Psyllid ID: psy12909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPTR
Secondary Structure (PSIPRED)
cccccHHccccccccEEEEEccHHHHHHHHcccccEEEcccccccccccEEEEcEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccEEEEEEHcHHHHHHHHHHHHHHHHHcEccEEcccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MALIMErskektdlpraygfntfFHSALAEHGYSRVKRWTkklnplfynnhkiptyilvvptr
Flexible Loop (DISEMBL)
malimerskektdlprayGFNTFFHSALAEHGYSRVKRWTKklnplfynnhkiptyilvvptr
Low Complexity Region (SEG)
MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPTR
Disordered region (IsUnstruct)
***************RAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV***
Disordered Region (DISOPRED)
MALI***S***TDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPT*
Disordered Region (DISEMBL)
MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPTR
Disordered Region (DISPRO)
*ALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPTR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVPTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
O42957	568	Ubiquitin-like-specific p	yes	N/A	0.666	0.073	0.571	9e-08
Q5RBB1	645	Sentrin-specific protease	yes	N/A	0.682	0.066	0.568	7e-07
Q9P0U3	644	Sentrin-specific protease	yes	N/A	0.682	0.066	0.568	7e-07
Q09353	697	Sentrin-specific protease	yes	N/A	0.904	0.081	0.368	1e-06
P59110	640	Sentrin-specific protease	yes	N/A	0.682	0.067	0.545	2e-06
Q91ZX6	588	Sentrin-specific protease	no	N/A	0.682	0.073	0.5	0.0004

>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKK 42
           M LI ERSK  + LPR +GFNTFF+++L   GY+ V+RW KK
Sbjct: 402 MNLISERSKIDSSLPRVHGFNTFFYTSLQRRGYAGVRRWAKK 443

A cysteine protease that proteolytically removes the C-terminus of pmt3.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 476 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 518

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 475 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 517

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           + LI +RS   +  P+ Y FNTFF+S +   GY+ VKRWT+K++   ++   +P ++
Sbjct: 526 LQLICDRSNGDSKYPKIYAFNTFFYSNIVSKGYASVKRWTRKVDIFAFDIVLVPVHL 582

Protease that deconjugates smo-1 from targeted proteins and may catalyze the processing of smo-1 to its mature form.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M ++MERSKEK   P  + FNTFF + L   GY  VKRWTKK++
Sbjct: 471 MNMLMERSKEK-GFPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 513

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M L++ERSK K   P  + F+TFF+  L   GY  VKRWTK +N
Sbjct: 419 MNLLVERSK-KQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVN 461

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway (By similarity). Isoform 3 activates transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
242025267	517	sentrin/sumo-specific protease, putative	0.904	0.110	0.508	6e-08
170579699	680	Ulp1 protease family, C-terminal catalyt	0.904	0.083	0.421	3e-07
393906487	224	hypothetical protein LOAG_18372 [Loa loa	0.904	0.254	0.438	6e-07
402590433	483	Ulp1 protease [Wuchereria bancrofti]	0.904	0.118	0.421	8e-07
326426461	1797	hypothetical protein PTSG_00047 [Salping	0.841	0.029	0.452	1e-06
312075488	612	hypothetical protein LOAG_04854 [Loa loa	0.904	0.093	0.438	1e-06
241678633	221	sentrin/sumo-specific protease, putative	0.888	0.253	0.410	1e-06
19112767	568	SUMO deconjugating enzyme Ulp1 [Schizosa	0.666	0.073	0.571	4e-06
341902254	887	hypothetical protein CAEBREN_15613 [Caen	0.904	0.064	0.403	4e-06
301608357	621	PREDICTED: sentrin-specific protease 1-l	0.920	0.093	0.491	6e-06

>gi|242025267|ref|XP_002433047.1| sentrin/sumo-specific protease, putative [Pediculus humanus corporis] gi|212518563|gb|EEB20309.1| sentrin/sumo-specific protease, putative [Pediculus humanus corporis]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           M LIMERSK+ T LP+ Y FNTFF + L   GY+ +KRWTK++N   Y+   IP ++
Sbjct: 348 MNLIMERSKKNTKLPKVYVFNTFFFTKLVSSGYASLKRWTKQVNIFSYDILFIPIHL 404

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170579699|ref|XP_001894945.1| Ulp1 protease family, C-terminal catalytic domain containing protein [Brugia malayi] gi|158598286|gb|EDP36210.1| Ulp1 protease family, C-terminal catalytic domain containing protein [Brugia malayi]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           M LI ERS+   +LP+ Y FN+FF+S L+  GY+ ++RWT+K++   Y    IP ++
Sbjct: 512 MNLICERSQNDENLPKVYAFNSFFYSTLSSKGYASIRRWTRKIDIFSYELLLIPVHL 568

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|393906487|gb|EJD74295.1| hypothetical protein LOAG_18372 [Loa loa]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           M LI ERS+    LP+ Y F++FF+S L+  GY+ VKRWT+K +   Y    IP ++
Sbjct: 56  MNLICERSQNDESLPKVYAFSSFFYSTLSSKGYASVKRWTRKTDIFAYELLLIPVHL 112

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|402590433|gb|EJW84363.1| Ulp1 protease [Wuchereria bancrofti]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           M LI +RS+    LP+ Y FN+FF+S L   GY+ V+RWT+K++   Y    IP ++
Sbjct: 307 MNLICQRSQNDESLPKVYAFNSFFYSTLVSKGYASVRRWTRKIDIFAYELLLIPVHL 363

Source: Wuchereria bancrofti

Species: Wuchereria bancrofti

Genus: Wuchereria

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|326426461|gb|EGD72031.1| hypothetical protein PTSG_00047 [Salpingoeca sp. ATCC 50818]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 1    MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKI 53
            M LI ERS+    LPR + FN+FF+ +L   GY+ V+RWT+K  P  ++  KI
Sbjct: 1624 MGLIFERSRADPSLPRVWLFNSFFYQSLRSSGYASVRRWTRKAKPSVFDYDKI 1676

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|312075488|ref|XP_003140439.1| hypothetical protein LOAG_04854 [Loa loa]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           M LI ERS+    LP+ Y F++FF+S L+  GY+ VKRWT+K +   Y    IP ++
Sbjct: 444 MNLICERSQNDESLPKVYAFSSFFYSTLSSKGYASVKRWTRKTDIFAYELLLIPVHL 500

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|241678633|ref|XP_002412604.1| sentrin/sumo-specific protease, putative [Ixodes scapularis] gi|215506406|gb|EEC15900.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 40/56 (71%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTY 56
           M L++ER+K+ ++LP+ Y FNTFF + +A  G+S V+RWT+K++   Y+   +P +
Sbjct: 49  MNLLVERTKQNSELPKLYAFNTFFFTKMAAEGHSAVRRWTRKVDLFSYDIVLVPLH 104

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19112767|ref|NP_595975.1| SUMO deconjugating enzyme Ulp1 [Schizosaccharomyces pombe 972h-] gi|15214321|sp|O42957.1|ULP1_SCHPO RecName: Full=Ubiquitin-like-specific protease 1 gi|2894265|emb|CAA17063.1| SUMO deconjugating enzyme Ulp1 [Schizosaccharomyces pombe]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKK 42
           M LI ERSK  + LPR +GFNTFF+++L   GY+ V+RW KK
Sbjct: 402 MNLISERSKIDSSLPRVHGFNTFFYTSLQRRGYAGVRRWAKK 443

Source: Schizosaccharomyces pombe 972h-

Species: Schizosaccharomyces pombe

Genus: Schizosaccharomyces

Family: Schizosaccharomycetaceae

Order: Schizosaccharomycetales

Class: Schizosaccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|341902254|gb|EGT58189.1| hypothetical protein CAEBREN_15613 [Caenorhabditis brenneri]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
           + LI +RS +  + P+ Y FNTFF++ + E GY+ VKRWTKK++   Y    +P ++
Sbjct: 360 LQLICDRSVQNREYPKTYAFNTFFYTNIIEKGYTSVKRWTKKVDLFSYEIILVPVHL 416

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|301608357|ref|XP_002933743.1| PREDICTED: sentrin-specific protease 1-like [Xenopus (Silurana) tropicalis]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILV 59
           M LIMERSK K  LP+ + FNTFF + L   GY  VKRWTKK++    N   +P ++ V
Sbjct: 452 MNLIMERSKRK-GLPKVHAFNTFFFTKLKSAGYQAVKRWTKKVDIFSMNILLVPIHLGV 509

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
POMBASE|SPBC19G7.09	568	ulp1 "SUMO deconjugating enzym	0.666	0.073	0.571	1.4e-07
ZFIN|ZDB-GENE-030131-6462	729	si:dkey-21c19.3 "si:dkey-21c19	0.888	0.076	0.473	2e-07
UNIPROTKB|F1NYU6	247	F1NYU6 "Uncharacterized protei	0.714	0.182	0.531	2.7e-07
UNIPROTKB|H9L083	612	SENP1 "Uncharacterized protein	0.682	0.070	0.590	3.4e-07
UNIPROTKB|Q9P0U3	644	SENP1 "Sentrin-specific protea	0.888	0.086	0.456	4.7e-07
UNIPROTKB|F1MG84	645	SENP1 "Uncharacterized protein	0.888	0.086	0.456	4.7e-07
UNIPROTKB|Q5RBB1	645	SENP1 "Sentrin-specific protea	0.888	0.086	0.456	4.7e-07
UNIPROTKB|F1PUE6	646	SENP1 "Uncharacterized protein	0.888	0.086	0.456	4.7e-07
UNIPROTKB|F1SGU9	628	SENP1 "Uncharacterized protein	0.888	0.089	0.438	7.4e-07
UNIPROTKB|E1BYD7	454	E1BYD7 "Uncharacterized protei	0.714	0.099	0.531	9.6e-07

POMBASE|SPBC19G7.09 ulp1 "SUMO deconjugating enzyme Ulp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKK 42
             M LI ERSK  + LPR +GFNTFF+++L   GY+ V+RW KK
Sbjct:   402 MNLISERSKIDSSLPRVHGFNTFFYTSLQRRGYAGVRRWAKK 443

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006997 "nucleus organization" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=IC

GO:0016926 "protein desumoylation" evidence=IMP

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

ZFIN|ZDB-GENE-030131-6462 si:dkey-21c19.3 "si:dkey-21c19.3" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/57 (47%), Positives = 37/57 (64%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M L++ERSK+  DLP AY FNTFF   L   GYS V+RWTKK++    +   +P ++
Sbjct:   559 MNLLVERSKQP-DLPSAYTFNTFFFPKLRSSGYSAVRRWTKKVDIFSVDLILVPVHL 614

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLF 47
             M L+MER K K + PR Y F+TFF+  L   GY  VKRWT+ +N LF
Sbjct:    78 MNLLMERGK-KDNYPRVYAFSTFFYPKLLSEGYRAVKRWTRNVN-LF 122

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|H9L083 SENP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 26/44 (59%), Positives = 31/44 (70%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
             M L+MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct:   443 MNLLMERSKEK-GLPTVHAFNTFFFTKLKTAGYQAVKRWTKKVD 485

GO:0006508 "proteolysis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P ++
Sbjct:   475 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL 530

GO:0006508 "proteolysis" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0097190 "apoptotic signaling pathway" evidence=IMP

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1MG84 SENP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P ++
Sbjct:   476 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL 531

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q5RBB1 SENP1 "Sentrin-specific protease 1" [Pongo abelii (taxid:9601)]

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P ++
Sbjct:   476 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL 531

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

UNIPROTKB|F1PUE6 SENP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P ++
Sbjct:   477 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL 532

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
             M ++MERSKEK  +P  + FNTFF + L   GY  VKRWTKK++    +   +P ++
Sbjct:   459 MNMLMERSKEK-GMPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL 514

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query:     1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLF 47
             M L+MER K K + PR Y F+TFF+  L   GY  VKRWT+ +N LF
Sbjct:   285 MNLLMERGK-KDNYPRVYAFSTFFYPKLLSEGYRAVKRWTRNVN-LF 329

GO:0006508 "proteolysis" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P0U3	SENP1_HUMAN	3, ., 4, ., 2, 2, ., 6, 8	0.5681	0.6825	0.0667	yes	N/A
P59110	SENP1_MOUSE	3, ., 4, ., 2, 2, ., 6, 8	0.5454	0.6825	0.0671	yes	N/A
O42957	ULP1_SCHPO	3, ., 4, ., 2, 2, ., 6, 8	0.5714	0.6666	0.0739	yes	N/A
Q5RBB1	SENP1_PONAB	3, ., 4, ., 2, 2, ., 6, 8	0.5681	0.6825	0.0666	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	5e-09

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M L+ + SK  +   + + FNTFF++ L+  GYS V+RWTKK +
Sbjct: 406 MKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTD 449

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
KOG0778|consensus	511		99.94
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.84
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.74
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.09
KOG0779|consensus	595		98.17
KOG3246|consensus	223		87.72

>KOG0778|consensus

Probab=99.94  E-value=4.3e-28  Score=184.41  Aligned_cols=60  Identities=40%  Similarity=0.629  Sum_probs=58.7

Q ss_pred             CcchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909          1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      |+||+||+++++++|+||+||||||++|.++||++|+|||+++|||++|+|+||||+++|
T Consensus       343 m~ll~ers~~~~~yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~~d~i~vPIH~~vH  402 (511)
T KOG0778|consen  343 MELLKERSKKDSKYPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFDKDIIFVPIHLGVH  402 (511)
T ss_pred             HHHHHhhccccCCCceEEEEechhhhhhhhcchHHHHhHhhccCccccceeEeeeecCce
Confidence            789999999999999999999999999999999999999999999999999999999987

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=8e-22  Score=151.15  Aligned_cols=60  Identities=37%  Similarity=0.491  Sum_probs=56.2

Q ss_pred             CcchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909          1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      |++|.++++.....++||+||||||++|.+.||++|+|||+++|||++|+|+||||+..|
T Consensus       406 ~k~ls~~sk~~s~~~~vh~FnTFFYT~LsrrGy~gVrrW~kk~dif~~k~I~iPIni~~H  465 (578)
T COG5160         406 MKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTDIFSKKYIFIPINISYH  465 (578)
T ss_pred             HHHHHHhccCcccccceEEeehhhHHHHHHHHhHHHHHHHhccCccccceEEEEecccce
Confidence            678888888877789999999999999999999999999999999999999999999765

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.74  E-value=1.2e-18  Score=132.51  Aligned_cols=60  Identities=25%  Similarity=0.427  Sum_probs=53.3

Q ss_pred             CcchhhhhccCCC-CCeEEEEccHhHHHHhhc----cccchhhhhhc----cCcccCCeEEEeccCCcc
Q psy12909          1 MALIMERSKEKTD-LPRAYGFNTFFHSALAEH----GYSRVKRWTKK----LNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         1 m~Li~eRs~~~~~-~~~~~~fntFFy~~L~~~----gy~~V~RWtk~----vdlf~~d~I~iPI~~~~~   60 (63)
                      |+||.+|++.+++ .+++|+||||||++|.+.    ||++|+|||++    ++||++|+||||||.++|
T Consensus       313 m~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~n~H  381 (490)
T PLN03189        313 LELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQEIH  381 (490)
T ss_pred             HHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhhcccccccccCceEEeeeecCCe
Confidence            5789999877664 689999999999999986    89999999974    579999999999999877

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.09  E-value=5.5e-11  Score=77.52  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=46.5

Q ss_pred             cchhhhhcc-CCCCCeEEEEccHhHHHHh--------------------hccccchhhhhhcc---CcccCCeEEEeccC
Q psy12909          2 ALIMERSKE-KTDLPRAYGFNTFFHSALA--------------------EHGYSRVKRWTKKL---NPLFYNNHKIPTYI   57 (63)
Q Consensus         2 ~Li~eRs~~-~~~~~~~~~fntFFy~~L~--------------------~~gy~~V~RWtk~v---dlf~~d~I~iPI~~   57 (63)
                      ++|.++... ....+++++|+|||+++|.                    +..+.++.+|+++.   +++++|+|++|||.
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~iPin~   92 (216)
T PF02902_consen   13 EYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNLFDKDYIFIPINI   92 (216)
T ss_dssp             HHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTGGGSSEEEEEEEE
T ss_pred             HHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccccccCEEEEEEec
Confidence            345544322 2235799999999999999                    56789999999987   99999999999999


Q ss_pred             -Ccc
Q psy12909         58 -LVV   60 (63)
Q Consensus        58 -~~~   60 (63)
                       +.|
T Consensus        93 ~~~H   96 (216)
T PF02902_consen   93 NNNH   96 (216)
T ss_dssp             TTTE
T ss_pred             hhhc
Confidence             765

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG0779|consensus

Probab=98.17  E-value=6.1e-07  Score=69.79  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             CCeEEEEccHhHHHHhh------------ccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909         14 LPRAYGFNTFFHSALAE------------HGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus        14 ~~~~~~fntFFy~~L~~------------~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      .+.+|+|+||||..|.+            .....+++|++.+|+|.+++|++|+|...|
T Consensus       392 s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~k~yi~~P~~E~~h  450 (595)
T KOG0779|consen  392 SNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHFDLFNKDYVFVPTHERFH  450 (595)
T ss_pred             CcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeeccccccceeEEecCchHhh
Confidence            47999999999999996            246789999999999999999999997654

>KOG3246|consensus

Probab=87.72  E-value=0.56  Score=33.50  Aligned_cols=18  Identities=11%  Similarity=-0.221  Sum_probs=15.9

Q ss_pred             ccCcccCCeEEEeccCCc
Q psy12909         42 KLNPLFYNNHKIPTYILV   59 (63)
Q Consensus        42 ~vdlf~~d~I~iPI~~~~   59 (63)
                      ..|+++||+||+|||.+.
T Consensus        82 pl~l~~k~~iflpiNDn~   99 (223)
T KOG3246|consen   82 PLDLNDKDFIFLPINDNS   99 (223)
T ss_pred             hhhcCCCceEEEEecCCC
Confidence            359999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	63
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		4e-08
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		5e-08
2iyc_A	226	Senp1 Native Structure Length = 226		7e-08
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		7e-08
2g4d_A	205	Crystal Structure Of Human Senp1 Mutant (C603s) In		7e-08
2iy0_A	226	Senp1 (Mutant) Sumo1 Rangap Length = 226		8e-08
1tgz_A	226	Structure Of Human Senp2 In Complex With Sumo-1 Len		2e-04
2io0_A	232	Crystal Structure Of Human Senp2 In Complex With Pr		2e-04

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 69  MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 111

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 61  MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 103

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
          M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
          M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99

>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
          M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 36 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 78

>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
          M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99

>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
          M L++ER+K K   P  + F+TFF+  L   GY  VKRWTK +N
Sbjct: 57 MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 99

>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
           M L++ER+K K   P  + F+TFF+  L   GY  VKRWTK +N
Sbjct: 63  MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	63
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	2e-07
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	2e-05
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	4e-04

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 44.4 bits (104), Expect = 2e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P
Sbjct: 69  MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVP 121

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M L++ER+K++   P  + F+TFF+  L   GY  VKRWTK +N        +P
Sbjct: 57  MNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVP 109

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 35.2 bits (79), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 16/62 (25%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSAL----------------AEHGYSRVKRWTKKLN 44
           +  ++        + R++ F++FF+  L                A+  + RV+ WT+ +N
Sbjct: 58  LKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHIN 117

Query: 45  PL 46
             
Sbjct: 118 IF 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	63
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.78
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.71
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.7
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.57
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.34
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.0

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.78  E-value=8.8e-21  Score=136.60  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=43.4

Q ss_pred             CCeEEEEccHhHHHHhhc----------------cccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909         14 LPRAYGFNTFFHSALAEH----------------GYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus        14 ~~~~~~fntFFy~~L~~~----------------gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      .+++|+||||||++|.+.                ||++|+|||+++|||++|+||||||.+.|
T Consensus        71 ~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~H  133 (323)
T 3eay_A           71 VERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSH  133 (323)
T ss_dssp             HHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTE
T ss_pred             cCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCc
Confidence            469999999999999853                68999999999999999999999999877

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.71  E-value=2.5e-18  Score=116.62  Aligned_cols=59  Identities=46%  Similarity=0.718  Sum_probs=52.6

Q ss_pred             CcchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909          1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      |++|.+|+... +.+++|+||||||++|.+.||++|+|||+++|+|++|+|+||||.+.|
T Consensus        69 ~~~L~~~~~~~-~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~~~H  127 (238)
T 2xph_A           69 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVH  127 (238)
T ss_dssp             HHHHHHHTTST-TSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEEEEEEETTE
T ss_pred             HHHHHHhhhhc-CCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCEEEEcccCCCc
Confidence            35677776543 478999999999999999999999999999999999999999999876

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.70  E-value=4.8e-18  Score=114.33  Aligned_cols=58  Identities=36%  Similarity=0.521  Sum_probs=51.6

Q ss_pred             cchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909          2 ALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         2 ~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      ++|.+|...+ +.+++|+||||||++|.+.||++|+|||+++|+|++|+|+||||.+.|
T Consensus        58 ~~L~~~~~~~-~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~~~H  115 (226)
T 1th0_A           58 NLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVH  115 (226)
T ss_dssp             HHHHHHHHHH-TCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEETTE
T ss_pred             HHHHHhhhhc-cCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEEEeEEeCcE
Confidence            5677776443 368999999999999999999999999999999999999999999876

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.57  E-value=1e-15  Score=102.82  Aligned_cols=46  Identities=33%  Similarity=0.549  Sum_probs=43.1

Q ss_pred             CeEEEEccHhHHHHhhccccchhhhhh--ccCcccCCeEEEeccCC-cc
Q psy12909         15 PRAYGFNTFFHSALAEHGYSRVKRWTK--KLNPLFYNNHKIPTYIL-VV   60 (63)
Q Consensus        15 ~~~~~fntFFy~~L~~~gy~~V~RWtk--~vdlf~~d~I~iPI~~~-~~   60 (63)
                      |++|+||||||++|.+.||++|+|||+  ++|+|++|+|+||||.+ .|
T Consensus        66 ~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~H  114 (221)
T 1euv_A           66 PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSH  114 (221)
T ss_dssp             TTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTE
T ss_pred             CCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCCEEEEEEEcCCCe
Confidence            799999999999999999999999998  68999999999999985 55

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.34  E-value=3e-13  Score=89.81  Aligned_cols=54  Identities=6%  Similarity=-0.066  Sum_probs=44.4

Q ss_pred             CcchhhhhccCCCCCeEEEEc---cHhHHHHhhccccchhhhhhccCcccCCeEEEeccC
Q psy12909          1 MALIMERSKEKTDLPRAYGFN---TFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI   57 (63)
Q Consensus         1 m~Li~eRs~~~~~~~~~~~fn---tFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~   57 (63)
                      |++|.++...+. .+++|+||   ||||+.+.  +|++|+||++++|+|++|+||||||.
T Consensus        36 ~~~L~~~~~~~~-~~~~~~~~p~~s~f~~~~~--~~~~v~~~~~~~~l~~~~~i~iPIn~   92 (212)
T 2bkr_A           36 FEYFANSQFHDS-SDHVSFISPEVTQFIKCTS--NPAEIAMFLEPLDLPNKRVVFLAIND   92 (212)
T ss_dssp             HHHHHHTTTGGG-TTTEEEECHHHHHHHHHCC--CHHHHHHHHGGGTGGGCSEEEEEEEC
T ss_pred             HHHHHHhhccCC-CCcEEEEChHHHHHHHhCC--CHHHHHHHhcccccccCCEEEEEEec
Confidence            356677764333 57999999   99996654  48899999999999999999999995

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.00  E-value=3.9e-11  Score=79.18  Aligned_cols=58  Identities=9%  Similarity=-0.077  Sum_probs=42.5

Q ss_pred             CcchhhhhccCCCCCeEEEEccHhHHHHh---hccccchhhhhhccCcccCCeEEEeccC-Ccc
Q psy12909          1 MALIMERSKEKTDLPRAYGFNTFFHSALA---EHGYSRVKRWTKKLNPLFYNNHKIPTYI-LVV   60 (63)
Q Consensus         1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~---~~gy~~V~RWtk~vdlf~~d~I~iPI~~-~~~   60 (63)
                      |++|.+|...+++..++|+|++++...|.   ..||++++||+++.|+  +|+||||||. +.|
T Consensus        14 ~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~H   75 (186)
T 2oix_A           14 TDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAH   75 (186)
T ss_dssp             HHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTE
T ss_pred             HHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCc
Confidence            46788887655544569999965444443   4567788888887776  9999999998 565

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	63
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	5e-06
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	7e-06
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	4e-05

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKI 53
           M  I + +      P    FN+FF++ L+E GY  V+RW K+         KI
Sbjct: 58  MKYIEKST------PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKI 104

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M L++ER+K++   P  + F+TFF+  L   GY  VKRWTK +N        +P
Sbjct: 57  MNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVP 109

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-05
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P
Sbjct: 57  MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVP 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.35
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.27
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.26
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	98.63

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-13  Score=88.92  Aligned_cols=58  Identities=36%  Similarity=0.514  Sum_probs=50.9

Q ss_pred             cchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909          2 ALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV   60 (63)
Q Consensus         2 ~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~   60 (63)
                      ++|.+++.+.. .+++|+|+|||+++|.+.||+++++|+++++++++|+|++|||.+.|
T Consensus        58 ~~l~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~~~i~iPin~~~H  115 (226)
T d1th0a_          58 NLLVERNKKQG-YPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVH  115 (226)
T ss_dssp             HHHHHHHHHHT-CCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEETTE
T ss_pred             HHHHHhhhhcc-CCceEEecHHHHHHHhhccHHHHHHHHhccCcccCCEEEEeEEcCCc
Confidence            45666664433 57999999999999999999999999999999999999999998876

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.9e-12  Score=83.45  Aligned_cols=59  Identities=44%  Similarity=0.659  Sum_probs=51.2

Q ss_pred             cchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCccc
Q psy12909          2 ALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVVP   61 (63)
Q Consensus         2 ~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~~   61 (63)
                      ++|.++.+.++ .+++|+|+|+|+..+...+|.++++|+++++++++|+|+||||.+.|-
T Consensus        58 ~~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iPin~~~HW  116 (225)
T d2iy1a1          58 NMLMERSKEKG-LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHW  116 (225)
T ss_dssp             HHHHHHTTSTT-SCCEEECCTTHHHHHHHSCGGGTGGGGTTCCGGGSSEEEEEEECSSCE
T ss_pred             HHHHHHhhhhc-cCceEEeccHHHhhhcccCHHHHHHHHhccccccCCEEEEEEeCCCCE
Confidence            34566654433 579999999999999999999999999999999999999999998873

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=1e-12  Score=86.13  Aligned_cols=45  Identities=33%  Similarity=0.574  Sum_probs=41.8

Q ss_pred             CCeEEEEccHhHHHHhhccccchhhhh--hccCcccCCeEEEeccCC
Q psy12909         14 LPRAYGFNTFFHSALAEHGYSRVKRWT--KKLNPLFYNNHKIPTYIL   58 (63)
Q Consensus        14 ~~~~~~fntFFy~~L~~~gy~~V~RWt--k~vdlf~~d~I~iPI~~~   58 (63)
                      .+++|+||||||++|.+.||+++++|+  ++++++++|+|+||||.+
T Consensus        65 ~~~~~~~~s~f~~~l~~~~~~~~~~w~~~~~~~~~~~~~i~iPin~~  111 (221)
T d1euva_          65 TPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLN  111 (221)
T ss_dssp             STTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEEET
T ss_pred             CCCeEEeccHHHHhHhhhchHHHHHHHHhcccchhhcceeEeeEecc
Confidence            378999999999999999999999999  568999999999999975

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-08  Score=65.28  Aligned_cols=46  Identities=2%  Similarity=-0.207  Sum_probs=40.7

Q ss_pred             CCeEEEEccHhHHHHhh-ccccchhhhhhccCcccCCeEEEeccCCc
Q psy12909         14 LPRAYGFNTFFHSALAE-HGYSRVKRWTKKLNPLFYNNHKIPTYILV   59 (63)
Q Consensus        14 ~~~~~~fntFFy~~L~~-~gy~~V~RWtk~vdlf~~d~I~iPI~~~~   59 (63)
                      .+++++|+++++..+.. .+++.+++|+++++++++|+|+||||.+.
T Consensus        48 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifiPIn~~~   94 (212)
T d2bkra1          48 SDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNS   94 (212)
T ss_dssp             TTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEEECCC
T ss_pred             cCcEEEEChHHHHHHhccccHHHHHHHHhccChhhccEEEEeccccc
Confidence            35899999999888876 57899999999999999999999999753