Psyllid ID: psy12863


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDENTTSITQSSQ
cEEEcccccccccccccEEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHccccccEEccccccccHHHEEEEEcccccccHHHHHHHccccccccccEEEEEEEccEEEEEEEEEcccccEEEEEEEEEEccccccccccc
cEEEEccccHHHHcccccEEEccccccccccccEEEEEccccccccccHHHHHHHHHccccccEEHHccHHHHHHHHHHHHHccccccccccccHHHcccccccHHHHHHHHHHccccEEEEEEccccEEEEEEEEEEEcccccEccccc
ryvlrnsvhcfsyIDNNLHITNWkrslgckcqyrhvvdwcgcspndfrssdysRLVATKGKQlyfarkfepvvnqdihlevsssydqkeQMSRDFLhaigpysepvlIHEWLTLVTHNItylwidptnvlAAVTRVQVdenttsitqssq
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSpndfrssdysRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVdenttsitqssq
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDENTTSITQSSQ
**VLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVS**********RDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQV************
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSD************YFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQ*************
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVD***********
RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDENT********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RYVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDENTTSITQSSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
Q7KVA1 876 Xylosyltransferase oxt OS yes N/A 0.406 0.069 0.696 3e-31
Q5QQ53 880 Xylosyltransferase oxt OS yes N/A 0.48 0.081 0.670 1e-30
Q5QQ56 950 Xylosyltransferase 1 OS=C yes N/A 0.493 0.077 0.64 1e-25
Q86Y38 959 Xylosyltransferase 1 OS=H yes N/A 0.493 0.077 0.64 5e-25
Q5QQ57 945 Xylosyltransferase 1 OS=P yes N/A 0.493 0.078 0.64 5e-25
Q811B1 953 Xylosyltransferase 1 OS=M yes N/A 0.533 0.083 0.592 6e-25
Q9EPI1 821 Xylosyltransferase 1 (Fra no N/A 0.533 0.097 0.592 7e-25
Q9EPL0 865 Xylosyltransferase 2 OS=M no N/A 0.64 0.110 0.5 4e-24
Q5QQ50 865 Xylosyltransferase 2 OS=C no N/A 0.513 0.089 0.594 5e-24
Q5QQ51 865 Xylosyltransferase 2 OS=P no N/A 0.513 0.089 0.582 5e-24
>sp|Q7KVA1|XYLT_DROME Xylosyltransferase oxt OS=Drosophila melanogaster GN=oxt PE=2 SV=1 Back     alignment and function desciption
 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 67/79 (84%)

Query: 3   VLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQ 62
           VLRN+ HC SY+DNNLH+TNWKR  GCKCQY+HVVDWCGCSPNDF+  D+ RL AT+ K 
Sbjct: 458 VLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPNDFKPEDWPRLQATEQKS 517

Query: 63  LYFARKFEPVVNQDIHLEV 81
           L+FARKFEPV+NQ + L++
Sbjct: 518 LFFARKFEPVINQAVLLQL 536




Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6
>sp|Q5QQ53|XYLT_DROPS Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ56|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q86Y38|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1 Back     alignment and function description
>sp|Q5QQ57|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q811B1|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1 Back     alignment and function description
>sp|Q9EPI1|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1 Back     alignment and function description
>sp|Q9EPL0|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3 Back     alignment and function description
>sp|Q5QQ50|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ51|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
195095248 621 GH10790 [Drosophila grimshawi] gi|193905 0.493 0.119 0.666 4e-30
195016732 884 GH16481 [Drosophila grimshawi] gi|193897 0.48 0.081 0.683 5e-30
87080449 674 protein-O-xylosyltransferase [Drosophila 0.493 0.109 0.666 6e-30
195377291 885 oxt [Drosophila virilis] gi|194154582|gb 0.406 0.068 0.683 7e-30
194746864 879 oxt [Drosophila ananassae] gi|190623156| 0.406 0.069 0.696 1e-29
87080439 868 protein-O-xylosyltransferase [Drosophila 0.406 0.070 0.696 1e-29
87080441 876 protein-O-xylosyltransferase [Drosophila 0.406 0.069 0.696 2e-29
87080453 874 protein-O-xylosyltransferase [Drosophila 0.48 0.082 0.696 2e-29
195587164 876 oxt [Drosophila simulans] gi|194195344|g 0.406 0.069 0.696 2e-29
195493016 876 oxt [Drosophila yakuba] gi|194180339|gb| 0.48 0.082 0.696 2e-29
>gi|195095248|ref|XP_001997834.1| GH10790 [Drosophila grimshawi] gi|193905698|gb|EDW04565.1| GH10790 [Drosophila grimshawi] Back     alignment and taxonomy information
 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 69/81 (85%)

Query: 3   VLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQ 62
           VLRN+ HC SY+DNNLH+TNWKR  GCKCQY+HVVDWCGCSPNDF+  D++RL+AT+ K 
Sbjct: 200 VLRNTQHCHSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPNDFKPEDWARLLATEQKS 259

Query: 63  LYFARKFEPVVNQDIHLEVSS 83
           L+FARKFEP++NQ + L++  
Sbjct: 260 LFFARKFEPIINQAVLLQLEE 280




Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195016732|ref|XP_001984473.1| GH16481 [Drosophila grimshawi] gi|193897955|gb|EDV96821.1| GH16481 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|87080449|emb|CAJ76261.1| protein-O-xylosyltransferase [Drosophila virilis] Back     alignment and taxonomy information
>gi|195377291|ref|XP_002047424.1| oxt [Drosophila virilis] gi|194154582|gb|EDW69766.1| oxt [Drosophila virilis] Back     alignment and taxonomy information
>gi|194746864|ref|XP_001955874.1| oxt [Drosophila ananassae] gi|190623156|gb|EDV38680.1| oxt [Drosophila ananassae] Back     alignment and taxonomy information
>gi|87080439|emb|CAJ76256.1| protein-O-xylosyltransferase [Drosophila ananassae] Back     alignment and taxonomy information
>gi|87080441|emb|CAJ76257.1| protein-O-xylosyltransferase [Drosophila erecta] Back     alignment and taxonomy information
>gi|87080453|emb|CAJ76263.1| protein-O-xylosyltransferase [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195587164|ref|XP_002083335.1| oxt [Drosophila simulans] gi|194195344|gb|EDX08920.1| oxt [Drosophila simulans] Back     alignment and taxonomy information
>gi|195493016|ref|XP_002094238.1| oxt [Drosophila yakuba] gi|194180339|gb|EDW93950.1| oxt [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
UNIPROTKB|F1RLT2 839 XYLT1 "Uncharacterized protein 0.493 0.088 0.653 6.1e-34
RGD|620093 821 Xylt1 "xylosyltransferase 1" [ 0.493 0.090 0.626 1.2e-33
UNIPROTKB|Q9EPI1 821 Xylt1 "Xylosyltransferase 1" [ 0.493 0.090 0.626 1.2e-33
ZFIN|ZDB-GENE-111017-2 919 xylt1 "xylosyltransferase I" [ 0.493 0.080 0.653 1.4e-33
UNIPROTKB|F1NXX8 655 XYLT1 "Uncharacterized protein 0.493 0.112 0.64 2.5e-33
UNIPROTKB|F1PB62 827 XYLT1 "Xylosyltransferase 1" [ 0.493 0.089 0.64 3.2e-33
MGI|MGI:2444797 865 Xylt2 "xylosyltransferase II" 0.513 0.089 0.594 5e-33
UNIPROTKB|Q9H1B5 865 XYLT2 "Xylosyltransferase 2" [ 0.513 0.089 0.582 5.1e-33
UNIPROTKB|Q5QQ56 950 XYLT1 "Xylosyltransferase 1" [ 0.493 0.077 0.64 5.1e-33
MGI|MGI:2451073 953 Xylt1 "xylosyltransferase 1" [ 0.493 0.077 0.626 5.2e-33
UNIPROTKB|F1RLT2 XYLT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 286 (105.7 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
 Identities = 49/75 (65%), Positives = 57/75 (76%)

Query:     3 VLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQ 62
             VL NS HC S +DNNL ITNW R LGCKCQY+H+VDWCGCSPNDF+  D+ R   T  + 
Sbjct:   415 VLENSPHCDSMVDNNLRITNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQT-ARP 473

Query:    63 LYFARKFEPVVNQDI 77
              +FARKFE VVNQ+I
Sbjct:   474 TFFARKFEAVVNQEI 488


GO:0030158 "protein xylosyltransferase activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA
GO:0006024 "glycosaminoglycan biosynthetic process" evidence=IEA
RGD|620093 Xylt1 "xylosyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9EPI1 Xylt1 "Xylosyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-111017-2 xylt1 "xylosyltransferase I" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXX8 XYLT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB62 XYLT1 "Xylosyltransferase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2444797 Xylt2 "xylosyltransferase II" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H1B5 XYLT2 "Xylosyltransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5QQ56 XYLT1 "Xylosyltransferase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2451073 Xylt1 "xylosyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5QQ53XYLT_DROPS2, ., 4, ., 2, ., 2, 60.67080.480.0818yesN/A
Q5QQ55XYLT_CIOIN2, ., 4, ., 2, ., 2, 60.5250.50660.0896yesN/A
Q5QQ57XYLT1_PANTR2, ., 4, ., 2, ., 2, 60.640.49330.0783yesN/A
Q5QQ56XYLT1_CANFA2, ., 4, ., 2, ., 2, 60.640.49330.0778yesN/A
Q86Y38XYLT1_HUMAN2, ., 4, ., 2, ., 2, 60.640.49330.0771yesN/A
Q7KVA1XYLT_DROME2, ., 4, ., 2, ., 2, 60.69620.40660.0696yesN/A
Q811B1XYLT1_MOUSE2, ., 4, ., 2, ., 2, 60.59250.53330.0839yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
pfam12529142 pfam12529, Xylo_C, Xylosyltransferase C terminal 5e-17
>gnl|CDD|221621 pfam12529, Xylo_C, Xylosyltransferase C terminal Back     alignment and domain information
 Score = 72.4 bits (178), Expect = 5e-17
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 78  HLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEW-LTLVTHNITYLWIDPTNVLAAV 133
           +LEV + +D KEQ+ R+F   +GP  E VL+  W        +T +WIDP NV+A  
Sbjct: 86  NLEVGTDWDPKEQIFRNFGGLLGPNDELVLVQRWARGPDNLTVTVVWIDPLNVIADS 142


This domain family is found in eukaryotes, and is typically between 169 and 183 amino acids in length. The family is found in association with pfam02485. There is a single completely conserved residue G that may be functionally important. Xylosyltransferases are enzymes involved in the biosynthesis of the glycosaminoglycan linker region in proteoglycans. Length = 142

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PF12529178 Xylo_C: Xylosyltransferase C terminal ; InterPro: 99.92
PLN03183421 acetylglucosaminyltransferase family protein; Prov 99.32
KOG0799|consensus439 98.12
>PF12529 Xylo_C: Xylosyltransferase C terminal ; InterPro: IPR024448 This entry represents a family of metazoan xylosyltransferases, which includes xylosyltransferase 1 and xylosyltransferase 2 Back     alignment and domain information
Probab=99.92  E-value=3.8e-26  Score=183.13  Aligned_cols=56  Identities=45%  Similarity=0.804  Sum_probs=54.9

Q ss_pred             EEEEcCCcchhhhhhhccccCCCCCCcceEEEEeccccceEEEEEEECCCCceeee
Q psy12863         78 HLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAV  133 (150)
Q Consensus        78 ~~~vgtd~D~KE~i~Rnf~g~lgp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~  133 (150)
                      ++|||||||+||||||||||+|||+|+|+++|+|++|+++++||+||||.|+|||+
T Consensus       123 ~leVGTd~D~KE~ifRnf~gllgp~dep~~~~~w~~~~~~~~tv~WiDP~~~va~~  178 (178)
T PF12529_consen  123 SLEVGTDWDPKEQIFRNFGGLLGPNDEPVLVQRWARGPNFNVTVVWIDPTGVVADT  178 (178)
T ss_pred             EEEeecccCHHHHHHHhhccccCCCCceEEEEEEcCCCCceEEEEEECCCCccccC
Confidence            89999999999999999999999999999999999999999999999999999985



These enzymes initiate the biosynthesis of glycosaminoglycan chains in proteoglycans by transferring xylose from UDP-xylose to specific serine residues of the core protein [].; GO: 0030158 protein xylosyltransferase activity, 0006024 glycosaminoglycan biosynthetic process

>PLN03183 acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information
>KOG0799|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 6e-05
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 2   YVLRNSVHCFSYIDNNLHITNWKRSLG--------CKCQYRHVVDWCGCSPNDFRSSDYS 53
               ++ +  S ++       W+   G          C   HV   C     D       
Sbjct: 298 SFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLS----- 352

Query: 54  RLVATKGKQLYFARKFEPVVNQDI 77
                  +   FA KF+  V+   
Sbjct: 353 ---WMLRQHHLFANKFDMDVDPFA 373


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 99.26
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Back     alignment and structure
Probab=99.26  E-value=1.1e-12  Score=112.29  Aligned_cols=69  Identities=23%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             CeeeecCC----------cccccccCceeEEeccCCCC--------CccccceeeeccCCCCCCCCcchHHHHHhhcCCc
Q psy12863          1 RYVLRNSV----------HCFSYIDNNLHITNWKRSLG--------CKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQ   62 (150)
Q Consensus         1 ~TvL~NS~----------fC~t~v~nNLR~tnW~Rk~G--------C~Cqyk~iVDWcGCSP~~fr~~D~~rl~~~~~~~   62 (150)
                      ||++.|+.          |+.+.++.|||+++|.+..|        ++||++|+++||.     |..+|+.+|.+   ++
T Consensus       287 qTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~-----~~~~Dl~~l~~---s~  358 (391)
T 2gak_A          287 ATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCV-----FGAGDLSWMLR---QH  358 (391)
T ss_dssp             HHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEE-----CCGGGHHHHTT---SC
T ss_pred             HHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceee-----ecHHHHHHHHh---CC
Confidence            46666653          45666799999999986443        8999999999996     77889999987   89


Q ss_pred             eeEEeccCcccccee
Q psy12863         63 LYFARKFEPVVNQDI   77 (150)
Q Consensus        63 ~fFARKFe~~v~qei   77 (150)
                      .+|||||++.++..|
T Consensus       359 ~lFARKF~~~~d~~~  373 (391)
T 2gak_A          359 HLFANKFDMDVDPFA  373 (391)
T ss_dssp             CSEEECCCTTTCHHH
T ss_pred             CceEEccCCccCHHH
Confidence            999999999888765




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00