Psyllid ID: psy12936

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVFDTRAGLSR
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccEEccccccccEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHccccccccccHHHcHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEEcccccccEEEccccccEEEcccHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEHHcccHHHccccccccHHHHHHcccccccccccccccccHHHHHccHHHccccccEEccHHHccccccccc
Coil and Loop (DISEMBL)
ICKYFIEAVENskygwfwscpngptciykhalppgfvlkkdkkkeekkdQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRsdfkagrqvglsgrdmfsfnpdlakddmdegdeafdsytrdeeedpesnyreLDLDMLLNEAAeldetnisqakdrvfdtraglsr
Flexible Loop (DISEMBL)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFvlkkdkkkeekkdqisledLIERERAAlaasskftkvtldsflawkkrklkekseamtkaeekkrsdfkagrqvglsgrdmfSFNPDLAKDDMDEGDEAFDsytrdeeedpesnYRELDLDMLLNEAAeldetnisqakdrvfdtraglsr
Low Complexity Region (SEG)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLkkdkkkeekkdQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVFDTRAGLSR
Disordered region (IsUnstruct)
*CKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVL*****************************SKFTKVTLDSFLAWK*********************************************************************************************************
Disordered Region (DISOPRED)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVL**********************************VTLDSFLAWK********************************RDMFSFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETN*****************
Disordered Region (DISEMBL)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKK**********ISLEDLIERERAALAASSKFTKVTLDSFLAWKKRK*********************GRQVGLSGRDMFSFNPDLAKDDMDEGDEAF**************YRELDLDMLLNEAAELDETNISQAKDRVF********
Disordered Region (DISPRO)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEAFDSYTRDEE**PESNYRELDLDMLLNEAAELDETNISQAKDRVFDTR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFxxxxxxxxxxxxxxxxxxxxxKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVFDTRAGLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q7JWR9	404	Zinc finger CCCH domain-c	yes	N/A	0.951	0.440	0.580	1e-52
Q28Y69	406	Zinc finger CCCH domain-c	yes	N/A	0.951	0.438	0.582	4e-52
Q8WU90	426	Zinc finger CCCH domain-c	yes	N/A	0.946	0.415	0.513	3e-41
Q6U6G5	426	Zinc finger CCCH domain-c	yes	N/A	0.957	0.420	0.502	2e-40
Q3TIV5	426	Zinc finger CCCH domain-c	yes	N/A	0.957	0.420	0.497	3e-40
Q1RMM1	426	Zinc finger CCCH domain-c	yes	N/A	0.946	0.415	0.513	4e-38
Q5H7N8	429	Zinc finger CCCH domain-c	yes	N/A	0.962	0.419	0.497	9e-38
A4IGY3	426	Zinc finger CCCH domain-c	yes	N/A	0.909	0.399	0.5	4e-36
Q6DD06	426	Zinc finger CCCH domain-c	N/A	N/A	0.909	0.399	0.477	6e-36
Q803J8	433	Zinc finger CCCH domain-c	yes	N/A	0.657	0.284	0.590	6e-34

>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 134/181 (74%), Gaps = 3/181 (1%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CPNG  CIY+HALP G+VLK+DKKKEEK  +ISL DLIE+E
Sbjct: 170 ICKFFLEAVEKSKYGWFWECPNGGKCIYRHALPAGYVLKRDKKKEEKPTEISLVDLIEKE 229

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL  +   T+VTL+SFLAWKKRK+ EK   +   EE+K+SDF  G+Q G+SGR+MFSF
Sbjct: 230 RAALGPNQ--TRVTLESFLAWKKRKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSF 287

Query: 121 NPDLAKDD-MDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVF 179
           NPDL  D  M+EGD AFD Y R++++D    ++ELDL  L   A E+D +    + +R+ 
Sbjct: 288 NPDLVDDGPMEEGDAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLL 347

Query: 180 D 180
           D
Sbjct: 348 D 348

Drosophila melanogaster (taxid: 7227)

>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1

 Score =  203 bits (517), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/182 (58%), Positives = 136/182 (74%), Gaps = 4/182 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CPNG  CIY+HALPPG+VLK+DKKKE+K  +ISL DLIE+E
Sbjct: 171 ICKFFLEAVEKSKYGWFWECPNGEKCIYRHALPPGYVLKRDKKKEDKPTEISLVDLIEKE 230

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL ++   T+VTL++FLAWKKRKL+EK   M   EE+K+SDF  G+Q G+SGR+MFSF
Sbjct: 231 RAALGSNQ--TRVTLETFLAWKKRKLQEKKAKMVAEEERKKSDFSKGKQFGISGREMFSF 288

Query: 121 NPDLAKDD-MDEGDEAFDSYTR-DEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           NPDL  D  ++EGD AFD Y R D+++D    ++ELDL  L   A E+D +    +  R+
Sbjct: 289 NPDLVDDGPIEEGDAAFDVYKREDDDDDNAFEFKELDLAALSLAAKEVDGSGTIASSTRL 348

Query: 179 FD 180
            D
Sbjct: 349 LD 350

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1

 Score =  167 bits (424), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 133/183 (72%), Gaps = 6/183 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK+D+ISLEDLIER
Sbjct: 179 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct: 239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query: 120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct: 297 FRPELVNDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYI--PRDVDETGITVASLER 354

Query: 179 FDT 181
           F T
Sbjct: 355 FST 357

Protects DRG1 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 133/185 (71%), Gaps = 6/185 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +C++F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK+D+ISLEDLIER
Sbjct: 179 VCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct: 239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query: 120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           F P+L  DD +E D+  +   T  +E D      ++DL + +    +++ET I+ A    
Sbjct: 297 FRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYV--PRDVEETGITVASLER 354

Query: 179 FDTRA 183
           F T A
Sbjct: 355 FSTYA 359

Protects DRG1 from proteolytic degradation.

Rattus norvegicus (taxid: 10116)

>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 133/185 (71%), Gaps = 6/185 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +C++F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK+D+ISLEDLIER
Sbjct: 179 VCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct: 239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query: 120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           F P+L  DD +E D+  +   T  +E D      ++D+ + +    +++ET I+ A    
Sbjct: 297 FRPELVNDDDEEADDTRYIQGTGGDEVDDSMGVNDIDISLYV--PRDVEETGITVASVER 354

Query: 179 FDTRA 183
           F T A
Sbjct: 355 FSTYA 359

Protects DRG1 from proteolytic degradation.

Mus musculus (taxid: 10090)

>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1

 Score =  157 bits (397), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 133/183 (72%), Gaps = 6/183 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK+D+ISLEDLIER
Sbjct: 179 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct: 239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDIERRKADFKAGKALVISGREVFE 296

Query: 120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct: 297 FRPELVDDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYI--PRDVDETGITVASLER 354

Query: 179 FDT 181
           F T
Sbjct: 355 FST 357

Protects DRG1 from proteolytic degradation.

Bos taurus (taxid: 9913)

>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1

 Score =  156 bits (394), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 136/193 (70%), Gaps = 13/193 (6%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CKYF++A+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK+D+ISLEDLIE+
Sbjct: 180 VCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKQDEISLEDLIEK 239

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ERAAL  +   TK+TL+ F+AWK+RK +EK +   +  E++++DFKAG+ + +SGR++F 
Sbjct: 240 ERAALGPN--VTKITLECFIAWKRRKRQEKIDKAEQDMERRKADFKAGKALVISGREVFE 297

Query: 120 FNPDLAKDDMDEGDEAFDSYTR-----DEEEDPESNYRELDLDMLLNEAAELDETNISQA 174
           F P+L   D +E D+    YT+     DE EDP     ++DL + + +A  +DET I+ A
Sbjct: 298 FRPELVDADDEEADDT--RYTQGTGEDDEVEDPVC-VNDVDLSLYVPKA--VDETGITVA 352

Query: 175 KDRVFDTRAGLSR 187
               F T A + +
Sbjct: 353 SPERFSTYASIEK 365

Protects DRG1 from proteolytic degradation.

Gallus gallus (taxid: 9031)

>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1

 Score =  150 bits (379), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 126/176 (71%), Gaps = 6/176 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVLKKDKKKEEK ++ISLEDLIER
Sbjct: 180 VCKFFLEAIENNKYGWFWVCPGGGDMCMYRHALPPGFVLKKDKKKEEKDEEISLEDLIER 239

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ERA L  +   T++TL+SFL WKKRK +++   + +  EK+++DFKAG+ +G+SGR++F 
Sbjct: 240 ERAGLGLN--VTRITLESFLEWKKRKRQDRIVKLEEEMEKRKADFKAGKSLGISGREVFE 297

Query: 120 FNPDLAKDDMDEGDEAFDSYTRDEEE-DPESNYRELDLDMLLNEAAELDETNISQA 174
           F P+L   + D+ +     Y  D+E+ D E+     D+D+      ++DET I+ A
Sbjct: 298 FRPELI--NDDDEEADDTDYIFDKEDSDSETADDIKDIDLSRFVLKDVDETGITVA 351

Protects drg1 from proteolytic degradation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 6/176 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CK+F+EA+EN+KYGWFW CP G  TC+Y+HALPPGFVLKK+K KE+K + ISLEDLIE+
Sbjct: 180 VCKFFLEAIENNKYGWFWVCPGGGDTCMYRHALPPGFVLKKEKVKEDKDEDISLEDLIEK 239

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ERAAL  +   T++TL+SFL WKKRK  ++   + +  EK++ DFK+G+ +G+SGR++F 
Sbjct: 240 ERAALGPN--VTRITLESFLQWKKRKRADRILKLEEEMEKRKEDFKSGKSLGVSGREVFE 297

Query: 120 FNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYREL-DLDMLLNEAAELDETNISQA 174
           F P+L   + D+ +    SYT + E+       ++ D+D+      ++DET I+ A
Sbjct: 298 FRPELI--NDDDEEADDASYTFELEDSEAEEIDDVQDIDLSRYVLKDVDETGITVA 351

Protects drg1 from proteolytic degradation.

Xenopus laevis (taxid: 8355)

>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1

 Score =  143 bits (361), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 100/127 (78%), Gaps = 4/127 (3%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQ-ISLEDLIE 58
           +CKYF++A+EN+KYGWFW CP G   C+Y+HALP GFVLKKDKK EEK ++ ISLEDLIE
Sbjct: 180 VCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPVGFVLKKDKKNEEKNEEEISLEDLIE 239

Query: 59  RERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMF 118
            ER+ L A+   T++TL++FLAWKKRK +EK     +  E+K++DFKAGR +G+SGR++F
Sbjct: 240 TERSLLGAN--VTRITLETFLAWKKRKRQEKLAKAEQDMERKKADFKAGRALGVSGREVF 297

Query: 119 SFNPDLA 125
            F P+L 
Sbjct: 298 EFRPELV 304

Protects drg1 from proteolytic degradation.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
326319994	384	zinc finger CCCH domain-containing prote	0.941	0.458	0.677	5e-59
239792362	261	ACYPI002988 [Acyrthosiphon pisum]	0.941	0.674	0.677	1e-58
91093140	388	PREDICTED: similar to GA21225-PA [Tribol	0.930	0.448	0.636	2e-57
158293381	404	AGAP008634-PA [Anopheles gambiae str. PE	0.930	0.430	0.634	3e-56
332019916	399	Zinc finger CCCH domain-containing prote	0.941	0.441	0.672	8e-56
156536911	406	PREDICTED: zinc finger CCCH domain-conta	0.951	0.438	0.664	1e-54
322800082	399	hypothetical protein SINV_10020 [Solenop	0.914	0.428	0.674	2e-53
332372963	397	unknown [Dendroctonus ponderosae]	0.919	0.433	0.644	5e-53
242021774	405	translation machinery-associated protein	0.930	0.429	0.675	7e-52
19921834	404	CG8635 [Drosophila melanogaster] gi|1221	0.951	0.440	0.580	5e-51

>gi|326319994|ref|NP_001191866.1| zinc finger CCCH domain-containing protein 15 [Acyrthosiphon pisum]

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 152/180 (84%), Gaps = 4/180 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           IC +F+EAVE SKYGWFWSCPNG +CIY+HALPPGFVLKKDKKK++KKD+I LEDLIERE
Sbjct: 165 ICMFFLEAVEKSKYGWFWSCPNGTSCIYRHALPPGFVLKKDKKKDDKKDEIQLEDLIERE 224

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL  S KFT+VTL+SFLAWKKRK++EK +A+ K EEKKR+D+KAGRQ+GLSGR+MFSF
Sbjct: 225 RAAL-NSVKFTRVTLESFLAWKKRKVREKKDAIIKDEEKKRTDYKAGRQIGLSGREMFSF 283

Query: 121 NPDLA-KDDMDEGDEAFDSYTRDEEEDPESN--YRELDLDMLLNEAAELDETNISQAKDR 177
           NP++A  D MD+G+EAFD+Y RDE+ED + N   RE+ L+ L  EA+E+D+T     +DR
Sbjct: 284 NPEMAIGDSMDDGEEAFDAYIRDEDEDVDGNVKVREIQLETLELEASEVDDTGTRLPQDR 343

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792362|dbj|BAH72533.1| ACYPI002988 [Acyrthosiphon pisum]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 152/180 (84%), Gaps = 4/180 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           IC +F+EAVE SKYGWFWSCPNG +CIY+HALPPGFVLKKDKKK++KKD+I LEDLIERE
Sbjct: 42  ICMFFLEAVEKSKYGWFWSCPNGTSCIYRHALPPGFVLKKDKKKDDKKDEIQLEDLIERE 101

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL  S KFT+VTL+SFLAWKKRK++EK +A+ K EEKKR+D+KAGRQ+GLSGR+MFSF
Sbjct: 102 RAAL-NSVKFTRVTLESFLAWKKRKVREKKDAIIKDEEKKRTDYKAGRQIGLSGREMFSF 160

Query: 121 NPDLA-KDDMDEGDEAFDSYTRDEEEDPESN--YRELDLDMLLNEAAELDETNISQAKDR 177
           NP++A  D MD+G+EAFD+Y RDE+ED + N   RE+ L+ L  EA+E+D+T     +DR
Sbjct: 161 NPEMAIGDSMDDGEEAFDAYIRDEDEDVDGNVKVREIQLETLELEASEVDDTGTRLPQDR 220

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093140|ref|XP_969738.1| PREDICTED: similar to GA21225-PA [Tribolium castaneum] gi|270003015|gb|EEZ99462.1| hypothetical protein TcasGA2_TC000028 [Tribolium castaneum]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 152/179 (84%), Gaps = 5/179 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CP+G +CIY+HALPPGF LKKDKKK++K+D+ISLEDLIE+E
Sbjct: 171 ICKHFLEAVEKSKYGWFWQCPSGESCIYRHALPPGFTLKKDKKKDDKRDEISLEDLIEKE 230

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL ++   TKVTL++FLAWKKRK++EK +A  + E+KKR+DFKAG+QVGLSGR+MFSF
Sbjct: 231 RAALGSTQ--TKVTLETFLAWKKRKIQEKKDAAKRDEDKKRTDFKAGKQVGLSGREMFSF 288

Query: 121 NPDL-AKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
           NP+L A+++MDEGDEAFDSY   + ED E++Y+E++LD++   A E+D T    ++DR+
Sbjct: 289 NPELAAQNNMDEGDEAFDSYNYSDTEDDEADYKEINLDLI--SAEEVDGTGTVASEDRL 345

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293381|ref|XP_314730.4| AGAP008634-PA [Anopheles gambiae str. PEST] gi|157016678|gb|EAA10155.5| AGAP008634-PA [Anopheles gambiae str. PEST]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 136/178 (76%), Gaps = 4/178 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKK-EEKKDQISLEDLIER 59
           ICKYF++AVE S YGWFW CPNG  CIY+HALPPG+VLKKDKKK E +K++ISL DLIER
Sbjct: 172 ICKYFLDAVERSLYGWFWECPNGEKCIYRHALPPGYVLKKDKKKAESQKEEISLVDLIER 231

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ERAAL  S   T+VTL+SFLAWKKRKL+EK + + K EE+K  DFKAGRQ GLSGR+MFS
Sbjct: 232 ERAALGPSQ--TRVTLESFLAWKKRKLQEKKDKLQKEEERKLKDFKAGRQNGLSGREMFS 289

Query: 120 FNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDR 177
           FNPDL  D  D+G EA +SY R+E++D  + YRELDL+ML     ++D T      DR
Sbjct: 290 FNPDLIDDGTDDG-EAVESYGRNEDDDDATEYRELDLNMLSLNIKDVDNTGTVAETDR 346

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019916|gb|EGI60376.1| Zinc finger CCCH domain-containing protein 15-like protein [Acromyrmex echinatior]

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 144/180 (80%), Gaps = 4/180 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CP+G  CIY+HALPPGFVLKKDKKKE+KKD+ISLEDLIE E
Sbjct: 173 ICKHFLEAVEKSKYGWFWECPSGQKCIYRHALPPGFVLKKDKKKEDKKDEISLEDLIETE 232

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RA L  +   TK+TL++FLAWKKRKLKEK E   K EEKKR+D+KAGRQVG+SGR+MF F
Sbjct: 233 RANLGPNQ--TKITLETFLAWKKRKLKEKQEQAIKDEEKKRNDYKAGRQVGISGREMFYF 290

Query: 121 NPDLAK-DDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNIS-QAKDRV 178
           NPDLA  D +DEGDEA  SY R+E+E  +  YRELD D L  EA+E+D   I+  A+DR+
Sbjct: 291 NPDLAAGDGIDEGDEAISSYVREEDESEDVQYRELDTDRLAFEASEIDSNGITVAAEDRL 350

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156536911|ref|XP_001607756.1| PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Nasonia vitripennis]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 146/182 (80%), Gaps = 4/182 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CP+G  CIY+HALPPGFVLKKD KKEEKKD+ISLEDLIERE
Sbjct: 175 ICKHFLEAVEKSKYGWFWECPSGQKCIYRHALPPGFVLKKDLKKEEKKDEISLEDLIERE 234

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RA L  +   TK+TL++FLAWKKRKLKEK +   K EEKKR+D KAGRQVG+SGR+MF F
Sbjct: 235 RANLGPNQ--TKITLETFLAWKKRKLKEKQQKAIKDEEKKRNDLKAGRQVGISGREMFYF 292

Query: 121 NPDLAK-DDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNI-SQAKDRV 178
           NPDLA  D  D+GDEA  +Y R+E E+ ++ YRELDL+ L+ EA+++D T I + AKDR 
Sbjct: 293 NPDLATGDGADDGDEAIANYDREEGEEEDAQYRELDLNELVLEASQVDTTGICTVAKDRS 352

Query: 179 FD 180
            D
Sbjct: 353 KD 354

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800082|gb|EFZ21188.1| hypothetical protein SINV_10020 [Solenopsis invicta]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 140/175 (80%), Gaps = 4/175 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CP+G  CIY+HALPPGFVLKKDKKKE+KKD+ISLEDLIE E
Sbjct: 174 ICKHFLEAVEKSKYGWFWECPSGQKCIYRHALPPGFVLKKDKKKEDKKDEISLEDLIETE 233

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RA L  +   TK+TL++FLAWKKRKLKEK E   K EEKKRSD+KAGRQVG+SGR+MF F
Sbjct: 234 RANLGPNQ--TKITLETFLAWKKRKLKEKQEQAIKDEEKKRSDYKAGRQVGISGREMFYF 291

Query: 121 NPDLAK-DDMDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQA 174
           NP+LA  D +DEGDEA  SY R+E++  +  YRELD D L  EA+E+D   I+ A
Sbjct: 292 NPELAAGDGIDEGDEAISSYAREEDDSEDVEYRELD-DRLAFEASEIDTNGITVA 345

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372963|gb|AEE61623.1| unknown [Dendroctonus ponderosae]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 150/180 (83%), Gaps = 8/180 (4%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICKYF++AVE SKYGWFW CP G  CIY+HALPPGF+LKKD+KK++KKD+I+LE+LIE+E
Sbjct: 174 ICKYFVDAVEKSKYGWFWQCPAGENCIYRHALPPGFMLKKDRKKDDKKDEITLEELIEKE 233

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL    K TKVTL++FLAWKKRK++EK +A  K E+KKRSDFKAGRQVGLSGR+MFSF
Sbjct: 234 RAALG--PKQTKVTLETFLAWKKRKIQEKKDAAKKDEDKKRSDFKAGRQVGLSGREMFSF 291

Query: 121 NPDLAKD-DMDEGDEAFDS--YTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDR 177
           NP++A + D++EGDEAFDS  Y  D+E+  E  Y+E++LDM L++ +E+D+T    A+DR
Sbjct: 292 NPEMAAEFDLEEGDEAFDSTMYKNDDEDAVE--YKEINLDM-LDDGSEVDDTGTLAAEDR 348

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021774|ref|XP_002431318.1| translation machinery-associated protein, putative [Pediculus humanus corporis] gi|212516586|gb|EEB18580.1| translation machinery-associated protein, putative [Pediculus humanus corporis]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 146/179 (81%), Gaps = 5/179 (2%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           ICKYF++AVE +KYGWFW CPNG   CIY+HALPPGFVLKKDKKK++KKD+IS+E+L+E+
Sbjct: 172 ICKYFLQAVEKNKYGWFWECPNGGDKCIYRHALPPGFVLKKDKKKDDKKDEISIEELVEK 231

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
           ERAAL   +  TKVTL++  AWKKRKLKEK E + K EEKKR+D+KAGRQ+GLSGR+MF 
Sbjct: 232 ERAALG--TNLTKVTLETMTAWKKRKLKEKKEQLLKEEEKKRNDYKAGRQIGLSGREMFY 289

Query: 120 FNPDLAKDD-MDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDR 177
           FNPDLA +D MDEGDEAFDSY R+EEED E  Y+EL+LD L  EA+E+D T      DR
Sbjct: 290 FNPDLAANDLMDEGDEAFDSYAREEEED-EVQYKELELDSLAKEASEVDGTGTVAPNDR 347

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921834|ref|NP_610401.1| CG8635 [Drosophila melanogaster] gi|122129587|sp|Q7JWR9.1|ZC3HF_DROME RecName: Full=Zinc finger CCCH domain-containing protein 15 homolog; Short=DRG family regulatory protein 1 homolog gi|7304021|gb|AAF59063.1| CG8635 [Drosophila melanogaster] gi|16768548|gb|AAL28493.1| GM08440p [Drosophila melanogaster] gi|21064223|gb|AAM29341.1| AT31705p [Drosophila melanogaster] gi|220943118|gb|ACL84102.1| CG8635-PA [synthetic construct] gi|220953288|gb|ACL89187.1| CG8635-PA [synthetic construct]

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 134/181 (74%), Gaps = 3/181 (1%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERE 60
           ICK+F+EAVE SKYGWFW CPNG  CIY+HALP G+VLK+DKKKEEK  +ISL DLIE+E
Sbjct: 170 ICKFFLEAVEKSKYGWFWECPNGGKCIYRHALPAGYVLKRDKKKEEKPTEISLVDLIEKE 229

Query: 61  RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
           RAAL  +   T+VTL+SFLAWKKRK+ EK   +   EE+K+SDF  G+Q G+SGR+MFSF
Sbjct: 230 RAALGPNQ--TRVTLESFLAWKKRKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSF 287

Query: 121 NPDLAKDD-MDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVF 179
           NPDL  D  M+EGD AFD Y R++++D    ++ELDL  L   A E+D +    + +R+ 
Sbjct: 288 NPDLVDDGPMEEGDAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLL 347

Query: 180 D 180
           D
Sbjct: 348 D 348

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
UNIPROTKB|Q28Y69	406	GA21225 "Zinc finger CCCH doma	0.951	0.438	0.538	5.2e-49
FB|FBgn0033317	404	CG8635 [Drosophila melanogaste	0.951	0.440	0.535	1.8e-48
UNIPROTKB|Q8WU90	426	ZC3H15 "Zinc finger CCCH domai	0.946	0.415	0.459	7.5e-41
UNIPROTKB|F1PEL5	418	ZC3H15 "Uncharacterized protei	0.946	0.423	0.459	9.6e-41
UNIPROTKB|Q1RMM1	426	ZC3H15 "Zinc finger CCCH domai	0.946	0.415	0.459	1.2e-40
UNIPROTKB|F1RYJ5	426	ZC3H15 "Uncharacterized protei	0.946	0.415	0.459	2e-40
MGI|MGI:1919747	426	Zc3h15 "zinc finger CCCH-type	0.957	0.420	0.443	5.3e-40
RGD|1359234	426	Zc3h15 "zinc finger CCCH-type	0.957	0.420	0.448	5.3e-40
UNIPROTKB|F1NGV1	403	ZC3H15 "Zinc finger CCCH domai	0.962	0.446	0.445	1.1e-39
UNIPROTKB|F1NSE2	468	ZC3H15 "Zinc finger CCCH domai	0.962	0.384	0.445	1.1e-39

UNIPROTKB|Q28Y69 GA21225 "Zinc finger CCCH domain-containing protein 15 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 98/182 (53%), Positives = 128/182 (70%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIERE 60
             ICK+F+EAVE SKYGWFW CPNG  CIY+HALPPG+VL           +ISL DLIE+E
Sbjct:   171 ICKFFLEAVEKSKYGWFWECPNGEKCIYRHALPPGYVLKRDKKKEDKPTEISLVDLIEKE 230

Query:    61 RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
             RAAL ++   T+VTL++FLAWKKRKL+EK   M   EE+K+SDF  G+Q G+SGR+MFSF
Sbjct:   231 RAALGSNQ--TRVTLETFLAWKKRKLQEKKAKMVAEEERKKSDFSKGKQFGISGREMFSF 288

Query:   121 NPDLAKDD-MDEGDEAFDSYTRDEEEDPES-NYRELDLDMLLNEAAELDETNISQAKDRV 178
             NPDL  D  ++EGD AFD Y R++++D  +  ++ELDL  L   A E+D +    +  R+
Sbjct:   289 NPDLVDDGPIEEGDAAFDVYKREDDDDDNAFEFKELDLAALSLAAKEVDGSGTIASSTRL 348

Query:   179 FD 180
              D
Sbjct:   349 LD 350

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0033317 CG8635 [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 97/181 (53%), Positives = 125/181 (69%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIERE 60
             ICK+F+EAVE SKYGWFW CPNG  CIY+HALP G+VL           +ISL DLIE+E
Sbjct:   170 ICKFFLEAVEKSKYGWFWECPNGGKCIYRHALPAGYVLKRDKKKEEKPTEISLVDLIEKE 229

Query:    61 RAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSF 120
             RAAL  +   T+VTL+SFLAWKKRK+ EK   +   EE+K+SDF  G+Q G+SGR+MFSF
Sbjct:   230 RAALGPNQ--TRVTLESFLAWKKRKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSF 287

Query:   121 NPDLAKDD-MDEGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRVF 179
             NPDL  D  M+EGD AFD Y R++++D    ++ELDL  L   A E+D +    + +R+ 
Sbjct:   288 NPDLVDDGPMEEGDAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLL 347

Query:   180 D 180
             D
Sbjct:   348 D 348

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8WU90 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 84/183 (45%), Positives = 122/183 (66%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   179 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct:   297 FRPELVNDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYIPR--DVDETGITVASLER 354

Query:   179 FDT 181
             F T
Sbjct:   355 FST 357

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1PEL5 ZC3H15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 84/183 (45%), Positives = 122/183 (66%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   171 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 230

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   231 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 288

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct:   289 FRPELVDDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYIPR--DVDETGITVASLER 346

Query:   179 FDT 181
             F T
Sbjct:   347 FST 349

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q1RMM1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Bos taurus (taxid:9913)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 84/183 (45%), Positives = 122/183 (66%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   179 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDIERRKADFKAGKALVISGREVFE 296

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct:   297 FRPELVDDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYIPR--DVDETGITVASLER 354

Query:   179 FDT 181
             F T
Sbjct:   355 FST 357

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RYJ5 ZC3H15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/183 (45%), Positives = 122/183 (66%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CK+F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   179 VCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDIERRKADFKAGKALVISGREVFE 296

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D   +  ++DL + +    ++DET I+ A    
Sbjct:   297 FRPELVDDDDEEADDTRYTQGTGCDEVDDSVSVNDIDLSLYIPR--DVDETGITVASLER 354

Query:   179 FDT 181
             F T
Sbjct:   355 FST 357

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1919747 Zc3h15 "zinc finger CCCH-type containing 15" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/185 (44%), Positives = 122/185 (65%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +C++F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   179 VCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D      ++D+ + +    +++ET I+ A    
Sbjct:   297 FRPELVNDDDEEADDTRYIQGTGGDEVDDSMGVNDIDISLYVPR--DVEETGITVASVER 354

Query:   179 FDTRA 183
             F T A
Sbjct:   355 FSTYA 359

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1359234 Zc3h15 "zinc finger CCCH-type containing 15" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 83/185 (44%), Positives = 122/185 (65%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +C++F+EA+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIER
Sbjct:   179 VCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKEDEISLEDLIER 238

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ER+AL  +   TK+TL+SFLAWKKRK +EK + + +  E++++DFKAG+ + +SGR++F 
Sbjct:   239 ERSALGPN--VTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFE 296

Query:   120 FNPDLAKDDMDEGDEA-FDSYTRDEEEDPESNYRELDLDMLLNEAAELDETNISQAKDRV 178
             F P+L  DD +E D+  +   T  +E D      ++DL + +    +++ET I+ A    
Sbjct:   297 FRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYVPR--DVEETGITVASLER 354

Query:   179 FDTRA 183
             F T A
Sbjct:   355 FSTYA 359

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1NGV1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 86/193 (44%), Positives = 125/193 (64%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CKYF++A+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIE+
Sbjct:   154 VCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKQDEISLEDLIEK 213

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ERAAL  +   TK+TL+ F+AWK+RK +EK +   +  E++++DFKAG+ + +SGR++F 
Sbjct:   214 ERAALGPN--VTKITLECFIAWKRRKRQEKIDKAEQDMERRKADFKAGKALVISGREVFE 271

Query:   120 FNPDLAKDDMDEGDEAFDSYTR-----DEEEDPESNYRELDLDMLLNEAAELDETNISQA 174
             F P+L   D +E D+    YT+     DE EDP     ++DL + + +A  +DET I+ A
Sbjct:   272 FRPELVDADDEEADDT--RYTQGTGEDDEVEDPVC-VNDVDLSLYVPKA--VDETGITVA 326

Query:   175 KDRVFDTRAGLSR 187
                 F T A + +
Sbjct:   327 SPERFSTYASIEK 339

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

UNIPROTKB|F1NSE2 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 86/193 (44%), Positives = 125/193 (64%)

Query:     1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLXXXXXXXXXXXQISLEDLIER 59
             +CKYF++A+EN+KYGWFW CP G   C+Y+HALPPGFVL           +ISLEDLIE+
Sbjct:   219 VCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKQDEISLEDLIEK 278

Query:    60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
             ERAAL  +   TK+TL+ F+AWK+RK +EK +   +  E++++DFKAG+ + +SGR++F 
Sbjct:   279 ERAALGPN--VTKITLECFIAWKRRKRQEKIDKAEQDMERRKADFKAGKALVISGREVFE 336

Query:   120 FNPDLAKDDMDEGDEAFDSYTR-----DEEEDPESNYRELDLDMLLNEAAELDETNISQA 174
             F P+L   D +E D+    YT+     DE EDP     ++DL + + +A  +DET I+ A
Sbjct:   337 FRPELVDADDEEADDT--RYTQGTGEDDEVEDPVC-VNDVDLSLYVPKA--VDETGITVA 391

Query:   175 KDRVFDTRAGLSR 187
                 F T A + +
Sbjct:   392 SPERFSTYASIEK 404

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q803J8	ZC3HF_DANRE	No assigned EC number	0.5905	0.6577	0.2840	yes	N/A
Q8WU90	ZC3HF_HUMAN	No assigned EC number	0.5136	0.9465	0.4154	yes	N/A
Q7JWR9	ZC3HF_DROME	No assigned EC number	0.5801	0.9518	0.4405	yes	N/A
Q1RMM1	ZC3HF_BOVIN	No assigned EC number	0.5136	0.9465	0.4154	yes	N/A
Q28Y69	ZC3HF_DROPS	No assigned EC number	0.5824	0.9518	0.4384	yes	N/A
Q6U6G5	ZC3HF_RAT	No assigned EC number	0.5027	0.9572	0.4201	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
COG5252	299	COG5252, COG5252, Uncharacterized conserved protei	2e-28

>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

 Score =  107 bits (267), Expect = 2e-28
 Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 9/151 (5%)

Query: 1   ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIER 59
           +CK+FIEA+E+ KYGW W+CPNG   C Y H LP G+VL +DK K+  + +ISLE+ IE 
Sbjct: 143 VCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDSTQVEISLEEFIEL 202

Query: 60  ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKA-GRQVGLSGRDMF 118
           ER +L    K T +T ++F  WK      +   + K +E+K S  K  GR  G  G ++F
Sbjct: 203 ERQSL--PEKLTPLTEENFKEWK----DGRRLRILKQKEEKESARKVKGRATGTKGVELF 256

Query: 119 SFNPDLAKDDMDEGDE-AFDSYTRDEEEDPE 148
               DL KDD++ G+E  +      E ED E
Sbjct: 257 ETRRDLFKDDVEAGEEWDYTERCYSESEDEE 287

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG1763|consensus	343		100.0
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	100.0
KOG4018|consensus	215		98.93
PF01396	39	zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc	95.72
smart00356	27	ZnF_C3H1 zinc finger.	94.83
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	94.78
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	93.24

>KOG1763|consensus

Probab=100.00  E-value=4e-61  Score=424.09  Aligned_cols=156  Identities=50%  Similarity=0.950  Sum_probs=138.3

Q ss_pred             CchhHHHHHHcCCCCccccCCC-CCCccccccCCCccccccchhhHhhhcccChHHHHHHHHHHhccCCCcccccHHHHH
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPN-GPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFL   79 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPn-G~~C~YrH~LPpG~Vlk~~~k~ee~~~eisLEE~iE~ER~kL~~~~~gTpVT~EsFl   79 (187)
                      ||||||+|||+|+|||||+||| |+.|+||||||+|||||+++|+++++++||||++||.||++|++|  +||||+|||+
T Consensus       158 VCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVLk~dkkk~ek~~eISlEe~IE~ER~~L~~n--lT~~T~e~F~  235 (343)
T KOG1763|consen  158 VCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYVLKRDKKKLEKQDEISLEELIEKERAALGPN--LTPLTEETFK  235 (343)
T ss_pred             HHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchhhhhhhhhhcccccccHHHHHHHHHHhcCCC--CccccHHHHH
Confidence            8999999999999999999999 589999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccccccccCCCCccCCCCcCcccccccccCCCCCCccccccchhhhh
Q psy12936         80 AWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDML  159 (187)
Q Consensus        80 ~WKkkk~~Ek~~~~~~~~e~kk~~~kaGk~~~LSGRELFe~dp~L~~DD~d~~dea~d~~~~~~~~~~~~~~~~idl~~~  159 (187)
                      +||+++++++++++++.+++++   +.|++. |||||||+++++||+||+++ .++++...+.+++|+.+.+++||+..|
T Consensus       236 ~WKk~k~~er~~k~~~~~~~~k---~~gk~~-~sGRElF~~~~dl~~dd~~e-~~d~e~~~~~ee~d~~~k~~e~d~~~~  310 (343)
T KOG1763|consen  236 AWKKRKIRERKEKLAAEKAERK---KVGKSN-MSGRELFESNADLVNDDDEE-AGDLEYTEYSEETDEEAKVKEADAPIF  310 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhh---hhccCC-CchHHHHhhchhhccCchhh-ccchhhhhhccchhhhhhhhhcccccc
Confidence            9999999999999888776665   678866 99999999999999996322 222333334678889999999999888


Q ss_pred             hhhccccccCC
Q psy12936        160 LNEAAELDETN  170 (187)
Q Consensus       160 ~~~~~~vd~tg  170 (187)
                             |++|
T Consensus       311 -------d~~~  314 (343)
T KOG1763|consen  311 -------DGSG  314 (343)
T ss_pred             -------cccC
Confidence                   6777

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.1e-44  Score=308.74  Aligned_cols=134  Identities=40%  Similarity=0.757  Sum_probs=110.0

Q ss_pred             CchhHHHHHHcCCCCccccCCCC-CCccccccCCCccccccchhhHhhhcccChHHHHHHHHHHhccCCCcccccHHHHH
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNG-PTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFL   79 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG-~~C~YrH~LPpG~Vlk~~~k~ee~~~eisLEE~iE~ER~kL~~~~~gTpVT~EsFl   79 (187)
                      ||||||+|+|+|+|||||.|||| +.|+|+|+||.||||++++++.+.+.+||||++||.||+.|+++  +||||.|+|.
T Consensus       143 VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd~tq~eislEefIE~eR~~L~~~--LTP~TeenFk  220 (299)
T COG5252         143 VCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDSTQVEISLEEFIELERQSLPEK--LTPLTEENFK  220 (299)
T ss_pred             HHHHHHHHHhcCCccceeeCCCCCceeeeeeccCccceeccccccccccccccHHHHHHHHhccCCCc--CCcccHHHHH
Confidence            79999999999999999999995 89999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccc-cccccCCCCccCCCCcCccccccccc
Q psy12936         80 AWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGR-DMFSFNPDLAKDDMDEGDEAFDSYTR  141 (187)
Q Consensus        80 ~WKkkk~~Ek~~~~~~~~e~kk~~~kaGk~~~LSGR-ELFe~dp~L~~DD~d~~dea~d~~~~  141 (187)
                      +||.-++-.....+++....|+   -.|+.+ +||+ ++|+.+..++-||.. +.++||..++
T Consensus       221 ~Wkd~~~~r~lkq~ee~~s~Rk---~~gr~~-~~k~~e~FEt~~d~~~ddv~-~ge~wD~te~  278 (299)
T COG5252         221 EWKDGRRLRILKQKEEKESARK---VKGRAT-GTKGVELFETRRDLFKDDVE-AGEEWDYTER  278 (299)
T ss_pred             HhccchHHHHHHHHHHHHhccc---chhhhh-hccchhhhhccccccccccc-ccccccHHHH
Confidence            9998777554333332222222   235644 4555 999999999999754 3345665544

>KOG4018|consensus

Probab=98.93  E-value=4.9e-10  Score=96.08  Aligned_cols=71  Identities=28%  Similarity=0.400  Sum_probs=52.5

Q ss_pred             cccChHHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccccccccCCCCccCC
Q psy12936         49 DQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDD  128 (187)
Q Consensus        49 ~eisLEE~iE~ER~kL~~~~~gTpVT~EsFl~WKkkk~~Ek~~~~~~~~e~kk~~~kaGk~~~LSGRELFe~dp~L~~DD  128 (187)
                      -++..++..|.||++++    |||||++||++||.+|.++......+.+. +   .++ ..+++|||++|+.++.+-.+|
T Consensus       125 ~e~~~~~~ee~e~~kfh----gt~VT~esfl~Wk~~fe~el~~~~~k~~~-~---~~~-~~~k~tgRQ~f~~d~~~~~~~  195 (215)
T KOG4018|consen  125 REQEAREAEEEERKKFH----GTPVTLESFLEWKLKFEEELLQIKAKVKK-R---LQA-LAKKLTGRQLFETDHKGDRSD  195 (215)
T ss_pred             HHHHHHHHHHHhhcccc----CCceehhhhHHHHHhhhhhhhhhhhhhhh-H---HHH-HhhhHHHHHHHHhcccCChhh
Confidence            34566777778888877    99999999999999999998433333222 2   122 235699999999998887764

>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i

Probab=95.72  E-value=0.0065  Score=39.13  Aligned_cols=26  Identities=38%  Similarity=0.795  Sum_probs=23.3

Q ss_pred             HHcCCCCccccCCCCCCccccccCCC
Q psy12936          9 VENSKYGWFWSCPNGPTCIYKHALPP   34 (187)
Q Consensus         9 ve~~kYGwfW~CPnG~~C~YrH~LPp   34 (187)
                      +..+++|.||.|.|-..|.|...||+
T Consensus        13 ~r~~k~g~F~~Cs~yP~C~~~~~~~~   38 (39)
T PF01396_consen   13 LRRGKKGKFLGCSNYPECKYTEPLPK   38 (39)
T ss_pred             EEECCCCCEEECCCCCCcCCeEeCCC
Confidence            35789999999999999999999985

e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome

>smart00356 ZnF_C3H1 zinc finger

Probab=94.83  E-value=0.014  Score=33.41  Aligned_cols=14  Identities=43%  Similarity=1.092  Sum_probs=12.6

Q ss_pred             cCCCCCCccccccC
Q psy12936         19 SCPNGPTCIYKHAL   32 (187)
Q Consensus        19 ~CPnG~~C~YrH~L   32 (187)
                      .|+.|+.|.|.|.+
T Consensus        14 ~C~~g~~C~~~H~~   27 (27)
T smart00356       14 YCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCCCCcCCCCcC
Confidence            79999999999964

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.78  E-value=0.01  Score=35.14  Aligned_cols=22  Identities=36%  Similarity=1.256  Sum_probs=16.0

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCcccccc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHA   31 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~   31 (187)
                      +|++|+..      |   .||.|+.|.|.|.
T Consensus         5 ~C~~f~~~------g---~C~~G~~C~f~H~   26 (27)
T PF00642_consen    5 LCRFFMRT------G---TCPFGDKCRFAHG   26 (27)
T ss_dssp             B-HHHHHT------S-----TTGGGSSSBSS
T ss_pred             cChhhccC------C---ccCCCCCcCccCC
Confidence            58999874      2   5999999999994

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=93.24  E-value=0.052  Score=30.06  Aligned_cols=13  Identities=38%  Similarity=1.104  Sum_probs=11.5

Q ss_pred             cCCCCCCcccccc
Q psy12936         19 SCPNGPTCIYKHA   31 (187)
Q Consensus        19 ~CPnG~~C~YrH~   31 (187)
                      .|+||++|.|+|.
T Consensus         7 ~C~~~~~C~f~HP   19 (19)
T PF14608_consen    7 NCTNGDNCPFSHP   19 (19)
T ss_pred             CCCCCCcCccCCc
Confidence            3999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 54/216 (25%)

Query: 1   ICKYFIEAVENSKYGWFWSC----PNGPTCIYKHALPPGFVLKKDKKKEE----KKDQIS 52
           + + F+E V    Y +  S        P+ + +      ++ ++D+   +     K  +S
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVS 132

Query: 53  LEDLIERERAALAASSKFTKVTLD-------SFLAWKKRKLKEKSEAMTKAEEKKRSDFK 105
                 + R AL        V +D       +++A          +     + + + DFK
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---------LDVCLSYKVQCKMDFK 183

Query: 106 A-----GRQVGLSGRDMF----SFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDL 156
                       S   +          +  +     D + +   +      ++  R L  
Sbjct: 184 IFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLK 239

Query: 157 DMLLNEA-AELDETNISQAKD-RVFD--------TR 182
                     L   N+  AK    F+        TR
Sbjct: 240 SKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTR 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	99.84
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.14
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.92
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	95.29
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	95.28
2rhk_C	72	Cleavage and polyadenylation specificity factor su	95.26
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	92.88
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	92.12
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	92.11
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.1
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	91.79
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	91.29
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	91.1
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	89.9
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	89.89
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	89.14
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	88.41
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	87.28
1lup_A	31	GSMTX2; inhibitor cysteine knot, beta-sheet, toxin	86.72
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	81.7

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.2e-23  Score=164.44  Aligned_cols=93  Identities=31%  Similarity=0.412  Sum_probs=56.3

Q ss_pred             HhhhcccChHHHHHHHHHHhc-cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccc-cccccCC
Q psy12936         45 EEKKDQISLEDLIERERAALA-ASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGR-DMFSFNP  122 (187)
Q Consensus        45 ee~~~eisLEE~iE~ER~kL~-~~~~gTpVT~EsFl~WKkkk~~Ek~~~~~~~~e~kk~~~kaGk~~~LSGR-ELFe~dp  122 (187)
                      +++.++|||||+||.||++|+ +|  +||||+|||++||+++++++.+..++.+++++   ++|+...|+|+ +.|.|+|
T Consensus        11 ~e~~~~ItlEe~iE~ER~kL~~~n--lTpVT~EtF~~WKk~k~~ek~~~~~~~~~kk~---~tGRei~~~g~~~~~~f~~   85 (142)
T 4a9a_C           11 LEKQPKITLEEFIETERGKLDKSK--LTPITIANFAQWKKDHVIAKINAEKKLSSKRK---PTGREIILKMSAENKSFET   85 (142)
T ss_dssp             CCSCCCCCHHHHHHTTGGGSCGGG--CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHC------
T ss_pred             HhcCCcCcHHHHHHHHHHhcCCCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHhcccccccccc
Confidence            456789999999999999994 57  99999999999999999998766654333221   34555555555 5666777


Q ss_pred             CCccCC-CCcCcccccccccC
Q psy12936        123 DLAKDD-MDEGDEAFDSYTRD  142 (187)
Q Consensus       123 ~L~~DD-~d~~dea~d~~~~~  142 (187)
                      .+..+| +++++++||...+.
T Consensus        86 d~~~~d~d~~~g~awDLs~~~  106 (142)
T 4a9a_C           86 DNADMPDDVTQGSAWDLTEFT  106 (142)
T ss_dssp             -------------CCCCHHHH
T ss_pred             ccccccccccccccccHHHHH
Confidence            776543 22334466665553

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.14  E-value=0.00014  Score=51.25  Aligned_cols=25  Identities=28%  Similarity=0.735  Sum_probs=19.7

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPpG   35 (187)
                      ||+|||.         +|.|++ ++|.|+|.+|++
T Consensus        46 ~C~~f~~---------~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           46 ECYFYSK---------FGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             BCHHHHH---------HSCCSB-TTCCSBCCCCC-
T ss_pred             cccccCC---------CCCCCC-CCeeccCCCccc
Confidence            4777776         478999 999999999975

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.00039  Score=49.18  Aligned_cols=25  Identities=24%  Similarity=0.689  Sum_probs=20.1

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPpG   35 (187)
                      ||+|||.         +..|+ |++|.|+|.+|+.
T Consensus        40 ~C~~f~~---------~G~C~-~~~C~f~H~~~~~   64 (77)
T 2d9n_A           40 ECYFYSK---------FGECS-NKECPFLHIDPES   64 (77)
T ss_dssp             BCHHHHH---------TCCCC-CSSCSSBCCCTTS
T ss_pred             CCcccCC---------CCccC-CCCeeccCCCccc
Confidence            5888877         24799 6999999999864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=95.29  E-value=0.0063  Score=45.03  Aligned_cols=24  Identities=29%  Similarity=0.674  Sum_probs=18.3

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      +|+||+.         ...||+|+.|.|.|...
T Consensus        38 ~C~~f~~---------~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           38 PCKLYHT---------TGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             BCSHHHH---------TSCCSSCTTCSSBCCCC
T ss_pred             cCcCccc---------CCcCCCCCCCcccCCCC
Confidence            4777764         24699999999999855

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.28  E-value=0.0049  Score=43.45  Aligned_cols=24  Identities=25%  Similarity=0.737  Sum_probs=20.9

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP   34 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp   34 (187)
                      ||+|||..          .|.+|++|.|.|.+.+
T Consensus        12 ~C~~fl~G----------~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A           12 VCKHWLRG----------LCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             BCHHHHTT----------CCSCTTSSSSBCSCCT
T ss_pred             eCHhHccC----------cCCCCCCCCCcccccc
Confidence            79999973          3999999999999875

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=95.26  E-value=0.0037  Score=43.91  Aligned_cols=24  Identities=25%  Similarity=0.737  Sum_probs=20.6

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP   34 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp   34 (187)
                      ||+|||..          .|.+|++|.|.|.+.+
T Consensus        18 vCk~fl~G----------~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           18 VCKHWLRG----------LCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             BCHHHHTT----------CCCCGGGSSSBCSCCT
T ss_pred             eCHHHhcC----------CCCCCCCCCCcccccc
Confidence            79999983          3999999999999764

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=92.88  E-value=0.019  Score=39.52  Aligned_cols=15  Identities=33%  Similarity=0.891  Sum_probs=0.0

Q ss_pred             cCCCCCCccccccCC
Q psy12936         19 SCPNGPTCIYKHALP   33 (187)
Q Consensus        19 ~CPnG~~C~YrH~LP   33 (187)
                      .||+|++|.|.|..+
T Consensus        61 ~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           61 RCPYGSRCHFIHNPT   75 (77)
T ss_dssp             ---------------
T ss_pred             CCCCcCcCCCCCCCC
Confidence            355555555555543

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=92.12  E-value=0.042  Score=36.91  Aligned_cols=17  Identities=53%  Similarity=1.454  Sum_probs=14.9

Q ss_pred             CCCccccCCCCCCccccccC
Q psy12936         13 KYGWFWSCPNGPTCIYKHAL   32 (187)
Q Consensus        13 kYGwfW~CPnG~~C~YrH~L   32 (187)
                      -|||   ||+|.+|.+.|-+
T Consensus        28 ayGw---Cp~G~~Cp~SHDi   44 (50)
T 2fc6_A           28 AYGW---CPLGPQCPQSHDI   44 (50)
T ss_dssp             HTCC---CTTGGGCSSBCCC
T ss_pred             cccc---CCCCCCCCccccC
Confidence            3897   9999999999964

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=92.11  E-value=0.046  Score=37.74  Aligned_cols=25  Identities=20%  Similarity=0.720  Sum_probs=19.4

Q ss_pred             CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG   35 (187)
                      ||++|+.    |      .|.+|+ .|.|.|-....
T Consensus         8 vC~~f~~----G------~C~rg~~~C~f~H~~~~~   33 (70)
T 3d2q_A            8 VCREYQR----G------NCNRGENDCRFAHPADST   33 (70)
T ss_dssp             BCHHHHT----T------CCSSCTTTCSSBCCCTTS
T ss_pred             hCHHHhc----C------CCCCCCCCCCCccCcccc
Confidence            7999975    2      399998 59999977643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.10  E-value=0.03  Score=47.30  Aligned_cols=16  Identities=44%  Similarity=0.993  Sum_probs=14.7

Q ss_pred             cCCCCCCccccccCCC
Q psy12936         19 SCPNGPTCIYKHALPP   34 (187)
Q Consensus        19 ~CPnG~~C~YrH~LPp   34 (187)
                      .|+.|+.|.|+|-||.
T Consensus        80 ~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           80 MCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CCSCGGGCSSBBSCCC
T ss_pred             CCCCCCCCCccCCCCC
Confidence            5999999999999994

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=91.79  E-value=0.039  Score=38.12  Aligned_cols=22  Identities=27%  Similarity=0.768  Sum_probs=18.3

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      ||++||..          .|++| +|.|.|..|
T Consensus        44 vC~~flkG----------~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           44 VCMDYIKG----------RCSRE-KCKYFHPPA   65 (70)
T ss_dssp             BCHHHHTT----------CCCCT-TCCSBCCCH
T ss_pred             eccccCcC----------CCCCC-CcCeeCCHH
Confidence            69999842          59998 999999866

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=91.29  E-value=0.035  Score=41.00  Aligned_cols=23  Identities=30%  Similarity=0.808  Sum_probs=18.6

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      ||+||+.    |      .|.+|++|.|.|..+
T Consensus        15 lC~~f~~----G------~C~~G~~C~f~H~~~   37 (98)
T 2cqe_A           15 LCKFYIT----G------FCARAENCPYMHGDF   37 (98)
T ss_dssp             BCTTTTT----T------CCSCSTTCSSBSSSS
T ss_pred             cCccccc----C------cCCCCCCCCCCCCCC
Confidence            6999863    2      699999999999833

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=91.10  E-value=0.062  Score=36.87  Aligned_cols=25  Identities=28%  Similarity=0.770  Sum_probs=19.9

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP   34 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp   34 (187)
                      +|+||+..         -.|+.|++|.|.|.+..
T Consensus        14 ~C~~f~~~---------G~C~~G~~C~f~H~~~e   38 (77)
T 1m9o_A           14 LCRTYSES---------GRCRYGAKCQFAHGLGE   38 (77)
T ss_dssp             CCSGGGGT---------SCCTTTTTCSSCSSSCC
T ss_pred             hCHHhhhC---------CCcCCCCCccCCCCChh
Confidence            68888732         26999999999998864

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=89.90  E-value=0.11  Score=37.39  Aligned_cols=25  Identities=20%  Similarity=0.639  Sum_probs=19.7

Q ss_pred             CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG   35 (187)
                      ||++||.    |      .|.+|+ .|.|.|.++..
T Consensus        11 VCr~Flr----G------~C~r~d~~C~f~H~~~~~   36 (83)
T 3d2n_A           11 VCREFQR----G------TCSRPDTECKFAHPSKSC   36 (83)
T ss_dssp             BCTTGGG----T------CCCSCTTTCSSBCCCTTC
T ss_pred             hcHHHhc----C------CCCCCCCCCCCcCCCccc
Confidence            7888887    3      399986 99999988753

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.89  E-value=0.074  Score=39.36  Aligned_cols=25  Identities=24%  Similarity=0.761  Sum_probs=17.2

Q ss_pred             CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG   35 (187)
                      ||++||.    |      .|.+|+ .|.|.|-+...
T Consensus        22 VCr~Flr----G------~C~rgd~~C~FsH~~~~~   47 (98)
T 2e5s_A           22 VCREFQR----G------NCARGETDCRFAHPADST   47 (98)
T ss_dssp             BCSHHHH----T------CCSSHHHHCSSBCCSSCC
T ss_pred             hhHHHhc----C------cCCCCCCCCCCcCCchhc
Confidence            6888877    2      277776 68888776543

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.14  E-value=0.11  Score=38.37  Aligned_cols=22  Identities=27%  Similarity=0.726  Sum_probs=19.0

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      ||++||.-          .|++| +|+|.|..|
T Consensus        58 vC~~flkG----------~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           58 VCMDYIKG----------RCMRE-KCKYFHPPA   79 (98)
T ss_dssp             BCHHHHHT----------CCCCT-TCCSBCCCH
T ss_pred             cchhhccC----------CCCCC-CcCccCChH
Confidence            79999874          69998 999999876

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=88.41  E-value=0.28  Score=35.85  Aligned_cols=25  Identities=20%  Similarity=0.676  Sum_probs=21.0

Q ss_pred             CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG   35 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG   35 (187)
                      ||++|+.    |      .|.+|+ .|.|.|-.+.-
T Consensus        19 VCrdFlr----G------~C~r~d~~CrfsH~~~~~   44 (89)
T 2rpp_A           19 VCRQFQR----G------TCSRSDEECKFAHPPKSC   44 (89)
T ss_dssp             BCHHHHH----T------CCCCCTTTSSSBCCCSSS
T ss_pred             hchHHhc----C------CCCCCCCCCCCcCCCccc
Confidence            7999998    3      399997 99999988863

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=87.28  E-value=0.35  Score=38.56  Aligned_cols=12  Identities=17%  Similarity=0.169  Sum_probs=10.3

Q ss_pred             cCcccccccccC
Q psy12936        110 VGLSGRDMFSFN  121 (187)
Q Consensus       110 ~~LSGRELFe~d  121 (187)
                      .++|||+||...
T Consensus        65 k~~tGRei~~~g   76 (142)
T 4a9a_C           65 RKPTGREIILKM   76 (142)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             hhhhhHHHHHhc
Confidence            568999999975

>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A

Probab=86.72  E-value=0.3  Score=29.76  Aligned_cols=19  Identities=32%  Similarity=1.115  Sum_probs=14.6

Q ss_pred             CccccCCCCCCccccccCCCccccc
Q psy12936         15 GWFWSCPNGPTCIYKHALPPGFVLK   39 (187)
Q Consensus        15 GwfW~CPnG~~C~YrH~LPpG~Vlk   39 (187)
                      ||||.|-.+++|=      +|||-+
T Consensus         4 ~~f~~Cd~~~kCC------eg~vC~   22 (31)
T 1lup_A            4 KWMWTCDEERKCC------EGLVCR   22 (31)
T ss_dssp             SSSCBCCSSCCCC------SSSBCS
T ss_pred             cccccCCchhhhc------ccchHH
Confidence            8999998778774      677654

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=81.70  E-value=0.39  Score=34.54  Aligned_cols=22  Identities=27%  Similarity=0.677  Sum_probs=18.2

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      ||.+||--          .|.++ +|+|.|..+
T Consensus        45 vC~dflkG----------~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           45 ACFDSLKG----------RCSRE-NCKYLHPPP   66 (83)
T ss_dssp             CCHHHHTT----------CCCCS-SCSSCCCCH
T ss_pred             ehhHhhhc----------cccCC-CcceeCChH
Confidence            68888753          59997 999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	93.59
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.42
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	91.24
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	90.54
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	88.65
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	87.96

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.0044  Score=35.85  Aligned_cols=21  Identities=33%  Similarity=1.010  Sum_probs=17.7

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCcccccc
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHA   31 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~   31 (187)
                      +|||+|+.          -|.-|++|.|-|.
T Consensus         8 lCKfYvqG----------yCtrgenC~ymH~   28 (29)
T d2cqea2           8 LCKFYITG----------FCARAENCPYMHG   28 (29)
T ss_dssp             BCTTTTTT----------CCSCSTTCSSBSS
T ss_pred             hhhhheee----------eecCCcCcccccC
Confidence            58998875          3999999999994

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.01  Score=35.94  Aligned_cols=17  Identities=53%  Similarity=1.454  Sum_probs=14.4

Q ss_pred             CCCccccCCCCCCccccccC
Q psy12936         13 KYGWFWSCPNGPTCIYKHAL   32 (187)
Q Consensus        13 kYGwfW~CPnG~~C~YrH~L   32 (187)
                      -|||   ||||..|--.|-+
T Consensus        21 AyGW---CP~G~qCp~SHdi   37 (37)
T d2fc6a1          21 AYGW---CPLGPQCPQSHDI   37 (37)
T ss_dssp             HTCC---CTTGGGCSSBCCC
T ss_pred             hccc---cCCCCCCcccCcC
Confidence            3997   9999999988853

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.033  Score=33.19  Aligned_cols=23  Identities=35%  Similarity=1.006  Sum_probs=18.4

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHAL   32 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~L   32 (187)
                      +|++|..-      |   .||.|++|.|-|-.
T Consensus         8 lC~~~~~~------g---~C~~G~~C~FAHg~   30 (36)
T d1rgoa1           8 LCRPFEES------G---TCKYGEKCQFAHGF   30 (36)
T ss_dssp             BCHHHHHH------S---CCTTGGGCSSBSSG
T ss_pred             hCcchhcC------C---cCCCCCcCCCcCCH
Confidence            48888754      2   59999999999964

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.042  Score=32.41  Aligned_cols=23  Identities=35%  Similarity=0.889  Sum_probs=18.7

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHAL   32 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~L   32 (187)
                      +|++|...-         .||.|+.|.|-|..
T Consensus        10 lC~~f~~~g---------~C~yG~~C~FaHg~   32 (34)
T d1rgoa2          10 LCRTFHTIG---------FCPYGPRCHFIHNA   32 (34)
T ss_dssp             BCHHHHHHS---------CCTTGGGCSSBCCS
T ss_pred             hccccCCCC---------cCCCCCcccCcCCC
Confidence            589997642         69999999999964

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.057  Score=35.36  Aligned_cols=22  Identities=36%  Similarity=1.001  Sum_probs=17.5

Q ss_pred             chhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          2 CKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         2 Ck~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      ||||--.         =.|-||++|++.|+ |
T Consensus         3 CK~yHtg---------~kCy~gd~C~FSH~-p   24 (56)
T d2cqea1           3 CKLYHTT---------GNCINGDDCMFSHD-P   24 (56)
T ss_dssp             CSHHHHT---------SCCSSCTTCSSBCC-C
T ss_pred             cceeecC---------CcccCCCcccccCC-c
Confidence            7777643         35999999999995 6

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.96  E-value=0.073  Score=32.25  Aligned_cols=24  Identities=33%  Similarity=0.956  Sum_probs=18.2

Q ss_pred             CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936          1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP   33 (187)
Q Consensus         1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP   33 (187)
                      .|+||+.-      |   .||.|+.|.|-|...
T Consensus        11 lC~~~~~~------g---~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_          11 LCRTYSES------G---RCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CCSGGGGT------S---CCTTTTTCSSCSSSC
T ss_pred             cChhhhcC------C---cCCCCCCCCCCCCHH
Confidence            47776542      2   599999999999765