Psyllid ID: psy12860

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGCT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEccccccccEEEEcccEEEEEccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHcccccccEEEcccEcccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEcccccccccccEEEEEccccccccccccccccEEEEEEccccccccccEEEccccEEEcccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqkpkslkkKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVstvdfgsggwrfefKSTIVGKISEKINLKEWVRFTMNIQSMykrapdsklkkGAVYLWIHnkdlqckcpkiklnkpylilgkekegnqpsgltmnAKSIVVEWKDELHDRMRQFQRRGCT
Flexible Loop (DISEMBL)
mqkpkslkkkkkkkkkrkkkkkkkkkkkkkirnkqklvFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTvdfgsggwrFEFKstivgkisekinlkEWVRFTMNIQSMykrapdskLKKGAVYLWIHnkdlqckcpkiKLNKPYLILGKekegnqpsgltmnAKSIVVEWKDELHDRMRQFQRRGCT
Low Complexity Region (SEG)
MQKPKSLkkkkkkkkkrkkkkkkkkkkkkkIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGCT
Disordered region (IsUnstruct)
***********************************KLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILG****************SIVVEWK****************
Disordered Region (DISOPRED)
*************************************VFEQLCINYANEHLQYYFNQHRAIVG**********************GGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKR********GAVYLWIHNKDLQCKCPKIKLNKPYLI****************AKSIVVEWKDELHDRMRQFQR****
Disordered Region (DISEMBL)
********************************NKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGCT
Disordered Region (DISPRO)
****KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQKPKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGCT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q90923	581	Netrin-3 (Fragment) OS=Ga	yes	N/A	0.479	0.163	0.427	2e-17
Q24567	726	Netrin-A OS=Drosophila me	yes	N/A	0.454	0.123	0.390	3e-16
Q2HXW4	600	Netrin-1 OS=Sus scrofa GN	yes	N/A	0.439	0.145	0.420	4e-16
Q90922	606	Netrin-1 OS=Gallus gallus	no	N/A	0.439	0.143	0.420	4e-16
Q24568	793	Netrin-B OS=Drosophila me	no	N/A	0.479	0.119	0.423	5e-16
O95631	604	Netrin-1 OS=Homo sapiens	yes	N/A	0.439	0.144	0.420	7e-16
O09118	604	Netrin-1 OS=Mus musculus	yes	N/A	0.439	0.144	0.420	7e-16
Q924Z9	604	Netrin-1 OS=Rattus norveg	yes	N/A	0.439	0.144	0.397	9e-14
P34710	612	Netrin unc-6 OS=Caenorhab	yes	N/A	0.434	0.140	0.310	4e-13
Q8WXR4	1341	Myosin-IIIb OS=Homo sapie	no	N/A	0.131	0.019	0.730	0.0002

>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 100 ISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILG 159
           I E   +  W +FT+NI S+YK   D ++K+G  +LWIH KDL CKCPKI+++K YL++G
Sbjct: 478 ILEMETVANWAKFTINILSVYK-CRDERVKRGDNFLWIHLKDLSCKCPKIQISKKYLVMG 536

Query: 160 KEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             +      GL  +  S+V++W+D    R+R+ QRR
Sbjct: 537 ISENSTDRPGLMADKNSLVIQWRDAWTRRLRKLQRR 572

Netrins control guidance of CNS commissural axons and peripheral motor axons.
Gallus gallus (taxid: 9031)

>sp|Q24567|NETA_DROME Netrin-A OS=Drosophila melanogaster GN=NetA PE=2 SV=2

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 15/105 (14%)

Query: 108 EWVRFTMNIQSMYKRA--------------PDSKLKKGAVYLWIHNKDLQCKCPKIKLNK 153
           E  RF + IQ+++KR+              P++ LK+G +   I  KDL+C+CP+I++N+
Sbjct: 621 EMERFDLQIQAVFKRSRPGESSGAGNVYGMPNTTLKRGPMTWIIPTKDLECRCPRIRVNR 680

Query: 154 PYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGCT 198
            YLILG++ E   P  L +   SIV+EWK++ + RM++FQRR  T
Sbjct: 681 SYLILGRDSEA-PPGYLGIGPHSIVIEWKEDWYRRMKRFQRRART 724

Netrins control guidance of CNS commissural axons at the midline and peripheral motor axons to their target muscles.

Drosophila melanogaster (taxid: 7227)

>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
           +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct: 509 DWWKFTVNIISVYKQGA-SRIRRGDQNLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query: 168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           SG+  +  S+V++W+D    R+R+FQ+R
Sbjct: 568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Sus scrofa (taxid: 9823)

>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
           +W +FT+NI S+YK+  + +L++G   LW+H KD+ CKCPK+K  K YL+LG  ++    
Sbjct: 511 DWWKFTVNIISVYKQGSN-RLRRGDQTLWVHAKDIACKCPKVKPMKKYLLLGSTEDSPDQ 569

Query: 168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           SG+  +  S+V++W+D    R+R+FQ+R
Sbjct: 570 SGIIADKSSLVIQWRDTWARRLRKFQQR 597

Netrins control guidance of CNS commissural axons and peripheral motor axons. Promotes neurite outgrowth from commissural axons but acts as a chemorepellent for trochlear motor axons. These effects are mediated by distinct receptors.

Gallus gallus (taxid: 9031)

>sp|Q24568|NETB_DROME Netrin-B OS=Drosophila melanogaster GN=NetB PE=1 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 9/104 (8%)

Query: 101 SEKINLK---EWVRFTMNIQSMYKRAP-----DSKLKKGAVYLWIHNKDLQCKCPKIKLN 152
           +EK +++   E  ++ +NIQ+++KR P      S L +G + L +  K ++C+CPKIKLN
Sbjct: 687 TEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSSLLGRGNMMLLVPRKSIECQCPKIKLN 746

Query: 153 KPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
           K YLILG++ E   P  L +   S+V+EWKDE   RM++FQRR 
Sbjct: 747 KSYLILGRDSEA-APGYLAIGPSSVVLEWKDEWSLRMKRFQRRA 789

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either fra or unc-5 receptors will lead to axon attraction or repulsion, respectively. While short-range repulsion requires both fra and unc-5 receptors, long-range repulsion only requires unc-5.

Drosophila melanogaster (taxid: 7227)

>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
           +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct: 509 DWWKFTVNIISVYKQGT-SRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query: 168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           SG+  +  S+V++W+D    R+R+FQ+R
Sbjct: 568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in tumorigenesis by regulating apoptosis.

Homo sapiens (taxid: 9606)

>sp|O09118|NET1_MOUSE Netrin-1 OS=Mus musculus GN=Ntn1 PE=1 SV=3

 Score = 84.0 bits (206), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
           +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct: 509 DWWKFTVNIISVYKQG-TSRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query: 168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           SG+  +  S+V++W+D    R+R+FQ+R
Sbjct: 568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Mus musculus (taxid: 10090)

>sp|Q924Z9|NET1_RAT Netrin-1 OS=Rattus norvegicus GN=Ntn1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
           +W +FT+NI S+YK+   S++++G   LWI ++D+  KCPKIK  K YL+LG  ++    
Sbjct: 509 DWWKFTVNIISVYKQGT-SRIRRGDQSLWIRSRDIAXKCPKIKPLKKYLLLGNAEDSPDQ 567

Query: 168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           SG+  +   +V++W+D    R R+FQ+R
Sbjct: 568 SGIVADKSXLVIQWRDTWARRXRKFQQR 595

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|P34710|UNC6_CAEEL Netrin unc-6 OS=Caenorhabditis elegans GN=unc-6 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 61/87 (70%), Gaps = 1/87 (1%)

Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
           W ++ + ++S++KR  ++ +++G   LWI  + + CKCPK+++ + YL+LGK    ++  
Sbjct: 513 WAKYKIVVESVFKRGTEN-MQRGETSLWISPQGVICKCPKLRVGRRYLLLGKNDSDHERD 571

Query: 169 GLTMNAKSIVVEWKDELHDRMRQFQRR 195
           GL +N ++++VEW+D++ D++ +F ++
Sbjct: 572 GLMVNPQTVLVEWEDDIMDKVLRFSKK 598

Component of an extracellular matrix cue that guides dorsoventral migrations on the epidermis. Required for the guidance of pioneer axons and migrating cells along the body wall. Its association with either unc-40 or unc-5 receptors will lead to axon attraction or repulsion, respectively.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8WXR4|MYO3B_HUMAN Myosin-IIIb OS=Homo sapiens GN=MYO3B PE=2 SV=4

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 33  NKQKLVFEQLCINYANEHLQYYFNQH 58
           N Q+  FEQLCIN ANE +QYYFNQH
Sbjct: 728 NFQRNSFEQLCINIANEQIQYYFNQH 753

Probable actin-based motor with a protein kinase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
328721582	242	PREDICTED: netrin-1-like [Acyrthosiphon	0.515	0.421	0.549	5e-28
242021734	732	Netrin-1 precursor, putative [Pediculus	0.484	0.131	0.597	3e-26
110766241	140	PREDICTED: netrin-B-like, partial [Apis	0.575	0.814	0.372	1e-21
380026860	673	PREDICTED: netrin-A-like [Apis florea]	0.575	0.169	0.372	1e-21
321464154	603	hypothetical protein DAPPUDRAFT_56315 [D	0.505	0.165	0.446	4e-21
332028078	236	Netrin-1 [Acromyrmex echinatior]	0.489	0.411	0.403	4e-21
307200587	252	Netrin-1 [Harpegnathos saltator]	0.464	0.365	0.423	5e-21
307183131	297	Netrin-1 [Camponotus floridanus]	0.464	0.309	0.413	3e-20
350399310	652	PREDICTED: LOW QUALITY PROTEIN: netrin-B	0.393	0.119	0.5	3e-20
340727831	678	PREDICTED: netrin-B-like [Bombus terrest	0.393	0.115	0.5	3e-20

>gi|328721582|ref|XP_001947857.2| PREDICTED: netrin-1-like [Acyrthosiphon pisum]

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 77/102 (75%)

Query: 95  TIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKP 154
            I+GK+SE I  K W +FTMN+QS+YKR+  S+L++G    WIH+ DL+CKCPKIK  + 
Sbjct: 137 AILGKMSEPIVSKNWAKFTMNVQSVYKRSQGSRLRRGPTTFWIHDNDLKCKCPKIKPGRL 196

Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
           YLILGKE +G +  GL +  +SIV+EW++E H+RMR+FQRR 
Sbjct: 197 YLILGKENDGERRDGLVLTQRSIVIEWREEWHNRMRRFQRRA 238

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021734|ref|XP_002431298.1| Netrin-1 precursor, putative [Pediculus humanus corporis] gi|212516566|gb|EEB18560.1| Netrin-1 precursor, putative [Pediculus humanus corporis]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 100 ISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILG 159
           I E+  + EWV+FT+N+QS+YK+A DS LK+G   LW H  DL CKCPKIK NK YL+LG
Sbjct: 633 IQERETVGEWVKFTVNVQSVYKKARDSNLKRGNTLLWAHINDLTCKCPKIKTNKSYLVLG 692

Query: 160 KEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
           KE +G+   GLT++ KSIV+EWKDE H RM++FQRR 
Sbjct: 693 KELDGDH-QGLTVSRKSIVIEWKDEWHRRMKRFQRRA 728

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110766241|ref|XP_001120123.1| PREDICTED: netrin-B-like, partial [Apis mellifera]

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 23/137 (16%)

Query: 50  HLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEW 109
           +L  Y  +  AI+G+I+++   N         D  S G      +++ G +        W
Sbjct: 13  NLNKYCKRDYAILGRITDRHKKN---------DGSSAG------TSVSGSV--------W 49

Query: 110 VRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSG 169
           +RFT+N+  +YK++P+S++++G V+L++H+ DL C+CPKIK N+ YLILG+E +G    G
Sbjct: 50  IRFTLNVDFIYKKSPNSRIRRGDVFLYVHSADLACRCPKIKPNRSYLILGQESDGGGQGG 109

Query: 170 LTMNAKSIVVEWKDELH 186
           LT+  +SIV+EW+DE H
Sbjct: 110 LTVTQRSIVIEWRDEWH 126

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026860|ref|XP_003697158.1| PREDICTED: netrin-A-like [Apis florea]

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 23/137 (16%)

Query: 50  HLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEW 109
           +L  Y  +  AI+G+I+++   N         D  S G      +++ G +        W
Sbjct: 538 NLNKYCKRDYAILGRITDRHKKN---------DGSSAG------TSVSGSV--------W 574

Query: 110 VRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSG 169
           +RFT+N+  +YK++P+S++++G V+L++H+ DL C+CPKIK N+ YLILG+E +G    G
Sbjct: 575 IRFTLNVDFIYKKSPNSRIRRGDVFLYVHSADLACRCPKIKPNRSYLILGQESDGGGQGG 634

Query: 170 LTMNAKSIVVEWKDELH 186
           LT+  +SIV+EW+DE H
Sbjct: 635 LTVTQRSIVIEWRDEWH 651

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464154|gb|EFX75164.1| hypothetical protein DAPPUDRAFT_56315 [Daphnia pulex]

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 72/103 (69%), Gaps = 3/103 (2%)

Query: 96  IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
           ++  I+ +    EWV+FTMN+Q+++K+  D+++++G  Y W+   DL CKCPKIK+NK Y
Sbjct: 497 LLATITARETAGEWVKFTMNVQTIFKKTRDNRVRRGLTYFWVRMSDLACKCPKIKINKSY 556

Query: 156 LILGKEKEGN--QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
           LILG  ++    +P G+ +N +SIV+EWK E   RMR+F+RR 
Sbjct: 557 LILGGSEDSKYGRP-GIELNTRSIVIEWKAEWISRMRRFERRA 598

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028078|gb|EGI68129.1| Netrin-1 [Acromyrmex echinatior]

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 72/109 (66%), Gaps = 12/109 (11%)

Query: 90  FEFKSTIVGKISEK------------INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWI 137
           +     I+G+I+++            ++   W+RFT+N+  +YK+ P+S++++G V L++
Sbjct: 114 YSLDRAILGRITDRHKKSDSSQTGTSVSGTSWIRFTLNVDFIYKKNPNSRIRRGDVSLYV 173

Query: 138 HNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELH 186
           H+ DL C+CPKIK NK YLILG+E +G    GLT+  +SIV+EW+DE H
Sbjct: 174 HSADLACRCPKIKPNKSYLILGQESDGGGQGGLTVTQRSIVIEWRDEWH 222

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200587|gb|EFN80728.1| Netrin-1 [Harpegnathos saltator]

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 71/104 (68%), Gaps = 12/104 (11%)

Query: 95  TIVGKISEK------------INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDL 142
            I+G+I+++            ++   W+RFT+N+  +YK+ P+S++++G V L++H+ DL
Sbjct: 136 AILGRITDRHKKSDGSQPGTSVSGTSWIRFTLNVDFIYKKNPNSRIRRGDVSLYVHSADL 195

Query: 143 QCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELH 186
            C+CPKIK NK YLILG+E +G    GLT+  +SIV+EW+DE H
Sbjct: 196 ACRCPKIKPNKSYLILGQESDGGGQGGLTVTQRSIVIEWRDEWH 239

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183131|gb|EFN70048.1| Netrin-1 [Camponotus floridanus]

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 70/104 (67%), Gaps = 12/104 (11%)

Query: 95  TIVGKISEK------------INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDL 142
            I+G+I+++            ++   W+RFT+N+  +YK+  +S++++G V L++H+ DL
Sbjct: 180 AILGRITDRHKKSDGSQSGTSVSGTSWIRFTLNVDFIYKKNSNSRIRRGDVSLYVHSADL 239

Query: 143 QCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELH 186
            C+CPKIK NK YLILG+E +G    GLT+  +SIV+EW+DE H
Sbjct: 240 ACRCPKIKPNKSYLILGQENDGGGQGGLTVTQRSIVIEWRDEWH 283

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399310|ref|XP_003485486.1| PREDICTED: LOW QUALITY PROTEIN: netrin-B-like [Bombus impatiens]

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 62/78 (79%)

Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
           W+RFT+N+  +YK++ +S++++G V+L++H+ DL C+CPKIK N+ YLILG+E +G    
Sbjct: 561 WIRFTLNVDFIYKKSSNSRIRRGDVFLYVHSADLACRCPKIKPNRSYLILGQESDGGGQG 620

Query: 169 GLTMNAKSIVVEWKDELH 186
           GLT+  +SIV+EW+DE H
Sbjct: 621 GLTVTQRSIVIEWRDEWH 638

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727831|ref|XP_003402238.1| PREDICTED: netrin-B-like [Bombus terrestris]

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 62/78 (79%)

Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
           W+RFT+N+  +YK++ +S++++G V+L++H+ DL C+CPKIK N+ YLILG+E +G    
Sbjct: 587 WIRFTLNVDFIYKKSSNSRIRRGDVFLYVHSADLACRCPKIKPNRSYLILGQESDGGGQG 646

Query: 169 GLTMNAKSIVVEWKDELH 186
           GLT+  +SIV+EW+DE H
Sbjct: 647 GLTVTQRSIVIEWRDEWH 664

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|Q90923	581	NTN3 "Netrin-3" [Gallus gallus	0.479	0.163	0.427	6e-20
UNIPROTKB|F1NK85	330	NTN1 "Netrin-1" [Gallus gallus	0.707	0.424	0.350	1.2e-19
UNIPROTKB|F1NEW2	336	NTN1 "Netrin-1" [Gallus gallus	0.479	0.282	0.427	5.1e-19
UNIPROTKB|Q90922	606	NTN1 "Netrin-1" [Gallus gallus	0.439	0.143	0.420	3.6e-18
ZFIN|ZDB-GENE-990415-169	603	ntn1a "netrin 1a" [Danio rerio	0.439	0.144	0.431	1.2e-17
UNIPROTKB|Q2HXW4	600	NTN1 "Netrin-1" [Sus scrofa (t	0.439	0.145	0.420	2.4e-16
UNIPROTKB|F1N0C7	603	NTN1 "Uncharacterized protein"	0.439	0.144	0.420	2.4e-16
UNIPROTKB|O95631	604	NTN1 "Netrin-1" [Homo sapiens	0.439	0.144	0.420	2.4e-16
MGI|MGI:105088	604	Ntn1 "netrin 1" [Mus musculus	0.439	0.144	0.420	2.4e-16
UNIPROTKB|F1LPC8	604	Ntn1 "Netrin-1" [Rattus norveg	0.439	0.144	0.420	2.4e-16

UNIPROTKB|Q90923 NTN3 "Netrin-3" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
 Identities = 41/96 (42%), Positives = 62/96 (64%)

Query:   100 ISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILG 159
             I E   +  W +FT+NI S+YK   D ++K+G  +LWIH KDL CKCPKI+++K YL++G
Sbjct:   478 ILEMETVANWAKFTINILSVYK-CRDERVKRGDNFLWIHLKDLSCKCPKIQISKKYLVMG 536

Query:   160 KEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
               +      GL  +  S+V++W+D    R+R+ QRR
Sbjct:   537 ISENSTDRPGLMADKNSLVIQWRDAWTRRLRKLQRR 572

GO:0005102 "receptor binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007520 "myoblast fusion" evidence=IDA

UNIPROTKB|F1NK85 NTN1 "Netrin-1" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 54/154 (35%), Positives = 81/154 (52%)

Query:    55 FNQHRAIVGK-ISEKINTNLCGVVVSTVDFGS------GGWRFEFKSTIVGKISEKINLK 107
             F Q R+ V   ISE      C +  S  D  S      G ++   K         ++N+ 
Sbjct:   170 FQQSRSPVAPCISESCARTTCTLCSSPADCDSYCKPAKGNYKINMKKYCKKDYVVQVNIL 229

Query:   108 E------WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKE 161
             E      W +FT+NI S+YK   D ++K+G  +LWIH KDL CKCPKI+++K YL++G  
Sbjct:   230 EMETVANWAKFTINILSVYK-CRDERVKRGDNFLWIHLKDLSCKCPKIQISKKYLVMGIS 288

Query:   162 KEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             +      GL  +  S+V++W+D    R+R+ QRR
Sbjct:   289 ENSTDRPGLMADKNSLVIQWRDAWTRRLRKLQRR 322

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1NEW2 NTN1 "Netrin-1" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 41/96 (42%), Positives = 62/96 (64%)

Query:   100 ISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILG 159
             I E   +  W +FT+NI S+YK   D ++K+G  +LWIH KDL CKCPKI+++K YL++G
Sbjct:   233 ILEMETVANWAKFTINILSVYK-CRDERVKRGDNFLWIHLKDLSCKCPKIQISKKYLVMG 291

Query:   160 KEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
               +      GL  +  S+V++W+D    R+R+ QRR
Sbjct:   292 ISENSTDRPGLMADKNSLVIQWRDAWTRRLRKLQRR 327

GO:0005102 "receptor binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q90922 NTN1 "Netrin-1" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   ++L++G   LW+H KD+ CKCPK+K  K YL+LG  ++    
Sbjct:   511 DWWKFTVNIISVYKQG-SNRLRRGDQTLWVHAKDIACKCPKVKPMKKYLLLGSTEDSPDQ 569

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   570 SGIIADKSSLVIQWRDTWARRLRKFQQR 597

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071944 "cell periphery" evidence=IDA

ZFIN|ZDB-GENE-990415-169 ntn1a "netrin 1a" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 38/88 (43%), Positives = 63/88 (71%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             EW +FT+NI S+YK+  +S++++G  +LW+  KD+ CKCPKIK  K YL+LG +++    
Sbjct:   508 EWWKFTVNIISVYKQG-ESRIRRGDQFLWVRAKDVACKCPKIKSGKKYLLLGNDEDSPGQ 566

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   567 SGMVADKGSLVIQWRDTWARRLRKFQQR 594

GO:0033564 "anterior/posterior axon guidance" evidence=IMP

GO:0048665 "neuron fate specification" evidence=IMP

GO:0016525 "negative regulation of angiogenesis" evidence=IMP

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0005576 "extracellular region" evidence=IEA

GO:0001525 "angiogenesis" evidence=IMP

GO:0016358 "dendrite development" evidence=IGI

UNIPROTKB|Q2HXW4 NTN1 "Netrin-1" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct:   509 DWWKFTVNIISVYKQGA-SRIRRGDQNLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|F1N0C7 NTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct:   508 DWWKFTVNIISVYKQGT-SRIRRGDQNLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 566

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   567 SGIVADKSSLVIQWRDTWARRLRKFQQR 594

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

UNIPROTKB|O95631 NTN1 "Netrin-1" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct:   509 DWWKFTVNIISVYKQGT-SRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

GO:0006915 "apoptotic process" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

MGI|MGI:105088 Ntn1 "netrin 1" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct:   509 DWWKFTVNIISVYKQGT-SRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

GO:0001764 "neuron migration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=ISO

GO:0005604 "basement membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007409 "axonogenesis" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IGI

GO:0030334 "regulation of cell migration" evidence=IMP;IDA

GO:0030517 "negative regulation of axon extension" evidence=IDA

GO:0030879 "mammary gland development" evidence=IGI

GO:0033564 "anterior/posterior axon guidance" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IDA

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0045773 "positive regulation of axon extension" evidence=IDA

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI

GO:0071944 "cell periphery" evidence=ISO

UNIPROTKB|F1LPC8 Ntn1 "Netrin-1" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 37/88 (42%), Positives = 61/88 (69%)

Query:   108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167
             +W +FT+NI S+YK+   S++++G   LWI ++D+ CKCPKIK  K YL+LG  ++    
Sbjct:   509 DWWKFTVNIISVYKQGT-SRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQ 567

Query:   168 SGLTMNAKSIVVEWKDELHDRMRQFQRR 195
             SG+  +  S+V++W+D    R+R+FQ+R
Sbjct:   568 SGIVADKSSLVIQWRDTWARRLRKFQQR 595

GO:0001764 "neuron migration" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
cd03579	115	cd03579, NTR_netrin-1_like, NTR domain, Netrin-1-l	2e-33
smart00643	114	smart00643, C345C, Netrin C-terminal Domain	3e-13
pfam01759	108	pfam01759, NTR, UNC-6/NTR/C345C module	5e-13
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	2e-08
smart00242	677	smart00242, MYSc, Myosin	2e-08
cd00124	679	cd00124, MYSc, Myosin motor domain	1e-07
cd03523	105	cd03523, NTR_like, NTR_like domain; a beta barrel	1e-07
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	3e-07
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	4e-07
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	2e-06
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	2e-06
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	3e-06
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	4e-06
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	1e-05
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	3e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-05
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	3e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	9e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	3e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	6e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	0.002
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.003

>gnl|CDD|239634 cd03579, NTR_netrin-1_like, NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C

 Score =  115 bits (289), Expect = 2e-33
 Identities = 43/100 (43%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 96  IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
           +  ++  +    EW +FT+N+Q++YKR   S+L++G   LW+  KDL CKCPK+K+ K Y
Sbjct: 11  VQAQVLSRETAGEWAKFTVNVQTVYKRGT-SRLRRGDQPLWVPRKDLACKCPKLKVGKSY 69

Query: 156 LILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
           L+LGK+++  +  GL ++ +S+V+EW+DE   R+R+FQRR
Sbjct: 70  LLLGKDEDSPERGGLILDKRSLVIEWRDEWARRLRRFQRR 109

elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. These proteins may be chemoattractive to some neurons and chemorepellant for others. In the case of netrin-1, attraction and repulsion responses are mediated by the DCC and UNC-5 receptor families. The biological activities of C. elegans UNC-6, which may either attract or repel migrating cells or axons, are mediated by its different domains. The C-terminal NTR domain of UNC-6 has been shown to inhibit axon branching activity. Length = 115

>gnl|CDD|214759 smart00643, C345C, Netrin C-terminal Domain

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKI-KLNKPYLILGKE---KE 163
            + ++T+ I  + K   D +L +G   L +      C+CP + KL K YLI+GK     +
Sbjct: 25  GFDKYTVKILEVIKSGTD-ELVRGKNKLRVFISRASCRCPLLLKLGKSYLIMGKSGDLWD 83

Query: 164 GNQPSGLTMNAKSIVVEWKDELHDRMRQFQR 194
                   +   S V EW  E   R+R+ Q+
Sbjct: 84  AKGRGQYVLGKNSWVEEWPTEEECRLRRLQK 114

Length = 114

>gnl|CDD|216684 pfam01759, NTR, UNC-6/NTR/C345C module

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 96  IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
              K+        +  +T+ ++ +YK   D +++ G V L++  +DL CKCPK+   K Y
Sbjct: 10  YKVKVLSVEEEGSFDIYTVRVKEVYKEGTD-RVRGGKVRLFVSRRDL-CKCPKLLPGKEY 67

Query: 156 LILGKE--KEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQR 194
           LI+GK    +        ++  + V +W D+   R+R+ Q+
Sbjct: 68  LIMGKSGDLDSKGRGRYVLDPNTWVEKWPDKWECRLRRLQK 108

Sequence similarity between netrin UNC-6 and C345C complement protein family members, and hence the existence of the UNC-6 module, was first reported in. Subsequently, many additional members of the family were identified on the basis of sequence similarity between the C-terminal domains of netrins, complement proteins C3, C4, C5, secreted frizzled-related proteins, and type I pro-collagen C-proteinase enhancer proteins (PCOLCEs), which are homologous with the N-terminal domains of tissue inhibitors of metalloproteinases (TIMPs). The TIMPs are classified as a separate family in Pfam (pfam00965). This expanded domain family has been named as the NTR module. Length = 108

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 19/20 (95%), Positives = 19/20 (95%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINYANE LQYYFNQH
Sbjct: 395 FEQLCINYANEQLQYYFNQH 414

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 17/20 (85%), Positives = 18/20 (90%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINYANE LQ +FNQH
Sbjct: 387 FEQLCINYANEKLQQFFNQH 406

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 17/20 (85%), Positives = 18/20 (90%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINYANE LQ +FNQH
Sbjct: 380 FEQLCINYANEKLQQFFNQH 399

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|239600 cd03523, NTR_like, NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 96  IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
           +  KI E     + V++ + I  +YK       K      +          P +   + Y
Sbjct: 10  VRAKIKEIKEENDDVKYEVKIIKIYKTGKAKADKADLR-FYYTAPACCPCHPILNPGREY 68

Query: 156 LILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQF 192
           LI+GKE++     GL ++  S V  W      + R+ 
Sbjct: 69  LIMGKEED--SQGGLVLDPLSFVEPWSPLSLRQDRRL 103

In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex. Length = 105

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 33  NKQKLVFEQLCINYANEHLQYYFNQH 58
           N +K  FEQLCIN ANE +QYYFNQH
Sbjct: 385 NFKKNSFEQLCINIANEQIQYYFNQH 410

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 16/20 (80%), Positives = 18/20 (90%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINYANE+LQY FN+ 
Sbjct: 379 FEQLCINYANENLQYLFNKI 398

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQ CIN  NE LQ +FNQH
Sbjct: 385 FEQFCINLTNEKLQQHFNQH 404

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 39  FEQLCINYANEHLQYYFNQHRAIV 62
           FEQLCINYANE LQ +FN H   +
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKL 404

Length = 679

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCIN+ANE+LQ +F QH
Sbjct: 380 FEQLCINFANENLQQFFVQH 399

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 16/20 (80%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQ CINYANE LQ  FNQH
Sbjct: 386 FEQFCINYANEKLQQQFNQH 405

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ +FN H
Sbjct: 392 FEQLCINYTNEKLQQFFNHH 411

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 35  QKLVFEQLCINYANEHLQYYFNQH 58
            K  FEQ CINYANE LQ +FN+H
Sbjct: 379 DKNSFEQFCINYANERLQQHFNRH 402

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
           K  + + +KK+K+K K K KK+ +  K I  ++K
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 16/20 (80%), Positives = 17/20 (85%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ +FNQH
Sbjct: 446 FEQLCINYTNEKLQQFFNQH 465

Length = 1463

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 2   QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
              K  +KK+K+K+K K KK+ +  K    R K  
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
             K +  K+ +KK+++K+K K KK+ +  +N  K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
             K  KK   K+ ++K+K+K+K K KK+ R+ + +
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
           K      KK   K+ +KK+K+K+K K K R++  
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 4   PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
           PK  KKK+++KK +K+KKKKK+KKK K R K+ 
Sbjct: 380 PKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
           KP   K+++KK +KRKKKKK+KKK KK+ +  +K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
            P   K  K  KK   K+ +KK+K+K+K + K++
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
             K   K  KK   ++ +KK+K+K+K K++ + +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 3   KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
           K     KK   K+  KK+K+K+K K KK     K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)

Query: 2   QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
           + PK  +++KK +K++KKKK+KKK KK+K + +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 2   QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
           +K K  +K K KK+ R  K   K++K   
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430

Length = 434

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 39  FEQLCINYANEHLQYYF 55
           FEQ CINY NE LQ  F
Sbjct: 384 FEQFCINYVNEKLQQIF 400

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 39  FEQLCINYANEHLQYYFNQ 57
           FEQ CINY NE LQ +FN+
Sbjct: 415 FEQFCINYCNEKLQQFFNE 433

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 2   QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
           ++ K  +K+KKKKK++KK KK+KKK +K
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 5   KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
           K LK  +K +KK +K K K +KKK K    +  +F
Sbjct: 66  KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
PTZ00014	821	myosin-A; Provisional	99.97
KOG0164|consensus	1001		99.97
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	99.97
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	99.97
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	99.97
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	99.97
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	99.97
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	99.97
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	99.97
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	99.96
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	99.96
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	99.96
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	99.96
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	99.96
KOG0163|consensus	1259		99.94
KOG0162|consensus	1106		99.94
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	99.94
KOG0160|consensus	862		99.93
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	99.92
KOG0161|consensus	1930		99.91
cd03578	111	NTR_netrin-4_like NTR domain, Netrin-4-like subfam	99.88
cd03579	115	NTR_netrin-1_like NTR domain, Netrin-1-like subfam	99.78
KOG4229|consensus	1062		99.74
cd03581	111	NTR_Sfrp3_like NTR domain, Secreted frizzled-relat	99.72
cd03576	124	NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollag	99.71
KOG3512|consensus	592		99.7
smart00643	114	C345C Netrin C-terminal Domain.	99.45
PF01759	111	NTR: UNC-6/NTR/C345C module; InterPro: IPR018933 T	99.39
cd03523	105	NTR_like NTR_like domain; a beta barrel with an ol	99.05
cd03582	150	NTR_complement_C5 NTR/C345C domain, complement C5	99.01
cd03574	147	NTR_complement_C345C NTR/C345C domain; The NTR dom	98.96
cd03584	153	NTR_complement_C4 NTR/C345C domain, complement C4	98.87
cd03577	116	NTR_TIMP_like NTR domain, TIMP-like subfamily; TIM	98.3
cd03580	126	NTR_Sfrp1_like NTR domain, Secreted frizzled-relat	98.26
cd03583	149	NTR_complement_C3 NTR/C345C domain, complement C3	98.24
cd03575	109	NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN pr	96.77
PF00965	181	TIMP: Tissue inhibitor of metalloproteinase; Inter	91.85

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=2.7e-35  Score=287.70  Aligned_cols=160  Identities=21%  Similarity=0.263  Sum_probs=129.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----cccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISE--K  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~--~  103 (198)
                      .|+|+.||||||||||+||+|||.|++|+|++||    +||.+|||+|++|+|.|||+||||+|     ||++.+++  +
T Consensus       438 FEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQ----EeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~  513 (1463)
T COG5022         438 FEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQ----EEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECV  513 (1463)
T ss_pred             hhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhc
Confidence            5999999999999999999999999999999965    99999999999999999999999987     68888877  3


Q ss_pred             ccchhHHHHHHHHHHhhcc--CC---CCCCCCCceEEEEecCccccCCCCcc-cCccee------eecccCCC------C
Q psy12860        104 INLKEWVRFTMNIQSMYKR--AP---DSKLKKGAVYLWIHNKDLQCKCPKIK-LNKPYL------ILGKEKEG------N  165 (198)
Q Consensus       104 ~~~g~~~~f~~kv~~v~K~--~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~-~~r~yL------Ilg~~~~~------~  165 (198)
                      -+.+++.+|+.++...+..  +|   .+|++.+.|.|.||||||+|++.|+. .|+|-|      +++.+...      +
T Consensus       514 ~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~  593 (1463)
T COG5022         514 MPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFD  593 (1463)
T ss_pred             CCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhh
Confidence            4556678999999888872  12   35677779999999999999999964 478776      23322110      0


Q ss_pred             --CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        166 --QPSGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       166 --~~~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                        ....--..++|++..|+.|+.+||..|.+
T Consensus       594 ~~~~~~~K~~~pT~gs~~K~sl~~Lm~tl~s  624 (1463)
T COG5022         594 DEENIESKGRFPTLGSRFKESLNSLMSTLNS  624 (1463)
T ss_pred             hhhhccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence              00011245689999999999999999875

>PTZ00014 myosin-A; Provisional

Probab=99.97  E-value=4.7e-33  Score=267.58  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=129.2

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----cccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISE--KI  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~--~~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|.||++||||++    ||+++|++  .-
T Consensus       472 FE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~Eq----eeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~  547 (821)
T PTZ00014        472 FEVFKNNSLEQLFINITNEMLQKNFVDIVFERES----KLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLA  547 (821)
T ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCC
Confidence            4899999999999999999999999999999865    99999999999999999999999976    78888877  33


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCCC-CCCceEEEEecCccccCCCCccc-Cccee------eecccCCC-------C-
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSKL-KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG-------N-  165 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~ri-~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~-------~-  165 (198)
                      +.+++.+|+.++++.++.+|   .++. ....|+|.||||+|+|++.++.. |+|.|      +|..+...       . 
T Consensus       548 p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~  627 (821)
T PTZ00014        548 PGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGV  627 (821)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccc
Confidence            45677899999999888764   2332 24689999999999999999755 78776      22222210       0 


Q ss_pred             -CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                       ...+-.....||+.+|+.||..||..|.+-
T Consensus       628 ~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t  658 (821)
T PTZ00014        628 EVEKGKLAKGQLIGSQFLNQLDSLMSLINST  658 (821)
T ss_pred             ccccccccCCCcHHHHHHHHHHHHHHHHhcc
Confidence             011122345799999999999999999764

>KOG0164|consensus

Probab=99.97  E-value=1e-32  Score=255.08  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=130.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc---
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK---  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~---  103 (198)
                      +|.|+.|||||||||||||+|||.|+..+++.    ||+||++|||.|.+|+|++|++|+||.|    ||++++++.   
T Consensus       385 feif~~NSFEQfcINYCNEKLQQlFIel~LKq----EQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~  460 (1001)
T KOG0164|consen  385 FEIFQDNSFEQFCINYCNEKLQQLFIELVLKQ----EQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLR  460 (1001)
T ss_pred             EEeecCCcHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcC
Confidence            69999999999999999999999999999987    4599999999999999999999999987    899999873   


Q ss_pred             ccchhHHHHHHHHHHhhccCC----------CCCCCCCceEEEEecCccccCCCCccc-Ccceee------ecc-cCC--
Q psy12860        104 INLKEWVRFTMNIQSMYKRAP----------DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGK-EKE--  163 (198)
Q Consensus       104 ~~~g~~~~f~~kv~~v~K~~p----------~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~-~~~--  163 (198)
                      +..-++..|+..+...++.+|          ...+..++|.|.||||||+|++.||.. |+|.|.      |-. .++  
T Consensus       461 ~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l  540 (1001)
T KOG0164|consen  461 PGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLL  540 (1001)
T ss_pred             CCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchH
Confidence            444456789998888887764          122345689999999999999999866 555441      222 222  


Q ss_pred             ---CC----CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 ---GN----QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 ---~~----~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                         .|    ....+.-.|.|.+++|+.|+..||..|+.++
T Consensus       541 ~~~fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKe  580 (1001)
T KOG0164|consen  541 KSLFPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKE  580 (1001)
T ss_pred             HHhCCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcC
Confidence               11    1113456889999999999999999999876

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=99.97  E-value=1.6e-32  Score=260.05  Aligned_cols=161  Identities=20%  Similarity=0.252  Sum_probs=130.2

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|.+|||+|+.|+|.||++|+||++    ||+++|++.  -
T Consensus       377 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq----~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~  452 (674)
T cd01384         377 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQ----EEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF  452 (674)
T ss_pred             ccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence            4899999999999999999999999999999865    99999999999999999999999976    688888762  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC---------C
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG---------N  165 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~---------~  165 (198)
                      +.+++..|+.+++..++.+|   .++..+..|+|.||||+|+|++.|+.. |+|.|      +|..++..         +
T Consensus       453 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~  532 (674)
T cd01384         453 PKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLP  532 (674)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccc
Confidence            45667899999999888764   355667799999999999999999755 77776      22222210         0


Q ss_pred             CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        166 QPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       166 ~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      ....-.....||+.+|+.||..||..|.+-
T Consensus       533 ~~~~~~~k~~tv~~~fk~~L~~L~~~L~~t  562 (674)
T cd01384         533 EETSKSSKFSSIGSRFKQQLQSLMETLSTT  562 (674)
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHhcc
Confidence            011122345799999999999999999763

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=99.97  E-value=5.1e-32  Score=256.67  Aligned_cols=161  Identities=21%  Similarity=0.247  Sum_probs=128.3

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+||++|+++||..||    ++|..|||+|..|+|.||++||||++    ||+++|++.  -
T Consensus       375 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~Eq----eeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~  450 (677)
T cd01383         375 FESFDKNSFEQFCINYANERLQQHFNRHLFKLEQ----EEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTF  450 (677)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcC
Confidence            5899999999999999999999999999999865    99999999999999999999999975    788888773  3


Q ss_pred             cchhHHHHHHHHHHhhccCCC-CCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC-------------
Q psy12860        105 NLKEWVRFTMNIQSMYKRAPD-SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE-------------  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p~-~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~-------------  163 (198)
                      +.+++.+|+.+++..++.+|. ...+...|.|.||||+|+|++.|+.. |+|.|-      |..+..             
T Consensus       451 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~  530 (677)
T cd01383         451 PNATDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQ  530 (677)
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhcc
Confidence            456679999999988887642 22235689999999999999999755 777651      211110             


Q ss_pred             CC--C----CCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 GN--Q----PSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 ~~--~----~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      ++  +    .........||+.+|+.||..||..|.+-
T Consensus       531 s~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t  568 (677)
T cd01383         531 SPVVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENT  568 (677)
T ss_pred             ccccccccccccccccCcchHHHHHHHHHHHHHHHhCC
Confidence            00  0    01122356899999999999999999753

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=99.97  E-value=9.6e-32  Score=255.50  Aligned_cols=161  Identities=19%  Similarity=0.263  Sum_probs=128.4

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---ccccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISEK--IN  105 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~~--~~  105 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|.+|||+|+.|+|.||++||||++   ||+++|++.  -+
T Consensus       378 FE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq----~~Y~~EgI~~~~i~f~DN~~~ldLie~~~Gil~lLdee~~~p  453 (691)
T cd01380         378 FETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQ----EEYLKEGIEWTFIDFYDNQPCIDLIESKLGILSLLDEECRLP  453 (691)
T ss_pred             ccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHhcCCCCccccCCCCHHHHHHHhCCCchHHHhHHhhcCC
Confidence            4899999999999999999999999999999855    99999999999999999999999986   677788763  34


Q ss_pred             chhHHHHHHHHHHhhc--cCC---CCCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC----------
Q psy12860        106 LKEWVRFTMNIQSMYK--RAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE----------  163 (198)
Q Consensus       106 ~g~~~~f~~kv~~v~K--~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~----------  163 (198)
                      .|++..|+.+++..+.  .+|   .++.....|+|.||||+|+|++.|+.. |+|.|-      |..+..          
T Consensus       454 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~  533 (691)
T cd01380         454 KGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAA  533 (691)
T ss_pred             CCChHHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhh
Confidence            5667899999998887  444   355556789999999999999999755 777651      111110          


Q ss_pred             --CC---C-----------CCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 --GN---Q-----------PSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 --~~---~-----------~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                        ..   .           ..+......||+.+|+.||..||..|.+-
T Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t  581 (691)
T cd01380         534 ELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNST  581 (691)
T ss_pred             cccccccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhcc
Confidence              00   0           01122456799999999999999999753

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=99.97  E-value=7.3e-32  Score=255.70  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=126.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+||++|+++||..||    ++|.+|||+|+.|+|.||++|+||++    ||+++|++.  -
T Consensus       371 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq----~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~  446 (677)
T cd01387         371 FEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQ----EEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCF  446 (677)
T ss_pred             cccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcC
Confidence            4899999999999999999999999999999855    99999999999999999999999976    688888773  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC-----------
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE-----------  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~-----------  163 (198)
                      +.+++.+|+.+++..+..+|   .++.....|+|.||||+|+|++.++.. |+|.|      +|..+..           
T Consensus       447 p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~  526 (677)
T cd01387         447 PQATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHA  526 (677)
T ss_pred             CCCchHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhh
Confidence            45667899999988776654   344556689999999999999999755 77765      2221110           


Q ss_pred             ---CC------CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        164 ---GN------QPSGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       164 ---~~------~~~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                         .+      ..++......||+.+|+.||..||..|.+
T Consensus       527 ~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~  566 (677)
T cd01387         527 AQRAPKRLGKSSSGTRLYKAHTVAAKFQQSLLDLVEKMER  566 (677)
T ss_pred             cccccccccCCCccccccCCCcHHHHHHHHHHHHHHHHhc
Confidence               00      00111223579999999999999999975

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=99.97  E-value=6.4e-32  Score=256.12  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=129.1

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----ccccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISEK--  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~~--  103 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|.+|||+|+.|+|.||++|+||++     ||+++|++.  
T Consensus       376 FE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq----~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~  451 (674)
T cd01378         376 FEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQ----EEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCA  451 (674)
T ss_pred             ccccccccHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHc
Confidence            4899999999999999999999999999999855    99999999999999999999999976     577788763  


Q ss_pred             cc-chhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC--------
Q psy12860        104 IN-LKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG--------  164 (198)
Q Consensus       104 ~~-~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~--------  164 (198)
                      -+ .+++.+|+.+++..++.+|   .++.....|+|.||||+|+|++.++.. |+|.|      +|..+...        
T Consensus       452 ~p~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~  531 (674)
T cd01378         452 TPHEGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPE  531 (674)
T ss_pred             CCCCCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcc
Confidence            33 5678899999999888764   234456689999999999999999755 77765      12222110        


Q ss_pred             CCCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        165 NQPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       165 ~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      .........+.||+.+|+.||..||..|.+-
T Consensus       532 ~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t  562 (674)
T cd01378         532 KSDADSKKRPTTAGFKIKTSANALVETLMKC  562 (674)
T ss_pred             cccccccCCCCcHHHHHHHHHHHHHHHHHcc
Confidence            0011112345799999999999999999864

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=99.97  E-value=1.6e-31  Score=253.18  Aligned_cols=162  Identities=18%  Similarity=0.188  Sum_probs=128.9

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|..|||+|.+|+|.||++||||++    ||+++|++.  -
T Consensus       372 FE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq----~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~  447 (671)
T cd01381         372 FENFDVNSFEQLCINFANENLQQFFVQHIFKLEQ----EEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKF  447 (671)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcC
Confidence            5899999999999999999999999999999855    99999999999999999999999976    788888873  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCCC-CCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------CC
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSKL-KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------GN  165 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~ri-~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~~  165 (198)
                      +.|++..|+.+++..++.++   .++. ....|+|.||||+|+|++.|+.. |+|.|      +|..+..        ..
T Consensus       448 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~  527 (671)
T cd01381         448 PKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQAD  527 (671)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhccc
Confidence            45667899999998887764   1222 34589999999999999999755 77766      1221111        00


Q ss_pred             --CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        166 --QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       166 --~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                        ..........||+.+|+.||..||..|.+-.
T Consensus       528 ~~~~~~~~~k~~tv~~~fk~qL~~L~~~L~~t~  560 (671)
T cd01381         528 VEMGAETRKKKPTLSSQFRRSLDLLMRTLSSCQ  560 (671)
T ss_pred             ccccccccccCCcHHHHHHHHHHHHHHHHhcCC
Confidence              0111233467999999999999999998643

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=99.97  E-value=1e-31  Score=253.75  Aligned_cols=153  Identities=20%  Similarity=0.194  Sum_probs=125.3

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|+++||..||    ++|.+|||+|+.|+|.||++||||++    ||+++|++.  -
T Consensus       383 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq----~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~  458 (653)
T cd01379         383 FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQ----QEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRF  458 (653)
T ss_pred             cccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcC
Confidence            4899999999999999999999999999999855    99999999999999999999999964    888888873  3


Q ss_pred             cchhHHHHHHHHHHhhccCC--CCCCCCCceEEEEecCccccCCCCccc-CcceeeecccCCCCCCCCcccCcceeEEec
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP--DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLILGKEKEGNQPSGLTMNAKSIVVEW  181 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p--~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLIlg~~~~~~~~~~l~~~~~Svv~~w  181 (198)
                      +.|++..|+.+++..++...  .++..+..|+|.||||+|+|++.|+.. |+|.|--.-.       .++.+..||+.+|
T Consensus       459 ~~~td~~~~~kl~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~-------~ll~~S~tv~~~f  531 (653)
T cd01379         459 PQATDQTLVEKFEDNLKSKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIV-------LLLRSSQTVASYF  531 (653)
T ss_pred             CCCCHHHHHHHHHHhcCCCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHH-------HHHHhCcHHHHHH
Confidence            45667899999988776432  244446689999999999999999766 7776621100       1111227999999


Q ss_pred             hHHHHHHHHHHHH
Q psy12860        182 KDELHDRMRQFQR  194 (198)
Q Consensus       182 k~sl~~lm~~l~r  194 (198)
                      +.+|..||..|.+
T Consensus       532 r~~l~~L~~~l~~  544 (653)
T cd01379         532 RYSLMDLLSKMVV  544 (653)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999986

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=99.96  E-value=3.9e-31  Score=252.06  Aligned_cols=162  Identities=19%  Similarity=0.235  Sum_probs=127.0

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|+++||..||    ++|.+|||+|+.|+|.||++|+||++    ||+++|++.  -
T Consensus       407 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq----~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~  482 (717)
T cd01382         407 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQ----ELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRL  482 (717)
T ss_pred             cccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcC
Confidence            4899999999999999999999999999999865    99999999999999999999999976    788888873  3


Q ss_pred             cchhHHHHHHHHHHhhccCCC---CC---C-------CCCceEEEEecCccccCCCCccc-Cccee------eecccCC-
Q psy12860        105 NLKEWVRFTMNIQSMYKRAPD---SK---L-------KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE-  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p~---~r---i-------~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~-  163 (198)
                      +.+++..|+.+++..++.++.   ++   +       ....|+|.||||+|+|++.++.. |+|.|      +|..+.. 
T Consensus       483 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~  562 (717)
T cd01382         483 PQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDK  562 (717)
T ss_pred             CCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchH
Confidence            456678999999988876531   11   1       12479999999999999999755 67665      2222111 


Q ss_pred             -----------CC--CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 -----------GN--QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 -----------~~--~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                                 .+  .+........||+.+|+.||+.||..|.+-.
T Consensus       563 ~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~  608 (717)
T cd01382         563 FLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTG  608 (717)
T ss_pred             HHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccC
Confidence                       00  0111223457999999999999999998643

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=99.96  E-value=4.1e-31  Score=251.15  Aligned_cols=161  Identities=20%  Similarity=0.282  Sum_probs=127.2

Q ss_pred             cccccc-cchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--
Q psy12860         31 IRNKQK-LVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--  103 (198)
Q Consensus        31 ~e~F~~-Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--  103 (198)
                      .|+|+. |+|||||||||||+||++|++++|..||    ++|..|||+|..|+|.||++||||++    ||+++|++.  
T Consensus       386 FE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq----~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~  461 (692)
T cd01385         386 FEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQ----EEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN  461 (692)
T ss_pred             cccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence            489999 9999999999999999999999999855    99999999999999999999999976    788888773  


Q ss_pred             ccchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC---------C
Q psy12860        104 INLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE---------G  164 (198)
Q Consensus       104 ~~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~---------~  164 (198)
                      -+.+++..|+.+++..++.++   .++.....|+|.||||+|+|++.++.. |+|.|      +|..+..         .
T Consensus       462 ~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~  541 (692)
T cd01385         462 FPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMD  541 (692)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccC
Confidence            345667899999999887764   234446689999999999999999755 67665      1211111         0


Q ss_pred             C---C-----CCC-cccCcceeEEechHHHHHHHHHHHHh
Q psy12860        165 N---Q-----PSG-LTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       165 ~---~-----~~~-l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      +   .     +.. -.....||+.+|+.+|..||..|.+-
T Consensus       542 ~~~~~~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t  581 (692)
T cd01385         542 PVAVFRWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKA  581 (692)
T ss_pred             cccccccccccccccCccCCcHHHHHHHHHHHHHHHHhcc
Confidence            0   0     000 01224699999999999999999863

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=99.96  E-value=9.5e-31  Score=248.77  Aligned_cols=162  Identities=20%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee----ccccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS----TIVGKISEK--  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde----gi~~~V~~~--  103 (198)
                      .|+|+.|||||||||||||+||++|+++||..||    ++|.+|||+|+.|+|. ||++||||++    ||+++|++.  
T Consensus       384 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq----~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~  459 (693)
T cd01377         384 FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQ----EEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECV  459 (693)
T ss_pred             ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhc
Confidence            4899999999999999999999999999999865    9999999999999995 9999999976    688888873  


Q ss_pred             ccchhHHHHHHHHHHhhccCCC-----CCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC--------
Q psy12860        104 INLKEWVRFTMNIQSMYKRAPD-----SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE--------  163 (198)
Q Consensus       104 ~~~g~~~~f~~kv~~v~K~~p~-----~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~--------  163 (198)
                      -+.|++..|+.+++..+..++.     ++.....|+|.||||+|+|++.+|.. |+|.|.      |..+..        
T Consensus       460 ~~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~  539 (693)
T cd01377         460 FPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFK  539 (693)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhh
Confidence            3456678999999988876531     22335589999999999999999755 777662      221111        


Q ss_pred             CC-----------CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 GN-----------QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 ~~-----------~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                      ..           ..........||+.+|+.||..||..|.+-.
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~  583 (693)
T cd01377         540 DYAEASGDGGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTN  583 (693)
T ss_pred             hhcccccccccccCCCCcCCccccHHHHHHHHHHHHHHHHhccC
Confidence            00           0001112347899999999999999998643

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>smart00242 MYSc Myosin

Probab=99.96  E-value=2.4e-30  Score=245.74  Aligned_cols=162  Identities=22%  Similarity=0.277  Sum_probs=130.0

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|.+|||+|+.|+|.||++||||++    ||+++|++.  -
T Consensus       379 FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq----~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~  454 (677)
T smart00242      379 FEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQ----EEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRF  454 (677)
T ss_pred             ccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcC
Confidence            4899999999999999999999999999999855    99999999999999999999999976    788888773  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CC-CCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------CC
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DS-KLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------GN  165 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~-ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~~  165 (198)
                      +.+++..|+.++++.+..++   .+ +.....|+|.||||+|.|++.++.. |+|.|      +|..+..        ..
T Consensus       455 ~~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~  534 (677)
T smart00242      455 PKATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSG  534 (677)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccc
Confidence            45678999999999887764   22 2345689999999999999999765 77766      2222211        00


Q ss_pred             -CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                       ..........||+.+|+.+|..||..|.+-.
T Consensus       535 ~~~~~~~~~~~tv~~~fk~~L~~L~~~l~~t~  566 (677)
T smart00242      535 ESNAGSKKRFRTVGSQFKESLNKLMDTLNSTN  566 (677)
T ss_pred             cccccccCCCCcHHHHHHHHHHHHHHHHhccC
Confidence             0112334678999999999999999998644

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd00124 MYSc Myosin motor domain

Probab=99.96  E-value=6.2e-30  Score=243.10  Aligned_cols=162  Identities=20%  Similarity=0.256  Sum_probs=129.1

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|++++|..||    ++|..|||+|+.|+|.||++||||++    ||+++|++.  -
T Consensus       372 FE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq----~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~  447 (679)
T cd00124         372 FEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQ----EEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLF  447 (679)
T ss_pred             cccCCCCCHHHHhcccchHHHHHHHHHHHHHHHH----HHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCC
Confidence            4899999999999999999999999999999855    99999999999999999999999976    677788763  3


Q ss_pred             cchhHHHHHHHHHHhhccCCC----CCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------C-
Q psy12860        105 NLKEWVRFTMNIQSMYKRAPD----SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------G-  164 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p~----~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~-  164 (198)
                      +.+++..|+.+++..++.++.    ++.....|+|.||||+|+|++.++.. |+|.|      +|..+..        . 
T Consensus       448 ~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~  527 (679)
T cd00124         448 PKGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESE  527 (679)
T ss_pred             CCCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccc
Confidence            456678999999998887641    23345689999999999999999755 77765      1221111        0 


Q ss_pred             -----------CCCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        165 -----------NQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       165 -----------~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                                 .........+.|++.+|+.+|..||..|.+-.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~  570 (679)
T cd00124         528 LSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTE  570 (679)
T ss_pred             cccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhcCC
Confidence                       00112234678999999999999999998643

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>KOG0163|consensus

Probab=99.94  E-value=1.4e-28  Score=228.57  Aligned_cols=162  Identities=19%  Similarity=0.280  Sum_probs=126.5

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|.+|||||||||||||+||++||..|++.||    +.|++||+++..|+|.||++||+|++    ||+.+|++.  -
T Consensus       461 FEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQ----ElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEakl  536 (1259)
T KOG0163|consen  461 FEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQ----ELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKL  536 (1259)
T ss_pred             ceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccC
Confidence            5999999999999999999999999999999754    99999999999999999999999987    677777763  3


Q ss_pred             cchhHHHHHHHHHHhhccC-----C-CCC------CC-CCceEEEEecCccccCCCCcccC-ccee--------------
Q psy12860        105 NLKEWVRFTMNIQSMYKRA-----P-DSK------LK-KGAVYLWIHNKDLQCKCPKIKLN-KPYL--------------  156 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~-----p-~~r------i~-rg~F~I~H~AgdV~Y~cp~L~~~-r~yL--------------  156 (198)
                      +..++.+|+..+|+.++.+     | +++      ++ ...|.|+||||.|+|.+..|.+. .|.|              
T Consensus       537 P~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~  616 (1259)
T KOG0163|consen  537 PKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNP  616 (1259)
T ss_pred             CCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccch
Confidence            4455789999999998876     2 122      22 23699999999999999987664 4444              


Q ss_pred             ----eecccCCC-CCCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        157 ----ILGKEKEG-NQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       157 ----Ilg~~~~~-~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                          +++++.+. .-+.+..+..-||+..|+.+|..||.+|..-+
T Consensus       617 ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stG  661 (1259)
T KOG0163|consen  617 LLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTG  661 (1259)
T ss_pred             HHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcC
Confidence                12221111 11123345567999999999999999997643

>KOG0162|consensus

Probab=99.94  E-value=6.7e-28  Score=223.58  Aligned_cols=160  Identities=12%  Similarity=0.128  Sum_probs=130.2

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----ccccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISEK--  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~~--  103 (198)
                      .|+|++|+||||||||.||+|||.|++.+++.||    +||.+|||.|..|+|+||..++||+|     ||++.+++.  
T Consensus       393 FEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQ----EeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A  468 (1106)
T KOG0162|consen  393 FEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQ----EEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA  468 (1106)
T ss_pred             eeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence            5899999999999999999999999999999855    99999999999999999999999998     788888772  


Q ss_pred             ----ccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC------C-
Q psy12860        104 ----INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG------N-  165 (198)
Q Consensus       104 ----~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~------~-  165 (198)
                          ...|.+..|+.+++..+..+|--..+...|.|.||||||+|+++||-. |+|.|      +|+.+...      | 
T Consensus       469 t~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe  548 (1106)
T KOG0162|consen  469 TAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE  548 (1106)
T ss_pred             HhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence                345557789999988888875333445689999999999999999855 77776      45543320      1 


Q ss_pred             -CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                       -.....-.|+|.+...+.|-+.|++.|.+
T Consensus       549 ~v~~dskrRP~Tag~kIkkqANdLVeTLmK  578 (1106)
T KOG0162|consen  549 NVDADSKRRPPTAGDKIKKQANDLVETLMK  578 (1106)
T ss_pred             hhcccccCCCCCchhhHHhhHHHHHHHHHh
Confidence             01123446789999999999999998875

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=99.94  E-value=1.6e-27  Score=228.38  Aligned_cols=122  Identities=20%  Similarity=0.145  Sum_probs=98.6

Q ss_pred             cccccc------cchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee---------
Q psy12860         31 IRNKQK------LVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS---------   94 (198)
Q Consensus        31 ~e~F~~------Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde---------   94 (198)
                      .|+|++      |||||||||||||+|||+|+++||..||    +||.+|||+|+++.+ .||++||||++         
T Consensus       383 FE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq----~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~  458 (767)
T cd01386         383 FQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPL----ERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVP  458 (767)
T ss_pred             ccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHhhcCCccccccCCCchhhHHHhhccccccccc
Confidence            488874      8999999999999999999999999865    999999999987655 68999999854         


Q ss_pred             ---------cccccccc--cccchhHHHHHHHHHHhhccCCC-----CCC----CCCceEEEEecC--ccccCCCCccc-
Q psy12860         95 ---------TIVGKISE--KINLKEWVRFTMNIQSMYKRAPD-----SKL----KKGAVYLWIHNK--DLQCKCPKIKL-  151 (198)
Q Consensus        95 ---------gi~~~V~~--~~~~g~~~~f~~kv~~v~K~~p~-----~ri----~rg~F~I~H~Ag--dV~Y~cp~L~~-  151 (198)
                               ||+++|++  +-+.+++.+|+.++++.++.++.     ++.    ....|+|.||||  +|+|++.|+.. 
T Consensus       459 ~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleK  538 (767)
T cd01386         459 AGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRR  538 (767)
T ss_pred             chhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHh
Confidence                     77778877  34556789999999988875421     111    245799999999  59999999755 


Q ss_pred             Cccee
Q psy12860        152 NKPYL  156 (198)
Q Consensus       152 ~r~yL  156 (198)
                      |+|.+
T Consensus       539 NkD~~  543 (767)
T cd01386         539 AKPNP  543 (767)
T ss_pred             cCCCC
Confidence            67644

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>KOG0160|consensus

Probab=99.93  E-value=4e-27  Score=224.82  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=126.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---ccccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISEK--IN  105 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~~--~~  105 (198)
                      .|.|++|+||||||||+||+|||+|++|||++||    ++|..|||+|+.|+|.||++|+++++   |+.++++++  -+
T Consensus       378 FEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eq----eey~~e~i~Ws~ief~dNq~~~~lie~~~Gi~~Llde~c~lp  453 (862)
T KOG0160|consen  378 FESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQ----EEYTKEEIDWSGIEFRDNQECLDLIEKPLGILALLDEECMLP  453 (862)
T ss_pred             ccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHH----HHHHhhccccccccCcCccchhhhhccccchhhccchhccCC
Confidence            4889999999999999999999999999999965    99999999999999999999999987   477777663  45


Q ss_pred             chhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCc-ccCcceeeecc------cCCCC--C--C---C
Q psy12860        106 LKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKI-KLNKPYLILGK------EKEGN--Q--P---S  168 (198)
Q Consensus       106 ~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L-~~~r~yLIlg~------~~~~~--~--~---~  168 (198)
                      .+++.++..++...+..++   .++..+..|.|.||||||+|++.+| .+++||+....      ++...  .  +   .
T Consensus       454 ~~t~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~  533 (862)
T KOG0160|consen  454 KGTDETLAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRA  533 (862)
T ss_pred             CCCcchHHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhc
Confidence            5566777777777776553   5778888999999999999999985 55899984332      11110  0  0   0


Q ss_pred             --CcccCcceeEEechHHHHHHHHHHH
Q psy12860        169 --GLTMNAKSIVVEWKDELHDRMRQFQ  193 (198)
Q Consensus       169 --~l~~~~~Svv~~wk~sl~~lm~~l~  193 (198)
                        .......|++.+|+.++..||..+.
T Consensus       534 ~~~~~~~~~tv~s~fk~~l~~Lm~~l~  560 (862)
T KOG0160|consen  534 DSSAKSKRSTVGSQFKLQLISLMETLN  560 (862)
T ss_pred             chhhhhhcccHHHHHHHHHHHHHHHhc
Confidence              0122346999999999999999875

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.92  E-value=1.1e-26  Score=221.08  Aligned_cols=161  Identities=21%  Similarity=0.285  Sum_probs=118.7

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee----ccccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS----TIVGKISEK--  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde----gi~~~V~~~--  103 (198)
                      .|+|..|+|||||||||||+||++|++++|..|+    ++|.+|||+|..|+| .||++|+||++    ||+++|++.  
T Consensus       374 FE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~----~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~  449 (689)
T PF00063_consen  374 FENFSVNSFEQLCINYANERLQQFFNQHIFKSEQ----EEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECL  449 (689)
T ss_dssp             B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCT
T ss_pred             cccccccccccceeeeccccccceeeeecccccc----cccccccccccccccccCchhhhhhhccccCCHHHHhhhhhh
Confidence            4899999999999999999999999999999855    999999999999999 99999999976    588888763  


Q ss_pred             ccchhHHHHHHHHHHhh-ccCC---CCC----CCCCceEEEEecCccccCCCCccc-Cccee------eecc-cCC----
Q psy12860        104 INLKEWVRFTMNIQSMY-KRAP---DSK----LKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGK-EKE----  163 (198)
Q Consensus       104 ~~~g~~~~f~~kv~~v~-K~~p---~~r----i~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~-~~~----  163 (198)
                      -+.+++..|+.++...+ ..++   .++    .....|+|.||||+|.|++.++.. |+|.|      +|.. .+.    
T Consensus       450 ~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~  529 (689)
T PF00063_consen  450 LPRGSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSS  529 (689)
T ss_dssp             STTS-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHH
T ss_pred             cccchhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCccccc
Confidence            34556789999999888 5543   232    346689999999999999999655 55554      1111 000    


Q ss_pred             -----------------------C--CCCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 -----------------------G--NQPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 -----------------------~--~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                                             +  ...........|++.+|+.+|..||..|.+-
T Consensus       530 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t  586 (689)
T PF00063_consen  530 LFSSEATATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRST  586 (689)
T ss_dssp             HTHSHHH---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhhhhc
Confidence                                   0  0011223345899999999999999999753

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0161|consensus

Probab=99.91  E-value=3e-26  Score=232.16  Aligned_cols=160  Identities=20%  Similarity=0.259  Sum_probs=121.6

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee---cccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS---TIVGKISE--KI  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde---gi~~~V~~--~~  104 (198)
                      .|+|+.||||||||||+||+|||+||+|+|.+||    ++|.+|||.|++|+|+ |=+|||||++   ||+++|++  .-
T Consensus       458 FEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEq----eeY~~EgIew~fidfG~Dlq~~idLIEkp~Gi~slLdEEc~~  533 (1930)
T KOG0161|consen  458 FEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQ----EEYQREGIEWDFIDFGLDLQPTIDLIEKPMGILSLLDEECVV  533 (1930)
T ss_pred             ccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhH----HHHHHhCCceeeeccccchhhhHHHHhchhhHHHHHHHHHhc
Confidence            5899999999999999999999999999999965    9999999999999997 5599999987   67777776  34


Q ss_pred             cchhHHHHHHHHHHhh-ccCCC---CC--CCCCceEEEEecCccccCCCC-cccCccee-------eecccCC-------
Q psy12860        105 NLKEWVRFTMNIQSMY-KRAPD---SK--LKKGAVYLWIHNKDLQCKCPK-IKLNKPYL-------ILGKEKE-------  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~-K~~p~---~r--i~rg~F~I~H~AgdV~Y~cp~-L~~~r~yL-------Ilg~~~~-------  163 (198)
                      +.+++.+|+.++...| +.+|.   |+  -....|.|.||||+|.|++++ |..|++-|       +..+.+.       
T Consensus       534 PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~  613 (1930)
T KOG0161|consen  534 PKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQ  613 (1930)
T ss_pred             CCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhh
Confidence            5555799999988888 44442   22  123479999999999999999 44566655       1112111       


Q ss_pred             ---C-C-----CC---CCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        164 ---G-N-----QP---SGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       164 ---~-~-----~~---~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                         + +     +.   .+-.....||+..++.+|..||..|.+
T Consensus       614 ~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~  656 (1930)
T KOG0161|consen  614 DYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRS  656 (1930)
T ss_pred             hhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhcc
Confidence               0 0     00   011123368999999999999998864

>cd03578 NTR_netrin-4_like NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins

Probab=99.88  E-value=6.2e-24  Score=158.78  Aligned_cols=102  Identities=24%  Similarity=0.411  Sum_probs=95.2

Q ss_pred             ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEe-cCccccCCCCcccCcceeeecccCCCCCCCC
Q psy12860         91 EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIH-NKDLQCKCPKIKLNKPYLILGKEKEGNQPSG  169 (198)
Q Consensus        91 dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~-AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~  169 (198)
                      |++||+++.|.+++..|+|+.|+++|.++||++ ..++++|+.++|+. ..++.|.||.|.+|++|||||.+++  .+++
T Consensus         8 dy~Yav~a~V~~~~~~g~~~~~~V~V~~V~K~~-~~~i~RG~~~L~v~~~~~~~C~CPkL~~g~~YLIlG~ed~--~~~r   84 (111)
T cd03578           8 KYAYVIKIKVLSAHDKGTHAEVNVKIKKVLKST-KLKLSRGKRTLYPESWTSRGCTCPILNPGLEYLVAGHEDV--RTGR   84 (111)
T ss_pred             CCCEEEEEEEEEEEecCCeEEEEEEEEEEEecC-CCccccCceEEEeeccccccCcCCcccCCCEEEEEccCCC--CCCc
Confidence            456999999999999999999999999999998 77899999999999 6999999999999999999999666  5789


Q ss_pred             cccCcceeEEechHHHHHHHHHHHHh
Q psy12860        170 LTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       170 l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      +++++.|+|++|+++|.++|++|-++
T Consensus        85 L~i~~~S~V~~Wrd~~~rr~~~~~~~  110 (111)
T cd03578          85 LIVNMKSFVQHWKPSLGRKVMEILKR  110 (111)
T ss_pred             EEECCccEEEEhhHHHHHHHHHHHcc
Confidence            99999999999999999999999876

Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. Netrin-4 is a basement membrane component that is important in neural, kidney and vascular development. It may also be involved in regulating the outgrowth and shape of epithelial cells during lung branching morphogenesis.

>cd03579 NTR_netrin-1_like NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C

Probab=99.78  E-value=3.4e-20  Score=140.25  Aligned_cols=108  Identities=40%  Similarity=0.870  Sum_probs=96.2

Q ss_pred             ccccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCC
Q psy12860         87 GWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQ  166 (198)
Q Consensus        87 ~~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~  166 (198)
                      ..|-. |||+.+.|.+....++|..|+++|.++||.+ ...+++|+..+|..+.+..|.||.|.+|++|||||.+++.+.
T Consensus         3 ~~C~~-dyvik~~V~s~~~~~~~~~~~v~V~~V~K~g-~~~i~~~~~~l~v~~~~~~C~Cp~l~~g~~YLImG~~~~~~~   80 (115)
T cd03579           3 KYCKK-DYAVQAQVLSRETAGEWAKFTVNVQTVYKRG-TSRLRRGDQPLWVPRKDLACKCPKLKVGKSYLLLGKDEDSPE   80 (115)
T ss_pred             ccccc-CeEEEEEEEEEEecCCEEEEEEEEEEEEecC-CccccccceEEEEecCCCcCCCCCccCCCEEEEEeccCCCCC
Confidence            45665 9999999999877788999999999999988 446778888888888899999999999999999999776545


Q ss_pred             CCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        167 PSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       167 ~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                      +++++++++|+|.+|++.|+++|++|+|+|
T Consensus        81 ~~~l~ld~~s~V~~W~~~w~rrl~~~~~~~  110 (115)
T cd03579          81 RGGLILDKRSLVIEWRDEWARRLRRFQRRE  110 (115)
T ss_pred             CCeEEECCCeEEEECCHHHHHHHHHHHhHH
Confidence            789999999999999999999999999987

elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. These proteins may be chemoattractive to some neurons and chemorepellant for others. In the case of netrin-1, attraction and repulsion responses are mediated by the DCC and UNC-5 receptor families. The biological activities of C. elegans UNC-6, which may either attract or repel migrating cells or axons, are mediated by its different domains. The C-terminal NTR domain of UNC-6 has been shown to inhibit axon branching activity.

>KOG4229|consensus

Probab=99.74  E-value=6.3e-19  Score=172.32  Aligned_cols=122  Identities=23%  Similarity=0.273  Sum_probs=101.4

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||+|||||||.||.+|++|||.+||    +||..|||+|..|.|.||+.|+|++.    +++.+|++.  -
T Consensus       437 fE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq----~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~f  512 (1062)
T KOG4229|consen  437 FENFERNSFEQLCINLANEQLQYYFNQHIFALEQ----EEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRF  512 (1062)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcC
Confidence            3899999999999999999999999999999965    99999999999999999999999864    788888763  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCC-CCCCceEEEEecCccccCCCCc-ccCccee
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSK-LKKGAVYLWIHNKDLQCKCPKI-KLNKPYL  156 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~r-i~rg~F~I~H~AgdV~Y~cp~L-~~~r~yL  156 (198)
                      +.+++.+++.+++..+..+.   .++ ...+.|+|.||||-|.|+.-++ ..|+|++
T Consensus       513 P~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~  569 (1062)
T KOG4229|consen  513 PKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTV  569 (1062)
T ss_pred             CchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhh
Confidence            55666788888887777541   222 2355899999999999998875 4477765

>cd03581 NTR_Sfrp3_like NTR domain, Secreted frizzled-related protein (Sfrp) 3-like subfamily; composed of proteins similar to human Sfrp3 and Sfrp4

Probab=99.72  E-value=9.8e-19  Score=131.68  Aligned_cols=98  Identities=23%  Similarity=0.474  Sum_probs=87.0

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcc
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLT  171 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~  171 (198)
                      +|||+.+.|.+.+..++|..|+++|.++|+.+ ...+.+++..+|..   .+|.||.+.+|++|||||.+++  ..++++
T Consensus         8 ~dYa~kv~V~~~~~~~~~~~y~v~V~~V~K~g-~~~i~~~~~~l~~~---~~C~cp~l~~gk~YLImG~~~~--~~~~~~   81 (111)
T cd03581           8 YNYVIRAKVKEVKRGCHEVTAVVEVKEILKSS-LVNIPRDTVTLYTN---SGCLCPPLTPNEEYIIMGYEDE--ERSRLL   81 (111)
T ss_pred             CCEEEEEEEEEEEecCCEEEEEEEEEEEEecC-CCccCCceEEEEEc---CCCCCccccCCCEEEEEecCCC--CcceEE
Confidence            57999999999888899999999999999988 44677777667755   5999999999999999999754  357899


Q ss_pred             cCcceeEEechHHHHHHHHHHHHh
Q psy12860        172 MNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       172 ~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      ++++|+|.+|++.|.++|++|+|+
T Consensus        82 ld~~S~Ve~W~~~~~rr~~~~~~~  105 (111)
T cd03581          82 LVEGSLAEKWKDRLGKKVKRWDQK  105 (111)
T ss_pred             eCCceEEEEhhHHHHHHHHHHHHH
Confidence            999999999999999999999997

Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp3 may suppress the growth and invasiveness of androgen-independent prostate cancer cells.

>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide

Probab=99.71  E-value=1.7e-18  Score=132.53  Aligned_cols=105  Identities=14%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             cccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCC
Q psy12860         88 WRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP  167 (198)
Q Consensus        88 ~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~  167 (198)
                      .|-. ||||.+.|.+++..++|+.|+++|.++||.+ ...++++++.+|+...++.|.||.|..|+.|||||..++. + 
T Consensus        20 yC~s-dfaI~g~V~~~~~~~~~~~~tv~i~~vyK~g-~l~l~~~~~~l~V~~~~~~~~CP~lr~g~~YliMG~v~~~-g-   95 (124)
T cd03576          20 YCSS-EFVITGTVISMTRGPGSLHATVSIIKLYKEG-RLAITQAGKTMSVKITVVCKQCPLLRRGLNYILMGQVDEE-G-   95 (124)
T ss_pred             cccC-CceEEEEEEEEEEcCCeEEEEEEeeeeeecC-CcccCcCCceEEEEecccccCCCCcccCCEEEEEeecCCC-C-
Confidence            4444 8999999999887778999999999999987 6778889889999999999999999999999999996543 2 


Q ss_pred             CCcccCcceeEEechHHHHHHHHHHHHhcC
Q psy12860        168 SGLTMNAKSIVVEWKDELHDRMRQFQRRGC  197 (198)
Q Consensus       168 ~~l~~~~~Svv~~wk~sl~~lm~~l~r~~~  197 (198)
                       +-++++.|+|.+|++.|+++|++++++.|
T Consensus        96 -r~~i~p~SfV~~~k~~~~r~l~~~~~~~C  124 (124)
T cd03576          96 -RGVIPPESFVMLYKTKHQKLLAALSNKKC  124 (124)
T ss_pred             -CcccCCccEEEEecchhHHHHHHhhcCCC
Confidence             23899999999999999999999999887

They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.

>KOG3512|consensus

Probab=99.70  E-value=1.2e-17  Score=149.68  Aligned_cols=102  Identities=30%  Similarity=0.724  Sum_probs=92.6

Q ss_pred             eecccccc-cccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcc
Q psy12860         93 KSTIVGKI-SEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLT  171 (198)
Q Consensus        93 degi~~~V-~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~  171 (198)
                      ||++...| ..++..+.|..|.++|.++|+++ ..+++||+..+|+.++++.|.||.|++++.|||||...+.+ .++|+
T Consensus       486 Dyav~~~v~~~~e~~~~~~k~~i~v~avfkrg-t~~~~rg~~~lwv~~~~i~c~cpkl~~~r~ylllg~~~~~~-~~gl~  563 (592)
T KOG3512|consen  486 DYAVQLDVDASREATGLWCKYLINVAAVFKRG-TERARRGSSSLWVPAGDIACKCPKLKPGRRYLLLGGGPGAA-AGGLI  563 (592)
T ss_pred             ccceeeEeeccccccCceeeeeehHHHHHhcc-chhhccCcceeeecCCCceecCCccccCceEEEecCCCCCC-CCcee
Confidence            77777766 45788888999999999999998 78899999999999999999999999999999999866543 44899


Q ss_pred             cCcceeEEechHHHHHHHHHHHHhc
Q psy12860        172 MNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       172 ~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                      +++.|||++|+|.|.++|++|||||
T Consensus       564 ~~~~s~v~~w~d~w~~r~~rfq~r~  588 (592)
T KOG3512|consen  564 AAPSSVVLEWRDAWTRRLRRFQRRE  588 (592)
T ss_pred             EcCccEEEEchHHHHHHHHHHHHhh
Confidence            9999999999999999999999998

>smart00643 C345C Netrin C-terminal Domain

Probab=99.45  E-value=5.6e-15  Score=111.00  Aligned_cols=106  Identities=24%  Similarity=0.369  Sum_probs=86.2

Q ss_pred             ccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCC-cccCcceeeecccCCC-
Q psy12860         88 WRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPK-IKLNKPYLILGKEKEG-  164 (198)
Q Consensus        88 ~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~-L~~~r~yLIlg~~~~~-  164 (198)
                      .|. |+|||+.+.|.+....+++..|+++|.++||.+ ...+.++.-.+|.+.++..|.||. +.+|++|||||..... 
T Consensus         4 ~C~~~~dyv~k~~V~s~~~~~~~~~~~~~v~~v~K~g-~~~~~~~~~~~~~~~~~~~C~cp~~l~~g~~YLImG~~~~~~   82 (114)
T smart00643        4 ACKSDVDYVYKVKVLSVEEEGGFDKYTVKILEVIKSG-TDELVRGKGKLRLFISRASCRCPLLLKKGKSYLIMGKSGDLW   82 (114)
T ss_pred             cccCCCCEEEEEEEEEEEecCCeEEEEEEEEEEEEec-CccccccCCcEEEEeeccccCCccccCCCCEEEEecCCCCcc
Confidence            455 457999999998776677889999999999987 444555445688898888999998 5699999999975431 


Q ss_pred             --CCCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        165 --NQPSGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       165 --~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                        .+.++++++++|+|.+|++.+.+.+++|++
T Consensus        83 ~~~~~~~~~l~~~s~v~~W~~~~~~~~~~~~~  114 (114)
T smart00643       83 DVKGRGQYVLGKNSWVEEWPTEEECRLRRLQK  114 (114)
T ss_pred             ccCCccEEEeCCCeEEEECCChhhcchhhcCC
Confidence              124689999999999999999999998864

>PF01759 NTR: UNC-6/NTR/C345C module; InterPro: IPR018933 The netrin (NTR) module is an about 130-residue domain found in the C-terminal parts of netrins, complement proteins C3, C4, and C5, secreted frizzled-related proteins, and type I procollagen C-proteinase enhancer proteins (PCOLCEs), as well as in the N-terminal parts of tissue inhibitors of metalloproteinases (TIMPs)

Probab=99.39  E-value=2.4e-15  Score=112.26  Aligned_cols=105  Identities=25%  Similarity=0.596  Sum_probs=85.3

Q ss_pred             ccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc-CcceeeecccCC--CC
Q psy12860         89 RFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLILGKEKE--GN  165 (198)
Q Consensus        89 cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLIlg~~~~--~~  165 (198)
                      |-. |||+.+.|.+....+++..|++.|..+||.+...++.++...+|...++..|.||.|.+ |.+|||||....  +.
T Consensus         4 C~~-dyv~k~~V~~~~~~~~~~~~~v~v~~v~K~g~~~~~~~~~~~~~~~~~~~~C~Cp~l~~~g~~YLImG~~~~~~~~   82 (111)
T PF01759_consen    4 CRS-DYVIKVRVLSVEEEGGFTRYTVRVKEVYKQGNDDRIRRGRRRLFVKRNDCRCPCPDLKVIGKEYLIMGKDGDTDGK   82 (111)
T ss_dssp             SST-CEEEEEEEEEEEEESTEEEEEEEEEEEEEETTSSSTTSTSEEEEEEEGS-S-GGHHHHTTTCEEEEEEEGGGECST
T ss_pred             chh-CEEEEEEEEEEEecCCeEEEEEEEEEEEEcCCcccccCCceEEEEEcccccccCcccccCCCEEEEEEeecccCCC
Confidence            445 89999999998777788999999999999884346677887788888889999999999 999999997532  33


Q ss_pred             CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        166 QPSGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       166 ~~~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                      ..+++++++.|+|.+|++.+.+.+++|+|
T Consensus        83 ~~~~~~l~~~s~v~~W~~~~~~~~~~~~~  111 (111)
T PF01759_consen   83 DRGRYVLDSDSFVEPWPPKWNRRLRRLRR  111 (111)
T ss_dssp             TSEEEE-STTSEEEEE-CTGGGGSTCTHH
T ss_pred             CccEEEECCCcEEEECCchhhhhhHHhcC
Confidence            46689999999999999999999988875

The proteins harboring the NTR domain fulfill diverse biological roles ranging from axon guidance, regulation of Wnt signalling, to the control of the activity of metalloproteinases. The NTR domain can be found associated to other domains such as CUB, WAP, Kazal, Kunitz, Ig-like, laminin N-terminal, laminin-type EGF or frizzled. The NTR domain is implicated in inhibition of zinc metalloproteinases of the metzincin family [, ]. The NTR module is a basic domain containing six conserved cysteines, which are likely to form internal disulphide bonds, and several conserved blocks of hydrophobic residues (including an YLLLG-like motif). The NTR module consists of a beta-barrel with two terminal alpha-helices packed side by side against the face of the beta-barrel (see P16035 from SWISSPROT) []. This entry includes most netrin modules, but excludes those found in TIMPs.; PDB: 2B39_B 3HS0_C 3PRX_B 3PVM_D 3HRZ_C 3FRP_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D ....

>cd03523 NTR_like NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others

Probab=99.05  E-value=2.8e-11  Score=89.49  Aligned_cols=94  Identities=23%  Similarity=0.416  Sum_probs=70.5

Q ss_pred             eecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCccc
Q psy12860         93 KSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTM  172 (198)
Q Consensus        93 degi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~~  172 (198)
                      |||+.+.|.+....+++..|+++|..+||.+ ...+..++...+...+...|.||.|.+|++|||||...+.  ++++.+
T Consensus         7 dyvi~~~V~~~~~~~~~~~~~v~v~~v~K~g-~~~~~~~~~~~~~~~~~~~~c~~~l~~g~~YLImG~~~~~--~~~~~l   83 (105)
T cd03523           7 DYVVRAKIKEIKEENDDVKYEVKIIKIYKTG-KAKADKADLRFYYTAPACCPCHPILNPGREYLIMGKEEDS--QGGLVL   83 (105)
T ss_pred             cEEEEEEEEEEEecCCcEEEEEEEEEEecCC-CcccccccEEEEEeCCcccccCcccCCCceEEEEEeeecc--cCcEEE
Confidence            7999999988766667888999999999987 3333344434444445444446999999999999986542  468999


Q ss_pred             CcceeEEechH---HHHHHH
Q psy12860        173 NAKSIVVEWKD---ELHDRM  189 (198)
Q Consensus       173 ~~~Svv~~wk~---sl~~lm  189 (198)
                      ++.|+|.+|++   .|.++|
T Consensus        84 ~~~s~v~~W~~~~~~~~~~l  103 (105)
T cd03523          84 DPLSFVEPWSPLSLRQDRRL  103 (105)
T ss_pred             cCccEEEECCcccHHHHHhh
Confidence            99999999999   455444

In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.

>cd03582 NTR_complement_C5 NTR/C345C domain, complement C5 subfamily; The NTR domain found in complement C5 is also known as C345C because it occurs at the C-terminus of complement C3, C4 and C5

Probab=99.01  E-value=5.9e-11  Score=93.82  Aligned_cols=95  Identities=15%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             cccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCC
Q psy12860         87 GWRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGN  165 (198)
Q Consensus        87 ~~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~  165 (198)
                      ..|. .+|||+.+.|.+....++|..|+++|.+|+|.+ ...+.+|+  .+.|..+..|.||.|.+|+.|||||.+..-.
T Consensus        25 ~AC~~~vDYaykv~V~~~~~~~~~~~y~~~I~~V~K~g-~d~~~~g~--~r~f~~~~~Cr~~~l~~gk~YLImG~~~~~~  101 (150)
T cd03582          25 ETCKEQIAYAYKVMIKSSAAEGDFVTYKATVLDVLKNG-QAELEKDS--EVTLVKKATCTSVELQEGQQYLIMGKEALKI  101 (150)
T ss_pred             hccCCCCCEEEEEEEEEEEecCCeEEEEEEEEEeEecC-CccccCCC--eEEEeecCCCCCCcccCCCEEEEeeCCCCcc
Confidence            4555 468999999999888888999999999999998 44677776  4456888999999999999999999864411


Q ss_pred             -----CCCCcccCcceeEEechHH
Q psy12860        166 -----QPSGLTMNAKSIVVEWKDE  184 (198)
Q Consensus       166 -----~~~~l~~~~~Svv~~wk~s  184 (198)
                           ...+++++.+|++..|...
T Consensus       102 ~~~~~~~~~Y~L~~~TWvE~WP~~  125 (150)
T cd03582         102 RLNRSFRYRYPLDSEAWIEWWPTD  125 (150)
T ss_pred             ccCCCceeEEEcCCceeEEECCCh
Confidence                 1246899999999999874

Complement C5 is activated by C5 convertase, which itself is a complex between C3b and C3 convertase. The small cleavage fragment, C5a, is the most important small peptide mediator of inflammation, and the larger active fragment, C5b, initiates late events of complement activation. The NTR/C345C domain is important in the function of C5 as it interacts with enzymes that convert C5 to the active form, C5b. The domain has also been found to bind to complement components C6 and C7, and may specifically interact with their factor I modules.

>cd03574 NTR_complement_C345C NTR/C345C domain; The NTR domains that are found in the C-termini of complement C3, C4 and C5, are also called C345C domains

Probab=98.96  E-value=1.3e-10  Score=91.32  Aligned_cols=95  Identities=15%  Similarity=0.258  Sum_probs=72.5

Q ss_pred             ccccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCC-ceEEEEecCccccCC-CCcccCcceeeecccCCC
Q psy12860         87 GWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKG-AVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKEG  164 (198)
Q Consensus        87 ~~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg-~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~~  164 (198)
                      ..|-.+|||+.+.|.+....++|..|+++|.+|+|.+ ...+.++ .  +.++.....|.| +.|.+|++|||||.+...
T Consensus        18 kaC~~~DYa~kv~V~~~~~~~~~~~~~~~v~~V~K~g-~~~~~~~~~--~~~~~~~~~C~c~~~l~~g~~YLImG~~~~~   94 (147)
T cd03574          18 KACTSVDYVYKVKVTSVEEEAGFRIYKARVTEVIKSG-SDDVQNGNA--RRTFIIRESCDCPLRLKEGRHYLIMGSDGAF   94 (147)
T ss_pred             ccccccceEEEEEEEEEEecCCeEEEEEEEEEEEecc-cccccCCCc--eEEEEccCCccchhcCCCCCEEEEeccCcCc
Confidence            4555468999999999888888999999999999988 3344444 3  233333349999 888999999999985442


Q ss_pred             C------CCCCcccCcceeEEechHH
Q psy12860        165 N------QPSGLTMNAKSIVVEWKDE  184 (198)
Q Consensus       165 ~------~~~~l~~~~~Svv~~wk~s  184 (198)
                      .      .+.+++++.+|+|.+|++.
T Consensus        95 ~~~~~~~~~~~yvl~~~t~Ve~Wp~~  120 (147)
T cd03574          95 YDDRNGEDRYQYVLDSNTWVEEWPTD  120 (147)
T ss_pred             ccccCCCcceEEEeCCCcEEEECCCh
Confidence            1      2347999999999999874

In C5, the domain interacts with various partners during the formation of the membrane attack complex, a fundamental process in the mammalian defense against infection. It's role in component C3 and C4 is not well understood.

>cd03584 NTR_complement_C4 NTR/C345C domain, complement C4 subfamily; The NTR domain found in complement C4 is also known as the C345C domain because it occurs at the C-terminus of complement C3, C4 and C5

Probab=98.87  E-value=3.2e-10  Score=89.95  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=78.0

Q ss_pred             cccc--ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCC
Q psy12860         87 GWRF--EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG  164 (198)
Q Consensus        87 ~~ci--dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~  164 (198)
                      ..|.  ..|||+.+.|++....++|..|+++|.+|+|.+....+++|.  .++|..+..|.| .|.+|+.|||||.+...
T Consensus        27 ~AC~~~~~DYaykv~V~~~~~~~~~~~y~~~I~~ViK~g~d~~~~~g~--~r~f~~~~~Cr~-~l~~gk~YLImG~~~~~  103 (153)
T cd03584          27 FACYSPRVDYAYVVKVLNISEKSNFELYETSITDVLQTTGDVSVKPEE--TRVFLKRLSCKL-ELKKGKEYLIMGKDGAT  103 (153)
T ss_pred             HhhCCCCCCEEEEEEEEEEEecCCEEEEEEEEEEEEEcCCcCcccCCC--eEEEEecCCccC-cccCCCEEEEEcCCCCC
Confidence            4565  578999999999888888999999999999998333666776  455688899999 88899999999986542


Q ss_pred             C---CCCCcccCcceeEEechHHHH
Q psy12860        165 N---QPSGLTMNAKSIVVEWKDELH  186 (198)
Q Consensus       165 ~---~~~~l~~~~~Svv~~wk~sl~  186 (198)
                      .   +..+++++.+|+|..|...-.
T Consensus       104 ~~~~~~~~Y~L~~~tWvE~wP~~~~  128 (153)
T cd03584         104 SDSNGHMQYLLDSKTWVEKIPSEKR  128 (153)
T ss_pred             cCcCCcEEEEeCCCceEEECCChHH
Confidence            1   234789999999999987433

Complement C4 is a key player in the activation of the component classical pathway. C4 is cleaved by activated C1 to yield C4a anaphylatoxin, and the larger fragment C4b, an essential component of the C3- and C5-convertase enzymes. C4b binds covalently to the surface of pathogens through a reactive thioester. The role of the NTR/C345C domain in C4 (C4b) is unclear.

>cd03577 NTR_TIMP_like NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling

Probab=98.30  E-value=6.2e-08  Score=72.85  Aligned_cols=84  Identities=25%  Similarity=0.367  Sum_probs=67.7

Q ss_pred             eeecccccccccccch--hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCC
Q psy12860         92 FKSTIVGKISEKINLK--EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSG  169 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g--~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~  169 (198)
                      -|+|+.+.|.+....+  ++.+|++++.++||.++   ..++...|+..+.+..|.||.+. |++|||+|+...    ++
T Consensus        15 sD~Vi~~kV~~~~~~~~~~~~~~~~~v~~v~K~~~---~~~~~~~v~t~~~~~~Cg~~~~~-~~~YLI~G~~~~----~~   86 (116)
T cd03577          15 ADFVIKVKVLKKKLDGAGLNIRYTIEIKKVYKGSE---KSLLPITIYTPSDDSACGIPLLE-GKEYLIAGKVED----GA   86 (116)
T ss_pred             CCEEEEEEEeceeeecCCCeEEEEEEEEEEecCCc---cCCCceEEEecCcccCcCcCcCC-CCEEEEEEEcCC----Cc
Confidence            3789999998764433  57788889999999762   34556778888888899999988 999999998543    58


Q ss_pred             cccCcceeEEechH
Q psy12860        170 LTMNAKSIVVEWKD  183 (198)
Q Consensus       170 l~~~~~Svv~~wk~  183 (198)
                      +.++.-|.+.+|++
T Consensus        87 l~~~~Cs~v~~W~~  100 (116)
T cd03577          87 LHTTLCDGVAPWDD  100 (116)
T ss_pred             EEEEeCCCEEEhHH
Confidence            89999999999987

They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. This group contains domains similar to the TIMP NTR domain, which binds MMPs. Members of this group may or may not function as MMP inhibitors.

>cd03580 NTR_Sfrp1_like NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5

Probab=98.26  E-value=3e-07  Score=70.64  Aligned_cols=95  Identities=25%  Similarity=0.575  Sum_probs=70.4

Q ss_pred             eecccccccccccchhHHHHHHHH-HHhhccCCC--CCCCCCceEEEEecCccccCCCCcc-cCcceeeecccCCCCCCC
Q psy12860         93 KSTIVGKISEKINLKEWVRFTMNI-QSMYKRAPD--SKLKKGAVYLWIHNKDLQCKCPKIK-LNKPYLILGKEKEGNQPS  168 (198)
Q Consensus        93 degi~~~V~~~~~~g~~~~f~~kv-~~v~K~~p~--~ri~rg~F~I~H~AgdV~Y~cp~L~-~~r~yLIlg~~~~~~~~~  168 (198)
                      |||+.+.|.+....++|..|+... ..+||.++-  ..+++  ..+|... ++.|.||.+. .+..|||||...+    +
T Consensus        25 DFvik~kV~~~~~~~g~~~~~~~~~~~v~K~g~l~~~~~~~--~~l~l~~-~~~C~C~~l~~~~~~YLImG~~~~----g   97 (126)
T cd03580          25 DFALKVKIKEISYENGDRKVIGEKKKEILKQGPLKKKDLKK--LVLWLKN-GANCPCPQLDNLNGVYLVMGRKVD----G   97 (126)
T ss_pred             cEEEEEEEEEEeecCCcEEEEEeeeEEEEecCCccccCcce--EEEEecC-CCCCCCccccCCCceEEEEEEEeC----C
Confidence            899999998875555667777655 788998731  12333  4566665 8899999997 8999999997633    3


Q ss_pred             CcccCcceeEEech---HHHHHHHHHHHHhcC
Q psy12860        169 GLTMNAKSIVVEWK---DELHDRMRQFQRRGC  197 (198)
Q Consensus       169 ~l~~~~~Svv~~wk---~sl~~lm~~l~r~~~  197 (198)
                      .+++   |.+.+|.   ..+.+-|+.+..-.|
T Consensus        98 ~~~v---~~i~~W~k~~~~~k~a~r~~k~~~C  126 (126)
T cd03580          98 KLLL---TSIYKWQKKNKEFKRAVRKWKKHKC  126 (126)
T ss_pred             EEEE---EEEeehhcCCHHHHHHHHHhhcCCC
Confidence            5666   9999995   348888888876555

Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp1 has been found frequently to be downregulated in breast cancer and is associated with disease progression and poor prognosis.

>cd03583 NTR_complement_C3 NTR/C345C domain, complement C3 subfamily; The NTR domain found in complement C3 is also known as the C345C domain because it occurs at the C-terminus of complement C3, C4 and C5

Probab=98.24  E-value=2.1e-07  Score=73.55  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=73.1

Q ss_pred             Ccccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCC-cccCcceeeecccCC
Q psy12860         86 GGWRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPK-IKLNKPYLILGKEKE  163 (198)
Q Consensus        86 N~~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~-L~~~r~yLIlg~~~~  163 (198)
                      +..|. .+|||..+.|++....+++..|++.|.+|+|.+....+ .|.  +++|.....|+++- |.+|+.|||||.+..
T Consensus        22 ~~AC~~~vdYvykv~v~~~~~~~~f~~Y~~~I~~ViK~G~D~~~-~~~--~r~F~~r~sCr~~l~l~~gk~YLIMG~~~~   98 (149)
T cd03583          22 DKACEPGVDYVYKVKLVNVELSDSYDIYTMEILQVIKEGTDEGP-EGK--TRTFISHPKCREALNLKEGKDYLIMGLSSD   98 (149)
T ss_pred             HhhCCCCCcEEEEEEEEEEeccCCeEEEEEEEEEEEecccccCc-CCC--eEEEEecCCCcchhccCCCCEEEEEeCCCC
Confidence            34565 46899999998877777788899999999998732233 443  66677778899985 459999999998755


Q ss_pred             C---CCCCCcccCcceeEEechHHH
Q psy12860        164 G---NQPSGLTMNAKSIVVEWKDEL  185 (198)
Q Consensus       164 ~---~~~~~l~~~~~Svv~~wk~sl  185 (198)
                      -   .+..+++++.+|+|..|...-
T Consensus        99 ~~~~~~~~~YvL~~~TWvE~wP~~~  123 (149)
T cd03583          99 LWRIKDKYSYVIGKDTWIEYWPTED  123 (149)
T ss_pred             ccccCCcEEEEeCCCeEEEECCChh
Confidence            1   123478999999999998743

Complement C3 plays a pivotal role in the activation of the complement systems, as all pathways (classical, alternative, and lectin) result in the processing of C3 by C3 convertase. The larger fragment, activated C3b, contains the NTR/C345C domain and binds covalently, via a reactive thioester, to cell surface carbohydrates including components of bacterial cell walls and immune aggregates. The smaller cleavage product, C3a, acts independently as a diffusible signal to mediate local inflammatory processes. The structure of C3 shows that the NTR/C345C domain is located in an exposed position relative to the rest of the molecule. The function of the domain in complement C3 is poorly understood.

>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases

Probab=96.77  E-value=0.00068  Score=50.71  Aligned_cols=86  Identities=22%  Similarity=0.374  Sum_probs=52.4

Q ss_pred             eeccccccccc-c-cchhHHHHHHHHHHhhccCCCCCCC-CC--ceEEEEecCccccCCCCcccCc-ceeeecccCCCCC
Q psy12860         93 KSTIVGKISEK-I-NLKEWVRFTMNIQSMYKRAPDSKLK-KG--AVYLWIHNKDLQCKCPKIKLNK-PYLILGKEKEGNQ  166 (198)
Q Consensus        93 degi~~~V~~~-~-~~g~~~~f~~kv~~v~K~~p~~ri~-rg--~F~I~H~AgdV~Y~cp~L~~~r-~yLIlg~~~~~~~  166 (198)
                      |++|.+.|.+. + .++.++  ++.+..+||.. .--++ .|  ...+.-.--++.|.||.|..+. .|||||..++   
T Consensus         8 dFVI~gkVtel~~~~~sg~a--~Vsl~k~~K~~-klgl~~~g~~~le~~l~k~~~~CpCP~l~~g~~~yiIMG~v~d---   81 (109)
T cd03575           8 DFAIVGRLTELTEELDSGHA--RVTLEEVLKDE-KMGLKFFGTEPLEVTLLNMDWSCPCPNITAGEGPLIIMGDVHD---   81 (109)
T ss_pred             ceEEEEEEEEEEecCCCceE--EEEEeeeeccc-ccCccccCcccceEEeeccCccCCCCccccccccEEEEEEecC---
Confidence            67888888763 2 223333  34556667753 11111 22  1112222346689999999987 9999997553   


Q ss_pred             CCCcccCcceeEEechHHH
Q psy12860        167 PSGLTMNAKSIVVEWKDEL  185 (198)
Q Consensus       167 ~~~l~~~~~Svv~~wk~sl  185 (198)
                       ++.++.|.|+|..=.+.=
T Consensus        82 -G~~~l~p~sfv~~~~~~r   99 (109)
T cd03575          82 -GMAVLQPDSYVRASSERR   99 (109)
T ss_pred             -CeEeeCchheeeeccHHH
Confidence             356788899998755443

Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.

>PF00965 TIMP: Tissue inhibitor of metalloproteinase; InterPro: IPR001820 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=91.85  E-value=0.016  Score=46.99  Aligned_cols=79  Identities=22%  Similarity=0.444  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcccCcceeEEechHHHHHH
Q psy12860        109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDR  188 (198)
Q Consensus       109 ~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~~~~~Svv~~wk~sl~~l  188 (198)
                      ..+|.+++.++||..+..........|.-.+.+-.|... |.+|..|||.|+...   .+.+.++-=+++.+|.+     
T Consensus        43 ~~~Y~vkv~kvfKg~~~~~~~~~~~~i~T~~~~s~CGv~-l~~g~~YLIaG~~~~---~g~l~i~~C~~v~~w~~-----  113 (181)
T PF00965_consen   43 NIRYEVKVTKVFKGPSKLGKMTDIQFIYTPSSSSLCGVK-LELGKEYLIAGRVVS---DGKLHISLCSFVEPWDS-----  113 (181)
T ss_dssp             EEEEEEEEEEEEESCSSSSTTTS-SEEEEESSGGGTS-----SSSEEEEEEEEES---TTEEE--TTSCEEEGGG-----
T ss_pred             cEEEEEEEEEEEcCCcccccccccceeccCCcccccCcc-cCCCceEEEEEEecC---CCcEEEEECCcEeehhh-----
Confidence            457777888889875221111122235544556678887 999999999996432   23566677789999976     


Q ss_pred             HHHHHHhc
Q psy12860        189 MRQFQRRG  196 (198)
Q Consensus       189 m~~l~r~~  196 (198)
                      |..-||++
T Consensus       114 lt~~Qr~g  121 (181)
T PF00965_consen  114 LTPSQRRG  121 (181)
T ss_dssp             S-HHHHHC
T ss_pred             CCHHHHhh
Confidence            44444443

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Tissue inhibitors of metalloproteinases (TIMPs, [, , ]) and their target matrix metalloproteinases (MMPs, MEROPS peptidase family M10A) are important in connective tissue re-modelling in diseases of the cardiovascular system and in the physiological degradation of connective tissue, as well as in pathological states such as tumour invasion and arthritis. TIMPs belong to MEROPS proteinase inhibitor family I35, clan IT. TIMPs complex with extracellular matrix metalloproteinases (such as collagenases) and irreversibly inactivate them. Members of this family are common in extracellular regions of vertebrate species []. TIMPs are proteins of about 200 amino acid residues, 12 of which are cysteines involved in disulphide bonds []. The basic structure of such a type of inhibitor is shown in the following schematic representation: +-----------------------------+ +--------------+ | | | | CxCxCxxxxxxxxxxxxxxxxxCxxxxxxxxxCxxxxxxxCxCxCxCxCxxxxxCxxCxxx | | | | | | | | | +-----------------|-----------------+ +-+ +-----+ +---------------------+ 'C': conserved cysteine involved in a disulphide bond. The crystal structure of the human proMMP-2/TIMP-2 complex reveals an interaction between the hemopexin domain of proMMP-2 and the C-terminal domain of TIMP-2, leaving the catalytic site of MMP-2 and the inhibitory site of TIMP-2 distant and spatially isolated. The interfacial contact of these two proteins is characterised by two distinct binding regions composed of alternating hydrophobic and hydrophilic interactions. This unique structure provides information for how specificity for non-inhibitory MMP/TIMP complex formation is achieved []. ; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 2E2D_C 1BUV_T 1BQQ_T 1BR9_A 1GXD_D 2TMP_A 2J0T_F 1D2B_A 3MA2_C 1UEA_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		2e-04
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		4e-04
1b7t_A	835	Myosin Digested By Papain Length = 835		4e-04
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		4e-04
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		4e-04
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		4e-04

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  ++ +   K      G+V   +DFG
Sbjct: 475 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKE----GIVWEFIDFG 516

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  I+    E+      G+    +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 513

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  I+    E+      G+    +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 513

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  I+    E+      G+    +DFG
Sbjct: 468 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 509

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  I+    E+      G+    +DFG
Sbjct: 467 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 508

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39  FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
           FEQLCINY NE LQ +FN H  I+ +   K      G+    +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKE----GIAWEFIDFG 513

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	2e-09
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	3e-09
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	3e-09
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	3e-09
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	4e-09
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1uap_A	154	Procollagen C-proteinase enhancer protein; beta ba	6e-07
3hrz_C	379	Cobra venom factor; serine protease, glycosilated,	5e-06
3cki_B	121	Metalloproteinase inhibitor 3; extra-cellular matr	8e-04

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQ CINY NE LQ +FN+ 
Sbjct: 464 FEQFCINYCNEKLQQFFNER 483

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 15/20 (75%), Positives = 15/20 (75%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQ CINYANE LQ  FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCIN+ NE LQ +FN H
Sbjct: 473 FEQLCINFTNEKLQQFFNHH 492

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQL IN+ NE LQ  F + 
Sbjct: 398 FEQLNINFCNEKLQQLFIEL 417

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ +FN H
Sbjct: 472 FEQLCINYTNERLQQFFNHH 491

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 15/20 (75%), Positives = 15/20 (75%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQ CINYANE LQ  FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 14/20 (70%), Positives = 14/20 (70%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ  FN  
Sbjct: 445 FEQLCINYTNEKLQQLFNHT 464

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 14/20 (70%), Positives = 14/20 (70%)

Query: 39  FEQLCINYANEHLQYYFNQH 58
           FEQLCINY NE LQ  FN  
Sbjct: 476 FEQLCINYTNEKLQQLFNHT 495

>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C* Length = 379

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
              + M++  + K+  D +  +   + +I  +    +   +K+N  YLI G   +     
Sbjct: 274 NDIYVMDVLEVIKQGTD-ENPRAKTHQYISQRKC-QEALNLKVNDDYLIWGSRSDLLPTK 331

Query: 169 G---LTMNAKSIVVEWKDELHDRMRQFQRR 195
                 +   + +  W  E   +  +FQ+ 
Sbjct: 332 DKISYIITKNTWIERWPHEDECQEEEFQKL 361

>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens} Length = 121

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 90  FEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKI 149
              ++ +VGK   K      + +T+    MY+            Y+     +  C     
Sbjct: 17  IVIRAKVVGKKLVKEGPFGTLVYTIKQMKMYR---GFTKMPHVQYIHTEASESLCGLKLE 73

Query: 150 KLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
                YL+ G+  +G     +     + V  W     D++   QR+G
Sbjct: 74  VNKYQYLLTGRVYDGK----MYTGLCNFVERW-----DQLTLSQRKG 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	99.97
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	99.97
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.97
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	99.97
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	99.97
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	99.97
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	99.97
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	99.96
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	99.96
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.96
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	99.96
1uap_A	154	Procollagen C-proteinase enhancer protein; beta ba	99.57
3hrz_C	379	Cobra venom factor; serine protease, glycosilated,	98.67
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.34
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.21
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.18
4fxk_C	291	Complement C4 gamma chain; immune system, proteoly	98.16
3v96_A	184	Metalloproteinase inhibitor 1; metzincin, OB-fold,	97.56
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	96.05
3cki_B	121	Metalloproteinase inhibitor 3; extra-cellular matr	95.56
2e2d_C	180	TIMP-2, metalloproteinase inhibitor 2; matrix meta	90.9

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=99.97  E-value=1.6e-33  Score=269.50  Aligned_cols=160  Identities=19%  Similarity=0.240  Sum_probs=126.5

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---cccccccc--ccc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISE--KIN  105 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~--~~~  105 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|.+|+|.||++||||++   ||+++|++  +-+
T Consensus       441 FE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~Eq----eeY~~EgI~w~~i~f~DN~~~idLie~~~GIlslLDEec~~p  516 (795)
T 1w7j_A          441 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQ----EEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMP  516 (795)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCGGGCCCCCCHHHHHHHHSTTSHHHHHHHHHTST
T ss_pred             ccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHhcCCcccccCccccHHHHHHHHhcCCHHHhhhhhccCC
Confidence            4899999999999999999999999999999965    99999999999999999999999987   67777776  344


Q ss_pred             chhHHHHHHHHHHhh-ccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccC-CC-------C-
Q psy12860        106 LKEWVRFTMNIQSMY-KRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEK-EG-------N-  165 (198)
Q Consensus       106 ~g~~~~f~~kv~~v~-K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~-~~-------~-  165 (198)
                      .+++.+|+.+++..+ +.+|   .|+.....|+|.||||+|+|++.|+.. |+|.|      +|..+. ..       . 
T Consensus       517 ~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~  596 (795)
T 1w7j_A          517 KGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDE  596 (795)
T ss_dssp             TCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC--
T ss_pred             CCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhccc
Confidence            566899999998887 6654   456667799999999999999999654 67765      232222 10       0 


Q ss_pred             ------CC----------------------CCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        166 ------QP----------------------SGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       166 ------~~----------------------~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                            ..                      ..-...+.||+.+|+.||..||..|.+
T Consensus       597 ~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~  653 (795)
T 1w7j_A          597 EKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNA  653 (795)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhc
Confidence                  00                      001234579999999999999999975

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=99.97  E-value=1.6e-33  Score=266.33  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=125.9

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----cccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISE--KI  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~--~~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|.+|+|.||++||||++    ||+++|++  +.
T Consensus       390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~Eq----eeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~  465 (697)
T 1lkx_A          390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQ----EEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLI  465 (697)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHS
T ss_pred             ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCC
Confidence            4899999999999999999999999999999965    99999999999999999999999987    67788876  34


Q ss_pred             cchhHHHHHHHHHHhhccCC---CC------CCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC----
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DS------KLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG----  164 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~------ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~----  164 (198)
                      +.+++.+|+.+++..++.+|   .+      ......|+|.||||+|+|++.|+.. |+|.|      +|..+...    
T Consensus       466 p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~  545 (697)
T 1lkx_A          466 AKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG  545 (697)
T ss_dssp             TTCCHHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHH
T ss_pred             CCCChHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHH
Confidence            56668999999998887664   11      1235689999999999999999755 77766      22222110    


Q ss_pred             --C--CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        165 --N--QPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       165 --~--~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                        +  ....-...+.|++.+|+.||..||..|.+-
T Consensus       546 lf~~~~~~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t  580 (697)
T 1lkx_A          546 LFPPTRPEDSKKRPETAGSQFRNAMNALITTLLAC  580 (697)
T ss_dssp             HCC-----------CCHHHHHHHHHHHHHHHHTTS
T ss_pred             hccccccccccCCCCcHHHHHHHHHHHHHHHHHcc
Confidence              0  001112345799999999999999999753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.97  E-value=7.6e-33  Score=272.28  Aligned_cols=160  Identities=19%  Similarity=0.252  Sum_probs=127.6

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---cccccccc--ccc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISE--KIN  105 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~--~~~  105 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|.||++||||++   ||+++|++  +-+
T Consensus       441 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~Eq----eeY~~EgI~w~~i~f~dn~~~idlie~~~Gil~lLdee~~~p  516 (1080)
T 2dfs_A          441 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQ----EEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMP  516 (1080)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTCCTTCCCCCCCHHHHHHHHSTTSHHHHHHHHTTST
T ss_pred             ccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHH----HHHhhcCCccccccccccHHHHHHHhcCCceeeeccccccCC
Confidence            4899999999999999999999999999999965    99999999999999999999999987   67777776  345


Q ss_pred             chhHHHHHHHHHHhh-ccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eeccc-CCC------C--
Q psy12860        106 LKEWVRFTMNIQSMY-KRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKE-KEG------N--  165 (198)
Q Consensus       106 ~g~~~~f~~kv~~v~-K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~-~~~------~--  165 (198)
                      .+++.+|+.+++..+ +.+|   .|+.....|+|.||||+|+|++.|+.. |+|.|      +|..+ ...      +  
T Consensus       517 ~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~  596 (1080)
T 2dfs_A          517 KGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDE  596 (1080)
T ss_dssp             TCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC--
T ss_pred             CCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhccc
Confidence            567899999998887 6554   456667799999999999999999755 77765      22222 110      0  


Q ss_pred             ----CC------------------------CCcccCcceeEEechHHHHHHHHHHHH
Q psy12860        166 ----QP------------------------SGLTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       166 ----~~------------------------~~l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                          ..                        ..-...+.||+.+|+.||..||..|..
T Consensus       597 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~  653 (1080)
T 2dfs_A          597 EKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNA  653 (1080)
T ss_dssp             -----------------------------------CCCBHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence                00                        011234579999999999999999975

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=99.97  E-value=1.2e-32  Score=263.28  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=125.4

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|.||++||||++    ||+++|++.  -
T Consensus       456 FE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~Eq----eeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~  531 (784)
T 2v26_A          456 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQ----ELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRL  531 (784)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHS
T ss_pred             cccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcC
Confidence            4899999999999999999999999999999965    99999999999999999999999987    778888773  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCCC----------CCCceEEEEecCccccCCCCccc-Cccee------eecccCC-
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSKL----------KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE-  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~ri----------~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~-  163 (198)
                      +.+++.+|+.+++..++.++   .|+.          ....|+|.||||+|+|++.|+.. |+|.|      +|..+.. 
T Consensus       532 p~~tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~  611 (784)
T 2v26_A          532 PQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDK  611 (784)
T ss_dssp             SSCCHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCH
T ss_pred             CCCChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhh
Confidence            45667899999998887653   1211          13479999999999999999655 77766      2222111 


Q ss_pred             -----------CCCC---CCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 -----------GNQP---SGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 -----------~~~~---~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                                 .+..   ..-.....||+.+|+.||..||..|.+-
T Consensus       612 ~l~~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t  657 (784)
T 2v26_A          612 FIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRST  657 (784)
T ss_dssp             HHHHHC----------------CCCCBHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcccccccccCcccCCCCCccccHHHHHHHHHHHHHHHHHcc
Confidence                       0000   0112234799999999999999999753

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=99.97  E-value=9.6e-33  Score=269.98  Aligned_cols=161  Identities=17%  Similarity=0.215  Sum_probs=124.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|.||++||||++    ||+++|++.  -
T Consensus       460 FE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~Eq----eeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~  535 (1052)
T 4anj_A          460 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQ----ELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRL  535 (1052)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHS
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcC
Confidence            4899999999999999999999999999999965    99999999999999999999999987    677788762  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CCC---------C-CCCceEEEEecCccccCCCCccc-Cccee------eecccCC-
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DSK---------L-KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE-  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~r---------i-~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~-  163 (198)
                      +.+++.+|+.+++..++.++   .++         . ....|+|.||||+|+|++.|+.. |+|.|      +|..+.. 
T Consensus       536 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~  615 (1052)
T 4anj_A          536 PQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDK  615 (1052)
T ss_dssp             SSCCHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCH
T ss_pred             CCCcHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcH
Confidence            45667999999998887653   111         1 13469999999999999999755 77766      2222111 


Q ss_pred             ----------CC----CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 ----------GN----QPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 ----------~~----~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                                ..    ....-.....||+.+|+.||..||..|.+-
T Consensus       616 ~i~~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t  661 (1052)
T 4anj_A          616 FIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRST  661 (1052)
T ss_dssp             HHHHTTCC----------------CCBHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhhhccccccccccCCCCCCCCccHHHHHHHHHHHHHHHHcCc
Confidence                      00    011122345699999999999999999864

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=99.97  E-value=2.1e-32  Score=261.14  Aligned_cols=161  Identities=18%  Similarity=0.214  Sum_probs=122.9

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee---ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS---TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde---gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|. ||++||||++   ||+++|++.  -
T Consensus       465 FE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~Eq----eeY~~EgI~w~~i~f~~Dn~~~idLiekp~Gil~lLDEec~~  540 (783)
T 4db1_A          465 FEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQ----EEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMF  540 (783)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTCCCCCCCGGGGGHHHHHHHHSTTSHHHHHCC-TTC
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhhcCCCcccccccCChHHHHHHHhCCCchHhhhhHHhcC
Confidence            4999999999999999999999999999999965    9999999999999995 9999999987   777888773  3


Q ss_pred             cchhHHHHHHHHHHhh-ccCC---CCCCC----CCceEEEEecCccccCCCCccc-Cccee------eecccCC------
Q psy12860        105 NLKEWVRFTMNIQSMY-KRAP---DSKLK----KGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE------  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~-K~~p---~~ri~----rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~------  163 (198)
                      +.+++.+|+.+++..+ ..+|   .++..    ...|+|.||||+|+|++.|+.. |+|.|      +|..+..      
T Consensus       541 p~~tD~tf~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~l  620 (783)
T 4db1_A          541 PKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTL  620 (783)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHH
Confidence            4566799999998765 5543   23332    4579999999999999999655 77766      2222111      


Q ss_pred             -----CCC------CC--CcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 -----GNQ------PS--GLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 -----~~~------~~--~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                           ...      .+  +-.....||+.+|+.||..||..|.+-
T Consensus       621 f~~~~~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t  665 (783)
T 4db1_A          621 FANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRST  665 (783)
T ss_dssp             HHSCC------------------CCCHHHHHHHHHHHHHHHHHTS
T ss_pred             hhccccccccccCccCCCCcCCCCccHHHHHHHHHHHHHHHHHcc
Confidence                 000      00  011123789999999999999999863

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=99.97  E-value=2.2e-32  Score=260.52  Aligned_cols=161  Identities=18%  Similarity=0.230  Sum_probs=124.7

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee-----cccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS-----TIVGKISE--  102 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde-----gi~~~V~~--  102 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|. ||++||||++     ||+++|++  
T Consensus       458 FE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~Eq----eeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec  533 (770)
T 1w9i_A          458 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQ----EEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQS  533 (770)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHH----HHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhh
Confidence            4899999999999999999999999999999965    9999999999999995 9999999987     46777776  


Q ss_pred             cccchhHHHHHHHH-HHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC-------
Q psy12860        103 KINLKEWVRFTMNI-QSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG-------  164 (198)
Q Consensus       103 ~~~~g~~~~f~~kv-~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~-------  164 (198)
                      +-+.+++.+|+.++ ...+..+|   .|+..+..|+|.||||+|+|++.|+.. |+|.|      +|..+...       
T Consensus       534 ~~p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~  613 (770)
T 1w9i_A          534 VFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFN  613 (770)
T ss_dssp             SSSSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhh
Confidence            33456679999985 44455554   344445789999999999999999755 77776      22222110       


Q ss_pred             C----CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        165 N----QPSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       165 ~----~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      .    +..+-.....||+.+|+.||..||..|.+-
T Consensus       614 ~~~~~~~~~k~~~~~Tv~~~fk~sL~~Lm~~L~~t  648 (770)
T 1w9i_A          614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETT  648 (770)
T ss_dssp             CHHHHCCCEETTEECCHHHHHHHHHHHHHHHHHTS
T ss_pred             ccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHhc
Confidence            0    000011234799999999999999999853

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=99.96  E-value=3.6e-32  Score=261.35  Aligned_cols=161  Identities=20%  Similarity=0.243  Sum_probs=122.3

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee---ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS---TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde---gi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+| .||++||||++   ||+++|++.  -
T Consensus       464 FE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~Eq----eeY~~EgI~w~~i~f~~dn~~~idLiekp~GIlslLDEec~~  539 (837)
T 1kk8_A          464 FEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQ----EEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMF  539 (837)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTC
T ss_pred             ccccccccHHHHHHHHhhHHHHHHHHHhhhHHHH----HHhhhcCCceeecccccCHHHHHHHHhcCCcHHHHHHHHhcC
Confidence            4899999999999999999999999999999965    999999999999999 49999999987   777788763  3


Q ss_pred             cchhHHHHHHHH-HHhhccCC---CCCC------CCCceEEEEecCccccCCCCccc-Cccee------eecccCC----
Q psy12860        105 NLKEWVRFTMNI-QSMYKRAP---DSKL------KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE----  163 (198)
Q Consensus       105 ~~g~~~~f~~kv-~~v~K~~p---~~ri------~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~----  163 (198)
                      +.+++.+|+.++ ...++.+|   .++.      ....|+|.||||+|+|++.|+.. |+|.|      +|..+..    
T Consensus       540 p~~tD~tf~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~  619 (837)
T 1kk8_A          540 PKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVA  619 (837)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHH
T ss_pred             CCCChHHHHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHH
Confidence            456679999985 44455543   2333      25689999999999999999755 77766      2222111    


Q ss_pred             ----CCC----CCCc----ccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 ----GNQ----PSGL----TMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 ----~~~----~~~l----~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                          ...    .+.-    ...+.||+.+|+.||..||..|..-
T Consensus       620 ~Lf~~~~~~~g~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t  663 (837)
T 1kk8_A          620 ELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYST  663 (837)
T ss_dssp             HHTCC------------------CCHHHHHHHHHHHHHHHHTTE
T ss_pred             HHhcccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcc
Confidence                000    0000    0235799999999999999999753

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=99.96  E-value=1.2e-31  Score=262.19  Aligned_cols=161  Identities=19%  Similarity=0.247  Sum_probs=127.6

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee-----cccccccc--
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS-----TIVGKISE--  102 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde-----gi~~~V~~--  102 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|. ||++||||++     ||+++|++  
T Consensus       458 FE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~Eq----eeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~  533 (1010)
T 1g8x_A          458 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQ----EEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQS  533 (1010)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHT
T ss_pred             cccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHH----HHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHh
Confidence            4899999999999999999999999999999965    9999999999999996 9999999987     46777776  


Q ss_pred             cccchhHHHHHHHHHHhhc-cCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC------C
Q psy12860        103 KINLKEWVRFTMNIQSMYK-RAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG------N  165 (198)
Q Consensus       103 ~~~~g~~~~f~~kv~~v~K-~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~------~  165 (198)
                      +-+.+++.+|+.+++..+. .+|   .|+..++.|+|.||||+|+|++.|+.. |+|.|      +|..+...      +
T Consensus       534 ~~p~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~  613 (1010)
T 1g8x_A          534 VFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFN  613 (1010)
T ss_dssp             TSSSCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhc
Confidence            3345667999999998887 654   355556799999999999999999755 77766      22222110      0


Q ss_pred             C-----CCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        166 Q-----PSGLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       166 ~-----~~~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                      .     ..+-.....||+.+|+.||..||..|..-
T Consensus       614 ~~~~~~~~~k~~~~~tv~~~fk~sL~~Lm~~L~~t  648 (1010)
T 1g8x_A          614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETT  648 (1010)
T ss_dssp             CHHHHSCCCCSSSCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             ccccccCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence            0     01112245899999999999999999753

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.96  E-value=1e-31  Score=266.63  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=124.6

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee------ccccccccc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS------TIVGKISEK  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde------gi~~~V~~~  103 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+|. ||++||||++      ||+++|++.
T Consensus       468 FE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq----~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee  543 (1184)
T 1i84_S          468 FEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQ----EEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEE  543 (1184)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHT
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhh
Confidence            4899999999999999999999999999999965    9999999999999995 9999999976      667777763


Q ss_pred             --ccchhHHHHHHHHHHhhccCC---CCCC--CCCceEEEEecCccccCCCCccc-Cccee------eecccCC------
Q psy12860        104 --INLKEWVRFTMNIQSMYKRAP---DSKL--KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE------  163 (198)
Q Consensus       104 --~~~g~~~~f~~kv~~v~K~~p---~~ri--~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~------  163 (198)
                        -+.+++.+|+.+++..++.+|   .|+.  ....|+|.||||+|+|++.|+.. |+|.|      +|..+..      
T Consensus       544 ~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~l  623 (1184)
T 1i84_S          544 CWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADL  623 (1184)
T ss_dssp             TSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHH
T ss_pred             hCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHH
Confidence              345678999999998887664   2433  35689999999999999999655 77766      1221111      


Q ss_pred             --C-C---C---------C--CC----cccCcceeEEechHHHHHHHHHHHH
Q psy12860        164 --G-N---Q---------P--SG----LTMNAKSIVVEWKDELHDRMRQFQR  194 (198)
Q Consensus       164 --~-~---~---------~--~~----l~~~~~Svv~~wk~sl~~lm~~l~r  194 (198)
                        . .   +         .  ++    -.....||+.+|+.||..||..|..
T Consensus       624 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~  675 (1184)
T 1i84_S          624 WKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRN  675 (1184)
T ss_dssp             HSCCTTCCCC---------------------CCCHHHHHHHHHHHHHHHHTT
T ss_pred             hccccccccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHh
Confidence              0 0   0         0  00    0112378999999999999999975

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=99.96  E-value=3.7e-31  Score=258.63  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=124.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee------ccccccccc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS------TIVGKISEK  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde------gi~~~V~~~  103 (198)
                      .|+|+.|||||||||||||+|||+|++++|..||    +||.+|||+|++|+| .||++||||++      ||+++|++.
T Consensus       437 FE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~Eq----eeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee  512 (995)
T 2ycu_A          437 FEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQ----EEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEE  512 (995)
T ss_dssp             BCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHS
T ss_pred             ccccccchHHHHHHHhhHHHHHHHHHHhhhHHHH----HHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHH
Confidence            4899999999999999999999999999999965    999999999999999 59999999976      467777763


Q ss_pred             --ccchhHHHHHHHHHHhhccCC---CCCCC--CCceEEEEecCccccCCCCccc-Cccee------eecccCC------
Q psy12860        104 --INLKEWVRFTMNIQSMYKRAP---DSKLK--KGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE------  163 (198)
Q Consensus       104 --~~~g~~~~f~~kv~~v~K~~p---~~ri~--rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~------  163 (198)
                        -+.+++.+|+.++...+..+|   .|+..  ...|+|.||||+|+|++.|+.. |+|.|      +|..+..      
T Consensus       513 ~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~l  592 (995)
T 2ycu_A          513 CWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEI  592 (995)
T ss_dssp             SSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHH
Confidence              345668999999888886654   23332  4689999999999999999655 67765      1221111      


Q ss_pred             --CCC------------C---C--CcccCcceeEEechHHHHHHHHHHHHh
Q psy12860        164 --GNQ------------P---S--GLTMNAKSIVVEWKDELHDRMRQFQRR  195 (198)
Q Consensus       164 --~~~------------~---~--~l~~~~~Svv~~wk~sl~~lm~~l~r~  195 (198)
                        ...            .   +  +-...+.||+.+|+.||..||..|..-
T Consensus       593 f~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t  643 (995)
T 2ycu_A          593 WKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNT  643 (995)
T ss_dssp             TSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTS
T ss_pred             hhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence              000            0   0  011234799999999999999999753

>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C*

Probab=98.67  E-value=5.7e-10  Score=98.95  Aligned_cols=104  Identities=13%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCC-CCcccCcceeeecccCCC---CCC
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKEG---NQP  167 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~~---~~~  167 (198)
                      .|||..+.|.+.+..++|..|++.|..++|.+ ...+.+|+...  |.....|.| ++|.+|+.|||||.++..   ...
T Consensus       257 ~dYvykv~v~~~~~~~~~~~y~~~I~~V~K~G-~d~~~~g~~r~--fi~~~~C~~~l~L~~gk~YLImG~~~~~~~~~~~  333 (379)
T 3hrz_C          257 VDYVYKTKLLRIEEQDGNDIYVMDVLEVIKQG-TDENPRAKTHQ--YISQRKCQEALNLKVNDDYLIWGSRSDLLPTKDK  333 (379)
T ss_dssp             CCEEEEEEEEEEEEETTEEEEEEEEEEEEECC-SCSCGGGSCEE--EEEEGGGHHHHCCCTTCEEEEEECGGGBCCCTTS
T ss_pred             cceEEEEEEEEEeecCCeEEEEEEEEEEEecC-CcccCCCCeEE--EEecccCCcccCCCCCCEEEEeccCccccccCCc
Confidence            47888888888877788999999999999987 45566776333  333458999 799999999999986551   234


Q ss_pred             CCcccCcceeEEechHH--------------HHHHHHHHHHhcCC
Q psy12860        168 SGLTMNAKSIVVEWKDE--------------LHDRMRQFQRRGCT  198 (198)
Q Consensus       168 ~~l~~~~~Svv~~wk~s--------------l~~lm~~l~r~~~~  198 (198)
                      .++++|..|++.+|++.              |...+..+.-.+|.
T Consensus       334 ~~Y~l~~~Twve~Wp~~~~c~~~~~~~~c~~l~~f~~~~~~~GC~  378 (379)
T 3hrz_C          334 ISYIITKNTWIERWPHEDECQEEEFQKLCDDFAQFSYTLTEFGCP  378 (379)
T ss_dssp             EEEECCTTCEEEEECCTGGGGSTTTHHHHHHHHHHHHHHHHHCCC
T ss_pred             cEEEECCCcEEEECCChhhhcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            57899999999999765              55555666666663

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.34  E-value=2.6e-08  Score=96.82  Aligned_cols=104  Identities=14%  Similarity=0.291  Sum_probs=81.3

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCC-CCcccCcceeeecccCC---CCCC
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKE---GNQP  167 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~---~~~~  167 (198)
                      .|||+.+.|.+.+..++|..|+++|.+|+|.+ .....+|.  .+.|.....|.| ++|.+|+.|||||.+..   ....
T Consensus       793 ~dy~~kv~v~~~~~~~~~~~y~~~i~~v~k~g-~d~~~~~~--~r~f~~~~~C~~~~~l~~g~~YLimG~~~~~~~~~~~  869 (915)
T 2hr0_B          793 VDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSG-SDEVQVGQ--QRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPN  869 (915)
T ss_dssp             EEEEEEEEEEEEEECSSEEEEEEEEEEEEECC-SSCCCTTC--EEEEEEEGGGHHHHCCCTTCEEEEEEEGGGEESCSSS
T ss_pred             ccEEEEEEEEEEeccCCeEEEEEEEEEEEecC-CccccCCC--eeEEEEcccCcccCCCCCCCEEEEeccCCcccccCCc
Confidence            67899899988777788999999999999987 44555565  233335559999 99999999999997443   1234


Q ss_pred             CCcccCcceeEEechH--------------HHHHHHHHHHHhcCC
Q psy12860        168 SGLTMNAKSIVVEWKD--------------ELHDRMRQFQRRGCT  198 (198)
Q Consensus       168 ~~l~~~~~Svv~~wk~--------------sl~~lm~~l~r~~~~  198 (198)
                      .+++++.+|++.+|++              .|......+.-.+|.
T Consensus       870 ~~y~l~~~t~ve~wp~~~~c~~~~~~~~~~~~~~~~~~~~~~gc~  914 (915)
T 2hr0_B          870 LSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCP  914 (915)
T ss_dssp             CEEECCTTCEEEEECCGGGTTSTTTHHHHHHHHHHHHHHHTSCCC
T ss_pred             eeEEeCCCcEEEECCChhhccChhhHHHHHHHHHHHHHHHHcCCC
Confidence            5789999999999986              677777777777774

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.21  E-value=1e-07  Score=97.74  Aligned_cols=103  Identities=17%  Similarity=0.306  Sum_probs=78.6

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCC--CC---
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG--NQ---  166 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~--~~---  166 (198)
                      .|||+.+.|.+.+..++|..|+++|.+++|.+ ...+.+|..  +.|.....|.|++|.+|+.|||||.+...  ..   
T Consensus      1557 ~dy~~~v~v~~~~~~~~~~~y~~~i~~v~k~g-~d~~~~~~~--~~f~~~~~C~~~~l~~g~~YLimG~~~~~~~~~~~~ 1633 (1676)
T 3cu7_A         1557 IAYAYKVSITSITVENVFVKYKATLLDIYKTG-EAVAEKDSE--ITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSF 1633 (1676)
T ss_dssp             CCEEEEEEEEECCCSSSCCEEEEEEEEEEECC-TTCCCTTCC--EEEECCTTCTTCCCCSSCCCEEEESCCCCCCCSSCC
T ss_pred             ccEEEEEEEEEeeccCCeEEEEEEEEEEEecC-CccccCCCe--eEEEecCCCCCCCCcCCCEEEEECCCCcccCCCccc
Confidence            68999999988887888999999999999988 445666753  33446669999999999999999954321  12   


Q ss_pred             CCCcccCcceeEEechH------------HHHHHHHHHHHhcC
Q psy12860        167 PSGLTMNAKSIVVEWKD------------ELHDRMRQFQRRGC  197 (198)
Q Consensus       167 ~~~l~~~~~Svv~~wk~------------sl~~lm~~l~r~~~  197 (198)
                      +.++++|..|++.+|++            .|......+.-.+|
T Consensus      1634 ~~~y~l~~~t~ve~wp~~~~c~~~~~~~~~~~~~~~~~~~~gc 1676 (1676)
T 3cu7_A         1634 RYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676 (1676)
T ss_dssp             CCCBCCCSSCCCBCCCSSSSSSSCCHHHHTTTHHHHHHTTSCC
T ss_pred             ceEEEeCCCcEEEECCChHHhhhHHHHHHHHHHHHHHHhhCCC
Confidence            35899999999999997            45555555554444

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.18  E-value=7e-08  Score=98.75  Aligned_cols=104  Identities=13%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCC-CCcccCcceeeecccCC---CCCC
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKE---GNQP  167 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~---~~~~  167 (198)
                      .|||..+.|.+.+..++|..|+++|.+++|.+ ...+.+|+.  ++|.....|.| ++|.+|+.|||||.+..   ....
T Consensus      1520 ~dYvykv~v~~~~~~~~~~~y~~~i~~V~K~g-~d~~~~g~~--r~f~~~~~C~~~l~L~~gk~YLImG~~~~~~~~~~~ 1596 (1642)
T 3prx_B         1520 VDYVYKTKLLRIEEQDGNDIYVMDVLEVIKQG-TDENPRAKT--HQYISQRKCQEALNLKVNDDYLIWGSRSDLLPTKDK 1596 (1642)
T ss_dssp             CCEEEEEEEEEEEEETTEEEEEEEEEEEEECC-SSSCTTTSC--EEEEEEGGGHHHHCCCTTCEEEEEECGGGEECCSSS
T ss_pred             ccEEEEEEEEEEeccCCeEEEEEEEEEEEecC-CccccCCCe--EEEEecCcCCCccCCCCCCEEEEeecCccccccCCc
Confidence            47888888888887888999999999999987 456777763  33333448999 79999999999998655   1234


Q ss_pred             CCcccCcceeEEechHH--------------HHHHHHHHHHhcCC
Q psy12860        168 SGLTMNAKSIVVEWKDE--------------LHDRMRQFQRRGCT  198 (198)
Q Consensus       168 ~~l~~~~~Svv~~wk~s--------------l~~lm~~l~r~~~~  198 (198)
                      .++++|.+|++.+|++.              |...+..+.-.+|.
T Consensus      1597 ~~y~l~~~twve~Wp~~~~c~~~~~~~~c~~l~~f~~~~~~~gC~ 1641 (1642)
T 3prx_B         1597 ISYIITKNTWIERWPHEDECQEEEFQKLCDDFAQFSYTLTEFGCP 1641 (1642)
T ss_dssp             EEEECCTTCEEEECCCTTGGGSTTTHHHHHHHHHHHHHHHTSCCC
T ss_pred             eEEEECCceEEEECCChhhhcChhhHHHHHHHHHHHHHHHHcCCC
Confidence            57899999999999764              66666666666773

>4fxk_C Complement C4 gamma chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_C*

Probab=98.16  E-value=2.3e-07  Score=79.48  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCC---CCCC
Q psy12860         92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG---NQPS  168 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~---~~~~  168 (198)
                      .|||..+.|.+....+++..|.+.|..+++.+....+..|.  ++.|....+|++ +|.+|++|||||.+..-   .+..
T Consensus       170 ~dYvykv~v~~~~~~~~~~~y~~~I~~Vik~g~d~~~~~~~--~r~F~~~~~C~l-~L~~gk~YLImG~~~~~~~~~~~~  246 (291)
T 4fxk_C          170 VEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQ--MRNFLVRASCRL-RLEPGKEYLIMGLDGATYDLEGHP  246 (291)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEEEEECSSCTTCCSSC--EEEEEEETTSCC-CCCTTCEEEEECCCCSCBCTTSCB
T ss_pred             cEEEEEEEEEEEEecCCeEEEEEEEEEEEeccccccccCCC--EEEEEecCCCCC-CcccCCEEEEeecCCCccccCCCE
Confidence            46788888877766677888889999999987333444454  445555568985 89999999999986652   1234


Q ss_pred             CcccCcceeEEechHH
Q psy12860        169 GLTMNAKSIVVEWKDE  184 (198)
Q Consensus       169 ~l~~~~~Svv~~wk~s  184 (198)
                      +++++..|++..|...
T Consensus       247 ~Y~L~~~TwvE~WP~~  262 (291)
T 4fxk_C          247 QYLLDSNSWIEEMPSE  262 (291)
T ss_dssp             EEECCSSCEEEECCCH
T ss_pred             EEEcCCCcEEEECCCc
Confidence            6899999999999743

>3v96_A Metalloproteinase inhibitor 1; metzincin, OB-fold, metalloproteinase, protease inhibitor, H inhibitor-hydrolase complex; 1.90A {Homo sapiens} PDB: 1uea_B 1d2b_A 1oo9_B 2j0t_D 3ma2_B

Probab=97.56  E-value=3.7e-06  Score=67.50  Aligned_cols=100  Identities=18%  Similarity=0.314  Sum_probs=66.6

Q ss_pred             eeecccccccccccch---hHHHHHHHHHHhhccCCCCCCC--CCceEEEEecCccccCCCC--cccCcceeeecccCCC
Q psy12860         92 FKSTIVGKISEKINLK---EWVRFTMNIQSMYKRAPDSKLK--KGAVYLWIHNKDLQCKCPK--IKLNKPYLILGKEKEG  164 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g---~~~~f~~kv~~v~K~~p~~ri~--rg~F~I~H~AgdV~Y~cp~--L~~~r~yLIlg~~~~~  164 (198)
                      -|+||.+.|.+....+   .+.+|.++|.++||.. . .+.  ++.-.||..+-+..|.|+-  +.++++|||+|+..  
T Consensus        15 sD~VirakVl~~~~~~~~~~~~~Y~Vki~kvfK~~-~-~~~~~~~~~~l~Tp~s~s~CG~~~~~~~~g~eYLIaG~~~--   90 (184)
T 3v96_A           15 SDLVIRAKFVGTPEVAQTTLYQRYEIKMTKMYKGF-Q-ALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQ--   90 (184)
T ss_dssp             CSEEEEEEEC------CCCSEEEEEEEEEEEEECC----------CCEEEEESSGGGTCCCCCCCCTTCEEEEEEEEE--
T ss_pred             CCEEEEEEEeeeeecCCCCcceEEEEEEEEEEcCC-c-cccccCCccEEEeCcccccCCcccccCCCCceEEEEEEcc--
Confidence            3789999998754332   3678999999999865 2 242  2323688888888999863  34699999999875  


Q ss_pred             CCCCCcccCcceeEEechH---HHHHHHHHHHHhcC
Q psy12860        165 NQPSGLTMNAKSIVVEWKD---ELHDRMRQFQRRGC  197 (198)
Q Consensus       165 ~~~~~l~~~~~Svv~~wk~---sl~~lm~~l~r~~~  197 (198)
                        .+++.++.-+++.+|++   .-.+-++...+.+|
T Consensus        91 --~g~L~i~~Cs~v~pW~~lt~~Qrkgl~~~Y~~gC  124 (184)
T 3v96_A           91 --DGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGC  124 (184)
T ss_dssp             --TTEEECCTTSCEEEGGGSCHHHHHHHHTTGGGTT
T ss_pred             --CCeEEEecCCceeEhHHCCHHHHhhhHHHHhcCC
Confidence              35899999999999965   33344444445555

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=96.05  E-value=7.8e-05  Score=76.53  Aligned_cols=93  Identities=14%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             ccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCC-CCcccCcceeeecccCCC-
Q psy12860         88 WRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKEG-  164 (198)
Q Consensus        88 ~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~~-  164 (198)
                      .|- .+|||..+.|.+....+++..|.+.|..++|.+..... .+.  .+.|....+|.+ .+|.+|+.|||||.+..- 
T Consensus      1534 ac~~~~~y~y~~~v~~~~~~~~~~~y~~~i~~v~k~g~d~~~-~~~--~r~f~~~~~C~~~~~l~~g~~ylimg~~~~~~ 1610 (1661)
T 2b39_A         1534 ACEPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSDEVQ-VKQ--ERKFISHIKCREALKLKEGAHYLVWGVSSDLW 1610 (1661)
T ss_dssp             TSSTTEEEEEEEEEEEEECCSSEEEEEEEEEEECSCCTTCCC-SSS--CCEEEEETTTHHHHCCCTTCEEEEEEESTTBC
T ss_pred             hccccCcEEEEEEEEEEeccCCeeEEEEEEEEeeecCCcccc-CCC--eEEEEEccccccccCCCCCCEEEEeccCCccc
Confidence            454 46788888887766666678888888999998732222 232  222334447887 789999999999975441 


Q ss_pred             --CCCCCcccCcceeEEechH
Q psy12860        165 --NQPSGLTMNAKSIVVEWKD  183 (198)
Q Consensus       165 --~~~~~l~~~~~Svv~~wk~  183 (198)
                        ....+++++..|++..|..
T Consensus      1611 ~~~~~~~y~l~~~tw~e~wp~ 1631 (1661)
T 2b39_A         1611 GEKPKISYIIGKDTWVELWPE 1631 (1661)
T ss_dssp             SBTTBCCEECCTTCBCCCCCC
T ss_pred             ccCCceEEEeCCCcEEEECCC
Confidence              1234789999999999985

>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens}

Probab=95.56  E-value=0.0014  Score=48.80  Aligned_cols=97  Identities=20%  Similarity=0.354  Sum_probs=62.0

Q ss_pred             eecccccccccccch----hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccC-cceeeecccCCCCCC
Q psy12860         93 KSTIVGKISEKINLK----EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLN-KPYLILGKEKEGNQP  167 (198)
Q Consensus        93 degi~~~V~~~~~~g----~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~-r~yLIlg~~~~~~~~  167 (198)
                      |+|+.+.|.+....+    ...+|.+++..+||.++  ++..-. .||-.+-+-.|.| .|..+ .+|||+|+..+    
T Consensus        16 DfVirakv~~~~~~~~~~~~~~~y~vk~~k~~K~~~--~~~~~~-~l~t~~~~~~Cg~-~l~~~~~~YLI~G~~~d----   87 (121)
T 3cki_B           16 DIVIRAKVVGKKLVKEGPFGTLVYTIKQMKMYRGFT--KMPHVQ-YIHTEASESLCGL-KLEVNKYQYLLTGRVYD----   87 (121)
T ss_dssp             SEEECCEEEEEEEECCSSSCEEEEEEECCCEEECTT--TSSSCC-EEEEESCGGGTCC-CCCTTCCCEEEEEEECS----
T ss_pred             CEEEEEEEEeEEEecCCCcceEEEEEEEEEEEcCCC--cCCcce-EEEeCCCCCCCCc-ccccCCeEEEEEEEecC----
Confidence            678888776532111    23456666677888652  222222 5666665556666 67775 79999998653    


Q ss_pred             CCcccCcceeEEechH---HHHHHHHHHHHhcC
Q psy12860        168 SGLTMNAKSIVVEWKD---ELHDRMRQFQRRGC  197 (198)
Q Consensus       168 ~~l~~~~~Svv~~wk~---sl~~lm~~l~r~~~  197 (198)
                      +.+.++.=+.+.+|..   ...+-++...+.+|
T Consensus        88 g~l~i~~C~~i~~W~~ls~~qk~~~~~~Y~~gC  120 (121)
T 3cki_B           88 GKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGC  120 (121)
T ss_dssp             SCEECCTTSCCEETTTCCHHHHHHHHTTTTCTT
T ss_pred             CEEEEeccCcEeEchhCCHHHHHHHHHHHhcCC
Confidence            3577887889999943   45566666666666

>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix metalloproteinase/MMP, collagenase, tissue inhibitor of metalloproteinases/TIMP, complex, flexibility; 2.00A {Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A 1gxd_C 2tmp_A

Probab=90.90  E-value=0.015  Score=46.12  Aligned_cols=96  Identities=18%  Similarity=0.398  Sum_probs=59.8

Q ss_pred             eecccccccccc--cch--------hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccC--cceeeecc
Q psy12860         93 KSTIVGKISEKI--NLK--------EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLN--KPYLILGK  160 (198)
Q Consensus        93 degi~~~V~~~~--~~g--------~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~--r~yLIlg~  160 (198)
                      |+++.+.|.+..  ..|        ...+|.+++.++||.. ..   .. ..|+-.+-+-.|.+ .|.++  .+|||+|+
T Consensus        16 D~VirakVl~~~~~~~g~d~~g~~~~~~~Y~Vkv~kvfKg~-~~---~~-~~v~Tp~~~s~CG~-~l~~g~~~eYLi~G~   89 (180)
T 2e2d_C           16 DIVIRAKAVNKKEVDSGNDIYGNPIKRIQYEIKQIKMFKGP-DQ---DI-EFIYTAPAAAVCGV-SLDIGGKKEYLIAGK   89 (180)
T ss_dssp             SEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEESC-SS---CC-CEEEECSCGGGTCC-CCCCSSSCEEEEEEE
T ss_pred             CEEEEEEEEeeeeeccCCcccCCCcceEEEEEEEEEEEcCC-CC---Cc-eEEEeCCCCccCCc-eeccCCceeEEEEEE
Confidence            566777766531  111        2456777777889865 22   12 25666666667888 57777  99999998


Q ss_pred             cCCCCCCCCcccCcceeEEechH---HHHHHHHHHHHhcC
Q psy12860        161 EKEGNQPSGLTMNAKSIVVEWKD---ELHDRMRQFQRRGC  197 (198)
Q Consensus       161 ~~~~~~~~~l~~~~~Svv~~wk~---sl~~lm~~l~r~~~  197 (198)
                      ...   .+.|.++-=+.+.+|.+   .-.+-++...+.+|
T Consensus        90 ~~~---dG~L~i~lC~~i~pW~~ls~~Qr~gl~~~Y~~gC  126 (180)
T 2e2d_C           90 AEG---NGNMHITLCDFIVPWDTLSATQKKSLNHRYQMGC  126 (180)
T ss_dssp             ECS---TTEEECCTTSCEEEGGGSCHHHHHHTTTHHHHHT
T ss_pred             eCC---CCeEEEeccCCEEEhHHCCHHHHhhhHhhccCCC
Confidence            653   23577888899999954   23333444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1uapa_	131	b.40.3.3 (A:) Procollagen c-proteinase enhancer pr	3e-16
d2j0td1	124	b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [T	1e-11
d1xwea_	151	b.40.3.3 (A:) Complement C5 domain {Human (Homo sa	2e-06
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	0.004

>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein PCOLCE {Human (Homo sapiens) [TaxId: 9606]} Length = 131

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Netrin-like domain (NTR/C345C module)
domain: Procollagen c-proteinase enhancer protein PCOLCE
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 3e-16
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 96  IVGKISEKINLK-EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKP 154
           +   +   +    E +  T+++   YK      L        +       +CP +K    
Sbjct: 28  VTATVKSMVREPGEGLAVTVSLIGAYKTGG-LDLPSPPTGASLKFYVPCKQCPPMKKGVS 86

Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGC 197
           YL++G+ +E     G  +  +S VV  +      +    +R C
Sbjct: 87  YLLMGQVEEN---RGPVLPPESFVVLHRPNQDQILTNLSKRKC 126

>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Tissue inhibitor of metalloproteinases, TIMP
domain: TIMP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 97  VGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQC--KCPKIKLNKP 154
                E      + R+ + +  MYK            +++    +  C         ++ 
Sbjct: 23  FVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEE 82

Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
           +LI GK ++G     L +   S V  W       +   QRRG
Sbjct: 83  FLIAGKLQDG----LLHITTCSFVAPWNS-----LSLAQRRG 115

>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Netrin-like domain (NTR/C345C module)
domain: Complement C5 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 96  IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
               I+       +V++   +  +YK       +K +   +I  K + C   ++   + Y
Sbjct: 36  YKVSITSITVENVFVKYKATLLDIYKTGEAVA-EKDSEITFI--KKVTCTNAELVKGRQY 92

Query: 156 LILGKEKE 163
           LI+GKE  
Sbjct: 93  LIMGKEAL 100

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 33  NKQKLVFEQLCINYANEHLQYYFNQHR 59
             Q   FEQL IN+ NE LQ  F +  
Sbjct: 384 VFQNNSFEQLNINFCNEKLQQLFIELT 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	99.95
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	99.95
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	99.94
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	99.94
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	99.93
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	99.92
d1uapa_	131	Procollagen c-proteinase enhancer protein PCOLCE {	99.63
d1xwea_	151	Complement C5 domain {Human (Homo sapiens) [TaxId:	98.98
d2j0td1	124	TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}	98.88

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.95  E-value=2.3e-30  Score=243.48  Aligned_cols=162  Identities=18%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee-----ccccccccc-
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS-----TIVGKISEK-  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde-----gi~~~V~~~-  103 (198)
                      .|+|+.|||||||||||||+||++|++++|..|+    ++|.+|||+|..|+|. ||++|++|++     |++++|++. 
T Consensus       411 FE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq----~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gll~lLdee~  486 (712)
T d1d0xa2         411 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQ----EEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQS  486 (712)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTCC--------CHHHHHHHHHCTTTTCHHHHHHHHH
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhccCCCcccccCCCcHHHHHHHhccCCCcHHHHhHHHh
Confidence            4899999999999999999999999999999865    9999999999999996 9999999975     677777763 


Q ss_pred             -ccchhHHHHHHHHHHhhccC-C---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC-------
Q psy12860        104 -INLKEWVRFTMNIQSMYKRA-P---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG-------  164 (198)
Q Consensus       104 -~~~g~~~~f~~kv~~v~K~~-p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~-------  164 (198)
                       -+.+++..|+.+++..+..+ +   .++.....|+|.||||+|+|++.+|.. |+|.|      +|..+...       
T Consensus       487 ~~~~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl~KNrD~l~~~~~~ll~~S~n~~i~~lf~  566 (712)
T d1d0xa2         487 VFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFN  566 (712)
T ss_dssp             TCTTCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSCTTHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHhccCCcccccccCCCCceeeEecccceeEecchHHHhccchhHHHHHHHHHHCCcHHHHHHhc
Confidence             34556789999998888543 2   344556689999999999999999655 77766      22222110       


Q ss_pred             ----CCCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        165 ----NQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       165 ----~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                          ....+-.....||+.+|+.+|..||..|.+-.
T Consensus       567 ~~~~~~~~~~~~~~~Tv~~~Fk~sL~~Lm~~L~~t~  602 (712)
T d1d0xa2         567 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTN  602 (712)
T ss_dssp             CHHHHCCC-----CCCHHHHHHHHHHHHHHHHHTSE
T ss_pred             CCcccccccCCCCCccHHHHHHHHHHHHHHHHcCCC
Confidence                01222334557999999999999999998643

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=99.95  E-value=7.9e-30  Score=239.04  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=123.8

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|+.++|..|+    ++|..|||+|..|+|.||++|+||++    |++.+|++.  -
T Consensus       382 FE~f~~NsfEQLcINyaNEkLq~~f~~~if~~e~----~~Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~  457 (684)
T d1lkxa_         382 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQ----EEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLI  457 (684)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHS
T ss_pred             CcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHhccCCCCCCCcCCchHHHHHHHhccchHHHHhHHHhcC
Confidence            4899999999999999999999999999999865    99999999999999999999999875    677777762  3


Q ss_pred             cchhHHHHHHHHHHhhccCC---CC-----C-CCCCceEEEEecCccccCCCCccc-Cccee------eecccCC-----
Q psy12860        105 NLKEWVRFTMNIQSMYKRAP---DS-----K-LKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE-----  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~p---~~-----r-i~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~-----  163 (198)
                      +.+++..|+.+++..+..+|   .+     + ...+.|+|.||||+|+|++.++.. |+|.|      +|..+..     
T Consensus       458 ~~~tD~~~l~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl~KN~D~l~~~~~~ll~~S~n~~i~~  537 (684)
T d1lkxa_         458 AKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG  537 (684)
T ss_dssp             TTCCHHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHH
T ss_pred             CCCchHHHHHHHHHHhccCcccccCccCCCCccCCCceEEecccCccccccccHHHhchhhhhHHHHHHHHcCCcHHHHH
Confidence            45667899999998887653   11     1 223469999999999999999765 77765      2222111     


Q ss_pred             --CC-CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 --GN-QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 --~~-~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                        .+ .+..-...+.||+.+|+.+|..||..|.+-.
T Consensus       538 lf~~~~~~~~~~~~~Tv~~~f~~~L~~L~~~L~~t~  573 (684)
T d1lkxa_         538 LFPPTRPEDSKKRPETAGSQFRNAMNALITTLLACS  573 (684)
T ss_dssp             HCC-----------CCHHHHHHHHHHHHHHHHTTSE
T ss_pred             hcCCCCccccCCCCCcHHHHHHHHHHHHHHHHhCCC
Confidence              00 1112234567999999999999999998654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=99.94  E-value=1.1e-29  Score=239.43  Aligned_cols=162  Identities=18%  Similarity=0.205  Sum_probs=123.5

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---ccccccccc--cc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISEK--IN  105 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~~--~~  105 (198)
                      .|+|+.|+|||||||||||+||++|++++|..|+    ++|.+|||+|..|+|.||++|+||++   |++++|++.  -+
T Consensus       379 FE~f~~NsfEQLcINy~NEkLq~~f~~~~F~~e~----~~y~~EgI~~~~i~~~dN~~~l~Li~~~~gil~lLdee~~~~  454 (730)
T d1w7ja2         379 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQ----EEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMP  454 (730)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCGGGCCCCCCHHHHHHHHSTTSHHHHHHHHHTST
T ss_pred             CcccCcccHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCcccCcCCChhHHhhhhccccHHHHhHHhccCC
Confidence            4899999999999999999999999999999855    99999999999999999999999976   567777663  34


Q ss_pred             chhHHHHHHHHHHhhccCC----CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCCC---------
Q psy12860        106 LKEWVRFTMNIQSMYKRAP----DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEGN---------  165 (198)
Q Consensus       106 ~g~~~~f~~kv~~v~K~~p----~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~~---------  165 (198)
                      .+++..|+.+++..+..++    .++.....|+|.||||+|+|++.++.. |+|.|      +|..++..+         
T Consensus       455 ~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~Ssn~~~i~~lf~~~  534 (730)
T d1w7ja2         455 KGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDE  534 (730)
T ss_dssp             TCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC--
T ss_pred             CCchHHHHHHHHHHhcCCCcccCCCCCCCCceEEEEcCCccccccchhHHhhhccccHHHHHHHHhCCChHHHHHHhhcc
Confidence            5567899999977765432    244556689999999999999999655 66655      222111100         


Q ss_pred             ------------C--------------C--CCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        166 ------------Q--------------P--SGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       166 ------------~--------------~--~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                                  +              .  ........||+.+|+.+|..||..|.+-.
T Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fr~sL~~L~~~L~~t~  593 (730)
T d1w7ja2         535 EKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATT  593 (730)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHHHHTSE
T ss_pred             ccccccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHhCCC
Confidence                        0              0  00123447899999999999999998643

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.94  E-value=1.8e-29  Score=237.42  Aligned_cols=162  Identities=20%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee------ccccccccc
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS------TIVGKISEK  103 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde------gi~~~V~~~  103 (198)
                      .|+|+.|+|||||||||||+||++|++++|..|+    ++|..|||+|..|+|. ||++|+||++      |+++++++.
T Consensus       390 FE~f~~NsfEQLcINy~NE~Lq~~f~~~~f~~e~----~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil~lLdee  465 (710)
T d1br2a2         390 FEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQ----EEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEE  465 (710)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHHHHHHHH
T ss_pred             ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcccccccccCCcchhhHHHhccCCCcchhhhhhhh
Confidence            3899999999999999999999999999999855    9999999999999995 9999999975      677888763


Q ss_pred             --ccchhHHHHHHHHHHhhccCC---CCC--CCCCceEEEEecCccccCCCCccc-Cccee------eecccCC------
Q psy12860        104 --INLKEWVRFTMNIQSMYKRAP---DSK--LKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE------  163 (198)
Q Consensus       104 --~~~g~~~~f~~kv~~v~K~~p---~~r--i~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~------  163 (198)
                        -+.+++..|+.+++..+..++   .++  ..+..|+|.||||+|+|++.+|.. |+|.|      +|..+..      
T Consensus       466 ~~~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~l  545 (710)
T d1br2a2         466 CWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADL  545 (710)
T ss_dssp             C----CCHHHHHHHHHHHTTTSTTEEECC-----CEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHhCCCcccCCCcccCCCCceEEEEecccEEEecccHHHhccchhhHHHHHHHHhCCcHHHHHH
Confidence              345667899999988887653   122  234579999999999999999764 77766      2221110      


Q ss_pred             -----C---C----------CCC---CcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 -----G---N----------QPS---GLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 -----~---~----------~~~---~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                           .   .          .+.   .-.....||+.+|+.||..||..|.+-.
T Consensus       546 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tv~~~F~~qL~~L~~~L~~t~  599 (710)
T d1br2a2         546 WKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTN  599 (710)
T ss_dssp             TC------------------------------CCHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhccccccccccccccccccCCCcccccCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence                 0   0          000   0112346899999999999999998643

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.93  E-value=4.6e-28  Score=230.03  Aligned_cols=162  Identities=21%  Similarity=0.232  Sum_probs=118.5

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccc-ee---eccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFE-FK---STIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cid-Ld---egi~~~V~~~--~  104 (198)
                      .|+|+.|||||||||||||+||++|++++|..|+    ++|.+|||+|..|+|.||.++++ ++   .|++++|++.  -
T Consensus       416 FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq----~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~lLdee~~~  491 (789)
T d1kk8a2         416 FEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQ----EEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMF  491 (789)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTC
T ss_pred             ceecCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCccCCCcCCCHHHHHHHHcCCccHHHHHHhhhcC
Confidence            4899999999999999999999999999999865    99999999999999998766555 43   3788888773  3


Q ss_pred             cchhHHHHHHHHHHhhccC-C-----CC----CCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC----
Q psy12860        105 NLKEWVRFTMNIQSMYKRA-P-----DS----KLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE----  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~-p-----~~----ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~----  163 (198)
                      +.+++.+|+.+++..+... +     ..    ....+.|+|.||||+|.|++.+|.. |+|.|      +|..+..    
T Consensus       492 ~~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~l~~ll~~S~n~~i~  571 (789)
T d1kk8a2         492 PKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVA  571 (789)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCccccCCCcccccccCCCceeEeccCCccceeccChHHhhhhhhhHHHHHHHHhCccHHHH
Confidence            4566789999988766432 1     11    1123479999999999999999755 67666      2222111    


Q ss_pred             ----CC--------CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 ----GN--------QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 ----~~--------~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                          .+        ...+......||+.+|+.+|..||..|.+-.
T Consensus       572 ~lf~~~~~~~~~~~~~~~~~~~~~Tv~~~Fr~sL~~L~~~L~~t~  616 (789)
T d1kk8a2         572 ELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTH  616 (789)
T ss_dssp             HHTCC------------------CCHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHhcCccccccccCCCCCCCCCcccHHHHHHHHHHHHHHHHhcCC
Confidence                00        0111222346999999999999999997643

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.92  E-value=1.6e-27  Score=226.29  Aligned_cols=162  Identities=19%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccc-eee---ccccccccc--c
Q psy12860         31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFE-FKS---TIVGKISEK--I  104 (198)
Q Consensus        31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cid-Lde---gi~~~V~~~--~  104 (198)
                      .|+|+.|+|||||||||||+||++|++++|..|+    ++|.+|||+|+.|+|.||..+++ +++   |++++|++.  -
T Consensus       418 FE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq----~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~lLdee~~~  493 (794)
T d2mysa2         418 FEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQ----EEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMF  493 (794)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHHHHHHHTTC
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHHHHHHhccC
Confidence            4899999999999999999999999999999855    99999999999999987755544 443   788888773  3


Q ss_pred             cchhHHHHHHHHHHhhccC-C---CCC----CCCCceEEEEecCccccCCCCccc-Cccee------eecccCC------
Q psy12860        105 NLKEWVRFTMNIQSMYKRA-P---DSK----LKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE------  163 (198)
Q Consensus       105 ~~g~~~~f~~kv~~v~K~~-p---~~r----i~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~------  163 (198)
                      +.+++.+|+.+++..+... +   .+.    .....|+|.||||+|+|++.++.. |+|.|      ++..+..      
T Consensus       494 ~~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~l  573 (794)
T d2mysa2         494 PKATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALL  573 (794)
T ss_dssp             TTCCHHHHHHHHHHHHBTTBSSEECCCCC---CCCSEEEECSSCEEEECCSSHHHHHHCCCCHHHHHHHHTCSSHHHHHH
T ss_pred             ccccHHHHHHHHHHHhcCCCccccCCCccCCCCCCceEEEeeCceeeehhcchHHhccCcccHHHHHHHHhCCCHHHHHh
Confidence            4556789999987665322 1   111    123479999999999999999655 66655      1221111      


Q ss_pred             -----C---CCCC-----CcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860        164 -----G---NQPS-----GLTMNAKSIVVEWKDELHDRMRQFQRRG  196 (198)
Q Consensus       164 -----~---~~~~-----~l~~~~~Svv~~wk~sl~~lm~~l~r~~  196 (198)
                           .   ...+     +-.....||+.+|+.+|..||..|.+-.
T Consensus       574 f~~~~~~~~~~~~~~~~~~~~~~~~Tv~~~fr~sL~~L~~~L~~t~  619 (794)
T d2mysa2         574 FATYGGEAEGGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTH  619 (794)
T ss_dssp             TSCC--------------------CCSHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhcccccccccCCcCCCCCCCccccHHHHHHHHHHHHHHHHhcCC
Confidence                 0   0000     1122346899999999999999998643

>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein PCOLCE {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Netrin-like domain (NTR/C345C module)
domain: Procollagen c-proteinase enhancer protein PCOLCE
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-18  Score=128.29  Aligned_cols=101  Identities=18%  Similarity=0.279  Sum_probs=88.1

Q ss_pred             eeccccccccc-ccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcc
Q psy12860         93 KSTIVGKISEK-INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLT  171 (198)
Q Consensus        93 degi~~~V~~~-~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~  171 (198)
                      ||||.+.|.+. +..|+|..|+++|.++||.+ ..+++++...+|+...+..|.||.|.+|.+|||||+.+.   .++++
T Consensus        25 dfvi~~~V~~~~~~~~~~~~~~v~v~~v~K~~-~~~i~~~~~~l~v~~~~~~C~CP~L~~g~~YLImG~~~~---~g~~~  100 (131)
T d1uapa_          25 SLVVTATVKSMVREPGEGLAVTVSLIGAYKTG-GLDLPSPPTGASLKFYVPCKQCPPMKKGVSYLLMGQVEE---NRGPV  100 (131)
T ss_dssp             SEEEEEEEEEEEECSTTCEEEEECCCEEEEET-TCCCCSSCSCCCEEEEESCSSSSCCCTTCEEEEEEEEET---TTEEE
T ss_pred             cEEEEEEEEEEEecCCceEEEEEEEEEEEecC-ccccccCCeEEEEEcCCCCCCCCcccCCCeEEEEEEEcC---CCcEE
Confidence            79999999885 45677889999999999987 567777766777777788999999999999999998654   24789


Q ss_pred             cCcceeEEechHHHHHHHHHHHHhcC
Q psy12860        172 MNAKSIVVEWKDELHDRMRQFQRRGC  197 (198)
Q Consensus       172 ~~~~Svv~~wk~sl~~lm~~l~r~~~  197 (198)
                      +++.|+|.+|++.|+++|+.|++++|
T Consensus       101 l~~~s~v~~w~~~~~r~l~~l~kk~C  126 (131)
T d1uapa_         101 LPPESFVVLHRPNQDQILTNLSKRKC  126 (131)
T ss_dssp             CCTTCEEEECCHHHHHHHHHHHHSCC
T ss_pred             ECccceEEEcCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999

>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Netrin-like domain (NTR/C345C module)
domain: Complement C5 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.4e-11  Score=92.31  Aligned_cols=94  Identities=15%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             Cccccc-eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCC
Q psy12860         86 GGWRFE-FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG  164 (198)
Q Consensus        86 N~~cid-Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~  164 (198)
                      +..|-. +|||+.+.|.+....++|..|+++|..|+|.+ ...+.+|.  ..+|.....|.||+|.+|++|||||.+...
T Consensus        25 ~~AC~~~vDYvykv~V~~~~~~~~~~~y~~~I~~V~K~g-~d~~~~g~--~r~f~~~~~C~~~~L~~gk~YLIMG~~~~~  101 (151)
T d1xwea_          25 QTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTG-EAVAEKDS--EITFIKKVTCTNAELVKGRQYLIMGKEALQ  101 (151)
T ss_dssp             TTTSSTTCCEEEEEEEEEEEECSSEEEEEEEEEEEEECC-TTTCCSSC--EEEEEEETTCSSCCCCTTCEEEEEECCCCC
T ss_pred             HhhCCCCCCEEEEEEEEEEEecCCEEEEEEEEEEEeecc-cccccCCC--EEEEEEcCCCCCCCccCCCEEEEeeccccc
Confidence            456642 68999999999888888999999999999988 44555664  223334558999999999999999986552


Q ss_pred             CC---CC--CcccCcceeEEech
Q psy12860        165 NQ---PS--GLTMNAKSIVVEWK  182 (198)
Q Consensus       165 ~~---~~--~l~~~~~Svv~~wk  182 (198)
                      ..   ..  .+.++..|+|..|.
T Consensus       102 ~~~~~~~~Y~y~Ld~~TwVE~WP  124 (151)
T d1xwea_         102 IKYNASFRYIYPLDSLTWIEYWP  124 (151)
T ss_dssp             CCSSSSCCCCBCCCSSSEEEEEC
T ss_pred             cccCCceEEEEEcCCceEEEECC
Confidence            21   12  24589999999996

>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: TIMP-like
family: Tissue inhibitor of metalloproteinases, TIMP
domain: TIMP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.8e-11  Score=86.86  Aligned_cols=93  Identities=16%  Similarity=0.246  Sum_probs=71.1

Q ss_pred             eeecccccccccccch---hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCcccc--CCCCcccCcceeeecccCCCCC
Q psy12860         92 FKSTIVGKISEKINLK---EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQC--KCPKIKLNKPYLILGKEKEGNQ  166 (198)
Q Consensus        92 Ldegi~~~V~~~~~~g---~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y--~cp~L~~~r~yLIlg~~~~~~~  166 (198)
                      -||||.+.|.+....+   .|.+|.++|.++||.++.....++.-.||..+.+..|  .||.|.+|++|||+|..++   
T Consensus        15 sDfVi~akV~~~~~~~~~~~~~~y~v~v~kv~K~~~~~~~~~~~~~l~tp~~~~~CG~~~~~l~~g~~YLI~G~~~~---   91 (124)
T d2j0td1          15 SDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQD---   91 (124)
T ss_dssp             CSEEEEEEECSSCEEETTTTEEEEEEEEEECSSCSSCSSCCCCCSEEEEESCGGGTCCCCCCSCSSCEEEEEEEEET---
T ss_pred             cCEEEEEEEeeccccCCCcceEEEEEEEEEEEcCCcccccccCceEEEecCccCccCccCcccCCCCeEEEEEEecC---
Confidence            3789999987754332   3778999999999976333444555568888888888  7789999999999998543   


Q ss_pred             CCCcccCcceeEEechHHHHHH
Q psy12860        167 PSGLTMNAKSIVVEWKDELHDR  188 (198)
Q Consensus       167 ~~~l~~~~~Svv~~wk~sl~~l  188 (198)
                       +++.++.-|++.+|++-....
T Consensus        92 -g~l~v~~cs~v~~W~~lt~~q  112 (124)
T d2j0td1          92 -GLLHITTCSFVAPWNSLSLAQ  112 (124)
T ss_dssp             -TEEECCTTSEEEEGGGSCHHH
T ss_pred             -CcEEEecCceEEEhHHCCHHH
Confidence             478899999999998844433