Psyllid ID: psy12798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILSSKH
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHHcccccccHHHHccccHHHHHHHccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHcHHHHHHHHHHHHHccccccccccccccccccEccccccccccccccccHccccccccccccccccccccccHHHHHHHHHcccccccHHHHHcHHHHHHHHHcccccccccccccccccHHHHHHccccccEEEcccccccEEcHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSFGSISIEAHTTLAKAMNKigaksntgeggenperylssgdenQRSAIKQVAsgrfgvtssylahaDDLQIKMADENQRSAIKQVAsgrfgvtssylaHADDLQIKmaqgakpgeggelpgykvtkdiastrhsvpgafqcypkfqdyTVVKELFSLILAVSRILSSKH
Flexible Loop (DISEMBL)
MSFGSISIEAHTTLAKAMnkigaksntgeggenPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILSSKH
Low Complexity Region (SEG)
MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILSSKH
Disordered region (IsUnstruct)
********************************************************FGVTSSYLAHADDLQ**************VASGRFGVTSSYLAHADDLQI****************YKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRIL****
Disordered Region (DISOPRED)
*SFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE**********SGRFGVTSSYLAHADDLQ*********SAIKQVASGRFGVTSSYLAHADDLQIKMAQ*A*****GELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAV*RI*****
Disordered Region (DISEMBL)
MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILSSKH
Disordered Region (DISPRO)
**********HTTLAKAMNKIG**********NPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRIL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILSSKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q0JKD0	2167	Glutamate synthase 1 [NAD	yes	N/A	0.741	0.058	0.518	4e-34
Q03460	2194	Glutamate synthase [NADH]	N/A	N/A	0.741	0.057	0.512	5e-33
Q9C102	2111	Putative glutamate syntha	yes	N/A	0.741	0.059	0.506	5e-33
Q12680	2145	Glutamate synthase [NADH]	yes	N/A	0.741	0.058	0.5	7e-33
Q9LV03	2208	Glutamate synthase 1 [NAD	yes	N/A	0.735	0.056	0.503	1e-31
P55037	1550	Ferredoxin-dependent glut	N/A	N/A	0.735	0.080	0.481	2e-30
P96218	1527	Glutamate synthase [NADPH	yes	N/A	0.741	0.082	0.468	3e-30
Q05755	1515	Glutamate synthase [NADPH	yes	N/A	0.776	0.087	0.451	1e-29
P55038	1556	Ferredoxin-dependent glut	N/A	N/A	0.882	0.096	0.469	1e-29
Q1XDB2	1538	Ferredoxin-dependent glut	N/A	N/A	0.882	0.097	0.463	2e-29

>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 97/162 (59%), Gaps = 36/162 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
            MS+GSIS+EAHT LA AMNK+G KSNTGEGGE P R   L++G  N +            
Sbjct: 999  MSYGSISLEAHTALAMAMNKLGGKSNTGEGGEQPSRMEPLANGSMNPK------------ 1046

Query: 59   VTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGG 118
                                 RSAIKQVASGRFGV+S YL +AD+LQIKMAQGAKPGEGG
Sbjct: 1047 ---------------------RSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGG 1085

Query: 119  ELPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            ELPG+KV  DIA TRHS  G      P   D   +++L  LI
Sbjct: 1086 ELPGHKVIGDIAVTRHSTAGVGLISPPPHHDIYSIEDLAQLI 1127

Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4

>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 95/162 (58%), Gaps = 36/162 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
            MS+GSIS+EAHT LA AMN IG KSNTGEGGE P R   L+ G  N +            
Sbjct: 1000 MSYGSISLEAHTALATAMNTIGGKSNTGEGGEQPSRMEPLADGSRNPK------------ 1047

Query: 59   VTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGG 118
                                 RSAIKQVASGRFGV+S YL +AD+LQIKMAQGAKPGEGG
Sbjct: 1048 ---------------------RSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGG 1086

Query: 119  ELPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            ELPG+KV  DIA TR+S  G      P   D   +++L  LI
Sbjct: 1087 ELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLI 1128

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS+GSIS+E+H++LA AMN++G KSNTGEGGE+P R                        
Sbjct: 948  MSYGSISMESHSSLAIAMNRLGGKSNTGEGGEDPAR------------------------ 983

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
            S  LA+ D +         RSAIKQ+ASGRFGVTS YL+ AD+LQIKMAQGAKPGEGGEL
Sbjct: 984  SQRLANGDTM---------RSAIKQIASGRFGVTSWYLSDADELQIKMAQGAKPGEGGEL 1034

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            PG KV++ IA TRHS  G      P   D   +++L  LI
Sbjct: 1035 PGNKVSESIAKTRHSTAGVGLISPPPHHDIYSIEDLKQLI 1074

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS+GSIS+EAH+TLA AMN++GAKSN GEGGE+ ER          SA+++         
Sbjct: 941  MSYGSISMEAHSTLAIAMNRLGAKSNCGEGGEDAER----------SAVQENG------- 983

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                            +  RSAIKQVAS RFGVTS YL+ AD++QIK+AQGAKPGEGGEL
Sbjct: 984  ----------------DTMRSAIKQVASARFGVTSYYLSDADEIQIKIAQGAKPGEGGEL 1027

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            P +KV+KDIA TRHS P       P   D   +++L  LI
Sbjct: 1028 PAHKVSKDIAKTRHSTPNVGLISPPPHHDIYSIEDLKQLI 1067

Forms L-glutamate from L-glutamine and 2-oxoglutarate. Represents an alternative pathway to L-glutamate dehydrogenase for the biosynthesis of L-glutamate. Participates with glutamine synthetase in ammonia assimilation processes. The enzyme is specific for NADH, L-glutamine and 2-oxoglutarate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 97/163 (59%), Gaps = 38/163 (23%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDEN-QRSAIKQVASGRF 57
            MS+GSIS+EAHTTLA AMNK+G KSNTGEGGE P R   L+ G  N +RS+IKQ+ASGRF
Sbjct: 1018 MSYGSISLEAHTTLAMAMNKLGGKSNTGEGGELPSRMEPLADGSRNPKRSSIKQIASGRF 1077

Query: 58   GVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEG 117
            GV+S YL +AD+LQ                                  IKMAQGAKPGEG
Sbjct: 1078 GVSSYYLTNADELQ----------------------------------IKMAQGAKPGEG 1103

Query: 118  GELPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            GELPG+KV  DIA TR+S  G      P   D   +++L  LI
Sbjct: 1104 GELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLI 1146

Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 94/162 (58%), Gaps = 37/162 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD--ENQRSAIKQVASGRFG 58
            MS+GSIS EAH +LA AMN+IG KSNTGEGGE+PER+  + D  +++ SAIKQVASGRFG
Sbjct: 905  MSYGSISKEAHESLAIAMNRIGGKSNTGEGGEDPERFTWTNDQGDSKNSAIKQVASGRFG 964

Query: 59   VTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGG 118
            VTS YL+ A ++Q                                  IKMAQGAKPGEGG
Sbjct: 965  VTSLYLSQAKEIQ----------------------------------IKMAQGAKPGEGG 990

Query: 119  ELPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            +LPG KV   IA  RHS PG      P   D   +++L  LI
Sbjct: 991  QLPGKKVYPWIAKVRHSTPGVGLISPPPHHDIYSIEDLAELI 1032

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 4

EC: .

EC: 7

EC: .

EC: 1

>sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis GN=gltB PE=1 SV=3

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 91/160 (56%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS+GSIS EAH TLA AMN++GA+SN GEGGE+ +R+    + + R              
Sbjct: 892  MSYGSISAEAHETLAIAMNRLGARSNCGEGGEDVKRFDRDPNGDWR-------------- 937

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                               RSAIKQVAS RFGVTS YL +  DLQIKMAQGAKPGEGG+L
Sbjct: 938  -------------------RSAIKQVASARFGVTSHYLTNCTDLQIKMAQGAKPGEGGQL 978

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            PG+KV   +A  RHS PG      P   D   +++L  LI
Sbjct: 979  PGHKVYPWVAEVRHSTPGVGLISPPPHHDIYSIEDLAQLI 1018

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 34/166 (20%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    D+N                
Sbjct: 894  MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP--DKN---------------- 935

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                            +N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG+L
Sbjct: 936  ---------------GDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 980

Query: 121  PGYKVTKDIASTRHSVPGAFQCY-PKFQDYTVVKELFSLILAVSRI 165
            PG+KVT+ IA  RHS PG      P   D   +++L  LI  + +I
Sbjct: 981  PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQI 1026

Azospirillum brasilense (taxid: 192)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P55038|GLTS_SYNY3 Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gltS PE=1 SV=2

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 97/166 (58%), Gaps = 16/166 (9%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS G++S EAH TLA AMN++GAKSN+GEGGE+  RYL+  D +                
Sbjct: 911  MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEG------------N 958

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
            S  L H   LQ     +   SAIKQ+ASGRFGVT  YL     L+IKMAQGAKPGEGG+L
Sbjct: 959  SPTLPHLHGLQ---NGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 1015

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
            PG KV++ IA  R S PG      P   D   +++L  LI  + +I
Sbjct: 1016 PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQI 1061

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 4

EC: .

EC: 7

EC: .

EC: 1

>sp|Q1XDB2|GLTB_PORYE Ferredoxin-dependent glutamate synthase OS=Porphyra yezoensis GN=gltB PE=3 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 16/166 (9%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS G++S E H TLA AMN+IG KSN+GEGGE+P R+    D N        +SG    T
Sbjct: 900  MSLGALSRETHETLAIAMNRIGGKSNSGEGGEDPVRFKILNDVN--------SSG----T 947

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
            S  L H   L+     +   SAIKQ+ASGRFGVT  YL +A  L+IK+AQGAKPGEGG+L
Sbjct: 948  SPLLPHLKGLK---NGDTASSAIKQIASGRFGVTPEYLMNAKQLEIKIAQGAKPGEGGQL 1004

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
            PG K++  IA+ R   PG      P   D   +++L  LI  + +I
Sbjct: 1005 PGKKISPYIATLRKCKPGVPLISPPPHHDIYSIEDLSQLIFDLHQI 1050

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 4

EC: .

EC: 7

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
328721168	2080	PREDICTED: putative glutamate synthase [	0.741	0.060	0.6	3e-42
443695222	2047	hypothetical protein CAPTEDRAFT_177943 [	0.741	0.061	0.587	6e-40
345480329	2007	PREDICTED: putative glutamate synthase [	0.741	0.062	0.606	8e-40
380019061	2066	PREDICTED: putative glutamate synthase [	0.735	0.060	0.583	9e-39
242015925	2068	ferredoxin-dependent glutamate synthase	0.735	0.060	0.583	1e-38
260834439	2071	hypothetical protein BRAFLDRAFT_129259 [	0.735	0.060	0.577	1e-38
350405946	2065	PREDICTED: putative glutamate synthase [	0.735	0.060	0.577	2e-38
340711712	2066	PREDICTED: putative glutamate synthase [	0.735	0.060	0.577	2e-38
350405948	2065	PREDICTED: putative glutamate synthase [	0.735	0.060	0.577	2e-38
328792962	1910	PREDICTED: putative glutamate synthase [	0.735	0.065	0.577	2e-38

>gi|328721168|ref|XP_001948786.2| PREDICTED: putative glutamate synthase [NADPH]-like [Acyrthosiphon pisum]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 106/160 (66%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS GSISIEAHT+LA AMNK+G KSNTGEGGEN +RYL+   EN                
Sbjct: 923  MSLGSISIEAHTSLAIAMNKLGGKSNTGEGGENSDRYLNQDSEN---------------- 966

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                             N+RSAIKQVASGRFGVTSSYLAHADD+QIKMAQGAKPGEGGEL
Sbjct: 967  -----------------NKRSAIKQVASGRFGVTSSYLAHADDIQIKMAQGAKPGEGGEL 1009

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            PGYKVTKDIA+TRHSVPG      P   D   +++L  LI
Sbjct: 1010 PGYKVTKDIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1049

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|443695222|gb|ELT96170.1| hypothetical protein CAPTEDRAFT_177943 [Capitella teleta]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 103/160 (64%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MSFGSIS EAHTTLA AMNK+GAKSNTGEGGE  ERY +   E                 
Sbjct: 889  MSFGSISWEAHTTLAMAMNKVGAKSNTGEGGEVSERYSNQDPE----------------- 931

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                            +N RSAIKQVASGRFGVTSSYL+HAD+LQIKMAQGAKPGEGGEL
Sbjct: 932  ----------------KNMRSAIKQVASGRFGVTSSYLSHADELQIKMAQGAKPGEGGEL 975

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            PGYKVTKDIA TRHS+PG      P   D   +++L  LI
Sbjct: 976  PGYKVTKDIARTRHSIPGVGLISPPPHHDIYSIEDLAELI 1015

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|345480329|ref|XP_001605708.2| PREDICTED: putative glutamate synthase [NADPH]-like [Nasonia vitripennis]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 106/160 (66%), Gaps = 34/160 (21%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MSFGSIS+EAH TLA AMN+IG KSNTGEGGEN +RYL     NQ               
Sbjct: 918  MSFGSISLEAHQTLAIAMNRIGGKSNTGEGGENADRYL-----NQ--------------- 957

Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                    D Q      N+RSAIKQVASGRFGVTSSYLA+ADDLQIKMAQGAKPGEGGEL
Sbjct: 958  --------DPQF-----NRRSAIKQVASGRFGVTSSYLANADDLQIKMAQGAKPGEGGEL 1004

Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            PGYKVT DIA+TRHSVPG      P   D   +++L  LI
Sbjct: 1005 PGYKVTADIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1044

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|380019061|ref|XP_003693435.1| PREDICTED: putative glutamate synthase [NADPH]-like [Apis florea]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 104/161 (64%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-NQRSAIKQVASGRFGV 59
            MSFGSISIEAHTTLA AMN IG KSNTGEGGEN +RYL+   E N+RSAIKQVASGRFGV
Sbjct: 918  MSFGSISIEAHTTLAIAMNNIGGKSNTGEGGENADRYLNQNPEFNKRSAIKQVASGRFGV 977

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TSSYLA+ADDLQ                                  IKM+QGAKPGEGGE
Sbjct: 978  TSSYLANADDLQ----------------------------------IKMSQGAKPGEGGE 1003

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPGYKVT +IA+TRHSVPG      P   D   +++L  LI
Sbjct: 1004 LPGYKVTAEIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1044

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|242015925|ref|XP_002428593.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis] gi|212513237|gb|EEB15855.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 103/161 (63%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSG-DENQRSAIKQVASGRFGV 59
            MSFGSISIEAHTTLA AMNK+G KSNTGEGGE PERYL++    N  SAIKQVASGRFGV
Sbjct: 906  MSFGSISIEAHTTLALAMNKMGGKSNTGEGGEQPERYLTANTPHNINSAIKQVASGRFGV 965

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TSSYLAHA+DLQ                                  IKMAQGAKPGEGGE
Sbjct: 966  TSSYLAHAEDLQ----------------------------------IKMAQGAKPGEGGE 991

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPG+KV+KDIA TRHSVPG      P   D   +++L  LI
Sbjct: 992  LPGHKVSKDIAKTRHSVPGVGLISPPPHHDIYSIEDLAQLI 1032

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260834439|ref|XP_002612218.1| hypothetical protein BRAFLDRAFT_129259 [Branchiostoma floridae] gi|229297593|gb|EEN68227.1| hypothetical protein BRAFLDRAFT_129259 [Branchiostoma floridae]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 102/161 (63%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSG-DENQRSAIKQVASGRFGV 59
            MSFGSISIE HTTLAKAMN++GAKSNTGEGGENPERY     D + RSAIKQVASGRFGV
Sbjct: 897  MSFGSISIETHTTLAKAMNRVGAKSNTGEGGENPERYQDQPVDNSTRSAIKQVASGRFGV 956

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TS YLAH+DDLQ                                  IKMAQGAKPGEGGE
Sbjct: 957  TSDYLAHSDDLQ----------------------------------IKMAQGAKPGEGGE 982

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPG+KV+KDIA TR SVPG      P   D   +++L  LI
Sbjct: 983  LPGHKVSKDIAKTRKSVPGVGLISPPPHHDIYSIEDLAELI 1023

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350405946|ref|XP_003487603.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 1 [Bombus impatiens]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 105/161 (65%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-NQRSAIKQVASGRFGV 59
            MSFGSISIEAHTTLA AMN+IG KSNTGEGGEN +RYL+   E N+RS+IKQVASGRFGV
Sbjct: 914  MSFGSISIEAHTTLAIAMNRIGGKSNTGEGGENADRYLNQDPEFNKRSSIKQVASGRFGV 973

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TSSYLA+ADDLQ                                  IKM+QGAKPGEGGE
Sbjct: 974  TSSYLANADDLQ----------------------------------IKMSQGAKPGEGGE 999

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPGYKVT +IA+TRHSVPG      P   D   +++L  LI
Sbjct: 1000 LPGYKVTAEIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1040

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340711712|ref|XP_003394415.1| PREDICTED: putative glutamate synthase [NADPH]-like [Bombus terrestris]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 105/161 (65%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-NQRSAIKQVASGRFGV 59
            MSFGSISIEAHTTLA AMN+IG KSNTGEGGEN +RYL+   E N+RS+IKQVASGRFGV
Sbjct: 915  MSFGSISIEAHTTLAIAMNRIGGKSNTGEGGENADRYLNQDPEFNKRSSIKQVASGRFGV 974

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TSSYLA+ADDLQ                                  IKM+QGAKPGEGGE
Sbjct: 975  TSSYLANADDLQ----------------------------------IKMSQGAKPGEGGE 1000

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPGYKVT +IA+TRHSVPG      P   D   +++L  LI
Sbjct: 1001 LPGYKVTAEIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1041

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350405948|ref|XP_003487604.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 2 [Bombus impatiens]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 105/161 (65%), Gaps = 36/161 (22%)

Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-NQRSAIKQVASGRFGV 59
            MSFGSISIEAHTTLA AMN+IG KSNTGEGGEN +RYL+   E N+RS+IKQVASGRFGV
Sbjct: 914  MSFGSISIEAHTTLAIAMNRIGGKSNTGEGGENADRYLNQDPEFNKRSSIKQVASGRFGV 973

Query: 60   TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
            TSSYLA+ADDLQ                                  IKM+QGAKPGEGGE
Sbjct: 974  TSSYLANADDLQ----------------------------------IKMSQGAKPGEGGE 999

Query: 120  LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
            LPGYKVT +IA+TRHSVPG      P   D   +++L  LI
Sbjct: 1000 LPGYKVTAEIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 1040

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|328792962|ref|XP_396817.3| PREDICTED: putative glutamate synthase [NADPH]-like isoform 1 [Apis mellifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 104/161 (64%), Gaps = 36/161 (22%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-NQRSAIKQVASGRFGV 59
           MSFGSIS+EAHTTLA AMN IG KSNTGEGGEN +RYL+   E N+RSAIKQVASGRFGV
Sbjct: 759 MSFGSISMEAHTTLAIAMNNIGGKSNTGEGGENADRYLNQNPEFNKRSAIKQVASGRFGV 818

Query: 60  TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGE 119
           TSSYLA+ADDLQ                                  IKM+QGAKPGEGGE
Sbjct: 819 TSSYLANADDLQ----------------------------------IKMSQGAKPGEGGE 844

Query: 120 LPGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLI 159
           LPGYKVT +IA+TRHSVPG      P   D   +++L  LI
Sbjct: 845 LPGYKVTAEIAATRHSVPGVGLISPPPHHDIYSIEDLAELI 885

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2040317	1629	GLU2 "glutamate synthase 2" [A	0.876	0.091	0.457	1.3e-25
TAIR|locus:2146718	1648	GLU1 "glutamate synthase 1" [A	0.876	0.090	0.463	9.3e-25
FB|FBgn0036663	2114	CG9674 [Drosophila melanogaste	0.494	0.039	0.705	1.9e-23
WB|WBGene00012326	2175	W07E11.1 [Caenorhabditis elega	0.441	0.034	0.779	6.6e-23
UNIPROTKB|Q9KPJ4	1530	VC_2373 "Glutamate synthase, l	0.441	0.049	0.710	6.3e-22
TIGR_CMR|VC_2373	1530	VC_2373 "glutamate synthase, l	0.441	0.049	0.710	6.3e-22
UNIPROTKB|Q0JKD0	2167	LOC_Os01g48960 "Glutamate synt	0.441	0.034	0.717	7.2e-22
TAIR|locus:2178461	2208	GLT1 "NADH-dependent glutamate	0.441	0.033	0.705	9.5e-22
ASPGD|ASPL0000027159	2126	gltA [Emericella nidulans (tax	0.435	0.034	0.714	2e-21
TIGR_CMR|CPS_0761	1535	CPS_0761 "putative glutamate s	0.435	0.048	0.740	3.5e-21

TAIR|locus:2040317 GLU2 "glutamate synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 76/166 (45%), Positives = 100/166 (60%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
             MS G+IS E H T+A AMN++G KSN+GEGGE+P R+           +  V  G     
Sbjct:   978 MSLGAISRETHETIAIAMNRLGGKSNSGEGGEDPIRW---------KPLTDVVDGY---- 1024

Query:    61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
             SS L H   L+     +   SAIKQVASGRFGVT ++L +AD L+IK+AQGAKPGEGG+L
Sbjct:  1025 SSTLPHLKGLR---NGDTATSAIKQVASGRFGVTPTFLVNADQLEIKVAQGAKPGEGGQL 1081

Query:   121 PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
             PG KV+  IA  R+S PG      P   D   +++L  LI  + ++
Sbjct:  1082 PGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQV 1127

GO:0003824 "catalytic activity" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0016041 "glutamate synthase (ferredoxin) activity" evidence=ISS

TAIR|locus:2146718 GLU1 "glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 9.3e-25, P = 9.3e-25
 Identities = 77/166 (46%), Positives = 97/166 (58%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
             MS G+IS E H  +A AMN+IG KSN+GEGGE+P R+           +  V  G     
Sbjct:  1002 MSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRW---------KPLTDVVDGY---- 1048

Query:    61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
             S  L H   LQ     +   SAIKQVASGRFGVT ++L +AD L+IK+AQGAKPGEGG+L
Sbjct:  1049 SPTLPHLKGLQ---NGDIATSAIKQVASGRFGVTPTFLVNADQLEIKVAQGAKPGEGGQL 1105

Query:   121 PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
             PG KV+  IA  R S PG      P   D   +++L  LI  + +I
Sbjct:  1106 PGKKVSAYIARLRSSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQI 1151

GO:0003824 "catalytic activity" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP;TAS

GO:0016041 "glutamate synthase (ferredoxin) activity" evidence=ISS;IDA

GO:0080114 "positive regulation of glycine hydroxymethyltransferase activity" evidence=IDA

GO:0006833 "water transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 60/85 (70%), Positives = 68/85 (80%)

Query:    76 DENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHS 135
             + ++RSAIKQVASGRFGVT+SYLA+ADDLQIKMAQGAKPGEGGELPGYKVTKDIA TR S
Sbjct:  1000 NNSRRSAIKQVASGRFGVTASYLANADDLQIKMAQGAKPGEGGELPGYKVTKDIAKTRKS 1059

Query:   136 VPGA-FQCYPKFQDYTVVKELFSLI 159
             VPG      P   D   +++L  LI
Sbjct:  1060 VPGVGLISPPPHHDIYSIEDLAELI 1084

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 281 (104.0 bits), Expect = 6.6e-23, P = 6.6e-23
 Identities = 60/77 (77%), Positives = 63/77 (81%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQ--RSAIKQVASGRFG 58
             MSFGSIS E HT LA AMN+IG KSNTGEGGE PERY    D NQ  RSAIKQVAS RFG
Sbjct:   916 MSFGSISWETHTALAIAMNRIGGKSNTGEGGEKPERYRKDQDPNQNLRSAIKQVASARFG 975

Query:    59 VTSSYLAHADDLQIKMA 75
             VTSSYLA+AD+LQIKMA
Sbjct:   976 VTSSYLANADELQIKMA 992

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|Q9KPJ4 VC_2373 "Glutamate synthase, large subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 270 (100.1 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 54/76 (71%), Positives = 68/76 (89%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY-LSSGDENQRSAIKQVASGRFGV 59
             MSFGSIS EAH+TLA AMN++GAKSN+GEGGE+P R+ L++  +++RSAIKQVASGRFGV
Sbjct:   905 MSFGSISYEAHSTLAIAMNRLGAKSNSGEGGEDPMRFELNANGDSERSAIKQVASGRFGV 964

Query:    60 TSSYLAHADDLQIKMA 75
             TS YL +AD++QIKMA
Sbjct:   965 TSYYLTNADEIQIKMA 980

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0015930 "glutamate synthase activity" evidence=ISS

TIGR_CMR|VC_2373 VC_2373 "glutamate synthase, large subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 270 (100.1 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 54/76 (71%), Positives = 68/76 (89%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY-LSSGDENQRSAIKQVASGRFGV 59
             MSFGSIS EAH+TLA AMN++GAKSN+GEGGE+P R+ L++  +++RSAIKQVASGRFGV
Sbjct:   905 MSFGSISYEAHSTLAIAMNRLGAKSNSGEGGEDPMRFELNANGDSERSAIKQVASGRFGV 964

Query:    60 TSSYLAHADDLQIKMA 75
             TS YL +AD++QIKMA
Sbjct:   965 TSYYLTNADEIQIKMA 980

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0015930 "glutamate synthase activity" evidence=ISS

UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 265 (98.3 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
 Identities = 56/78 (71%), Positives = 65/78 (83%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDEN-QRSAIKQVASGRF 57
             MS+GSIS+EAHT LA AMNK+G KSNTGEGGE P R   L++G  N +RSAIKQVASGRF
Sbjct:   999 MSYGSISLEAHTALAMAMNKLGGKSNTGEGGEQPSRMEPLANGSMNPKRSAIKQVASGRF 1058

Query:    58 GVTSSYLAHADDLQIKMA 75
             GV+S YL +AD+LQIKMA
Sbjct:  1059 GVSSYYLTNADELQIKMA 1076

GO:0006537 "glutamate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IEP

TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 9.5e-22, Sum P(2) = 9.5e-22
 Identities = 55/78 (70%), Positives = 65/78 (83%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDEN-QRSAIKQVASGRF 57
             MS+GSIS+EAHTTLA AMNK+G KSNTGEGGE P R   L+ G  N +RS+IKQ+ASGRF
Sbjct:  1018 MSYGSISLEAHTTLAMAMNKLGGKSNTGEGGELPSRMEPLADGSRNPKRSSIKQIASGRF 1077

Query:    58 GVTSSYLAHADDLQIKMA 75
             GV+S YL +AD+LQIKMA
Sbjct:  1078 GVSSYYLTNADELQIKMA 1095

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IDA;IMP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IDA;IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009536 "plastid" evidence=TAS

ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)]

 Score = 267 (99.0 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 55/77 (71%), Positives = 66/77 (85%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
             MS+GSIS+E+H+TLA AMN++G KSNTGEGGE+PER   + +GD   RSAIKQ+ASGRFG
Sbjct:   940 MSYGSISMESHSTLAVAMNRLGGKSNTGEGGEDPERSKRMENGD-TMRSAIKQIASGRFG 998

Query:    59 VTSSYLAHADDLQIKMA 75
             VTS YLA AD+LQIKMA
Sbjct:   999 VTSHYLADADELQIKMA 1015

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISA;RCA;IMP

GO:0009064 "glutamine family amino acid metabolic process" evidence=IGI;RCA;IMP

GO:0005829 "cytosol" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

TIGR_CMR|CPS_0761 CPS_0761 "putative glutamate synthase, ferredoxin-dependent" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 263 (97.6 bits), Expect = 3.5e-21, P = 3.5e-21
 Identities = 57/77 (74%), Positives = 64/77 (83%)

Query:     1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
             MSFGSIS EAHTTLA AMN+IG KSN+GEGGE+P RY  L +GD +  S IKQVASGRFG
Sbjct:   890 MSFGSISWEAHTTLAIAMNRIGGKSNSGEGGEDPIRYTPLENGD-SMNSRIKQVASGRFG 948

Query:    59 VTSSYLAHADDLQIKMA 75
             VTS YL +AD+LQIKMA
Sbjct:   949 VTSHYLTNADELQIKMA 965

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0016041 "glutamate synthase (ferredoxin) activity" evidence=ISS

GO:0019676 "ammonia assimilation cycle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C102	GLT1_SCHPO	1, ., 4, ., 1, ., 1, 3	0.5062	0.7411	0.0596	yes	N/A
Q9LV03	GLUT1_ARATH	1, ., 4, ., 1, ., 1, 4	0.5030	0.7352	0.0566	yes	N/A
Q0JKD0	GLT1_ORYSJ	1, ., 4, ., 1, ., 1, 4	0.5185	0.7411	0.0581	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
COG0069	485	COG0069, GltB, Glutamate synthase domain 2 [Amino	7e-49
pfam01645	367	pfam01645, Glu_synthase, Conserved region in gluta	5e-48
cd02808	392	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b	5e-46
PRK11750	1485	PRK11750, gltB, glutamate synthase subunit alpha;	5e-45

>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]

 Score =  163 bits (416), Expect = 7e-49
 Identities = 74/138 (53%), Positives = 86/138 (62%), Gaps = 39/138 (28%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MSFG++S EAH  LA+AMN+IG KSNTGEGGE+PERY                       
Sbjct: 174 MSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERY----------------------- 210

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                           E+ RSAIKQVASGRFGVT  YLA+AD ++IK+AQGAKPGEGG+L
Sbjct: 211 ----------------EDGRSAIKQVASGRFGVTPEYLANADAIEIKIAQGAKPGEGGQL 254

Query: 121 PGYKVTKDIASTRHSVPG 138
           PG KVT +IA TR S PG
Sbjct: 255 PGEKVTPEIAKTRGSPPG 272

Length = 485

>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase

 Score =  159 bits (403), Expect = 5e-48
 Identities = 67/138 (48%), Positives = 80/138 (57%), Gaps = 38/138 (27%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS+G++S EAH  LAKAMN++G KSNTGEGGE+PER   + D                  
Sbjct: 72  MSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAAD------------------ 113

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                                AIKQVASGRFGVT  YL +AD ++IK+AQGAKPGEGG L
Sbjct: 114 --------------------GAIKQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHL 153

Query: 121 PGYKVTKDIASTRHSVPG 138
           PG KV+ +IA  R S PG
Sbjct: 154 PGEKVSPEIARIRGSPPG 171

This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367

>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain

 Score =  154 bits (391), Expect = 5e-46
 Identities = 58/138 (42%), Positives = 65/138 (47%), Gaps = 39/138 (28%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MSFG++S EA   LA      G  SNTGEGGE PE                         
Sbjct: 85  MSFGALSKEAKEALAIGAALAGTASNTGEGGELPEER----------------------- 121

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                           E     IKQVASGRFGV   YL  AD ++IK+ QGAKPGEGG L
Sbjct: 122 ----------------EGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHL 165

Query: 121 PGYKVTKDIASTRHSVPG 138
           PG KVT++IA  R   PG
Sbjct: 166 PGEKVTEEIAKIRGIPPG 183

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392

>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional

 Score =  157 bits (400), Expect = 5e-45
 Identities = 65/138 (47%), Positives = 80/138 (57%), Gaps = 38/138 (27%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH  LA AMN++G +SN+GEGGE+P RY +                     
Sbjct: 866 MSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT--------------------- 904

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                             + S IKQVASGRFGVT +YL +A+ LQIK+AQGAKPGEGG+L
Sbjct: 905 -----------------EKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQL 947

Query: 121 PGYKVTKDIASTRHSVPG 138
           PG KV   IA  R+SVPG
Sbjct: 948 PGDKVNPLIARLRYSVPG 965

Length = 1485

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	100.0
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	100.0
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	100.0
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	100.0
KOG0399|consensus	2142		100.0
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	97.2
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	95.54
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	91.06
KOG0399|consensus	2142		90.36
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	89.37

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=100.00  E-value=6.3e-50  Score=355.57  Aligned_cols=130  Identities=48%  Similarity=0.724  Sum_probs=95.5

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCc-EEEecccccccccccccchhhhhhhhhhHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA-IKQVASGRFGVTSSYLAHADDLQIKMADENQ   79 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~-I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~   79 (170)
                      |||||||++|++|||+||+++||++||||||++|||+..     +.++ ||||+||+||||                   
T Consensus        73 MS~GaLS~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~~-----~~~~~I~Q~~sg~fGv~-------------------  128 (368)
T PF01645_consen   73 MSYGALSEEAKEALAKGANMAGTASNTGEGGELPEERKA-----AKDLRIKQIASGRFGVR-------------------  128 (368)
T ss_dssp             B-CTTC-HHHHHHHHHHHHHCT-EEEETTT---GGGCSB------TTSSEEEE-TT-TT---------------------
T ss_pred             CChhhcCHHHHHHHHHHHHHhCceEecCCCCCCHHHhcc-----cCCceEEEcCCCCCCCC-------------------
Confidence            999999999999999999999999999999999999764     5778 999777777765                   


Q ss_pred             HhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHH
Q psy12798         80 RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSL  158 (170)
Q Consensus        80 ~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~  158 (170)
                                     +++|.+++|||||||||||||+||+||++|||+|||++|+++||+++ ||++||||+|++||.+|
T Consensus       129 ---------------~~~l~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~  193 (368)
T PF01645_consen  129 ---------------PEYLKQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQL  193 (368)
T ss_dssp             ---------------HHHHCC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHH
T ss_pred             ---------------HHHhcCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHH
Confidence                           45588999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHhhCCC
Q psy12798        159 ILAVSRILSSK  169 (170)
Q Consensus       159 I~~Lr~~~~~~  169 (170)
                      |++||+++++|
T Consensus       194 I~~Lr~~~~~~  204 (368)
T PF01645_consen  194 IEELRELNPGK  204 (368)
T ss_dssp             HHHHHHH-TTS
T ss_pred             HHHHHhhCCCC
Confidence            99999999665

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-48  Score=355.87  Aligned_cols=130  Identities=60%  Similarity=0.869  Sum_probs=119.6

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR   80 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~   80 (170)
                      |||||||+||++|||+|++++|+.+||||||++|+++..     .+++|+||+||                         
T Consensus       174 MS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~~-----~~s~I~QvaSG-------------------------  223 (485)
T COG0069         174 MSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYED-----GRSAIKQVASG-------------------------  223 (485)
T ss_pred             cCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhcc-----ccceEEEeccc-------------------------
Confidence            999999999999999999999999999999999999842     57788885555                         


Q ss_pred             hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798         81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI  159 (170)
Q Consensus        81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I  159 (170)
                               ||||+++||.++++||||++||||||+|||||+.|||++||++|+++||+++ |||||||||||+||.+||
T Consensus       224 ---------RFGV~~~yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI  294 (485)
T COG0069         224 ---------RFGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLI  294 (485)
T ss_pred             ---------cCccCHHHhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHH
Confidence                     5555556799999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhhCCC
Q psy12798        160 LAVSRILSSK  169 (170)
Q Consensus       160 ~~Lr~~~~~~  169 (170)
                      ++||++++.+
T Consensus       295 ~dLk~~~~~~  304 (485)
T COG0069         295 KDLKEANPWA  304 (485)
T ss_pred             HHHHhcCCCC
Confidence            9999998654

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=100.00  E-value=1.8e-44  Score=358.41  Aligned_cols=130  Identities=54%  Similarity=0.814  Sum_probs=118.4

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR   80 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~   80 (170)
                      |||||||+||++|||+||+++|+.+||||||++|+|+..    ...++|+||+||+|                       
T Consensus       866 MSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~~----~~~~~i~QiaSGrF-----------------------  918 (1485)
T PRK11750        866 MSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT----EKVSKIKQVASGRF-----------------------  918 (1485)
T ss_pred             CCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHhc----ccCCeEEEccCCcC-----------------------
Confidence            999999999999999999999999999999999999743    23677888555555                       


Q ss_pred             hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798         81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI  159 (170)
Q Consensus        81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I  159 (170)
                                 ||++++|.+++|||||||||||||.||+||+.|||++||++|+++||+++ ||||||||||+|||.+||
T Consensus       919 -----------Gv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI  987 (1485)
T PRK11750        919 -----------GVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLI  987 (1485)
T ss_pred             -----------CCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHH
Confidence                       55556688999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhhCC
Q psy12798        160 LAVSRILSS  168 (170)
Q Consensus       160 ~~Lr~~~~~  168 (170)
                      ++||+++..
T Consensus       988 ~~Lk~~~~~  996 (1485)
T PRK11750        988 FDLKQVNPK  996 (1485)
T ss_pred             HHHHHhCCC
Confidence            999998764

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=100.00  E-value=2.5e-38  Score=281.91  Aligned_cols=129  Identities=48%  Similarity=0.688  Sum_probs=121.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR   80 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~   80 (170)
                      |||||+|++|+.|||.|++++|+.+||||||++|||+..     ..++|+|+++++|||+.+                  
T Consensus        85 Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg~~~~~~~~-----~~~~i~q~~~~~fGv~~~------------------  141 (392)
T cd02808          85 MSFGALSKEAKEALAIGAALAGTASNTGEGGELPEEREG-----GGDIIKQVASGRFGVRPE------------------  141 (392)
T ss_pred             CCCCcccHHHHHHHHHHHHhcCCceeecCCCCCHHHHhh-----hhheEEEecCCCCccCHH------------------
Confidence            999999999999999999999999999999999999753     589999999988888874                  


Q ss_pred             hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798         81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI  159 (170)
Q Consensus        81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I  159 (170)
                                      ++..++|||||++||||||+||+||++|||.|||.+|++++|+++ ||++||+|++++||.++|
T Consensus       142 ----------------~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I  205 (392)
T cd02808         142 ----------------YLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLI  205 (392)
T ss_pred             ----------------HcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHH
Confidence                            245589999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhhCC
Q psy12798        160 LAVSRILSS  168 (170)
Q Consensus       160 ~~Lr~~~~~  168 (170)
                      ++||+.+++
T Consensus       206 ~~lr~~~~~  214 (392)
T cd02808         206 EDLREATGG  214 (392)
T ss_pred             HHHHHhCCC
Confidence            999998863

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>KOG0399|consensus

Probab=100.00  E-value=6.8e-38  Score=304.52  Aligned_cols=134  Identities=62%  Similarity=0.860  Sum_probs=125.0

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR   80 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~   80 (170)
                      |||||+|.|++++||.|+++.|..+||||||..|++++..-                           |+.     ...+
T Consensus       962 MS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~---------------------------d~~-----d~~r 1009 (2142)
T KOG0399|consen  962 MSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLA---------------------------DGV-----DTMR 1009 (2142)
T ss_pred             ccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhccccc---------------------------ccc-----hHHH
Confidence            99999999999999999999999999999999999865311                           110     3578


Q ss_pred             hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798         81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI  159 (170)
Q Consensus        81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I  159 (170)
                      +.|+|+|||||||++.||.+||.+|||++||||||+||.||++||+..||++|+..+|+.+ ||||||||||+|||.++|
T Consensus      1010 SAIKQVASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLI 1089 (2142)
T KOG0399|consen 1010 SAIKQVASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLI 1089 (2142)
T ss_pred             HHHHHHhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhh
Q psy12798        160 LAVSRIL  166 (170)
Q Consensus       160 ~~Lr~~~  166 (170)
                      .+|+...
T Consensus      1090 yDLk~aN 1096 (2142)
T KOG0399|consen 1090 YDLKCAN 1096 (2142)
T ss_pred             HHhhccC
Confidence            9999854

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=97.20  E-value=0.00075  Score=60.09  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CCCC-cCCHHHHHHHHHHHHhhCCCCccCCCCC
Q psy12798          1 MSFG-SISIEAHTTLAKAMNKIGAKSNTGEGGE   32 (170)
Q Consensus         1 MSyG-ALS~~A~~ALa~ga~~~Gt~~nTGEGg~   32 (170)
                      |++| .++.+...+|++++..+|+++++|+.+.
T Consensus        68 MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~  100 (352)
T PRK05437         68 MTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA  100 (352)
T ss_pred             cCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence            8888 5788999999999999999999999983

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=95.54  E-value=0.035  Score=48.88  Aligned_cols=31  Identities=26%  Similarity=0.346  Sum_probs=27.5

Q ss_pred             CCCC-cCCHHHHHHHHHHHHhhCCCCccCCCC
Q psy12798          1 MSFG-SISIEAHTTLAKAMNKIGAKSNTGEGG   31 (170)
Q Consensus         1 MSyG-ALS~~A~~ALa~ga~~~Gt~~nTGEGg   31 (170)
                      |+.| ..+++...+|++++...|+++++|.++
T Consensus        60 mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~   91 (326)
T cd02811          60 MTGGSEKAKEINRNLAEAAEELGIAMGVGSQR   91 (326)
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCeEecCch
Confidence            7888 567778899999999999999999985

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=91.06  E-value=0.29  Score=43.99  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             CCCCcCC-HHHHHHHHHHHHhhCCCCc-cCCCCCCccccccCCCCcCCCcEEEe
Q psy12798          1 MSFGSIS-IEAHTTLAKAMNKIGAKSN-TGEGGENPERYLSSGDENQRSAIKQV   52 (170)
Q Consensus         1 MSyGALS-~~A~~ALa~ga~~~Gt~~n-TGEGg~~pe~~~~~~~~~~~~~I~Qi   52 (170)
                      |+|..|. +++-+|+|+||..+|+.++ |..+..+.|+.....  ..+...||+
T Consensus        80 ~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~--~~~~~wfQl  131 (351)
T cd04737          80 IAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKAS--NGGPKWFQL  131 (351)
T ss_pred             HHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhc--CCCCeEEEE
Confidence            4455553 4788999999999999888 899999999976421  023577774

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>KOG0399|consensus

Probab=90.36  E-value=0.054  Score=56.08  Aligned_cols=108  Identities=34%  Similarity=0.433  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHHhhhhhhhcCCc
Q psy12798         12 TTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRF   91 (170)
Q Consensus        12 ~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~~~~~q~a~grf   91 (170)
                      +|+++=-.+.+|.- -||-+.-...+.... +.....|.||+||+|||+.-|+..||+.+||++|.++.-.--|+..-+ 
T Consensus       977 IAMNRlGgKSNtGE-GGEdp~R~~~l~d~~-d~~rSAIKQVASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghK- 1053 (2142)
T KOG0399|consen  977 IAMNRLGGKSNTGE-GGEDPERSKPLADGV-DTMRSAIKQVASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHK- 1053 (2142)
T ss_pred             HHHHhhcCcCCCCC-CCCChhhcccccccc-hHHHHHHHHHhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcch-
Confidence            56666555665543 477777665555543 236788999999999999999999999999999988764433332110 


Q ss_pred             ccCcccccccCeeEEeecCCCCCCCCCCCCCCC----chHHHHHH
Q psy12798         92 GVTSSYLAHADDLQIKMAQGAKPGEGGELPGYK----VTKDIAST  132 (170)
Q Consensus        92 g~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~K----vt~eIA~~  132 (170)
                       |+. ++.        .-.-.+||.|=+-|+-.    --+++|++
T Consensus      1054 -Vs~-dIA--------~tR~St~gVgLISPPPHHDIYSIEDLaQL 1088 (2142)
T KOG0399|consen 1054 -VSA-DIA--------KTRHSTAGVGLISPPPHHDIYSIEDLAQL 1088 (2142)
T ss_pred             -hhH-HHH--------HhccCCCCCCcCCCCCccccccHHHHHHH
Confidence             000 111        11346788887777633    23555554

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=89.37  E-value=1.4  Score=38.82  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             CCCCc-CCHHHHHHHHHHHHhhCCCCccCCCC
Q psy12798          1 MSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGG   31 (170)
Q Consensus         1 MSyGA-LS~~A~~ALa~ga~~~Gt~~nTGEGg   31 (170)
                      |+.|+ ++.+...+|+++++.+|+++.+|..+
T Consensus        61 MtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~   92 (333)
T TIGR02151        61 MTGGSEEAGKINRNLARAARELGIPMGVGSQR   92 (333)
T ss_pred             CCCCchhHHHHHHHHHHHHHHcCCCeEEcCch
Confidence            77774 67778899999999999999999987

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1llw_A	1520	Structural Studies On The Synchronization Of Cataly		9e-31
1ea0_A	1479	Alpha Subunit Of A. Brasilense Glutamate Synthase L		9e-31
2vdc_A	1472	The 9.5 A Resolution Structure Of Glutamate Synthas		1e-30

>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic Centers In Glutamate Synthase: Complex With 2-Oxoglutarate Length = 1520

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 97/166 (58%), Gaps = 16/166 (9%)
Query: 1    MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
            MS G++S EAH TLA AMN++GAKSN+GEGGE+  RYL+  D +                
Sbjct: 875  MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEG------------N 922
Query: 61   SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
            S  L H   LQ     +   SAIKQ+ASGRFGVT  YL     L+IKMAQGAKPGEGG+L
Sbjct: 923  SPTLPHLHGLQ---NGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 979
Query: 121  PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
            PG KV++ IA  R S PG      P   D   +++L  LI  + +I
Sbjct: 980  PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQI 1025

>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase Length = 1479

Iteration: 1
 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 34/166 (20%)
Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    D+N                
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP--DKN---------------- 899
Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                           +N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG+L
Sbjct: 900 ---------------GDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 944
Query: 121 PGYKVTKDIASTRHSVPGAFQCY-PKFQDYTVVKELFSLILAVSRI 165
           PG+KVT+ IA  RHS PG      P   D   +++L  LI  + +I
Sbjct: 945 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQI 990

>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 1472

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 34/166 (20%)
Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    D+N                
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP--DKN---------------- 899
Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                           +N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG+L
Sbjct: 900 ---------------GDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 944
Query: 121 PGYKVTKDIASTRHSVPGAFQCY-PKFQDYTVVKELFSLILAVSRI 165
           PG+KVT+ IA  RHS PG      P   D   +++L  LI  + +I
Sbjct: 945 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQI 990

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	1e-69
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	1e-67

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520

 Score =  227 bits (581), Expect = 1e-69
 Identities = 69/138 (50%), Positives = 84/138 (60%), Gaps = 15/138 (10%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TLA AMN++GAKSN+GEGGE+  RYL+  D +       +        
Sbjct: 875 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPH------ 928

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
              L + D            SAIKQ+ASGRFGVT  YL     L+IKMAQGAKPGEGG+L
Sbjct: 929 LHGLQNGD---------TANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 979

Query: 121 PGYKVTKDIASTRHSVPG 138
           PG KV++ IA  R S PG
Sbjct: 980 PGKKVSEYIAMLRRSKPG 997

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479

 Score =  221 bits (566), Expect = 1e-67
 Identities = 69/140 (49%), Positives = 84/140 (60%), Gaps = 37/140 (26%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
           MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    +GD                
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGD---------------- 901

Query: 59  VTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGG 118
                              N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG
Sbjct: 902 -------------------NWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGG 942

Query: 119 ELPGYKVTKDIASTRHSVPG 138
           +LPG+KVT+ IA  RHS PG
Sbjct: 943 QLPGFKVTEMIARLRHSTPG 962

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.96
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.96
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	95.72

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.96  E-value=1.2e-29  Score=253.46  Aligned_cols=134  Identities=54%  Similarity=0.807  Sum_probs=115.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCcccccc-------------------CCCCcCCCcEEEeccccccccc
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLS-------------------SGDENQRSAIKQVASGRFGVTS   61 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~-------------------~~~~~~~~~I~Qigsg~fG~r~   61 (170)
                      |||||+|++++++||.||+.+|+.+||||||++|+++..                   .+.....+.|+|+++|+|||+ 
T Consensus       875 MS~GslS~ea~~aLA~Aas~aGg~~~tGeGg~~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~sg~FGVn-  953 (1520)
T 1ofd_A          875 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVT-  953 (1520)
T ss_dssp             BCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECTTCTTCC-
T ss_pred             cCcccccHHHHHHHHHHHHHcCCceEeCCCCCCHHHHHhhhccccccccccccccccccCcchHHHHHHHhcCCCCccC-
Confidence            999999999999999999999999999999999988631                   000012346666655555555 


Q ss_pred             ccccchhhhhhhhhhHHHHhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC
Q psy12798         62 SYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ  141 (170)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~  141 (170)
                                                       .+++.++++||||++||||||.||+||+.||+++||++|++++|+++
T Consensus       954 ---------------------------------~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~~~~Gv~l 1000 (1520)
T 1ofd_A          954 ---------------------------------PEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTL 1000 (1520)
T ss_dssp             ---------------------------------HHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCE
T ss_pred             ---------------------------------hhhccchHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcCCCCCCCe
Confidence                                             44566799999999999999999999999999999999999999999


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy12798        142 -CYPKFQDYTVVKELFSLILAVSRILSS  168 (170)
Q Consensus       142 -SP~~h~~~~s~~dl~~~I~~Lr~~~~~  168 (170)
                       ||++|++|++++|+.++|++||+.+..
T Consensus      1001 isP~~~~d~~s~edl~~~I~~Lk~~~~~ 1028 (1520)
T 1ofd_A         1001 ISPPPHHDIYSIEDLAQLIYDLHQINPE 1028 (1520)
T ss_dssp             ECCSSCTTCSSHHHHHHHHHHHHHHCTT
T ss_pred             eCCCCCcCcCCHHHHHHHHHHHHHhCCC
Confidence             999999999999999999999998743

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.96  E-value=1.7e-29  Score=251.92  Aligned_cols=134  Identities=54%  Similarity=0.855  Sum_probs=117.7

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCcccccc-CCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLS-SGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQ   79 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~-~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~   79 (170)
                      ||||++|++++++||.||+.+|+++||||||++|+++.. .+.....+.|+|+++++|||+.                  
T Consensus       858 MS~GalS~ea~~aLA~Aa~~aGg~~~tGeGg~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~------------------  919 (1479)
T 1ea0_A          858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQVASGRFGVTA------------------  919 (1479)
T ss_dssp             CCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTTSCBCCCSEEEECSSCTTCCH------------------
T ss_pred             ccccccCHHHHHHHHHHHHHcCCeeEcCCCccCHHHhhhccccchhhhhhhhhcCCCCCcCh------------------
Confidence            999999999999999999999999999999999987631 1111235578887666666654                  


Q ss_pred             HhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHH
Q psy12798         80 RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSL  158 (170)
Q Consensus        80 ~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~  158 (170)
                                      +++.++++||||++||||||.||+||+.||+++||++|++++|+++ ||++|++|++++|+.++
T Consensus       920 ----------------~~l~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lisP~~~~d~~s~edl~~~  983 (1479)
T 1ea0_A          920 ----------------EYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQL  983 (1479)
T ss_dssp             ----------------HHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHH
T ss_pred             ----------------HHccccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccCCCCCcCcCCHHHHHHH
Confidence                            4477899999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHhhCC
Q psy12798        159 ILAVSRILSS  168 (170)
Q Consensus       159 I~~Lr~~~~~  168 (170)
                      |++||+.+..
T Consensus       984 I~~Lk~~~~~  993 (1479)
T 1ea0_A          984 IYDLKQINPD  993 (1479)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHhCCC
Confidence            9999998744

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=95.72  E-value=0.006  Score=53.49  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             CCCCcC-CHHHHHHHHHHHHhhCCCCccCCCCCCccc
Q psy12798          1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGGENPER   36 (170)
Q Consensus         1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~   36 (170)
                      |++|++ +++..++||++|+..|+++++||+....++
T Consensus        94 Mtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~  130 (365)
T 3sr7_A           94 MTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKN  130 (365)
T ss_dssp             C----CCCHHHHHHHHHHHHHHTCCEEC---------
T ss_pred             ccCCCcchhHHHHHHHHHHHHcCCCeecccccccccC
Confidence            888955 999999999999999999999999987665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1ofda2	809	c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy	9e-29
d1ea0a2	771	c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy	1e-25

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

 Score =  108 bits (272), Expect = 9e-29
 Identities = 76/160 (47%), Positives = 93/160 (58%), Gaps = 16/160 (10%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TLA AMN++GAKSN+GEGGE+  RYL+  D +                
Sbjct: 445 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSE------------GN 492

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
           S  L H   L      +   SAIKQ+ASGRFGVT  YL     L+IKMAQGAKPGEGG+L
Sbjct: 493 SPTLPHLHGL---QNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 549

Query: 121 PGYKVTKDIASTRHSVPGAFQC-YPKFQDYTVVKELFSLI 159
           PG KV++ IA  R S PG      P   D   +++L  LI
Sbjct: 550 PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLI 589

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

 Score =  100 bits (250), Expect = 1e-25
 Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 34/160 (21%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    + +                
Sbjct: 436 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGD---------------- 479

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                            N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG+L
Sbjct: 480 -----------------NWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 522

Query: 121 PGYKVTKDIASTRHSVPGAFQC-YPKFQDYTVVKELFSLI 159
           PG+KVT+ IA  RHS PG      P   D   +++L  LI
Sbjct: 523 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLI 562

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	100.0
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	100.0
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	93.67
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	92.69
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	90.99

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=9.1e-52  Score=391.08  Aligned_cols=150  Identities=49%  Similarity=0.730  Sum_probs=140.9

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEeccccc----ccccccccchhhhhhhhhh
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRF----GVTSSYLAHADDLQIKMAD   76 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~f----G~r~~~~~~~~~~~~~~~~   76 (170)
                      |||||||++|++|||+||+++|+++||||||++|+|+..     .+|++||++++||    ||++.              
T Consensus       445 MS~GslS~~a~~ala~aa~~~G~~~ntGEGG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g--------------  505 (809)
T d1ofda2         445 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLT-----LDDVDSEGNSPTLPHLHGLQNG--------------  505 (809)
T ss_dssp             BCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGGGSC-----CCCCCTTSCCTTSTTCCSCCTT--------------
T ss_pred             cccccccHHHHHHHHHHHHHhCceecCCCCCCCceeeec-----cCccccccCcccccccccccCC--------------
Confidence            999999999999999999999999999999999999754     5899999999875    88764              


Q ss_pred             HHHHhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHH
Q psy12798         77 ENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKEL  155 (170)
Q Consensus        77 ~~~~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl  155 (170)
                      ....+.++|+++|||||++++|.+++|||||||||||||+||+||+.|||++||++|+++||+++ |||+|||||||+||
T Consensus       506 ~~~~s~i~q~asgrfGv~~~~l~~~~~ieIK~~QGAKPG~GG~Lpg~KVt~~IA~~R~~~~G~~liSP~~h~diysiedL  585 (809)
T d1ofda2         506 DTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDL  585 (809)
T ss_dssp             CCCCCSEEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHH
T ss_pred             CCCcchhHhhhhcccCCChhhhcccceEEEEEecccccccccccchhhcCHHHHhhcCCCCCCCCCCCCCCCCCCCHHHH
Confidence            23456899999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q psy12798        156 FSLILAVSRILSSK  169 (170)
Q Consensus       156 ~~~I~~Lr~~~~~~  169 (170)
                      .+||++||++++++
T Consensus       586 ~q~I~~Lr~~~~~~  599 (809)
T d1ofda2         586 AQLIYDLHQINPEA  599 (809)
T ss_dssp             HHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999998764

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=100.00  E-value=8.7e-48  Score=362.58  Aligned_cols=135  Identities=54%  Similarity=0.850  Sum_probs=121.6

Q ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCC-CcCCCcEEEecccccccccccccchhhhhhhhhhHHH
Q psy12798          1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD-ENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQ   79 (170)
Q Consensus         1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~-~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~   79 (170)
                      |||||||++|++|||+||+++|+++||||||++|+|+..... ...+..                               
T Consensus       436 MSfGALS~~A~~aLa~ga~~~g~~~ntGEGG~~~~~~~~~~~~~~~~~~-------------------------------  484 (771)
T d1ea0a2         436 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSA-------------------------------  484 (771)
T ss_dssp             CCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTTSCBCCCS-------------------------------
T ss_pred             ccccccCHHHHHHHHHHHHhcCCeeecCCCCCChhhccccCCCcccccc-------------------------------
Confidence            999999999999999999999999999999999999754210 011224                               


Q ss_pred             HhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHH
Q psy12798         80 RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSL  158 (170)
Q Consensus        80 ~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~  158 (170)
                         ++||++|||||++++|.+++|||||||||||||+||+||+.|||+|||++||++||+|+ |||+||||+||+||.+|
T Consensus       485 ---i~q~asgrfG~~~~~l~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~  561 (771)
T d1ea0a2         485 ---IKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQL  561 (771)
T ss_dssp             ---EEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHH
T ss_pred             ---cceecCCcCCcCHHHhcccceeEEeeecccccccccccccccCCHHHHHhcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence               45577788888888899999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHhhCCC
Q psy12798        159 ILAVSRILSSK  169 (170)
Q Consensus       159 I~~Lr~~~~~~  169 (170)
                      |++||+++++|
T Consensus       562 I~~Lr~~~~~~  572 (771)
T d1ea0a2         562 IYDLKQINPDA  572 (771)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHhcCCCC
Confidence            99999999775

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.67  E-value=0.018  Score=46.11  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCCCc--CCHHHHHHHHHHHHhhCCCCccCCCCCCcccc
Q psy12798          1 MSFGS--ISIEAHTTLAKAMNKIGAKSNTGEGGENPERY   37 (170)
Q Consensus         1 MSyGA--LS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~   37 (170)
                      ||+|+  +++++..+||++|+..|+.+|+|+++..+.+.
T Consensus        43 Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~   81 (329)
T d1p0ka_          43 MTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDP   81 (329)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCH
T ss_pred             HHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhH
Confidence            89996  89999999999999999999999999887663

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=92.69  E-value=0.00038  Score=55.23  Aligned_cols=36  Identities=28%  Similarity=0.266  Sum_probs=28.0

Q ss_pred             CCCCcC-CHHHHHHHHHHHHhhCCCCccCCCCCCccc
Q psy12798          1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGGENPER   36 (170)
Q Consensus         1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~   36 (170)
                      |++|+. ++.+.++||++|+..|+.+++|++...+++
T Consensus        44 m~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~   80 (310)
T d1vcfa1          44 MTGGEENGERINLALAEAAEALGVGMMLGSGRILLER   80 (310)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred             hhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence            888954 456679999999999999999998877665

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=90.99  E-value=0.022  Score=52.72  Aligned_cols=85  Identities=36%  Similarity=0.447  Sum_probs=55.0

Q ss_pred             CCCcEEEecccccccccccccchhhhhhhhhhHHHHhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCC-
Q psy12798         45 QRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGY-  123 (170)
Q Consensus        45 ~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~-  123 (170)
                      ..+.|+|+++|+|||+.+|+..++..+||++|.++.-.--|+...+  |++         ||---.+..||..=+-|+. 
T Consensus       508 ~~s~i~q~asgrfGv~~~~l~~~~~ieIK~~QGAKPG~GG~Lpg~K--Vt~---------~IA~~R~~~~G~~liSP~~h  576 (809)
T d1ofda2         508 ANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKK--VSE---------YIAMLRRSKPGVTLISPPPH  576 (809)
T ss_dssp             CCCSEEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGG--CCH---------HHHHHHTSCTTCCEECCSSC
T ss_pred             CcchhHhhhhcccCCChhhhcccceEEEEEecccccccccccchhh--cCH---------HHHhhcCCCCCCCCCCCCCC
Confidence            5778999999999999999999999999999988763322221110  111         1222246667666555552 


Q ss_pred             -------CchHHHHHHhCCCCCCC
Q psy12798        124 -------KVTKDIASTRHSVPGAF  140 (170)
Q Consensus       124 -------Kvt~eIA~~Rg~~~g~~  140 (170)
                             .+-.-|.++|.+.++..
T Consensus       577 ~diysiedL~q~I~~Lr~~~~~~p  600 (809)
T d1ofda2         577 HDIYSIEDLAQLIYDLHQINPEAQ  600 (809)
T ss_dssp             TTCSSHHHHHHHHHHHHHHCTTSE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCc
Confidence                   23445666666666543