666666666555555 


Q ss_pred             cCCChhHHHHHHHHHHHHH
Q psy12713        220 VPGDRERVEQSLKEFRNFV  238 (551)
Q Consensus       220 ~~~~~~~~~~A~~~~~~~~  238 (551)
                           |++++|++.+++.+
T Consensus        98 -----g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 -----HNANAALASLRAWL  111 (112)
T ss_dssp             -----HHHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHh
Confidence                 66666666665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=1.4e-12  Score=105.66  Aligned_cols=121  Identities=23%  Similarity=0.310  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch-----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK-----------IKVNAHIKRAVVHLHAASDFTKAFADLDEAEK  165 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~  165 (551)
                      .+..+...|..++..|+|.+|+..|++++...+....           .....+.++|.||..+| ++++|+..+++++.
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh-hcccchhhhhhhhh
Confidence            4667888999999999999999999999986544321           12345677899999999 99999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       166 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888777666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=1e-12  Score=104.37  Aligned_cols=135  Identities=9%  Similarity=0.050  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713         97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ  176 (551)
Q Consensus        97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  176 (551)
                      .+..+...|..++..|+|.+|+..|++++...+........                  ........+     ...++.+
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~------------------~~~~~~~~~-----~~~~~~N   72 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ------------------ILLDKKKNI-----EISCNLN   72 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH------------------HHHHHHHHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhH------------------HHHHhhhhH-----HHHHHhh
Confidence            44567778999999999999999999999876554322111                  000000111     1246789


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713        177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV  256 (551)
Q Consensus       177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  256 (551)
                      +|.+|..+|++++|+..+++++.++|.+..+++.+|.++..+      |++++|+..|+++++++|++..+...++.+..
T Consensus        73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l------g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF------GFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998      99999999999999999999999999998887


Q ss_pred             hccC
Q psy12713        257 DQED  260 (551)
Q Consensus       257 ~~~~  260 (551)
                      +.++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=2.7e-11  Score=106.67  Aligned_cols=231  Identities=14%  Similarity=0.123  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713         98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADS  173 (551)
Q Consensus        98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~  173 (551)
                      +.+++.+|..++..+++++|+++|+++.+..  +    ..+++.+|.+|..    .. ++..|..+++.+...  .++.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~----~~A~~~Lg~~y~~G~~~~~-d~~~a~~~~~~a~~~--~~~~a   72 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E----NSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDL--NYSNG   72 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCcch-hHHHHHHhhcccccc--cccch
Confidence            4566666666666666666666666665542  2    3355556666665    44 666666666665543  34556


Q ss_pred             HHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713        174 YYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT  249 (551)
Q Consensus       174 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  249 (551)
                      ...+|.++..    .++.+.|...++++....+  ..+...++..+.  ...........+...+.+...  +.+...+.
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~  146 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYH--DGKVVTRDFKKAVEYFTKACD--LNDGDGCT  146 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH--HCSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccccc--CCCcccchhHHHHHHhhhhhc--ccccchhh
Confidence            6666666554    3466677777777665433  333444443333  222334555666666666544  45566777


Q ss_pred             HHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Q psy12713        250 LFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLGT  322 (551)
Q Consensus       250 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  322 (551)
                      .+|.++..    ..+...+..+++.+.+  +.++.+.+.+|.++...   ..++++|+.+|+++.+.  +++.+++.||.
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~  222 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHH
Confidence            78887775    4466677777777764  45778888888876542   34788888888888776  35788888888


Q ss_pred             HHHH----hCCHHHHHHHHHHhcccccCH
Q psy12713        323 IEVQ----RGRLEEAVKCFNKALPLARDE  347 (551)
Q Consensus       323 ~~~~----~g~~~~A~~~~~~a~~~~~~~  347 (551)
                      +|..    ..++++|.++|+++....+..
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            8875    347888888888887765443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=5.2e-13  Score=108.51  Aligned_cols=132  Identities=20%  Similarity=0.280  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI  140 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  140 (551)
                      ++.+...|..++..|+|.+|+..|++++...+.   ....                  ..........|.    ...++.
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~---~~~~------------------~~~~~~~~~~~~----~~~~~~   81 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG---SRAA------------------AEDADGAKLQPV----ALSCVL   81 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HHHH------------------SCHHHHGGGHHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh---hhhh------------------hhhHHHHHhChh----hHHHHH
Confidence            345667788999999999999999998875442   1000                  001111222222    244566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713        141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM  218 (551)
Q Consensus       141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~  218 (551)
                      ++|.++..+| ++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus        82 nla~~~~~~~-~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          82 NIGACKLKMS-DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6778888888 8888888888888888888888888888888888888888888888888887777777777666554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.46  E-value=1.7e-11  Score=108.01  Aligned_cols=231  Identities=13%  Similarity=0.135  Sum_probs=184.7

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCCCCchhH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTSVDPKIK  135 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~  135 (551)
                      +|.+++.+|..++..||+++|+++|+++.+..     +..+++.+|.+|..    ..++..|...++.+....  +    
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~----   69 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y----   69 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--c----
Confidence            47889999999999999999999999998754     56889999999987    668899999999988754  3    


Q ss_pred             HHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713        136 VNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVA  207 (551)
Q Consensus       136 ~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~  207 (551)
                      ..+...+|.++..    .. +.+.|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...
T Consensus        70 ~~a~~~l~~~~~~~~~~~~-~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~  144 (265)
T d1ouva_          70 SNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDG  144 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             cchhhccccccccccccch-hhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccch
Confidence            2355667777765    35 88999999999987654  5666677777665    4567788888887765  456778


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713        208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYV  283 (551)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (551)
                      +..++..+...  .....+...+...++.+.+  +.++.+.+.+|.++..    .+++++|+.+|+++.+.  .++.+.+
T Consensus       145 ~~~L~~~~~~~--~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~  218 (265)
T d1ouva_         145 CTILGSLYDAG--RGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCF  218 (265)
T ss_dssp             HHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             hhhhhhhhccC--CCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHH
Confidence            88888877643  3345677888888888775  5678999999999987    67999999999999887  4688999


Q ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHHhcCcC
Q psy12713        284 HRAMLMLQAR---GNVDEAIKLIEKAISIDKS  312 (551)
Q Consensus       284 ~l~~~~~~~~---~~~~~A~~~~~~~~~~~~~  312 (551)
                      .+|.+|..-.   .++++|.++|+++......
T Consensus       219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9999976522   3899999999999887654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=103.73  Aligned_cols=111  Identities=16%  Similarity=0.082  Sum_probs=84.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---CchHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS---QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRA  143 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la  143 (551)
                      .+..+...+++++|.+.|++++..+|.   ++.+++.+|.++...+   ++++|+..+++++..+|.+..  ..+++.+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~--~~~~~~Lg   79 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH--HHHHHHHH
Confidence            455677788888888888888888887   8888888888887644   445688888888877664322  44677788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy12713        144 VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL  183 (551)
Q Consensus       144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  183 (551)
                      .+|...| ++++|+.+|+++++++|++..+...++.+..+
T Consensus        80 ~~y~~~g-~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          80 VGNYRLK-EYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh-hhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            8888888 88888888888888888888887777766544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.8e-13  Score=101.43  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCCHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEA  299 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A  299 (551)
                      +++++|.+.|++++..+|+++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++++|.+|.. .|++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HhhhHHH
Confidence            55555555555555555555555555555554422   3334555555555554433  2345555555444 5555555


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHH
Q psy12713        300 IKLIEKAISIDKSCMFAYETLGTIE  324 (551)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~  324 (551)
                      +.+|+++++++|++..+...++.+.
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            5555555555555555555544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=100.59  Aligned_cols=105  Identities=14%  Similarity=0.113  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH---HH
Q psy12713         61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK---VN  137 (551)
Q Consensus        61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~  137 (551)
                      +..+-.+|..++..|+|++|+.+|+++++.+|+   ++.++..+|.+|..+|++++|+..++++++++|.++...   ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            445667888888888888888888888888887   788888888888888888888888888888777655432   34


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12713        138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN  169 (551)
Q Consensus       138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~  169 (551)
                      ++..+|.++...+ ++++|+.+|++++..+|+
T Consensus        81 ~~~~lg~~~~~~~-~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          81 AYARIGNSYFKEE-KYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCC
Confidence            6777888888888 888888888888877664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-12  Score=99.89  Aligned_cols=103  Identities=21%  Similarity=0.378  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH-------HHHH
Q psy12713        246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-------FAYE  318 (551)
Q Consensus       246 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~  318 (551)
                      ..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++.. +|++++|+..++++++++|+++       .++.
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999877 9999999999999999888764       4677


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713        319 TLGTIEVQRGRLEEAVKCFNKALPLARDEAE  349 (551)
Q Consensus       319 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  349 (551)
                      .+|.++...+++++|+.+|++++...|+...
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence            7888889999999999999999988876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=1.8e-12  Score=101.65  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----------EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR-  293 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  293 (551)
                      +.+++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+++++|.++.. . 
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~-~g   89 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-FA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH-cc
Confidence            4444455555555555555554444444444422          233455566666666666666666666555433 3 


Q ss_pred             ----------CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713        294 ----------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  327 (551)
Q Consensus       294 ----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  327 (551)
                                +.+++|+.+|+++++++|++..++..++.+....
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence                      2356777777777777777777777777665433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-11  Score=88.69  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=68.5

Q ss_pred             hhhhchhhhhcChhHHHHhhHHhhccCCC-------chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy12713        453 ENESGQKHAASDFTKAFADLDEAEKVDPN-------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF  525 (551)
Q Consensus       453 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  525 (551)
                      +..|..++..|+|++|+.+|+++++..|.       .++++.++|.++.++|++++|+.+|+++++++|+++.++.+++.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            34444588899999999999999988553       36799999999999999999999999999999999999999988


Q ss_pred             HHHHh
Q psy12713        526 VWTST  530 (551)
Q Consensus       526 ~~~~~  530 (551)
                      +...+
T Consensus        89 ~~~~l   93 (95)
T d1tjca_          89 FEYIM   93 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.15  E-value=2.1e-10  Score=91.27  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC---
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS---  129 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---  129 (551)
                      ...+..|..++..|+|++|+..|++++++.|..         +..+.++..+|.+|..+|++++|+..+++++.+.|   
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            345566889999999999999999999987753         22467889999999999999999999999987643   


Q ss_pred             ----CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713        130 ----VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV  170 (551)
Q Consensus       130 ----~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~  170 (551)
                          ........+++++|.+|..+| ++++|+..|++++++.|..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg-~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccchhHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhHHh
Confidence                223344557888999999999 9999999999999876544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.12  E-value=7.8e-11  Score=93.77  Aligned_cols=105  Identities=17%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             HHHHHH--HHHHHHHhCCchHHHHHHHHHhhcCCCCchh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713         98 ALARLL--RATVYIFTSQSTKAIEDLTQLVEDTSVDPKI--------KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD  167 (551)
Q Consensus        98 ~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~  167 (551)
                      ..++..  .|..++..|+|++|+..|++++++.|+.+..        ...++.++|.+|..+| ++++|+..+++++.+.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-ccchhhHhhhhhhhcc
Confidence            344444  4888899999999999999999988876542        3457889999999999 9999999999999864


Q ss_pred             CC-----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713        168 PN-----------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN  203 (551)
Q Consensus       168 ~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  203 (551)
                      |.           ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            42           1346888999999999999999999999988654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.3e-10  Score=80.99  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713        245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  317 (551)
Q Consensus       245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  317 (551)
                      ++-++.+|.++.+.|++++|+.+|++++++.|.+       ..++.++|.++.. .|++++|+.+++++++++|+++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHH
Confidence            3456677778888888888888888777764432       4567777777666 7888888888888888888777777


Q ss_pred             HHHHHHHHH
Q psy12713        318 ETLGTIEVQ  326 (551)
Q Consensus       318 ~~l~~~~~~  326 (551)
                      .+++.+...
T Consensus        84 ~Nl~~~~~~   92 (95)
T d1tjca_          84 GNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.95  E-value=1e-09  Score=94.58  Aligned_cols=127  Identities=10%  Similarity=0.040  Sum_probs=64.6

Q ss_pred             HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHH
Q psy12713        183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD  262 (551)
Q Consensus       183 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  262 (551)
                      ..|++++|+..++++++.+|++...+..++.++...      |++++|+..++++++.+|+....+..++.++...+..+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~------G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID------GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            344444444444444444444444444444444444      44444444444444444444444455555554444444


Q ss_pred             HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713        263 GAEEYFNRSIR-VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA  316 (551)
Q Consensus       263 ~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  316 (551)
                      ++...+.+... ..|.....+...+..+.. .|++++|...+.++.+..|..+..
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~-~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCCcc
Confidence            44443333222 233334444555555455 677777777777777777766544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.93  E-value=5.8e-10  Score=96.22  Aligned_cols=132  Identities=12%  Similarity=-0.021  Sum_probs=105.8

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      ++...+..|++++|+..++++++.+|.   +..++..+|.++...|++++|+..++++++++|++..    ++..++.++
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~---d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll   74 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLV   74 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence            366788899999999999999999998   9999999999999999999999999999999988743    445577777


Q ss_pred             HHhcCCHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Q psy12713        147 LHAASDFTKAFADLDEAEK-VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV  206 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~  206 (551)
                      ...+ ..+++......... ..|.....+...+..+...|++++|...+.++.+..|..+.
T Consensus        75 ~a~~-~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          75 KAAQ-ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HHHH-HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             Hhcc-ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            7777 66665544333222 24555667777888999999999999999999998887654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=6.6e-08  Score=77.77  Aligned_cols=119  Identities=16%  Similarity=0.078  Sum_probs=87.4

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH  139 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  139 (551)
                      ....++..|..+...|++++|+..|.+++...++.   ....         .....-+...-.   .+.    .....++
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~---~l~~---------~~~~~w~~~~r~---~l~----~~~~~a~   70 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP---VLDD---------LRDFQFVEPFAT---ALV----EDKVLAH   70 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---TTGG---------GTTSTTHHHHHH---HHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc---cccc---------CcchHHHHHHHH---HHH----HHHHHHH
Confidence            44667777888888888888888888888877762   1110         000011111111   111    1124577


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713        140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI  198 (551)
Q Consensus       140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  198 (551)
                      ..++.++...| ++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        71 ~~la~~~~~~g-~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          71 TAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC-CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88999999999 99999999999999999999999999999999999999999999984

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=2e-08  Score=80.91  Aligned_cols=116  Identities=11%  Similarity=-0.004  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy12713        172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF  251 (551)
Q Consensus       172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  251 (551)
                      ..+...|......|++++|+..|.+++.+.++........             +.+     .........+....++..+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------------~~w-----~~~~r~~l~~~~~~a~~~l   73 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------------FQF-----VEPFATALVEDKVLAHTAK   73 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------------STT-----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------------hHH-----HHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777777777777777766543211100             000     0011111222334567777


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713        252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA  306 (551)
Q Consensus       252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  306 (551)
                      +.++...|++++|+..+++++..+|.+..+|..++.++.. .|++.+|+..|+++
T Consensus        74 a~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence            7888888888888888888888888888888888877666 78888888777776

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=1.6e-07  Score=68.03  Aligned_cols=68  Identities=18%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             cChhHHHHhhHHhhccCCCc-hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713        463 SDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST  530 (551)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  530 (551)
                      .+.++|+.+++++++.+|.+ .+.+|.+|..|.++|+|++|..+++++++++|+|..+...+-.+-...
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence            56889999999999999876 489999999999999999999999999999999999988877776554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=5.1e-06  Score=59.98  Aligned_cols=76  Identities=7%  Similarity=-0.006  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Q psy12713        245 VEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENA-SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  320 (551)
Q Consensus       245 ~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  320 (551)
                      ..+.+.+|+++....   +.++|+..++.++..+|... +.++.+|..|+. .|+|++|..+++++++++|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            445555555555432   33455555555555555442 455555555555 5666666666666666666555554433


Q ss_pred             H
Q psy12713        321 G  321 (551)
Q Consensus       321 ~  321 (551)
                      -
T Consensus       114 ~  114 (124)
T d2pqrb1         114 S  114 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=0.0028  Score=58.74  Aligned_cols=52  Identities=6%  Similarity=-0.188  Sum_probs=42.4

Q ss_pred             hhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713        458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA  511 (551)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  511 (551)
                      .+...|+...|...+..++..-  ++.-...+|.+..+.|.++.||....++-.
T Consensus       390 ~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         390 ELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            3667899999999998887543  466777889999999999999988887743

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.04  E-value=7.3e-05  Score=56.31  Aligned_cols=112  Identities=17%  Similarity=0.083  Sum_probs=80.4

Q ss_pred             hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----h
Q psy12713         74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----A  149 (551)
Q Consensus        74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~  149 (551)
                      ..|+++|+.+|+++.+...     +.+.+.++.  ....+.++|+..++++.+..  +    ..+.+.+|.+|..    .
T Consensus         6 ~kd~~~A~~~~~kaa~~g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~----~~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE-----MFGCLSLVS--NSQINKQKLFQYLSKACELN--S----GNGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHCSSSC
T ss_pred             ccCHHHHHHHHHHHHHCCC-----hhhhhhhcc--ccccCHHHHHHHHhhhhccc--c----hhhhhhHHHhhhhccccc
Confidence            3578888888888877653     234555553  34567788888888887653  3    3466678888775    3


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Q psy12713        150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALN  201 (551)
Q Consensus       150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~  201 (551)
                      . ++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+..+|+.+|+++.+..
T Consensus        73 ~-d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          73 K-DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             C-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             h-hhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            4 788888888888764  467788888888876    457888888888887654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.99  E-value=0.00015  Score=54.50  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Q psy12713        225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIK  301 (551)
Q Consensus       225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~  301 (551)
                      .++++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..-   ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            45555555555555442  2333333332  2334566666666666543  4556666666664431   234666666


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhcccc
Q psy12713        302 LIEKAISIDKSCMFAYETLGTIEVQ----RGRLEEAVKCFNKALPLA  344 (551)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  344 (551)
                      +|+++.+.  .++.+.+.+|.+|..    ..+..+|+.+|+++.+..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            66666553  345666666666665    346666666666665543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.38  Score=43.75  Aligned_cols=32  Identities=6%  Similarity=-0.160  Sum_probs=23.2

Q ss_pred             chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcC
Q psy12713         60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIEST   91 (551)
Q Consensus        60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~   91 (551)
                      ++......+......|+-..|...+..+....
T Consensus       101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1         101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            45556667777888888888888777766544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.29  E-value=0.29  Score=42.20  Aligned_cols=130  Identities=13%  Similarity=0.071  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713         63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR  142 (551)
Q Consensus        63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  142 (551)
                      ..-..|..+...|.|+.|..+|...    ++       +-.+..++.+.++++.|.+.+.+.-     +    ...|...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~----~d-------~~rl~~~~v~l~~~~~avd~~~k~~-----~----~~~~k~~   75 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNV----SN-------FGRLASTLVHLGEYQAAVDGARKAN-----S----TRTWKEV   75 (336)
T ss_dssp             -------------CTTTHHHHHHHT----TC-------HHHHHHHHHTTTCHHHHHHHHHHHT-----C----HHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhC----CC-------HHHHHHHHHhhccHHHHHHHHHHcC-----C----HHHHHHH
Confidence            3445688888999999999888743    22       3345577788999999988887652     2    2244556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713        143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK  217 (551)
Q Consensus       143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  217 (551)
                      ...+.... ...-|.-. ...   ...+++-.......|...|.+++.+.+++.++...+.+...+..++.++.+
T Consensus        76 ~~~l~~~~-e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          76 CFACVDGK-EFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHTT-CHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhCc-HHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            66777666 55543211 111   122455556677888899999999999999998888888877777765543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.46  E-value=0.67  Score=39.82  Aligned_cols=235  Identities=9%  Similarity=0.032  Sum_probs=132.6

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713         67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH  146 (551)
Q Consensus        67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  146 (551)
                      ....+...+++..|...+.+.     +   ....|......+....+...|.-. .....   .++.    -.......+
T Consensus        46 l~~~~v~l~~~~~avd~~~k~-----~---~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~~d----~l~~~v~~y  109 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMC-GLHIV---VHAD----ELEELINYY  109 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-----T---CHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TCHH----HHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc-----C---CHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cCHH----HHHHHHHHH
Confidence            455667777888887776654     2   466788888888777665443221 11111   1222    223367788


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCCHH-------HHHHHHHHHHHh
Q psy12713        147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA-LNPNFHV-------ARAQRHFVVHKM  218 (551)
Q Consensus       147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~-------~~~~~~~~~~~~  218 (551)
                      ...| .+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.++.... .++....       .|-.+..++.+.
T Consensus       110 e~~~-~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         110 QDRG-YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHTT-CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHcC-ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            8889 9999999999999888888888889999887654 4555555544211 1111000       112223233333


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHH
Q psy12713        219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY----------VHRAML  288 (551)
Q Consensus       219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~l~~~  288 (551)
                            |++++|+...-.    .|.+..-....-.++.+.++.+..-+...-.++..|+...-+          ..+...
T Consensus       188 ------~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~  257 (336)
T d1b89a_         188 ------EEYDNAIITMMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY  257 (336)
T ss_dssp             ------TCHHHHHHHHHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHH
T ss_pred             ------CCHHHHHHHHHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHH
Confidence                  667666655432    222211122333444555555555554444454444332111          111122


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHH
Q psy12713        289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE  332 (551)
Q Consensus       289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  332 (551)
                       +.+.++..-...+++....  .++..+...++.+|...++++.
T Consensus       258 -~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         258 -FSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             -HHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH
T ss_pred             -HHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH
Confidence             3335666666666666544  3356788899999999999755

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.08  E-value=3.5  Score=32.76  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhcC
Q psy12713         62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVEDT  128 (551)
Q Consensus        62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~  128 (551)
                      +.++..|...-+.++|++.+.+.++++..+|.  ...+-...+..+|- ..|....+...+.......
T Consensus         4 e~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e--Lt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~   69 (230)
T d2o02a1           4 NELVQKAKLAEQAERYDDMAACMKSVTEQGAE--LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT   69 (230)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            45677888888899999999999999988886  34444555555543 2455566666665554433

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.92  E-value=4.8  Score=28.08  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713        283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL  343 (551)
Q Consensus       283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  343 (551)
                      ..+|.-++-.+|+-++-.+.++..++...-+++.+..+|.+|.+.|...+|-+.+.+|-+.
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            3444444444777777777777766666666778888888888888888888888777554