Psyllid ID: psy12811

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Secondary Structure (PSIPRED)
cccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEEEEEEEccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccccHHHccccccccccEEEEEcccHHHHHHHHcccccEEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mnlfgaqsivsfeilpqpnpkrsqdnpwpqfprilkvdygheevkvkhnhdprefcifelrfpfeecspyetwc
Flexible Loop (DISEMBL)
MNLFGAQSIVsfeilpqpnpkrsqdnpwpQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Low Complexity Region (SEG)
MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Disordered region (IsUnstruct)
****************************PQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYE***
Disordered Region (DISOPRED)
*NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPY****
Disordered Region (DISEMBL)
MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Disordered Region (DISPRO)
****GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPYETWC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q12680	2145	Glutamate synthase [NADH]	yes	N/A	0.783	0.027	0.551	2e-17
Q03460	2194	Glutamate synthase [NADH]	N/A	N/A	0.837	0.028	0.483	1e-14
Q0DG35	2188	Glutamate synthase 2 [NAD	yes	N/A	0.837	0.028	0.483	5e-14
Q0JKD0	2167	Glutamate synthase 1 [NAD	yes	N/A	0.837	0.028	0.5	5e-14
Q9LV03	2208	Glutamate synthase 1 [NAD	yes	N/A	0.783	0.026	0.465	4e-13
Q9C102	2111	Putative glutamate syntha	yes	N/A	0.837	0.029	0.467	6e-13
O34399	493	Glutamate synthase [NADPH	yes	N/A	0.702	0.105	0.384	3e-06
P96219	488	Glutamate synthase [NADPH	yes	N/A	0.527	0.079	0.410	0.0003

>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA S+++FE+LP+P  +R++DNPWPQ+PR+++VDYGH EVK  +  DPRE+CI    F
Sbjct: 1944 GAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEF 2001

Forms L-glutamate from L-glutamine and 2-oxoglutarate. Represents an alternative pathway to L-glutamate dehydrogenase for the biosynthesis of L-glutamate. Participates with glutamine synthetase in ammonia assimilation processes. The enzyme is specific for NADH, L-glutamine and 2-oxoglutarate.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4

>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  ++V+ E+LPQP P R+  NPWPQ+PRI +VDYGH+E + K   DPR + +   RF  
Sbjct: 1990 GCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETKFGKDPRTYEVLTKRFVG 2049

Query: 65   EE 66
            +E
Sbjct: 2050 DE 2051

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0555600 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  ++V+ E+LP+P  KR+ DNPWPQ+PRI +VDYGH+E   K   DPR + +   RF  
Sbjct: 1990 GCTNLVNLELLPEPPRKRAPDNPWPQWPRIFRVDYGHQEATSKFGKDPRSYKVLTKRFIG 2049

Query: 65   EE 66
            +E
Sbjct: 2050 DE 2051

Involved in glutamate biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  SIV+ E+L +P  KR+ DNPWPQ+PRI +VDYGH+E   K  +DPR + +   RF  
Sbjct: 1972 GCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEASSKFGNDPRTYEVLTKRFIG 2031

Query: 65   EE 66
            +E
Sbjct: 2032 DE 2033

Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            G  +IV+ E+LPQP   R+  NPWPQ+PR+ ++DYGH+E   K   DPR + +   RF
Sbjct: 2011 GCTNIVNLELLPQPPSTRAPGNPWPQWPRVFRIDYGHQEATTKFGKDPRTYEVLTKRF 2068

Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            GA+S+ + E+LP P  +R+ DNPWPQ+PR+ +VDYGH EV+  +  D RE+ I    F  
Sbjct: 1920 GAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEK 1979

Query: 65   EE 66
            +E
Sbjct: 1980 DE 1981

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain 168) GN=gltB PE=2 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 6   AQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCI 57
           A+S+  F   P+  P R+ DN WP+ P +  ++Y +EE + K   DPRE+ I
Sbjct: 316 AKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEEAEAKFGRDPREYSI 367

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P96219|GLTD_MYCTU Glutamate synthase [NADPH] small chain OS=Mycobacterium tuberculosis GN=gltD PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEE 43
           GA ++  FEI+P+P   R++  PWP +P + +V   HEE
Sbjct: 310 GAIAVHQFEIMPRPPDARAESTPWPTYPLMYRVSAAHEE 348


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.142    0.487 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,749,972
Number of Sequences: 539616
Number of extensions: 1087874
Number of successful extensions: 1639
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
407917935	2136	Glutamine amidotransferase class-2 [Macr	0.783	0.027	0.603	5e-18
328721168	2080	PREDICTED: putative glutamate synthase [	0.770	0.027	0.649	7e-18
259484579	2126	TPA: Glutamate synthase Fragment [Source	0.783	0.027	0.620	1e-17
121702321	2125	glutamate synthase Glt1, putative [Asper	0.783	0.027	0.603	1e-17
119496315	2126	glutamate synthase Glt1, putative [Neosa	0.783	0.027	0.603	1e-17
366989177	2149	hypothetical protein NCAS_0A14190 [Naumo	0.783	0.026	0.586	1e-17
67537928	2144	hypothetical protein AN5134.2 [Aspergill	0.783	0.027	0.620	1e-17
70991272	2126	glutamate synthase Glt1 [Aspergillus fum	0.783	0.027	0.603	2e-17
242807056	2125	glutamate synthase Glt1, putative [Talar	0.783	0.027	0.620	2e-17
357624914	2044	glutamate synthase [Danaus plexippus]	0.783	0.028	0.620	2e-17

>gi|407917935|gb|EKG11235.1| Glutamine amidotransferase class-2 [Macrophomina phaseolina MS6]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+ +FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK  H  DPRE+C+    F
Sbjct: 1929 GAKSVTNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHHGKDPREYCVMSKEF 1986

Source: Macrophomina phaseolina MS6

Species: Macrophomina phaseolina

Genus: Macrophomina

Family: Botryosphaeriaceae

Order: Botryosphaeriales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|328721168|ref|XP_001948786.2| PREDICTED: putative glutamate synthase [NADPH]-like [Acyrthosiphon pisum]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 6    AQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            A+SI SFEILP+P   R +DNPWPQ+PR+ KVDYGHEEVK+K+  DPR+FCI    F
Sbjct: 1889 ARSITSFEILPEPPATRGRDNPWPQYPRVFKVDYGHEEVKIKYGRDPRQFCIMSKEF 1945

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|259484579|tpe|CBF80924.1| TPA: Glutamate synthase Fragment [Source:UniProtKB/TrEMBL;Acc:Q9Y8F4] [Aspergillus nidulans FGSC A4]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+CI    F
Sbjct: 1922 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCIMSKEF 1979

Source: Aspergillus nidulans FGSC A4

Species: Emericella nidulans

Genus: Emericella

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

>gi|121702321|ref|XP_001269425.1| glutamate synthase Glt1, putative [Aspergillus clavatus NRRL 1] gi|119397568|gb|EAW07999.1| glutamate synthase Glt1, putative [Aspergillus clavatus NRRL 1]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+C+    F
Sbjct: 1922 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCVMSTEF 1979

Source: Aspergillus clavatus NRRL 1

Species: Aspergillus clavatus

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|119496315|ref|XP_001264931.1| glutamate synthase Glt1, putative [Neosartorya fischeri NRRL 181] gi|119413093|gb|EAW23034.1| glutamate synthase Glt1, putative [Neosartorya fischeri NRRL 181]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+C+    F
Sbjct: 1922 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCVMSTEF 1979

Source: Neosartorya fischeri NRRL 181

Species: Neosartorya fischeri

Genus: Neosartorya

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|366989177|ref|XP_003674356.1| hypothetical protein NCAS_0A14190 [Naumovozyma castellii CBS 4309] gi|342300219|emb|CCC67977.1| hypothetical protein NCAS_0A14190 [Naumovozyma castellii CBS 4309]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 49/58 (84%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+++FE+LPQP  +R++DNPWPQ+PR+++VDYGH EVK  + +DPREFCI+   F
Sbjct: 1950 GAKSVINFELLPQPPNERARDNPWPQWPRVMRVDYGHSEVKEHYGNDPREFCIYAKEF 2007

Source: Naumovozyma castellii CBS 4309

Species: Naumovozyma castellii

Genus: Naumovozyma

Family: Saccharomycetaceae

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|67537928|ref|XP_662738.1| hypothetical protein AN5134.2 [Aspergillus nidulans FGSC A4] gi|40743125|gb|EAA62315.1| hypothetical protein AN5134.2 [Aspergillus nidulans FGSC A4]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+CI    F
Sbjct: 1940 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCIMSKEF 1997

Source: Aspergillus nidulans FGSC A4

Species: Emericella nidulans

Genus: Emericella

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|70991272|ref|XP_750485.1| glutamate synthase Glt1 [Aspergillus fumigatus Af293] gi|66848117|gb|EAL88447.1| glutamate synthase Glt1, putative [Aspergillus fumigatus Af293] gi|159130958|gb|EDP56071.1| glutamate synthase Glt1, putative [Aspergillus fumigatus A1163]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+C+    F
Sbjct: 1922 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCVMSTEF 1979

Source: Aspergillus fumigatus Af293

Species: Aspergillus fumigatus

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|242807056|ref|XP_002484873.1| glutamate synthase Glt1, putative [Talaromyces stipitatus ATCC 10500] gi|218715498|gb|EED14920.1| glutamate synthase Glt1, putative [Talaromyces stipitatus ATCC 10500]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+CI    F
Sbjct: 1923 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHTEVKTHMGKDPREYCIMSKEF 1980

Source: Talaromyces stipitatus ATCC 10500

Species: Talaromyces stipitatus

Genus: Talaromyces

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|357624914|gb|EHJ75509.1| glutamate synthase [Danaus plexippus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA+SI +FEILP+P P R+++NPWPQ+PR+ +VDYGHEEVKVK  HDPR+F      F
Sbjct: 1889 GAKSITTFEILPEPKPTRTKENPWPQWPRVFRVDYGHEEVKVKFGHDPRKFSTLTKEF 1946

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
ASPGD|ASPL0000027159	2126	gltA [Emericella nidulans (tax	0.783	0.027	0.620	5.2e-16
FB|FBgn0036663	2114	CG9674 [Drosophila melanogaste	0.702	0.024	0.653	2.3e-15
SGD|S000002330	2145	GLT1 "NAD(+)-dependent glutama	0.783	0.027	0.551	1.3e-14
CGD|CAL0000516	2126	GLT1 [Candida albicans (taxid:	0.837	0.029	0.516	1.3e-12
WB|WBGene00012326	2175	W07E11.1 [Caenorhabditis elega	0.824	0.028	0.491	7.5e-12
UNIPROTKB|Q0JKD0	2167	LOC_Os01g48960 "Glutamate synt	0.837	0.028	0.5	2e-11
TAIR|locus:2178461	2208	GLT1 "NADH-dependent glutamate	0.783	0.026	0.465	1.4e-10
POMBASE|SPAPB1E7.07	2111	glt1 "glutamate synthase Glt1	0.837	0.029	0.467	1.7e-10
UNIPROTKB|Q5HXE8	481	gltD "Glutamate synthase, smal	0.689	0.106	0.490	1.7e-06
TIGR_CMR|CJE_0008	481	CJE_0008 "glutamate synthase,	0.689	0.106	0.490	1.7e-06

ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)]

 Score = 216 (81.1 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
             GA+S+V+FE+LPQP P+R++DNPWPQ+PRI +VDYGH EVK     DPRE+CI    F
Sbjct:  1922 GAKSVVNFELLPQPPPERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREYCIMSKEF 1979

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISA;RCA;IMP

GO:0009064 "glutamine family amino acid metabolic process" evidence=IGI;RCA;IMP

GO:0005829 "cytosol" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 34/52 (65%), Positives = 45/52 (86%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFC 56
             GA+SI +FEILP+P  KR+QDNPWPQ+P++ +VDYGHEEVK+K   DPR++C
Sbjct:  1926 GAKSITTFEILPEPPQKRAQDNPWPQWPKVFRVDYGHEEVKLKWGKDPRQYC 1977

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

SGD|S000002330 GLT1 "NAD(+)-dependent glutamate synthase (GOGAT)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 203 (76.5 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
             GA S+++FE+LP+P  +R++DNPWPQ+PR+++VDYGH EVK  +  DPRE+CI    F
Sbjct:  1944 GAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEF 2001

GO:0005739 "mitochondrion" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IEP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IMP;IDA

GO:0019676 "ammonia assimilation cycle" evidence=IEP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0097054 "L-glutamate biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

CGD|CAL0000516 GLT1 [Candida albicans (taxid:5476)]

 Score = 184 (69.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
             GA+S+ +FE+LP P   R +DNPWPQ+PRI +VDYGH EV   +  DPRE+ I    F  
Sbjct:  1928 GAKSVTNFELLPNPPNARPKDNPWPQWPRIFRVDYGHTEVATHYGKDPREYSILSKEFVG 1987

Query:    65 EE 66
             +E
Sbjct:  1988 DE 1989

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 177 (67.4 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query:     2 NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELR 61
             N  G +++ +FEILPQP P R  +NPWP++P I +VDYGHEE K     DPR + +   R
Sbjct:  1973 NRLGCKTVGAFEILPQPGPNRKPENPWPEWPLIFRVDYGHEEAKEMTGSDPRTYSVSTKR 2032

Query:    62 F 62
             F
Sbjct:  2033 F 2033

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 173 (66.0 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
             G  SIV+ E+L +P  KR+ DNPWPQ+PRI +VDYGH+E   K  +DPR + +   RF  
Sbjct:  1972 GCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEASSKFGNDPRTYEVLTKRFIG 2031

Query:    65 EE 66
             +E
Sbjct:  2032 DE 2033

GO:0006537 "glutamate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IEP

TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
             G  +IV+ E+LPQP   R+  NPWPQ+PR+ ++DYGH+E   K   DPR + +   RF
Sbjct:  2011 GCTNIVNLELLPQPPSTRAPGNPWPQWPRVFRIDYGHQEATTKFGKDPRTYEVLTKRF 2068

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IDA;IMP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IDA;IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009536 "plastid" evidence=TAS

POMBASE|SPAPB1E7.07 glt1 "glutamate synthase Glt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 164 (62.8 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
             GA+S+ + E+LP P  +R+ DNPWPQ+PR+ +VDYGH EV+  +  D RE+ I    F  
Sbjct:  1920 GAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEK 1979

Query:    65 EE 66
             +E
Sbjct:  1980 DE 1981

GO:0004355 "glutamate synthase (NADPH) activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q5HXE8 gltD "Glutamate synthase, small subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREF 55
             GA+SIV FE  P+   +RSQ+NPWP    I   DYG EE    +  DPRE+
Sbjct:   312 GAKSIVRFERSPKRPLQRSQNNPWPLKADIFTTDYGLEEAIAVYGKDPREY 362

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0006537 "glutamate biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0008 CJE_0008 "glutamate synthase, small subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query:     5 GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREF 55
             GA+SIV FE  P+   +RSQ+NPWP    I   DYG EE    +  DPRE+
Sbjct:   312 GAKSIVRFERSPKRPLQRSQNNPWPLKADIFTTDYGLEEAIAVYGKDPREY 362

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0006537 "glutamate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12680	GLT1_YEAST	1, ., 4, ., 1, ., 1, 4	0.5517	0.7837	0.0270	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	1e-20
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-12
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	7e-04

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 83.0 bits (205), Expect = 1e-20
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCI 57
           GA S+  FEI+P+P   R++DNPWP++PR+ +VDY HEE    +  DPRE+ I
Sbjct: 306 GAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSI 358

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 60.2 bits (147), Expect = 1e-12
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEE-VKVKHNHDPREF 55
           GA+S+   +I+P P  +R+++NPWP +P  L+V   HEE V+ + N   +EF
Sbjct: 304 GAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355

Length = 471

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 1   MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFEL 60
               GA+S+  F        +  + N WP +   L+V    EE         R   +   
Sbjct: 281 ALRLGAKSVTCFY----REDRDDETNEWPTWAAQLEVRSAGEEG------VERLPFVQPK 330

Query: 61  RFPFEE 66
            F   E
Sbjct: 331 AFIGNE 336

Length = 457

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG0399|consensus	2142		99.92
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.03
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.3
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.63
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.48
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.99
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	90.16
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	83.55

>KOG0399|consensus

Probab=99.92  E-value=3.7e-26  Score=193.48  Aligned_cols=70  Identities=43%  Similarity=0.865  Sum_probs=67.5

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCCCc
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPY   70 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~~~   70 (74)
                      ++||||+||..||++|+||.+|..+||||+||+||||||+|+|+.+.||+|||+|+|.||+|+||++|-.
T Consensus      1943 svrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v 2012 (2142)
T KOG0399|consen 1943 SVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNV 2012 (2142)
T ss_pred             chhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCce
Confidence            4799999999999999999999999999999999999999999999999999999999999999998753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.03  E-value=1.2e-10  Score=91.01  Aligned_cols=59  Identities=24%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSP   69 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~~   69 (74)
                      |+||||++|+|+.    ++..++..+|||+||..++++++|+||..      |.|.+++++|+++++|.
T Consensus       281 ~~r~Ga~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~a~eeg~~------~~~~~~~~~~~~~e~Gr  339 (457)
T COG0493         281 ALRLGAKSVTCFY----REDRDDETNEWPTWAAQLEVRSAGEEGVE------RLPFVQPKAFIGNEGGR  339 (457)
T ss_pred             HhhcCCeEEEEec----cccccccCCcccccchhhhhhhhhhcCCc------ccccCCceeEeecCCCc
Confidence            5899999999998    55555688999999999999999999955      99999999999998884

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.18  E-value=1.6e-06  Score=67.24  Aligned_cols=68  Identities=41%  Similarity=0.820  Sum_probs=59.8

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS   68 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~   68 (74)
                      |+|+||+.|+.++.+|..+..|..++.||.||..+.+..+++|+.+.+|-+++.|...+++|+|+++|
T Consensus       302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g  369 (485)
T TIGR01317       302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEG  369 (485)
T ss_pred             HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCC
Confidence            46899999999999999888887788899999999999999999887888888888888998876544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.30  E-value=0.0071  Score=51.22  Aligned_cols=50  Identities=12%  Similarity=-0.029  Sum_probs=36.8

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEEC   67 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~   67 (74)
                      |+|+|| +|+.+...        ..++||.++..+.  .+++||.+      +.|...+++|+++++
T Consensus       466 a~R~Ga-~Vtlv~rr--------~~~~mpa~~~e~~--~a~eeGV~------~~~~~~p~~i~~d~~  515 (944)
T PRK12779        466 AKRLGG-NVTIVYRR--------TKSEMPARVEELH--HALEEGIN------LAVLRAPREFIGDDH  515 (944)
T ss_pred             HHHcCC-EEEEEEec--------CcccccccHHHHH--HHHHCCCE------EEeCcceEEEEecCC
Confidence            479998 58877543        3368998886544  48899877      788888889887643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.63  E-value=0.017  Score=46.41  Aligned_cols=52  Identities=13%  Similarity=0.008  Sum_probs=35.8

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS   68 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~   68 (74)
                      |+|+||++|+.+.+.        ...+||.++..+  ..+++||.+      +.|...+++|.++++|
T Consensus       470 ~~~~Ga~~Vt~v~rr--------~~~~~~~~~~e~--~~a~~eGv~------~~~~~~~~~i~~~~~g  521 (639)
T PRK12809        470 SIRLNAASVTCAYRR--------DEVSMPGSRKEV--VNAREEGVE------FQFNVQPQYIACDEDG  521 (639)
T ss_pred             HHHcCCCeEEEeeec--------CcccCCCCHHHH--HHHHHcCCe------EEeccCCEEEEECCCC
Confidence            468999999987543        334577766433  357888876      6777777777765544

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.48  E-value=0.024  Score=43.68  Aligned_cols=46  Identities=37%  Similarity=0.675  Sum_probs=37.7

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhh
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKV   46 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~   46 (74)
                      ++|+||++|+.++..+.+...+.....||.++..+.+..+.++|.+
T Consensus       300 ~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~  345 (471)
T PRK12810        300 AIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVE  345 (471)
T ss_pred             HHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCe
Confidence            3689999999998888887766667789999988778888888765

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.99  E-value=0.028  Score=45.12  Aligned_cols=52  Identities=17%  Similarity=0.120  Sum_probs=35.3

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS   68 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~   68 (74)
                      |+|+||++|+-+.+..        ..+||.++..  +..+++||.+      +.|...+++|+++++|
T Consensus       487 a~r~ga~~Vt~i~~~~--------~~~~~~~~~e--~~~~~~~Gv~------~~~~~~~~~i~~~~~g  538 (654)
T PRK12769        487 ALRHGASNVTCAYRRD--------EANMPGSKKE--VKNAREEGAN------FEFNVQPVALELNEQG  538 (654)
T ss_pred             HHHcCCCeEEEeEecC--------CCCCCCCHHH--HHHHHHcCCe------EEeccCcEEEEECCCC
Confidence            4789999999775442        3346766654  4568888876      6777777777655433

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=90.16  E-value=0.14  Score=43.70  Aligned_cols=52  Identities=12%  Similarity=0.001  Sum_probs=34.5

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS   68 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~   68 (74)
                      |+|+||++|+.+.++        ....||.++.  .+..+++||.+      ..|...+++++++++|
T Consensus       590 a~rlGa~~Vtiv~rr--------~~~em~a~~~--e~~~a~eeGI~------~~~~~~p~~i~~~~~G  641 (1006)
T PRK12775        590 AKRLGAPTVRCVYRR--------SEAEAPARIE--EIRHAKEEGID------FFFLHSPVEIYVDAEG  641 (1006)
T ss_pred             HHHcCCCEEEEEeec--------CcccCCCCHH--HHHHHHhCCCE------EEecCCcEEEEeCCCC
Confidence            468999999987533        2334555543  34578888877      5677777777665444

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=83.55  E-value=0.65  Score=38.03  Aligned_cols=50  Identities=14%  Similarity=0.021  Sum_probs=30.2

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEE   66 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde   66 (74)
                      +.|+||++|+-|+.++.        ..||.++..  +..+.+||.+      ..+...++++++++
T Consensus       589 ~~r~Ga~~Vtlv~r~~~--------~~~~~~~~e--~~~~~~~GV~------i~~~~~~~~i~~~~  638 (752)
T PRK12778        589 AKRLGAERVTIVYRRSE--------EEMPARLEE--VKHAKEEGIE------FLTLHNPIEYLADE  638 (752)
T ss_pred             HHHcCCCeEEEeeecCc--------ccCCCCHHH--HHHHHHcCCE------EEecCcceEEEECC
Confidence            36899999999876543        345554432  3457788766      34455555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	2e-04

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 11/52 (21%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEE-VKVKHNHDPREF 55
           GA S+       + N         P      +V +  EE V+      P  F
Sbjct: 287 GATSVKCLYRRDRKN--------MP--GSQREVAHAEEEGVEFIWQAAPEGF 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.21

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.21  E-value=0.013  Score=43.78  Aligned_cols=35  Identities=23%  Similarity=0.091  Sum_probs=25.6

Q ss_pred             CccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhh
Q psy12811          2 NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKV   46 (74)
Q Consensus         2 ~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~   46 (74)
                      +|+||++|++|.+.+        ..+||.++.  .++++++||.+
T Consensus       284 ~r~Ga~~Vtiv~r~~--------~~~~p~~~~--e~~~~~~~Gv~  318 (456)
T 2vdc_G          284 IRQGATSVKCLYRRD--------RKNMPGSQR--EVAHAEEEGVE  318 (456)
T ss_dssp             HHTTCSEEEEECSSC--------STTCSSCHH--HHHHHHHTTCE
T ss_pred             HHcCCCEEEEEEeCC--------ccCCCCCHH--HHHHHHHCCCE
Confidence            589999999995543        335777664  36788898876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.12
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.42

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.12  E-value=0.00052  Score=43.57  Aligned_cols=49  Identities=12%  Similarity=-0.102  Sum_probs=31.8

Q ss_pred             CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecC
Q psy12811          1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFE   65 (74)
Q Consensus         1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gd   65 (74)
                      |+|+||++|+++.+++.+...          .....+..+.+++..      ..+...+++++++
T Consensus        64 a~r~GA~~V~vi~rr~~~~~~----------a~~~~~~~a~~~~~~------~~~~~~~~ei~~~  112 (153)
T d1gtea3          64 ALRCGARRVFLVFRKGFVNIR----------AVPEEVELAKEEKCE------FLPFLSPRKVIVK  112 (153)
T ss_dssp             HHHTTCSEEEEECSSCGGGCC----------SCHHHHHHHHHTTCE------EECSEEEEEEEEE
T ss_pred             HHHcCCcceeEEEeCChhhhc----------cchhheeecccccce------eEeccccEEEEec
Confidence            479999999999876654321          223445566666655      5666677776654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.42  E-value=0.0054  Score=40.31  Aligned_cols=65  Identities=8%  Similarity=-0.121  Sum_probs=39.0

Q ss_pred             cCCceeEEecccCC------CCCCCCCCCCCCCCcccccccchhHhhhhhc----------------------------C
Q psy12811          4 FGAQSIVSFEILPQ------PNPKRSQDNPWPQFPRILKVDYGHEEVKVKH----------------------------N   49 (74)
Q Consensus         4 qGA~SV~Q~e~~p~------pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~----------------------------g   49 (74)
                      .||++|++|.++..      +++-|.-.+.|+.++.+...++.+.+.....                            +
T Consensus        81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (225)
T d1cjca1          81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA  160 (225)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccc
Confidence            69999999988763      2232433455666555555444433221111                            1


Q ss_pred             CC----ccEEeEeeeEeecCCCC
Q psy12811         50 HD----PREFCIFELRFPFEECS   68 (74)
Q Consensus        50 ~d----pR~y~v~t~~F~gde~~   68 (74)
                      ..    .+.|.+++++|++++++
T Consensus       161 ~~~~~i~~~f~~~p~~i~~~~~g  183 (225)
T d1cjca1         161 SASRAWGLRFFRSPQQVLPSPDG  183 (225)
T ss_dssp             TCSEEEEEECSEEEEEEEECTTS
T ss_pred             ccccceEEEeecccccccccCCC
Confidence            11    24799999999998776