Psyllid ID: psy12790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MKAGHPGGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQEHTRGAE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHcccccHHHHHHHHccccccccccccccccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mkaghpggaygksgvekldesnkgHQMLKRmgwggaglgakeqgieapisggevreredlykgvgvslndpyenfRKSKKQAFISRMKERQEHTRGAE
Flexible Loop (DISEMBL)
mkaghpggaygksgveKLDESNKGHQMLKRMGWGGAGLGAKEQGIEapisggevrereDLYKGvgvslndpyenfrksKKQAFISRMKerqehtrgae
Low Complexity Region (SEG)
MKAGHPGGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQEHTRGAE
Disordered region (IsUnstruct)
************************************************************YKGVGV********************************
Disordered Region (DISOPRED)
*************************QMLKRMGWG**GL*****GIE**I************************NFRKSKKQAF***************
Disordered Region (DISEMBL)
*********YGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFI**************
Disordered Region (DISPRO)
*****************LDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKAGHPGGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQEHTRGAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q8CGZ0	936	Calcium homeostasis endop	yes	N/A	0.795	0.083	0.632	3e-23
Q8IWX8	916	Calcium homeostasis endop	yes	N/A	0.775	0.082	0.649	3e-23
Q6DDU9	749	RNA-binding protein 5-B O	N/A	N/A	0.397	0.052	0.560	0.0004
A0JMV4	833	RNA-binding protein 5-A O	N/A	N/A	0.397	0.046	0.560	0.0004
A4IGK4	838	RNA-binding protein 5 OS=	no	N/A	0.397	0.046	0.560	0.0005

>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 17  KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
           +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 847 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 906

Query: 76  RKSKKQAFISRMKERQEHT 94
           R++K  +FI+RMK R E +
Sbjct: 907 RRNKSYSFIARMKARDEFS 925

Involved in calcium homeostasis, growth and proliferation.
Mus musculus (taxid: 10090)

>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 64/77 (83%), Gaps = 1/77 (1%)

Query: 17  KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
           +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 838 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897

Query: 76  RKSKKQAFISRMKERQE 92
           R++K  +FI+RMK R E
Sbjct: 898 RRNKSYSFIARMKARDE 914

Involved in calcium homeostasis, growth and proliferation.

Homo sapiens (taxid: 9606)

>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 18  LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER 57
           +D SN G++ML+ MGW  G+GLG K QGI API   +VR R
Sbjct: 675 IDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQ-AQVRMR 714

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron.

Xenopus laevis (taxid: 8355)

>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 18  LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER 57
           +D SN G++ML+ MGW  G+GLG K QGI API   +VR R
Sbjct: 759 IDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQ-AQVRMR 798

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron.

Xenopus laevis (taxid: 8355)

>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 18  LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER 57
           +D SN G++ML+ MGW  G+GLG K QGI API   +VR R
Sbjct: 764 IDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQ-AQVRMR 803

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
193676488	765	PREDICTED: calcium homeostasis endoplasm	0.877	0.112	0.709	6e-31
345492559	826	PREDICTED: hypothetical protein LOC10011	0.836	0.099	0.759	1e-30
242018773	805	conserved hypothetical protein [Pediculu	0.877	0.106	0.755	2e-30
328787605	795	PREDICTED: hypothetical protein LOC41038	0.836	0.103	0.759	1e-28
380027324	795	PREDICTED: uncharacterized protein LOC10	0.836	0.103	0.759	2e-28
340722599	796	PREDICTED: hypothetical protein LOC10064	0.836	0.103	0.759	2e-28
383849128	794	PREDICTED: uncharacterized protein LOC10	0.836	0.103	0.746	7e-28
307179320	588	Calcium homeostasis endoplasmic reticulu	0.836	0.139	0.722	1e-27
307213736	799	Calcium homeostasis endoplasmic reticulu	0.836	0.102	0.722	2e-27
270013513	765	hypothetical protein TcasGA2_TC012118 [T	0.785	0.100	0.701	5e-27

>gi|193676488|ref|XP_001950464.1| PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/86 (70%), Positives = 75/86 (87%)

Query: 7   GGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGV 66
           G ++GK+  E+LDESNKGHQ+LK+MGWGGAGLG+KEQGI+ PIS G+VR+R D YKGVG+
Sbjct: 673 GTSFGKTAQERLDESNKGHQLLKKMGWGGAGLGSKEQGIDTPISSGDVRDRTDQYKGVGI 732

Query: 67  SLNDPYENFRKSKKQAFISRMKERQE 92
           SLNDPYENFRK+K +AFI RM+ R E
Sbjct: 733 SLNDPYENFRKNKGKAFIHRMRTRAE 758

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492559|ref|XP_001601006.2| PREDICTED: hypothetical protein LOC100116536 [Nasonia vitripennis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVEK-LDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  +  LDESNKGHQ+L++MGWGGAGLGA EQGIEAPISGGE+R+R D+YKGVG
Sbjct: 730 GSMYSKANQDMGLDESNKGHQLLRKMGWGGAGLGANEQGIEAPISGGEIRDRTDMYKGVG 789

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           V+LNDPYENFRKSK QAFI+RMK
Sbjct: 790 VNLNDPYENFRKSKGQAFITRMK 812

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018773|ref|XP_002429848.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514866|gb|EEB17110.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/86 (75%), Positives = 74/86 (86%)

Query: 7   GGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGV 66
           G  YGK   + LDESNKGHQMLK+MGW GAGLG+KEQGIEAPI+GGEVR++ D YKGVGV
Sbjct: 714 GSNYGKPLEQHLDESNKGHQMLKKMGWSGAGLGSKEQGIEAPIAGGEVRDKVDQYKGVGV 773

Query: 67  SLNDPYENFRKSKKQAFISRMKERQE 92
           +L+DPYENFRKSK QAFI+RMK R E
Sbjct: 774 NLHDPYENFRKSKGQAFITRMKARAE 799

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787605|ref|XP_393863.3| PREDICTED: hypothetical protein LOC410383 [Apis mellifera]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  E  LDESNKGHQ+LK+MGWGGAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 699 GSTYSKAPQEISLDESNKGHQLLKKMGWGGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 758

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYENFRKSK QAFI+RMK
Sbjct: 759 INLNDPYENFRKSKGQAFITRMK 781

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027324|ref|XP_003697377.1| PREDICTED: uncharacterized protein LOC100868892 [Apis florea]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  E  LDESNKGHQ+LK+MGWGGAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 699 GSTYSKAPQEISLDESNKGHQLLKKMGWGGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 758

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYENFRKSK QAFI+RMK
Sbjct: 759 INLNDPYENFRKSKGQAFITRMK 781

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722599|ref|XP_003399691.1| PREDICTED: hypothetical protein LOC100642260 [Bombus terrestris] gi|350418614|ref|XP_003491915.1| PREDICTED: hypothetical protein LOC100743755 [Bombus impatiens]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  E  LDESNKGHQ+LK+MGWGGAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 700 GSTYSKAPQEISLDESNKGHQLLKKMGWGGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 759

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYENFRKSK QAFI+RMK
Sbjct: 760 INLNDPYENFRKSKGQAFITRMK 782

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849128|ref|XP_003700198.1| PREDICTED: uncharacterized protein LOC100878283 [Megachile rotundata]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/83 (74%), Positives = 71/83 (85%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  E  LDESNKGHQ+LK+MGW GAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 698 GSTYSKAPQEISLDESNKGHQLLKKMGWSGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 757

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYENFRKSK QAFI+RMK
Sbjct: 758 INLNDPYENFRKSKGQAFITRMK 780

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179320|gb|EFN67684.1| Calcium homeostasis endoplasmic reticulum protein [Camponotus floridanus]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/83 (72%), Positives = 71/83 (85%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K+  E  +DESNKGHQ+LK+MGWGGAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 492 GSTYSKAPQEISIDESNKGHQLLKKMGWGGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 551

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYE FRK+K QAFI+RMK
Sbjct: 552 INLNDPYETFRKNKGQAFITRMK 574

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213736|gb|EFN89074.1| Calcium homeostasis endoplasmic reticulum protein [Harpegnathos saltator]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/83 (72%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 7   GGAYGKSGVE-KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVG 65
           G  Y K   E  +DE+NKGHQ+LK+MGW GAGLGA EQGIEAPISGGE+R++ D YKGVG
Sbjct: 703 GSTYSKVPQEISIDENNKGHQLLKKMGWSGAGLGANEQGIEAPISGGEIRDKNDQYKGVG 762

Query: 66  VSLNDPYENFRKSKKQAFISRMK 88
           ++LNDPYENFRKSK QAFI+RMK
Sbjct: 763 INLNDPYENFRKSKGQAFITRMK 785

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013513|gb|EFA09961.1| hypothetical protein TcasGA2_TC012118 [Tribolium castaneum]

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/77 (70%), Positives = 69/77 (89%)

Query: 16  EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
           +++D +NKGHQML++MGWGG+GLGA EQGI+APISGG+VR+R+D +KGVG +LNDPYENF
Sbjct: 678 QEIDSTNKGHQMLRKMGWGGSGLGANEQGIDAPISGGDVRDRQDQFKGVGCNLNDPYENF 737

Query: 76  RKSKKQAFISRMKERQE 92
           RK+K  AFI+RMK R E
Sbjct: 738 RKNKGAAFITRMKARAE 754

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
RGD|1305279	946	Cherp "calcium homeostasis end	0.826	0.085	0.638	9.2e-23
UNIPROTKB|F1S9W3	852	CHERP "Uncharacterized protein	0.775	0.089	0.649	1.3e-22
UNIPROTKB|Q8IWX8	916	CHERP "Calcium homeostasis end	0.775	0.082	0.649	1.4e-22
UNIPROTKB|J3QK89	927	CHERP "Calcium homeostasis end	0.775	0.081	0.649	1.4e-22
MGI|MGI:106417	936	Cherp "calcium homeostasis end	0.775	0.081	0.649	1.5e-22
UNIPROTKB|F1NDZ9	905	CHERP "Uncharacterized protein	0.775	0.083	0.636	1.8e-22
UNIPROTKB|A8E648	916	CHERP "CHERP protein" [Bos tau	0.775	0.082	0.636	2.3e-22
UNIPROTKB|E2RHU5	940	CHERP "Uncharacterized protein	0.806	0.084	0.625	2.4e-22
UNIPROTKB|J9NZK1	916	CHERP "Uncharacterized protein	0.775	0.082	0.636	3.8e-22
FB|FBgn0261872	960	scaf6 [Drosophila melanogaster	0.867	0.088	0.545	1.4e-21

RGD|1305279 Cherp "calcium homeostasis endoplasmic reticulum protein" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   857 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 916

Query:    76 RKSKKQAFISRMKERQEH-TRGA 97
             R++K  +FI+RMK R E  T GA
Sbjct:   917 RRNKSYSFIARMKARDEFSTFGA 939

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0033017 "sarcoplasmic reticulum membrane" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=ISO

UNIPROTKB|F1S9W3 CHERP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 273 (101.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   774 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 833

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   834 RRNKSYSFIARMKARDE 850

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8IWX8 CHERP "Calcium homeostasis endoplasmic reticulum protein" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   838 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   898 RRNKSYSFIARMKARDE 914

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS

GO:0007399 "nervous system development" evidence=TAS

GO:0006874 "cellular calcium ion homeostasis" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

UNIPROTKB|J3QK89 CHERP "Calcium homeostasis endoplasmic reticulum protein" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   849 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 908

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   909 RRNKSYSFIARMKARDE 925

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

MGI|MGI:106417 Cherp "calcium homeostasis endoplasmic reticulum protein" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   847 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 906

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   907 RRNKSYSFIARMKARDE 923

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=ISO

UNIPROTKB|F1NDZ9 CHERP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LGAKEQGI+ PI GG++R++ D YKGVGV+L+DPYEN+
Sbjct:   828 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDIRDKWDQYKGVGVALDDPYENY 887

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   888 RRNKSYSFIARMKARDE 904

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IEA

UNIPROTKB|A8E648 CHERP "CHERP protein" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R+E
Sbjct:   898 RRNKSYSFIARMKAREE 914

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RHU5 CHERP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 50/80 (62%), Positives = 64/80 (80%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897

Query:    76 RKSKKQAFISRMKERQEHTR 95
             R++K  +FI+RMK R E  R
Sbjct:   898 RRNKSYSFIARMKARDECNR 917

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9NZK1 CHERP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 49/77 (63%), Positives = 63/77 (81%)

Query:    17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
             +L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct:   838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897

Query:    76 RKSKKQAFISRMKERQE 92
             R++K  +FI+RMK R E
Sbjct:   898 RRNKSYSFIARMKARDE 914

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

FB|FBgn0261872 scaf6 [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 48/88 (54%), Positives = 66/88 (75%)

Query:     7 GGAYGKSGVEKLDESNKGHQMLKRMGWGGAG--LGAKEQGIEAPISGGEVREREDLYKGV 64
             G  + K   + ++ESNKGHQML +MGW G G  LG+K QGI+ PISGGEVR+R ++YKGV
Sbjct:   872 GSTFAKPA-DFIEESNKGHQMLMKMGWAGTGTGLGSKNQGIDTPISGGEVRDRREMYKGV 930

Query:    65 GVSLNDPYENFRKSKKQAFISRMKERQE 92
             G +++DP+E+FRK+K  AF  RM+ R +
Sbjct:   931 GANMHDPFESFRKNKGAAFAHRMRSRDD 958

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;NAS

GO:0005681 "spliceosomal complex" evidence=ISS;NAS

GO:0003729 "mRNA binding" evidence=ISS;NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IWX8	CHERP_HUMAN	No assigned EC number	0.6493	0.7755	0.0829	yes	N/A
Q8CGZ0	CHERP_MOUSE	No assigned EC number	0.6329	0.7959	0.0833	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
smart00443	47	smart00443, G_patch, glycine rich nucleic binding	2e-06
pfam01585	45	pfam01585, G-patch, G-patch domain	6e-06

>gnl|CDD|197727 smart00443, G_patch, glycine rich nucleic binding domain

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 18 LDESNKGHQMLKRMGW-GGAGLGAKEQGIEAPISGGEVRERE 58
          +  SN G ++L++MGW  G GLG  EQGI  PIS    ++R+
Sbjct: 1  ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRK 42

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins. Length = 47

>gnl|CDD|144978 pfam01585, G-patch, G-patch domain

 Score = 39.4 bits (93), Expect = 6e-06
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 20 ESNKGHQMLKRMGW-GGAGLGAKEQGIEAPISGGEVRERE 58
           SN G ++L++MGW  G GLG  EQGI  PI      +R+
Sbjct: 1  TSNIGFKLLQKMGWKPGQGLGKNEQGITEPIEAKIRPDRK 40

This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG0965|consensus	988		99.59
PF01585	45	G-patch: G-patch domain; InterPro: IPR000467 The D	99.52
KOG4368|consensus	757		99.48
smart00443	47	G_patch glycine rich nucleic binding domain. A pre	99.41
KOG2809|consensus	326		99.06
KOG2184|consensus	767		98.81
PF12656	77	G-patch_2: DExH-box splicing factor binding site	98.71
KOG2384|consensus	223		98.41
KOG3673|consensus	845		98.34
KOG2185|consensus	486		98.28
KOG1994|consensus	268		98.11
KOG1996|consensus	378		98.08
KOG0154|consensus	573		98.02
KOG4315|consensus	455		96.99
KOG2138|consensus	883		94.78
KOG1994|consensus	268		88.08

>KOG0965|consensus

Probab=99.59  E-value=5.4e-16  Score=134.83  Aligned_cols=80  Identities=38%  Similarity=0.597  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC-------CchhHHHHHhHHHHHH
Q psy12790         13 SGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL-------NDPYENFRKSKKQAFI   84 (98)
Q Consensus        13 ~~~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~-------~d~~e~~rk~~~~~f~   84 (98)
                      ..+..|.++|+||+||+||||+ |.|||..++||.+||....++.   +..|+|.+.       +|.|++|||+||.+|+
T Consensus       898 yke~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~---~g~G~G~s~pael~peDdeYeayrKRMMLaYr  974 (988)
T KOG0965|consen  898 YKEQKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGS---LGWGWGGSQPAELQPEDDEYEAYRKRMMLAYR  974 (988)
T ss_pred             HHHhhccccchHHHHHHHhCccccccccccCcccccchhhccccc---CCcccccCCccccCchhhHHHHHHHHHHHhhh
Confidence            3467899999999999999999 9999999999999999876664   358888763       7899999999999999


Q ss_pred             HHHHHHHHhhc
Q psy12790         85 SRMKERQEHTR   95 (98)
Q Consensus        85 ~r~k~r~~~~~   95 (98)
                      .|---..+.+|
T Consensus       975 fRPNPLnNPRR  985 (988)
T KOG0965|consen  975 FRPNPLNNPRR  985 (988)
T ss_pred             cCCCcCCCccc
Confidence            98654444433

>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function

Probab=99.52  E-value=1.1e-14  Score=86.60  Aligned_cols=44  Identities=41%  Similarity=0.782  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790         20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS   67 (98)
Q Consensus        20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~   67 (98)
                      +++||++||++|||+ |+|||++.+||++||.+. .+.   .+.|||+.
T Consensus         1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~-~~~---~~~GlG~~   45 (45)
T PF01585_consen    1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVK-KKK---DRKGLGAE   45 (45)
T ss_pred             CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEe-eEc---CCccccCC
Confidence            478999999999999 999999999999999984 443   47899973

This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular

>KOG4368|consensus

Probab=99.48  E-value=1.4e-14  Score=123.57  Aligned_cols=76  Identities=70%  Similarity=1.170  Sum_probs=71.2

Q ss_pred             CCCCCCCCHHHHHHHhcCCCCCCCCCCCCccccceecceeeccCCCcceeccCCCchhHHHHHhHHHHHHHHHHHHH
Q psy12790         15 VEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQ   91 (98)
Q Consensus        15 ~~~i~~~n~G~kmL~KMGW~G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~d~~e~~rk~~~~~f~~r~k~r~   91 (98)
                      ...|.++|+|.+||.||||.|.|||..++||.+||...++++...-..|+|... |+|++|||+++.+|.+|++.+.
T Consensus       681 s~~lse~NKGhQml~KMGWsG~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l-DP~E~FRKnK~g~f~~Rm~~rd  756 (757)
T KOG4368|consen  681 SAPLGEENKGHQMLVKMGWSGSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL-DPYENFRKNKSYSFIARMKARD  756 (757)
T ss_pred             CCccccccchhhhHhhcCcccCCcccccccccCcccCccccchhhhhcccCccc-CcHHHHHHhhchhhhhcccccC
Confidence            345999999999999999999999999999999999999999888889999988 9999999999999999998764

>smart00443 G_patch glycine rich nucleic binding domain

Probab=99.41  E-value=2.5e-13  Score=80.59  Aligned_cols=45  Identities=47%  Similarity=0.897  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceecc
Q psy12790         18 LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGV   66 (98)
Q Consensus        18 i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~   66 (98)
                      ++++++|++||.+|||+ |.|||++.+||++||.+. .+.   .+.|||+
T Consensus         1 ~~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~-~~~---~~~GlG~   46 (47)
T smart00443        1 ISTSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAE-IKK---DRKGLGA   46 (47)
T ss_pred             CCcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEe-ecc---CCcCcCC
Confidence            46789999999999999 999999999999999974 442   4789986

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.

>KOG2809|consensus

Probab=99.06  E-value=1.1e-10  Score=93.93  Aligned_cols=49  Identities=39%  Similarity=0.710  Sum_probs=42.7

Q ss_pred             CCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790         16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL   68 (98)
Q Consensus        16 ~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~   68 (98)
                      -.++++.+|++||++|||+ |.|||++.||++.||.+. ++  + +..|||++.
T Consensus        21 w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs-~K--~-d~~GLGa~~   70 (326)
T KOG2809|consen   21 WSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVS-LK--N-DTLGLGADK   70 (326)
T ss_pred             hcccchHHHHHHHHHcCCccCCcccccccCCccceEEE-ec--c-CCcccCccc
Confidence            3568899999999999999 999999999999999974 54  3 468999975

>KOG2184|consensus

Probab=98.81  E-value=2.1e-09  Score=93.98  Aligned_cols=44  Identities=39%  Similarity=0.730  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceecc
Q psy12790         19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGV   66 (98)
Q Consensus        19 ~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~   66 (98)
                      ...+||.+||++|||+ |.|||++.|||++||+++ +|.+   +.|+|+
T Consensus       114 ~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq-~Rp~---rgg~Ga  158 (767)
T KOG2184|consen  114 GTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQ-LRPG---RGGLGA  158 (767)
T ss_pred             cccchhHHHHHHcCCccccccCccccccccHHhcc-cCcc---Cccccc
Confidence            5789999999999999 999999999999999995 8864   789997

>PF12656 G-patch_2: DExH-box splicing factor binding site

Probab=98.71  E-value=8.8e-09  Score=67.60  Aligned_cols=51  Identities=25%  Similarity=0.506  Sum_probs=43.4

Q ss_pred             CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCCC
Q psy12790         15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN   69 (98)
Q Consensus        15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~   69 (98)
                      ...++.+.||..||.-|||+ |+++|++.++.+.|+... .|..   +.|||++..
T Consensus        24 Y~~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~-~Rp~---~lGLGA~~~   75 (77)
T PF12656_consen   24 YEAVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPK-RRPK---GLGLGAKPA   75 (77)
T ss_pred             hhhCCHHHHHHHHHHHcCCCCCCCCCCCcccccCccccc-cccc---CcCCCcCCC
Confidence            34677889999999999999 999999999999999874 6643   799998753

>KOG2384|consensus

Probab=98.41  E-value=1.4e-07  Score=72.44  Aligned_cols=49  Identities=31%  Similarity=0.630  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCCC
Q psy12790         17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN   69 (98)
Q Consensus        17 ~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~   69 (98)
                      .|+.+|+|+++|-+.||+ +.|||.+++|+..||.+  +..+  ++.|||++..
T Consensus       124 ~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrT--vlkk--dr~GLG~e~~  173 (223)
T KOG2384|consen  124 LIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRT--VLKK--DRIGLGTEID  173 (223)
T ss_pred             cCCCCCchHHHHHhcCCCcccCCCccccCcccchhH--HHhh--cccccchhhc
Confidence            468999999999999999 99999999999999997  4435  4899999753

>KOG3673|consensus

Probab=98.34  E-value=2.2e-07  Score=80.26  Aligned_cols=45  Identities=31%  Similarity=0.582  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790         20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL   68 (98)
Q Consensus        20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~   68 (98)
                      .+++..+||.|||++ |+|||+.+||+.+||.+..++    .|.|||+..
T Consensus        82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~----GRrGlGl~l  127 (845)
T KOG3673|consen   82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQR----GRRGLGLNL  127 (845)
T ss_pred             cchHHHHHHHHhCccccccccccCCCccchhhhhhhc----cccccCccc
Confidence            678999999999999 999999999999999986433    489999864

>KOG2185|consensus

Probab=98.28  E-value=3.4e-07  Score=76.28  Aligned_cols=33  Identities=36%  Similarity=0.710  Sum_probs=30.9

Q ss_pred             CCCHHHHHHHhcCCC-CCCCCCCCCccccceecc
Q psy12790         20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGG   52 (98)
Q Consensus        20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~   52 (98)
                      +-.||.+||.||||. |.|||+.++||++||.+.
T Consensus       296 TRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~  329 (486)
T KOG2185|consen  296 TRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAK  329 (486)
T ss_pred             cchHHHHHHHHhchhhccccCcCCCccccchhhh
Confidence            447999999999999 999999999999999986

>KOG1994|consensus

Probab=98.11  E-value=1.8e-06  Score=67.65  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCHHHHHHHhcCCC-CCCCCCCCCc---cccceecceeeccCCCcceeccC
Q psy12790         13 SGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQG---IEAPISGGEVREREDLYKGVGVS   67 (98)
Q Consensus        13 ~~~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qG---i~ePI~~~~~r~~~~~r~GlG~~   67 (98)
                      ++..+|..+++||.+|.+|||+ |.-||++..+   |++||+. .++.   +|.|+|.+
T Consensus        73 ~~~~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~-dI~~---~r~g~G~e  127 (268)
T KOG1994|consen   73 TKRRGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWY-DIQV---AREGMGDE  127 (268)
T ss_pred             hccccccccCcChHHHHHhCCCccchhccccccccccccceee-hHHH---HhhccCcc
Confidence            4566777999999999999999 9999999988   9999998 4774   59999985

>KOG1996|consensus

Probab=98.08  E-value=3.5e-06  Score=68.29  Aligned_cols=38  Identities=29%  Similarity=0.622  Sum_probs=32.0

Q ss_pred             CHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcce
Q psy12790         22 NKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKG   63 (98)
Q Consensus        22 n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~G   63 (98)
                      .+.++||+||||+ |+|||+++||+..|+.+.    +.+-|.|
T Consensus       213 tvA~~im~k~G~keGqGLGKsEQGlsTalsve----KT~~rgG  251 (378)
T KOG1996|consen  213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVE----KTSKRGG  251 (378)
T ss_pred             hHHHHHHHHhCcccccCcCccccccccceeee----eccccCc
Confidence            4778999999999 999999999999999874    2334666

>KOG0154|consensus

Probab=98.02  E-value=2.8e-06  Score=71.50  Aligned_cols=49  Identities=45%  Similarity=0.809  Sum_probs=43.2

Q ss_pred             CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790         15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS   67 (98)
Q Consensus        15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~   67 (98)
                      ..+|+.+|+|.+||++|||. |.|||...+||++||++. .+.   .+.|||..
T Consensus       506 ~~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~-~~~---~~~~lg~~  555 (573)
T KOG0154|consen  506 EPPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAE-GRD---RGAGLGAK  555 (573)
T ss_pred             cccCCCCccchhhhhccCcccccccccccCCCccccccc-ccc---cCCCCCcc
Confidence            34578999999999999999 999999999999999985 554   37899987

>KOG4315|consensus

Probab=96.99  E-value=0.00055  Score=57.41  Aligned_cols=48  Identities=29%  Similarity=0.558  Sum_probs=38.2

Q ss_pred             CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790         15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS   67 (98)
Q Consensus        15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~   67 (98)
                      ...|+...||..||.-|||+ |.|+|+++|+..--+.  ..|.+   ..|||++
T Consensus       148 yeaiPVe~FGlAmLrG~GWkpg~gigk~~q~v~~~~~--~~rpk---glGLGa~  196 (455)
T KOG4315|consen  148 YEAIPVEGFGLAMLRGMGWKPGPGIGKNKQDVKIKEP--FLRPK---GLGLGAD  196 (455)
T ss_pred             cccCchhHHHHHHHhcCCCCCCCCcCcCCcccccccc--ccCCC---CcccCCC
Confidence            45778899999999999999 9999999777544333  35655   5899987

>KOG2138|consensus

Probab=94.78  E-value=0.016  Score=51.64  Aligned_cols=20  Identities=40%  Similarity=1.022  Sum_probs=18.5

Q ss_pred             CCCHHHHHHHhcCCC-CCCCC
Q psy12790         20 ESNKGHQMLKRMGWG-GAGLG   39 (98)
Q Consensus        20 ~~n~G~kmL~KMGW~-G~GLG   39 (98)
                      ...||.+||.+|||+ |+|+|
T Consensus       147 s~sIgvrlLrsMGWr~GqgIg  167 (883)
T KOG2138|consen  147 SDSIGVRLLRSMGWREGQGIG  167 (883)
T ss_pred             hhhHHHHHHHHhcCccCCCcC
Confidence            467999999999999 99999

>KOG1994|consensus

Probab=88.08  E-value=0.27  Score=38.92  Aligned_cols=45  Identities=24%  Similarity=0.466  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790         20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL   68 (98)
Q Consensus        20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~   68 (98)
                      ...++++||+-|||+ |.-||....-+.+|+++- .+..   +.||+++.
T Consensus        37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~l-a~~~---~~~i~~e~   82 (268)
T KOG1994|consen   37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVL-ANTK---RRGIRAEK   82 (268)
T ss_pred             hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHh-hhhc---cccccccC
Confidence            355889999999999 999999999999999873 4433   67999865

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00