Psyllid ID: psy12900

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MSQSQVLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
cccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccc
ccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEcc
msqsqvlgVSRAELALSQHFTKHVqhsavcrcsflcpfvcvnkgtifkTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYskhphssflyLGSILVDEYATSHCVSGLLDMvqaflpptyailqeedglknhpdtVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIhnnrvlsdkdgkkkavseEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTisqlpkntpagmnaatpEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHmkynysyhhv
MSQSQVLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHnnrvlsdkdgkkkAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
MSQSQVLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
***********AELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVL******************HRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTI********************************YDVGQALKELSRLYRKHMKYNY*****
***SQVLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR*****************DMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLP**************LIEF***********DVGQALKELSRLYRKHMKY****HHV
*********SRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
*****VLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLS*****KKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
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MSQSQVLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYSYHHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q6P2B1923 Transportin-3 OS=Mus musc yes N/A 0.802 0.299 0.486 1e-74
Q9Y5L0923 Transportin-3 OS=Homo sap no N/A 0.802 0.299 0.479 9e-74
Q8K0C1963 Importin-13 OS=Mus muscul no N/A 0.770 0.275 0.234 5e-10
O94829963 Importin-13 OS=Homo sapie no N/A 0.770 0.275 0.234 6e-10
Q5R974963 Importin-13 OS=Pongo abel no N/A 0.770 0.275 0.234 6e-10
Q9JM04963 Importin-13 OS=Rattus nor no N/A 0.770 0.275 0.231 4e-09
A7YWD2963 Importin-13 OS=Bos taurus no N/A 0.776 0.277 0.235 5e-09
Q5ZIC8958 Importin-13 OS=Gallus gal no N/A 0.747 0.268 0.223 5e-08
Q9USZ2955 Uncharacterized protein C yes N/A 0.694 0.250 0.218 4e-05
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1 Back     alignment and function desciption
 Score =  280 bits (716), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/286 (48%), Positives = 191/286 (66%), Gaps = 10/286 (3%)

Query: 48  KTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI 107
           +T   ++ D R++E   RCLR+A+RCVGK  A LL+PLV Q+V +Y  H HS FLYLGSI
Sbjct: 647 ETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSI 706

Query: 108 LVDEYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 166
           LVDEY     C  GLLDM+QA   PT+ +L++++GL+NHPDTVDDLFRL TRF+QR+P+ 
Sbjct: 707 LVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVT 766

Query: 167 FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDM 226
            L S  +  ++Q  I +T LDHR+ANS+VM+F  DLIH   V +D         EEDF++
Sbjct: 767 LLRSQVVIPILQWAIASTTLDHRDANSSVMRFLRDLIHTG-VANDH--------EEDFEL 817

Query: 227 RHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS 286
           R  L+  ++S+ GQ LVS LL  C F L  Y + DVA+VL+E++ VDR    +WL++++ 
Sbjct: 818 RKELIGQVMSQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLK 877

Query: 287 QLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR 332
            LPK T  G    T +QL +FH QVT +E    V  AL++ +RL+R
Sbjct: 878 GLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR 923
Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3 Back     alignment and function description
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3 Back     alignment and function description
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
383865979 955 PREDICTED: transportin-3 [Megachile rotu 0.802 0.289 0.576 9e-90
380021560 950 PREDICTED: transportin-3 [Apis florea] 0.802 0.290 0.559 5e-88
328787847 879 PREDICTED: transportin-3 [Apis mellifera 0.802 0.313 0.559 5e-88
340728386 953 PREDICTED: transportin-3-like [Bombus te 0.825 0.298 0.537 8e-87
156543529 948 PREDICTED: transportin-3-like [Nasonia v 0.802 0.291 0.555 2e-86
350402957 951 PREDICTED: transportin-3-like [Bombus im 0.845 0.305 0.526 4e-86
332024645 887 Transportin-3 [Acromyrmex echinatior] 0.793 0.307 0.555 3e-85
307213698 952 Transportin-3 [Harpegnathos saltator] 0.802 0.289 0.524 2e-84
91080171 936 PREDICTED: similar to transportin [Tribo 0.802 0.294 0.5 2e-80
242016400 925 transportin-3, putative [Pediculus human 0.802 0.298 0.479 2e-76
>gi|383865979|ref|XP_003708449.1| PREDICTED: transportin-3 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  336 bits (862), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 165/286 (57%), Positives = 204/286 (71%), Gaps = 10/286 (3%)

Query: 48  KTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI 107
             C TYQ DA++ME   RCLR+A+RCVGK  AHLLEPLVKQIV LY+ H HS FLYLGSI
Sbjct: 679 NVCTTYQHDAKLMERCCRCLRFAVRCVGKHSAHLLEPLVKQIVQLYAAHQHSCFLYLGSI 738

Query: 108 LVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 166
           LVDEYA  S CVSGLL MV+AFL PT++ILQ++DGLKNHPDTVDDLFRLC RFLQRAPI 
Sbjct: 739 LVDEYAIDSECVSGLLRMVEAFLGPTFSILQQQDGLKNHPDTVDDLFRLCARFLQRAPIP 798

Query: 167 FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDM 226
           FL S  I S++ C ++A  LDHR+AN +VMKFFYDL+H  R   ++          D+ M
Sbjct: 799 FLHSVVIESIIDCALMACSLDHRDANVSVMKFFYDLLHCGRNYENR---------ADYAM 849

Query: 227 RHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS 286
           R  L++ I+ + GQ LV  LL A VFSL +YM++DVADV  EL   +R++ ++WL++ I 
Sbjct: 850 RRELVQSILKEKGQTLVVRLLHASVFSLSSYMLSDVADVFVELSLSNRELLSKWLEEAIK 909

Query: 287 QLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR 332
            +P     G   A PEQL EFH+ VTR+ESA  V  AL+  +RLYR
Sbjct: 910 TMPSQNAGGSPTAQPEQLFEFHNTVTRAESAKSVNHALRNFARLYR 955

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380021560|ref|XP_003694631.1| PREDICTED: transportin-3 [Apis florea] Back     alignment and taxonomy information
>gi|328787847|ref|XP_001121919.2| PREDICTED: transportin-3 [Apis mellifera] Back     alignment and taxonomy information
>gi|340728386|ref|XP_003402506.1| PREDICTED: transportin-3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156543529|ref|XP_001602761.1| PREDICTED: transportin-3-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350402957|ref|XP_003486657.1| PREDICTED: transportin-3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332024645|gb|EGI64842.1| Transportin-3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307213698|gb|EFN89047.1| Transportin-3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|91080171|ref|XP_970238.1| PREDICTED: similar to transportin [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242016400|ref|XP_002428809.1| transportin-3, putative [Pediculus humanus corporis] gi|212513506|gb|EEB16071.1| transportin-3, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
ZFIN|ZDB-GENE-040426-708923 tnpo3 "transportin 3" [Danio r 0.802 0.299 0.5 3.7e-71
UNIPROTKB|C9J7E5957 TNPO3 "Uncharacterized protein 0.802 0.288 0.479 3.7e-70
MGI|MGI:1196412923 Tnpo3 "transportin 3" [Mus mus 0.802 0.299 0.486 2.7e-68
RGD|1308938929 Tnpo3 "transportin 3" [Rattus 0.819 0.303 0.482 7.2e-68
UNIPROTKB|A5D7C4923 TNPO3 "TNPO3 protein" [Bos tau 0.802 0.299 0.479 1.9e-67
UNIPROTKB|E9PFH4857 TNPO3 "Transportin-3" [Homo sa 0.802 0.322 0.479 1.9e-67
UNIPROTKB|Q9Y5L0923 TNPO3 "Transportin-3" [Homo sa 0.802 0.299 0.479 1.9e-67
UNIPROTKB|F1SMQ0921 TNPO3 "Uncharacterized protein 0.755 0.282 0.485 1.1e-64
FB|FBgn0031456932 Trn-SR "Transportin-Serine/Arg 0.796 0.293 0.482 1.8e-64
UNIPROTKB|H9L0A9855 H9L0A9 "Uncharacterized protei 0.424 0.170 0.425 3.5e-36
ZFIN|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 143/286 (50%), Positives = 191/286 (66%)

Query:    48 KTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI 107
             +T   +Q D R++E   RCLR+A+RCVGK  A LL+PLV Q+V +Y  +PHS FLYLGSI
Sbjct:   647 ETLNAHQSDNRIVERCCRCLRFAVRCVGKGSASLLQPLVTQMVSVYQLYPHSCFLYLGSI 706

Query:   108 LVDEYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 166
             LVDEY     C  GLLDM+QA   PT+ +L++ +GL+NHPDTVDDLFRL TRF+QR+P+ 
Sbjct:   707 LVDEYGMEEGCRQGLLDMLQALCMPTFQLLEQPNGLRNHPDTVDDLFRLATRFVQRSPVT 766

Query:   167 FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDM 226
              L+SS I  ++QC I AT LDHR+AN +VMKF  DLIH   V +D         E+DF++
Sbjct:   767 LLSSSIIVHIIQCAIAATTLDHRDANCSVMKFIRDLIHTG-VTNDH--------EDDFEV 817

Query:   227 RHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS 286
             R RL+   + +HGQ LV+ L+  C F L  Y + DVA+VL+E++  DR    +WL+ T+ 
Sbjct:   818 RKRLIGQAMEQHGQQLVNQLINTCCFCLPPYTLPDVAEVLWEIMVFDRPTFCRWLETTLK 877

Query:   287 QLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR 332
              LPK T  G    T +QL +FH QVT +E    V  A++E +RLYR
Sbjct:   878 GLPKETAGGAVTVTHKQLTDFHKQVTSAEECKQVCWAIREFTRLYR 923
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0005643 "nuclear pore" evidence=IEA
UNIPROTKB|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0A9 H9L0A9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
KOG2022|consensus982 100.0
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 99.39
KOG2021|consensus980 97.47
KOG2274|consensus 1005 96.96
KOG2023|consensus 885 95.86
COG51011053 CRM1 Importin beta-related nuclear transport recep 95.49
KOG1248|consensus 1176 94.9
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.46
KOG2171|consensus 1075 94.36
KOG1991|consensus 1010 94.29
KOG4541|consensus748 94.18
KOG2081|consensus 559 93.55
PF03378 435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 92.78
KOG2023|consensus885 90.61
KOG1241|consensus859 88.45
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 87.69
PF08167165 RIX1: rRNA processing/ribosome biogenesis 87.39
KOG1410|consensus1082 87.34
KOG2171|consensus 1075 86.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 85.92
KOG1992|consensus 960 85.41
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 85.34
KOG1824|consensus 1233 84.77
PF10441223 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This e 84.29
KOG1241|consensus 859 82.69
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 80.22
>KOG2022|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.3e-36  Score=296.39  Aligned_cols=282  Identities=15%  Similarity=0.154  Sum_probs=262.1

Q ss_pred             chHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q psy12900         35 LCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDF-AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY  112 (344)
Q Consensus        35 p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~-~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~f  112 (344)
                      |.+.+++++ |+++++++.|.++.+++|+.|...++++++++..| .|++|.+..+++. |...+...-+.+...++..+
T Consensus       695 ~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~  773 (982)
T KOG2022|consen  695 PILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAK  773 (982)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhh
Confidence            788999999 99999999999999999999999999999999988 9999999999998 99999999999999999988


Q ss_pred             cC-CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc-hhhHHHHH-HHHHhcccCcc
Q psy12900        113 AT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQ-CGILATHLDHR  189 (344)
Q Consensus       113 g~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s-~~l~~l~~-~al~~L~~~e~  189 (344)
                      .. +.+.+.+.+.+-...+..+.++++. .+.++||+++.+|++++..+++.|..+.++ +.+..++. ||..+|..+|+
T Consensus       774 ~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~  852 (982)
T KOG2022|consen  774 STVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEP  852 (982)
T ss_pred             hccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCcc
Confidence            77 8888888888888888889899886 589999999999999999999999999885 66777776 99999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHH
Q psy12900        190 EANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYEL  269 (344)
Q Consensus       190 ~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L  269 (344)
                      .++|++++||+.++..+++.+                 ...+.+++.+.|+.|+.+++.|++|..||+.++.+||+|++|
T Consensus       853 ~~i~aa~qF~t~~~~~~~s~~-----------------~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al  915 (982)
T KOG2022|consen  853 TTIRAASQFLTALATYATSHD-----------------LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLAL  915 (982)
T ss_pred             HHHHHHHHHHHHHHhhcccch-----------------hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHH
Confidence            999999999999998876543                 468899999999999999999999999999999999999999


Q ss_pred             HHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhh-cHHHHHHHHHHHHHHhccCccc
Q psy12900        270 ISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYRKHMKYNY  339 (344)
Q Consensus       270 ~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~-r~~~~~v~~F~~~cr~~~~~~y  339 (344)
                      +++|+.+++.|+.++| +.|++   |+..+|+++|++|+++++++|++ |.+++.+.+||+.|||+.++.|
T Consensus       916 ~~k~~se~r~wl~~~l-q~~gf---Ps~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~~l~~s~~  982 (982)
T KOG2022|consen  916 NAKFFSETRTWLKAVL-QIPGF---PSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACTGLPNSIG  982 (982)
T ss_pred             HHhhhHHHHHHHHHHh-cCCCC---CcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999 67888   78899999999999999999988 7899999999999999999875

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2021|consensus Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>KOG4541|consensus Back     alignment and domain information
>KOG2081|consensus Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1410|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [] Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
2xwu_B963 Crystal Structure Of Importin 13 - Ubc9 Complex Len 4e-11
2x19_B963 Crystal Structure Of Importin13 - Rangtp Complex Le 1e-09
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 129/303 (42%), Gaps = 38/303 (12%)
Query: 46  IFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG 105
           I K    +  DA+V+E        +++ +  DFA ++  L + +  +YS  P +S L L 
Sbjct: 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLT 747
Query: 106 SILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 161
             LV  +A        +  L  +V +    T  + Q+  G ++HPD VD   +L  + L+
Sbjct: 748 RQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ--GPRDHPDIVDSFMQLLAQALK 802
Query: 162 RAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVS 220
           R P  FL     + +V QC +LA              FF +L+        + G+ ++V 
Sbjct: 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELL-------PRCGEVESVG 855
Query: 221 EEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQW 280
           +            +V + G+ L+  +L+A        +M   AD+L+ L      + + W
Sbjct: 856 K------------VVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMW 903
Query: 281 LQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYRKHMKY 337
           +++ +       P G  +A  +PEQ   F  Q+ R   +   V + +KE + L R     
Sbjct: 904 IKEALQ------PPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGT 957
Query: 338 NYS 340
           +Y+
Sbjct: 958 DYT 960
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
2x1g_F971 Cadmus; transport protein, developmental protein, 8e-41
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-37
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-14
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-10
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
 Score =  151 bits (382), Expect = 8e-41
 Identities = 38/292 (13%), Positives = 98/292 (33%), Gaps = 28/292 (9%)

Query: 46  IFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG 105
             +  E + ++  V+E +   +++AI  +   F  +L+ L   IV  +     +  L + 
Sbjct: 696 FKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEIS 755

Query: 106 SILVDEYATS-HCVSGLLDMVQAFLPPTYAILQE--EDGLKNHPDTVDDLFRLCTRFLQR 162
              +  +     C   +  +++ F+  ++ + +   E    N  DT++  F   T+ +++
Sbjct: 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815

Query: 163 APIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSE 221
            P      +     ++        L    A    ++F    +  +R              
Sbjct: 816 IPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR-------------- 861

Query: 222 EDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWL 281
                 H  + ++V   G+  +   +    +      +   AD+L  +          W+
Sbjct: 862 -----NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWM 916

Query: 282 QDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY-DVGQALKELSRLYR 332
           +  +S     T       T      + + + + +     + Q L E++   R
Sbjct: 917 KSLMSTPNFPTQ----LITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTR 964
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.9
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.83
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.8
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.72
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 99.24
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.24
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 97.75
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 97.14
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 96.72
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 95.95
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 95.81
1qgr_A876 Protein (importin beta subunit); transport recepto 95.7
2x19_B 963 Importin-13; nuclear transport, protein transport; 95.61
1qgr_A876 Protein (importin beta subunit); transport recepto 95.55
2x1g_F 971 Cadmus; transport protein, developmental protein, 95.48
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.84
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 94.77
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 93.75
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 92.5
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 92.27
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 92.04
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 91.7
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 88.53
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 87.73
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 87.49
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 85.42
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 85.21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=6e-38  Score=334.38  Aligned_cols=300  Identities=13%  Similarity=0.219  Sum_probs=256.8

Q ss_pred             HHHHHHHhhhccCccCCC-----CcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHH
Q psy12900         15 ALSQHFTKHVQHSAVCRC-----SFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQ   88 (344)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~   88 (344)
                      ....+.++.+++...+..     +||+.++++++ |++..+++.|..|.+++|++|++++.+++.+|.++.|++|++++.
T Consensus       659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~  738 (971)
T 2x1g_F          659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF  738 (971)
T ss_dssp             HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred             HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence            344566666655433222     68999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccHHHHHHHHHHHhcC-CcchHHHHHHHHHhHHHHHHhhcCC--CCCCCCCchHHHHHHHHHHHHHhCcc
Q psy12900         89 IVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEE--DGLKNHPDTVDDLFRLCTRFLQRAPI  165 (344)
Q Consensus        89 l~~~f~~~~~~~~L~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~PDvved~f~L~~r~l~~~P~  165 (344)
                      +...|+.++++|+||+++.++..||. +.+.+.+.+++..++.+++.++++.  +.++++||++++||+|+.++++++|.
T Consensus       739 l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~  818 (971)
T 2x1g_F          739 IVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ  818 (971)
T ss_dssp             HHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence            99999999999999999999999999 7788899999999999999999873  25678999999999999999999999


Q ss_pred             cccCchh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHH
Q psy12900        166 AFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVS  244 (344)
Q Consensus       166 ~ll~s~~-l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~  244 (344)
                      .++++|. ++.++++++.+++.+|+++.+++++||+.+++....                   .+.+++++.++|+.|+.
T Consensus       819 ~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~-------------------~~~~~~~~~~~g~~l~~  879 (971)
T 2x1g_F          819 VLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRN-------------------HAHVTEVVLATGEQTLY  879 (971)
T ss_dssp             GGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCc-------------------hHHHHHHHHHhHHHHHH
Confidence            9999999 999999999999999999999999999999988421                   24688999999999999


Q ss_pred             HHHHHchhccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhch-hhcHHHHH
Q psy12900        245 NLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQA  323 (344)
Q Consensus       245 ~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~-~~r~~~~~  323 (344)
                      .++.+++|+.||+.+++++++|++|..++|.++++||.+++.. |.+   |+..+++++|++|++++++++ +.|++|+.
T Consensus       880 ~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~-~~~---p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~  955 (971)
T 2x1g_F          880 TAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMST-PNF---PTQLITDADKTRYTALIIKEKVNKRLLQQH  955 (971)
T ss_dssp             HHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTS-SSC---SCSSSCHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcc-cCC---CCCcCCHHHHHHHHHHHHHHHhChHhHHHH
Confidence            9999999999999999999999999999999999999999962 233   445899999999999999886 78999999


Q ss_pred             HHHHHHHHHhccCc
Q psy12900        324 LKELSRLYRKHMKY  337 (344)
Q Consensus       324 v~~F~~~cr~~~~~  337 (344)
                      +++||..|||+.|+
T Consensus       956 ~~~f~~~~r~~~~~  969 (971)
T 2x1g_F          956 LSEMAMKTRGLTEK  969 (971)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHHHHHHcCcccc
Confidence            99999999999886
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 99.38
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.7
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.7
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.39
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.89
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 94.98
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.29
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.25
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.71
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 87.9
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.38
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 84.84
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-10  Score=105.31  Aligned_cols=228  Identities=13%  Similarity=0.200  Sum_probs=190.0

Q ss_pred             HhHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHH
Q psy12900         80 HLLEPLVKQIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRL  155 (344)
Q Consensus        80 pll~~i~~~l~~~f~~~----~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L  155 (344)
                      .++|++++.+..-|..+    +-|-.|.+.+.++...|. ...+.+..+++.+...|+.+++.  ++.+.||.=..||.|
T Consensus        69 ~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~-~~~~~v~~I~~~VFe~Tl~MI~~--df~~yPehR~~ff~L  145 (321)
T d1w9ca_          69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINK--DFEEYPEHRTNFFLL  145 (321)
T ss_dssp             HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHSS--TTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhc--cchhChHHHHHHHHH
Confidence            46788888888888874    336789999999999996 55567888888999999999987  899999999999999


Q ss_pred             HHHHHHhCcccccCc--hhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHH
Q psy12900        156 CTRFLQRAPIAFLTS--SFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKD  233 (344)
Q Consensus       156 ~~r~l~~~P~~ll~s--~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  233 (344)
                      +..+..+|+..++.-  +.+..++++.+-|+...+++....+++-+.+++..-.+++                  ...++
T Consensus       146 L~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~------------------~~~~~  207 (321)
T d1w9ca_         146 LQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE------------------AAAQS  207 (321)
T ss_dssp             HHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCH------------------HHHHH
T ss_pred             HHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhCh------------------HHHHH
Confidence            999999999998754  4689999999999999999999999999999996532221                  24567


Q ss_pred             HHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHh-----------------CHHHHHHHHHHHHhhCCCCCCCCC
Q psy12900        234 IVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISV-----------------DRQVSNQWLQDTISQLPKNTPAGM  296 (344)
Q Consensus       234 ~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~-----------------~~~~~~~Wl~~~l~~lp~~~~~~~  296 (344)
                      ...++...++..++.-+......+..+..+.+|..|...                 ...-.++|+.+.|.+.  +     
T Consensus       208 F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ive~~~i~~~l~~~~~~~n~~~l~e~l~~lL~~~--F-----  280 (321)
T d1w9ca_         208 FYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSA--F-----  280 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHH--C-----
T ss_pred             HHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHccccccccccccccchHHHHHHHHHHHHHHh--C-----
Confidence            888999999999999999899999999999999999752                 1223688999888753  1     


Q ss_pred             CCCCHHHHHHHHHHHHhchhh-cHHHHHHHHHHHHHHhcc
Q psy12900        297 NAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYRKHM  335 (344)
Q Consensus       297 ~~vt~~~k~~F~~~l~~~~~~-r~~~~~v~~F~~~cr~~~  335 (344)
                      +++++++-+.|++.+....+. .+||..+|||-...|..-
T Consensus       281 p~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFLI~~kef~  320 (321)
T d1w9ca_         281 PHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFA  320 (321)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhhhcC
Confidence            158999999999999987655 699999999998887643
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure