Psyllid ID: psy1281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQQQQQQSASFPLA
Secondary Structure (PSIPRED)
cHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MDIFLNFAVDLDTEGRYLFLNAIAnqlrypnshthYFSCLLLYLFAEANTEAIQEQITRVLLERLivnrphpwgLLITFIELiknpvykfwdhefvhcAPEIEKLFESGWPLYAQLLIDIFKFlapflpqqqqqqqqsasfpla
Flexible Loop (DISEMBL)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQQqqqqsasfpla
Low Complexity Region (SEG)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKflapflpqqqqqqqqsasfpla
Disordered region (IsUnstruct)
**IFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPF*****************
Disordered Region (DISOPRED)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLID*************************
Disordered Region (DISEMBL)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFL****************
Disordered Region (DISPRO)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQQQQQQSASFPLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
A0JP85	2388	CCR4-NOT transcription co	yes	N/A	0.75	0.045	0.925	1e-56
Q6ZQ08	2375	CCR4-NOT transcription co	yes	N/A	0.75	0.045	0.925	2e-56
A5YKK6	2376	CCR4-NOT transcription co	yes	N/A	0.75	0.045	0.925	2e-56
A1A5H6	2374	CCR4-NOT transcription co	yes	N/A	0.75	0.045	0.907	2e-55
P87112	2100	General negative regulato	yes	N/A	0.673	0.046	0.574	4e-28
P25655	2108	General negative regulato	yes	N/A	0.625	0.042	0.425	3e-13

>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2260 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2319

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2320 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2367

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Xenopus tropicalis (taxid: 8364)

>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.

Mus musculus (taxid: 10090)

>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.

Homo sapiens (taxid: 9606)

>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 102/108 (94%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEAN EAIQEQITRV
Sbjct: 2246 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRV 2305

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP +KFW H+FVHCAPEIEKLF+S
Sbjct: 2306 LLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQS 2353

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.

Danio rerio (taxid: 7955)

>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 12   DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEA----IQEQITRVLLERLIV 67
            D++ RY  L AIANQLRYP+SHT+Y SC  LYLF  ++       I+EQ+T VLLER+I 
Sbjct: 1974 DSKCRYFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIIC 2033

Query: 68   NRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            NRPHPWGLLITF EL+KN  Y FW H ++    EI +LF+S
Sbjct: 2034 NRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDS 2074

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 14   EGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFA--EANTEA--IQEQITRVLLERLIVNR 69
            E +Y  + +I  QLRYPN HT++FS +L+ +F   E N +   +QE I R  L+R+IVN+
Sbjct: 1979 EMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNK 2038

Query: 70   PHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIE 103
            PH WG+ + F +LI N      D  FV   PEI+
Sbjct: 2039 PHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIK 2072

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
270004176	2374	hypothetical protein TcasGA2_TC003500 [T	0.75	0.045	0.953	1e-55
307179394	2402	CCR4-NOT transcription complex subunit 1	0.687	0.041	0.953	1e-55
307197189	2401	CCR4-NOT transcription complex subunit 1	0.687	0.041	0.953	1e-55
91079018	2347	PREDICTED: similar to CCR4-NOT transcrip	0.75	0.046	0.953	1e-55
383858425	2371	PREDICTED: CCR4-NOT transcription comple	0.687	0.041	0.953	2e-55
383858423	2397	PREDICTED: CCR4-NOT transcription comple	0.687	0.041	0.953	2e-55
332030325	2403	CCR4-NOT transcription complex subunit 1	0.75	0.044	0.944	2e-55
158299778	2198	AGAP009057-PA [Anopheles gambiae str. PE	0.75	0.049	0.925	3e-55
328785784	2397	PREDICTED: CCR4-NOT transcription comple	0.687	0.041	0.935	6e-55
328785786	2370	PREDICTED: CCR4-NOT transcription comple	0.687	0.041	0.935	6e-55

>gi|270004176|gb|EFA00624.1| hypothetical protein TcasGA2_TC003500 [Tribolium castaneum]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2246 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2305

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2306 LLERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFES 2353

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179394|gb|EFN67724.1| CCR4-NOT transcription complex subunit 1 [Camponotus floridanus]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2275 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2334

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2335 LLERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFES 2382

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197189|gb|EFN78511.1| CCR4-NOT transcription complex subunit 1 [Harpegnathos saltator]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2273 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2332

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2333 LLERLIVNRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFES 2380

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079018|ref|XP_974867.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 1 (Negative regulator of transcription subunit 1 homolog) (NOT1H) (hNOT1) (CCR4-associated factor 1) [Tribolium castaneum]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2219 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2278

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2279 LLERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFES 2326

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858425|ref|XP_003704702.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 [Megachile rotundata]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2243 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2302

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2303 LLERLIVNRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFES 2350

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858423|ref|XP_003704701.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 [Megachile rotundata]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2269 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2328

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2329 LLERLIVNRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFES 2376

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030325|gb|EGI70068.1| CCR4-NOT transcription complex subunit 1 [Acromyrmex echinatior]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/108 (94%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2276 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRV 2335

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2336 LLERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFES 2383

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299778|ref|XP_319808.4| AGAP009057-PA [Anopheles gambiae str. PEST] gi|157013681|gb|EAA14758.4| AGAP009057-PA [Anopheles gambiae str. PEST]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 105/108 (97%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEAN+EAIQEQITRV
Sbjct: 2065 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCCILYLFAEANSEAIQEQITRV 2124

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITFIELIKNP+YKFWDH+FVHCAPEIE+LFES
Sbjct: 2125 LLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEIERLFES 2172

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785784|ref|XP_003250656.1| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 [Apis mellifera]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/108 (93%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLF+NAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2269 MDIFQNLAVDLDTEGRYLFVNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2328

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITF+ELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2329 LLERLIVNRPHPWGLLITFVELIKNPTYKFWTHEFVHCAPEIEKLFES 2376

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785786|ref|XP_395830.3| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 [Apis mellifera]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/108 (93%), Positives = 103/108 (95%)

Query: 1    MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
            MDIF N AVDLDTEGRYLF+NAIANQLRYPNSHTHYFSC LLYLFAEANTEAIQEQITRV
Sbjct: 2242 MDIFQNLAVDLDTEGRYLFVNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV 2301

Query: 61   LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            LLERLIVNRPHPWGLLITF+ELIKNP YKFW HEFVHCAPEIEKLFES
Sbjct: 2302 LLERLIVNRPHPWGLLITFVELIKNPTYKFWTHEFVHCAPEIEKLFES 2349

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
RGD|1308009	455	Cnot1 "CCR4-NOT transcription	0.75	0.237	0.925	2.7e-52
UNIPROTKB|E1BXD4	2129	LOC100858397 "Uncharacterized	0.75	0.050	0.925	1.1e-50
UNIPROTKB|F1MHU9	2371	CNOT1 "Uncharacterized protein	0.75	0.045	0.925	1.3e-50
UNIPROTKB|F1RFU3	2375	CNOT1 "Uncharacterized protein	0.75	0.045	0.925	1.3e-50
MGI|MGI:2442402	2375	Cnot1 "CCR4-NOT transcription	0.75	0.045	0.925	1.3e-50
UNIPROTKB|A5YKK6	2376	CNOT1 "CCR4-NOT transcription	0.75	0.045	0.925	1.3e-50
UNIPROTKB|G3V7M0	2376	Cnot1 "RCG39079" [Rattus norve	0.75	0.045	0.925	1.3e-50
FB|FBgn0085436	2505	Not1 "Not1" [Drosophila melano	0.75	0.043	0.916	3.8e-50
ZFIN|ZDB-GENE-040915-1	2375	cnot1 "CCR4-NOT transcription	0.75	0.045	0.907	1.2e-49
WB|WBGene00002845	2641	let-711 [Caenorhabditis elegan	0.75	0.040	0.703	2.8e-39

RGD|1308009 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:   327 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 386

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:   387 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 434

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0030331 "estrogen receptor binding" evidence=ISO

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=ISO

GO:0042974 "retinoic acid receptor binding" evidence=ISO

GO:0048387 "negative regulation of retinoic acid receptor signaling pathway" evidence=ISO

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO

GO:1900153 "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO

UNIPROTKB|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 542 (195.9 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2001 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2060

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2061 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2108

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2243 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2302

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2303 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2350

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354

GO:0005778 "peroxisomal membrane" evidence=IEA

MGI|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]

 Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0030331 "estrogen receptor binding" evidence=ISO

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=ISO

GO:0042974 "retinoic acid receptor binding" evidence=ISO

GO:0048387 "negative regulation of retinoic acid receptor signaling pathway" evidence=ISO

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO

GO:1900153 "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

UNIPROTKB|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS;IDA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IDA

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=IDA

GO:1900153 "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IMP

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0042974 "retinoic acid receptor binding" evidence=IDA

GO:0048387 "negative regulation of retinoic acid receptor signaling pathway" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]

 Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct:  2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct:  2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355

GO:0005778 "peroxisomal membrane" evidence=IEA

FB|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]

 Score = 538 (194.4 bits), Expect = 3.8e-50, P = 3.8e-50
 Identities = 99/108 (91%), Positives = 104/108 (96%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +L+LFAEAN+EAIQEQITRV
Sbjct:  2367 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEANSEAIQEQITRV 2426

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP+YKFWDH+FVHCAPEI KLFES
Sbjct:  2427 LLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEITKLFES 2474

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]

 Score = 533 (192.7 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 98/108 (90%), Positives = 102/108 (94%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEAN EAIQEQITRV
Sbjct:  2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRV 2306

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             LLERLIVNRPHPWGLLITFIELIKNP +KFW H+FVHCAPEIEKLF+S
Sbjct:  2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQS 2354

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

WB|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)]

 Score = 436 (158.5 bits), Expect = 2.8e-39, P = 2.8e-39
 Identities = 76/108 (70%), Positives = 88/108 (81%)

Query:     1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
             MDIF N A+ LDTEGRYL  N IANQLRYPN+HTHYFSC+ LYLF  +  + IQEQITR+
Sbjct:  2494 MDIFQNLAIQLDTEGRYLLFNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRI 2553

Query:    61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
             L ERL+  RPHPWGLLITFIELIKNP Y FW +EF  CAPEI++LF++
Sbjct:  2554 LFERLVALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPEIQRLFQN 2601

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0010467 "gene expression" evidence=IMP

GO:0040001 "establishment of mitotic spindle localization" evidence=IMP

GO:0030953 "astral microtubule organization" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZQ08	CNOT1_MOUSE	No assigned EC number	0.9259	0.75	0.0454	yes	N/A
A1A5H6	CNOT1_DANRE	No assigned EC number	0.9074	0.75	0.0454	yes	N/A
A0JP85	CNOT1_XENTR	No assigned EC number	0.9259	0.75	0.0452	yes	N/A
P87112	NOT1_SCHPO	No assigned EC number	0.5742	0.6736	0.0461	yes	N/A
A5YKK6	CNOT1_HUMAN	No assigned EC number	0.9259	0.75	0.0454	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
pfam04054	375	pfam04054, Not1, CCR4-Not complex component, Not1	5e-67
COG5103	2005	COG5103, CDC39, Cell division control protein, neg	2e-31
pfam04054	375	pfam04054, Not1, CCR4-Not complex component, Not1	4e-04

>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1

 Score =  207 bits (528), Expect = 5e-67
 Identities = 81/112 (72%), Positives = 91/112 (81%), Gaps = 4/112 (3%)

Query: 1   MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLF----AEANTEAIQEQ 56
           M +  N A +LD EGRY  LNAIANQLRYPNSHTHYFSC++L+LF     E+  E IQEQ
Sbjct: 260 MALLSNLANELDPEGRYYLLNAIANQLRYPNSHTHYFSCVILHLFGSDEWESQKEDIQEQ 319

Query: 57  ITRVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
           ITRVLLERLIVN+PHPWGLLITFIELIKNP YKFW+  F+  APEIEKLF+S
Sbjct: 320 ITRVLLERLIVNKPHPWGLLITFIELIKNPDYKFWELPFIKSAPEIEKLFDS 371

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]

 Score =  117 bits (294), Expect = 2e-31
 Identities = 52/101 (51%), Positives = 63/101 (62%), Gaps = 4/101 (3%)

Query: 12   DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLF--AEANTEA--IQEQITRVLLERLIV 67
                RY  L AI  QLRYP  HT+ FS + L  F     N +   I+EQ+T VLLER+I 
Sbjct: 1879 GPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIIC 1938

Query: 68   NRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
            NRPHPWGLLITF EL+KN  Y FW H ++    EI +LF+S
Sbjct: 1939 NRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDS 1979

Length = 2005

>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 108 SGWPLYAQLLIDIFKFLAPFL 128
            GWPLY +LLID+ KFL  FL
Sbjct: 64  KGWPLYVKLLIDLLKFLDEFL 84

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF04054	379	Not1: CCR4-Not complex component, Not1; InterPro:	100.0
KOG1831|consensus	1591		100.0
COG5103	2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831|consensus	1591		96.83
PF04054	379	Not1: CCR4-Not complex component, Not1; InterPro:	93.65
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.62

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human

Probab=100.00  E-value=3.3e-54  Score=374.05  Aligned_cols=112  Identities=71%  Similarity=1.189  Sum_probs=108.0

Q ss_pred             ChHHHHHHhccChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhh----hcChhHHHHHHHHHHHHHhhcCCCCchhHH
Q psy1281           1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFA----EANTEAIQEQITRVLLERLIVNRPHPWGLL   76 (144)
Q Consensus         1 ~~i~~~L~~~ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~----~~~~~~IqEqItRVLlERliv~rPHPWGll   76 (144)
                      |+++.+|++++|+||||++++||||||||||+|||||||+++++|+    +.++++|||||||||+||++|+||||||++
T Consensus       264 ~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~~~~~~~~~~IqEqItRVLLERliv~rPHPWGll  343 (379)
T PF04054_consen  264 VTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSSDMNDPNDEDIQEQITRVLLERLIVNRPHPWGLL  343 (379)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCCCccchhhhHHHHHHHHHHHHhcCCCCCccHH
Confidence            5789999999999999999999999999999999999999999999    445689999999999999999999999999


Q ss_pred             HHHHHHHhCCCccccccccccccHHHHHHHHhHHHH
Q psy1281          77 ITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPL  112 (144)
Q Consensus        77 itfiELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~  112 (144)
                      +||+||+||++|+||++||||++|||+++|+++++|
T Consensus       344 itfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~  379 (379)
T PF04054_consen  344 ITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH  379 (379)
T ss_pred             HHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999875

It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].

>KOG1831|consensus

Probab=100.00  E-value=3.6e-42  Score=330.63  Aligned_cols=114  Identities=74%  Similarity=1.243  Sum_probs=111.9

Q ss_pred             ChHHHHHHhccChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q psy1281           1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFI   80 (144)
Q Consensus         1 ~~i~~~L~~~ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqItRVLlERliv~rPHPWGllitfi   80 (144)
                      |||+.+|+.+||.||||.+++||+|||||||+|||||||+++++|.+++...|||||||+++||++|+||||||+++||+
T Consensus      1458 ~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~i~~~~lerii~nrPHpWGllitF~ 1537 (1591)
T KOG1831|consen 1458 MDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQITRVLLERIIVNRPHPWGLLITFT 1537 (1591)
T ss_pred             hhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcCCCCCchhHHHHH
Confidence            79999999999999999999999999999999999999999999999987889999999999999999999999999999


Q ss_pred             HHHhCCCccccccccccccHHHHHHHHhHHHHHH
Q psy1281          81 ELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYA  114 (144)
Q Consensus        81 ELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~~~  114 (144)
                      ||+|||.||||++|||+|+|||+++|++++++|.
T Consensus      1538 eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~ 1571 (1591)
T KOG1831|consen 1538 ELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCK 1571 (1591)
T ss_pred             HHHcCCCcccccCcccccCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999994

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=8.7e-36  Score=285.44  Aligned_cols=112  Identities=46%  Similarity=0.718  Sum_probs=106.2

Q ss_pred             HHHHHHhccChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcC----hhHHHHHHHHHHHHHhhcCCCCchhHHHH
Q psy1281           3 IFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEAN----TEAIQEQITRVLLERLIVNRPHPWGLLIT   78 (144)
Q Consensus         3 i~~~L~~~ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~----~~~IqEqItRVLlERliv~rPHPWGllit   78 (144)
                      ++-.+..+++++.||.++.||++||||||+||+|||++++++|.++.    .-.||||||||+|||+||+||||||+++|
T Consensus      1870 ~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~WGl~i~ 1949 (2005)
T COG5103        1870 MLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHPWGLLIT 1949 (2005)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCcchhhee
Confidence            45678899999999999999999999999999999999999998873    36799999999999999999999999999


Q ss_pred             HHHHHhCCCccccccccccccHHHHHHHHhHHHHHH
Q psy1281          79 FIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYA  114 (144)
Q Consensus        79 fiELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~~~  114 (144)
                      |+||+||.+||||++|||+.+|||.++|+++.+++.
T Consensus      1950 FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~ 1985 (2005)
T COG5103        1950 FTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVM 1985 (2005)
T ss_pred             HHHHhcccccchhcCcccccCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999988874

>KOG1831|consensus

Probab=96.83  E-value=0.00079  Score=67.77  Aligned_cols=90  Identities=33%  Similarity=0.552  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHhhcCCCC-chhHHHHHHHHHhCCCccccccccccccHHHHHHHHhHHHH
Q psy1281          35 HYFSCLLLYLFAEAN-TEAIQEQITRVLLERLIVNRPH-PWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPL  112 (144)
Q Consensus        35 ~~Fs~~ll~LF~~~~-~~~IqEqItRVLlERliv~rPH-PWGllitfiELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~  112 (144)
                      ..|+.++..+-+... .+.+-=.|..+..+-.+.-+|| =.|....+++|+..+  .+.-.-....       =+++|..
T Consensus      1203 Rlf~~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr--~li~~~L~~~-------~~k~~~~ 1273 (1591)
T KOG1831|consen 1203 RLFSMLLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHR--GLIPRMLAET-------NQKGWPL 1273 (1591)
T ss_pred             HHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccch--hHHHHHHHhc-------cccccHH
Confidence            355555555444331 2445556788888888999999 668999999999887  3333322222       2778999


Q ss_pred             HHHHHHhHHhhhcccchhHHH
Q psy1281         113 YAQLLIDIFKFLAPFLPQQQQ  133 (144)
Q Consensus       113 ~~q~l~~~~~~~~~~l~~~~~  133 (144)
                      ++|+++|+||||+|||||-+-
T Consensus      1274 ~~~llislfkfL~~ylrn~~~ 1294 (1591)
T KOG1831|consen 1274 YAQLLISLFKFLAPYLRNYEL 1294 (1591)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999753

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human

Probab=93.65  E-value=0.044  Score=48.53  Aligned_cols=74  Identities=31%  Similarity=0.663  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHhhcCCCC-chhHHHHHHHHHhCCCccccccccccccHHHHHHHHhHHHHHHHHHHhHHhhhcccch
Q psy1281          51 EAIQEQITRVLLERLIVNRPH-PWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLP  129 (144)
Q Consensus        51 ~~IqEqItRVLlERliv~rPH-PWGllitfiELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~~~q~l~~~~~~~~~~l~  129 (144)
                      +....++...+.+++..-+|- =.|....|+||+.++.  |.- ...+..|+     ++.|..++++|+|++||+.|+|+
T Consensus        18 ~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~--Flp-~lL~~~~~-----~~gW~~~~~Ll~~ll~Fl~~~l~   89 (379)
T PF04054_consen   18 EELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRM--FLP-KLLRNSPD-----QKGWPAYTRLLIDLLKFLGPYLK   89 (379)
T ss_pred             hhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHH--HHH-HHHhcCCC-----CCChHHHHHHHHHHHHHHHHhcc
Confidence            345568999999999999998 7899999999999883  322 11221333     58999999999999999999999


Q ss_pred             hHH
Q psy1281         130 QQQ  132 (144)
Q Consensus       130 ~~~  132 (144)
                      +.+
T Consensus        90 ~~~   92 (379)
T PF04054_consen   90 NEE   92 (379)
T ss_pred             ccc
Confidence            875

It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.62  E-value=18  Score=26.97  Aligned_cols=73  Identities=21%  Similarity=0.230  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHHHH-HHHHH---hhcCC-CCchhHHHHHHHHHh
Q psy1281          12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITR-VLLER---LIVNR-PHPWGLLITFIELIK   84 (144)
Q Consensus        12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqItR-VLlER---liv~r-PHPWGllitfiELik   84 (144)
                      ++++-.-.+.++-..|.|+|.|+-+.+-.++......-+..+..+|.. -.+++   ++..+ ..+=-+.--.+|++.
T Consensus        31 ~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~  108 (133)
T cd03561          31 KPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL  108 (133)
T ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            356777789999999999999999999999998877655556555544 44443   33332 123344444555554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	80.64

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=80.64  E-value=15  Score=27.14  Aligned_cols=90  Identities=16%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHH-HHHHHHHhh-cCC-----C-CchhHHHHHHHHHh
Q psy1281          13 TEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQI-TRVLLERLI-VNR-----P-HPWGLLITFIELIK   84 (144)
Q Consensus        13 ~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI-tRVLlERli-v~r-----P-HPWGllitfiELik   84 (144)
                      ++|-...+.||...|.++|.|+-.++-.+|......-+..++.+| .+-++++++ ...     + .|--+.--.+||+.
T Consensus        33 ~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~  112 (148)
T 1mhq_A           33 PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF  112 (148)
T ss_dssp             SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence            477888899999999999999999999999988765445564444 678877765 212     1 24567777788886


Q ss_pred             CCCccccccccccccHHHHHHHHh
Q psy1281          85 NPVYKFWDHEFVHCAPEIEKLFES  108 (144)
Q Consensus        85 n~~y~Fw~~pFv~~~PEi~~lf~~  108 (144)
                      .     |...|- ..|.|...++.
T Consensus       113 ~-----W~~~f~-~~p~i~~~y~~  130 (148)
T 1mhq_A          113 S-----WTVWFP-EDIKIRDAYQM  130 (148)
T ss_dssp             H-----HHHHCT-TCHHHHHHHHH
T ss_pred             H-----HHHHcC-CCchHHHHHHH
Confidence            4     666664 35665444443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00