Psyllid ID: psy12784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL
Secondary Structure (PSIPRED)
ccccccHHHHHHHEEEHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAGAGLVTQCLMGFSLIKNTKKLisldrspddiecvHGIRTLNAFMLLLSHKSMalffnpyinrtqmasl
Flexible Loop (DISEMBL)
MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL
Low Complexity Region (SEG)
MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL
Disordered region (IsUnstruct)
****GLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYIN*******
Disordered Region (DISOPRED)
******V**CLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRT**A**
Disordered Region (DISEMBL)
MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL
Disordered Region (DISPRO)
****GLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
312379511	1157	hypothetical protein AND_08625 [Anophele	0.857	0.051	0.616	4e-16
345483792	768	PREDICTED: nose resistant to fluoxetine	0.871	0.079	0.655	7e-16
340727308	747	PREDICTED: hypothetical protein LOC10064	0.871	0.081	0.622	3e-15
157119020	674	hypothetical protein AaeL_AAEL001466 [Ae	0.828	0.086	0.586	4e-15
383847815	745	PREDICTED: nose resistant to fluoxetine	0.857	0.080	0.633	4e-15
350423020	747	PREDICTED: hypothetical protein LOC10074	0.885	0.082	0.629	4e-15
347964188	720	AGAP000629-PA [Anopheles gambiae str. PE	0.814	0.079	0.631	5e-15
328700343	771	PREDICTED: hypothetical protein LOC10016	0.885	0.080	0.596	2e-14
270016930	189	hypothetical protein TcasGA2_TC010604 [T	0.9	0.333	0.571	2e-14
91083281	721	PREDICTED: similar to lots wife CG33968-	0.814	0.079	0.614	3e-14

>gi|312379511|gb|EFR25761.1| hypothetical protein AND_08625 [Anopheles darlingi]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 11  LMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL 70
           L  FSLIKNT+ ++ L    +DI CVHGIR LNA +LL++HKSMALFFNPY+NRT+M+ +
Sbjct: 388 LTAFSLIKNTRSIVCLKEERNDISCVHGIRFLNAMLLLIAHKSMALFFNPYVNRTEMSEI 447

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483792|ref|XP_001603690.2| PREDICTED: nose resistant to fluoxetine protein 6-like [Nasonia vitripennis]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 48/61 (78%)

Query: 7   VTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQ 66
           ++  L  FSL KN  KL+SL+RS  DI  +HGIR  NAFMLLLSHKS+ALFFNPY+NRT+
Sbjct: 319 LSPVLSAFSLKKNVLKLVSLERSESDIATLHGIRAFNAFMLLLSHKSLALFFNPYVNRTE 378

Query: 67  M 67
           M
Sbjct: 379 M 379

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727308|ref|XP_003401988.1| PREDICTED: hypothetical protein LOC100646807 [Bombus terrestris]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 50/61 (81%)

Query: 8   TQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQM 67
           ++ L+ FSL +N KKLISL+R  +DI  +HG+R +NA MLLL+HKSMALFFNPY NRT+M
Sbjct: 307 SELLLSFSLKRNFKKLISLERRQNDIATLHGVRAINALMLLLAHKSMALFFNPYANRTEM 366

Query: 68  A 68
           +
Sbjct: 367 S 367

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119020|ref|XP_001659297.1| hypothetical protein AaeL_AAEL001466 [Aedes aegypti] gi|108883197|gb|EAT47422.1| AAEL001466-PA [Aedes aegypti]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 48/58 (82%)

Query: 11  LMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA 68
           L  FSLI+NTK +  +   P+D+ C+HG+R LNAF+L+++HKSMALF+NPYINRT+M+
Sbjct: 211 LTSFSLIRNTKTIFCVKEDPNDVACIHGLRFLNAFLLIVAHKSMALFYNPYINRTRMS 268

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847815|ref|XP_003699548.1| PREDICTED: nose resistant to fluoxetine protein 6-like [Megachile rotundata]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 9   QCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA 68
           + L+ FSL +N KKL+SL+RS +DI  +HG+R +NA MLLL+HKSMALFFNPY+NRT M+
Sbjct: 306 ELLLCFSLKRNYKKLVSLERSQNDIPTLHGVRAINAAMLLLAHKSMALFFNPYVNRTNMS 365

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423020|ref|XP_003493361.1| PREDICTED: hypothetical protein LOC100749733 [Bombus impatiens]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 8   TQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQM 67
           ++ L+ FSL +N KKLISL+R  +DI  +HGIR +NA MLLL+HKSMALFFNPY NRT+M
Sbjct: 307 SELLLSFSLKRNFKKLISLERRQNDIATLHGIRAINALMLLLAHKSMALFFNPYANRTEM 366

Query: 68  AS 69
           + 
Sbjct: 367 SE 368

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964188|ref|XP_001689387.2| AGAP000629-PA [Anopheles gambiae str. PEST] gi|333467415|gb|EDO64293.2| AGAP000629-PA [Anopheles gambiae str. PEST]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 14  FSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASL 70
           FSLIKNT+ ++S     +DI C+HGIR LNA +LL++HKSMALFFNPYINRT+M+ +
Sbjct: 236 FSLIKNTRSILSFKEERNDIACLHGIRFLNAMLLLIAHKSMALFFNPYINRTEMSEV 292

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700343|ref|XP_001942708.2| PREDICTED: hypothetical protein LOC100165956 [Acyrthosiphon pisum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 8   TQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQM 67
           ++ L  FSL +N ++L+S++ SP+DI  VHGIR LNA MLL SHKSMA+FFNPY NRT M
Sbjct: 321 SKVLYSFSLKRNVRQLLSVNESPEDIRSVHGIRALNALMLLASHKSMAMFFNPYSNRTAM 380

Query: 68  AS 69
             
Sbjct: 381 TE 382

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016930|gb|EFA13376.1| hypothetical protein TcasGA2_TC010604 [Tribolium castaneum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 5   GLVTQCLMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINR 64
           G   + ++ FSL KN   L+++ RS DDIE +HGIR LNAF+L+L+HKSMA+FF PY+NR
Sbjct: 117 GEKNRWMVAFSLRKNWTTLVTIKRSSDDIEAIHGIRFLNAFLLVLAHKSMAMFFTPYMNR 176

Query: 65  TQM 67
           T+M
Sbjct: 177 TEM 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083281|ref|XP_974400.1| PREDICTED: similar to lots wife CG33968-PA [Tribolium castaneum] gi|270007725|gb|EFA04173.1| hypothetical protein TcasGA2_TC014422 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 11  LMGFSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQM 67
           ++ FSL KN   L+++ RS DDIE +HGIR LNAF+L+L+HKSMA+FF PY+NRT+M
Sbjct: 288 MVAFSLRKNWTTLVTIKRSSDDIEAIHGIRFLNAFLLVLAHKSMAMFFTPYMNRTEM 344

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0260006	827	drd "drop dead" [Drosophila me	0.785	0.066	0.654	1.1e-12

FB|FBgn0260006 drd "drop dead" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:    14 FSLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA 68
             FSL KN + L S   +P DIE VHGIR LNA ML+ SHKSMA+FFNPY NRT M+
Sbjct:   365 FSLDKNLRWLFSTSSAPGDIEAVHGIRFLNAIMLIFSHKSMAMFFNPYNNRTAMS 419


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.138   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.38    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  461 (49 KB)
  Total size of DFA:  81 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.30u 0.11s 7.41t   Elapsed:  00:00:00
  Total cpu time:  7.30u 0.11s 7.41t   Elapsed:  00:00:00
  Start:  Thu Aug 15 18:00:27 2013   End:  Thu Aug 15 18:00:27 2013

GO:0016021 "integral to membrane" evidence=ISS

GO:0048477 "oogenesis" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0009651 "response to salt stress" evidence=NAS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0007586 "digestion" evidence=IDA;IMP

GO:0030421 "defecation" evidence=IDA

GO:0022600 "digestive system process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG3700|consensus	705		99.39
PF01757	340	Acyl_transf_3: Acyltransferase family; InterPro: I	95.55

>KOG3700|consensus

Probab=99.39  E-value=1.3e-14  Score=109.85  Aligned_cols=65  Identities=32%  Similarity=0.528  Sum_probs=58.8

Q ss_pred             CcchhhhhhheehhhhHHHhhccCC-CCCCcchhHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Q psy12784          4 AGLVTQCLMGFSLIKNTKKLISLDR-SPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA   68 (70)
Q Consensus         4 ~~~~~~~l~~FS~~~N~~~L~~~~~-~~~~l~~l~GiR~lsm~wIi~gH~~~~~~~~p~~N~~~~e   68 (70)
                      ++...+++.|||+++|+++|++.++ +++.++|+||||++||+|||.||++++....|.+|+..+.
T Consensus       239 ~~~~~~il~~FS~~~N~~~lfs~~~~~~~~I~~L~giR~lS~~WVi~gH~~~~~~~~~~~n~~~~~  304 (705)
T KOG3700|consen  239 QNRLARILLAFSLWTNAKLLFSVKESKPGFIDCLDGIRFLSMFWVVFGHTFNFLQFSPVDNLASLL  304 (705)
T ss_pred             hhhhhhhheeeeHhhhHHHHcccccCCCCcceeecchheeeeeEEEeccEEEEEeccccccHHHHH
Confidence            4678899999999999999999875 4578999999999999999999999999988889988764

>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans

Probab=95.55  E-value=0.019  Score=37.18  Aligned_cols=29  Identities=17%  Similarity=0.482  Sum_probs=23.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy12784         34 ECVHGIRTLNAFMLLLSHKSMALFFNPYI   62 (70)
Q Consensus        34 ~~l~GiR~lsm~wIi~gH~~~~~~~~p~~   62 (70)
                      ..+|++|.+++++|+.+|........+..
T Consensus         2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~   30 (340)
T PF01757_consen    2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQ   30 (340)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            57999999999999999999865444333

It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00