Psyllid ID: psy12937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MLRRSSYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccccHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEccccccHHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccEEEEEccccccEEccc
Coil and Loop (DISEMBL)
mlrrssysgylpclfqsgakckfshdltIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKhgeaekkrptTTIICKYFIEAVENskygwfwscpngpctfeng
Flexible Loop (DISEMBL)
mlrrssysgylpclfqsgakckfshdltierkaekrslyvdmrddgedvnetmenwdedklkevvekkhgeaekkrptttiICKYFIEAVENSKYGWFWSCPNGPCTFENG
Low Complexity Region (SEG)
MLRRSSYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWdedklkevvekkHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG
Disordered region (IsUnstruct)
*******SGYLPCLFQSGAKCKFSHDLTIE************************************************TTIICKYFIEAVENSKYGWFWSCPNGPCT****
Disordered Region (DISOPRED)
****SSYSGYLPCLFQSGAKCKFSHDLTI*RKAEKRSLYVDM**************DEDKL********************ICKYFIEAVENSKYGWFWSCPNGPCTF***
Disordered Region (DISEMBL)
********GYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG
Disordered Region (DISPRO)
*****SYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDG***NETMENWDEDKLKEVVEKKHG***KKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRRSSYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q803J8	433	Zinc finger CCCH domain-c	yes	N/A	0.783	0.200	0.712	5e-32
Q1RMM1	426	Zinc finger CCCH domain-c	yes	N/A	0.774	0.201	0.701	1e-31
Q8WU90	426	Zinc finger CCCH domain-c	yes	N/A	0.774	0.201	0.701	1e-31
Q6U6G5	426	Zinc finger CCCH domain-c	yes	N/A	0.774	0.201	0.689	2e-31
Q3TIV5	426	Zinc finger CCCH domain-c	yes	N/A	0.774	0.201	0.689	2e-31
Q5H7N8	429	Zinc finger CCCH domain-c	yes	N/A	0.765	0.198	0.693	3e-31
Q28Y69	406	Zinc finger CCCH domain-c	yes	N/A	0.747	0.204	0.712	8e-31
A4IGY3	426	Zinc finger CCCH domain-c	yes	N/A	0.774	0.201	0.701	1e-30
Q6DD06	426	Zinc finger CCCH domain-c	N/A	N/A	0.774	0.201	0.701	2e-30
Q7JWR9	404	Zinc finger CCCH domain-c	yes	N/A	0.738	0.202	0.689	2e-28

>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRSLYVD RDD     +TMENWDE KL+EVV KKHGEAEKK+ 
Sbjct: 116 GDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKA 175

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CKYF++A+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKYFLDAIENNKYGWFWVCPGG 202

Protects drg1 from proteolytic degradation.
Danio rerio (taxid: 7955)

>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201

Protects DRG1 from proteolytic degradation.

Bos taurus (taxid: 9913)

>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201

Protects DRG1 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+C++F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201

Protects DRG1 from proteolytic degradation.

Rattus norvegicus (taxid: 10116)

>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+C++F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201

Protects DRG1 from proteolytic degradation.

Mus musculus (taxid: 10090)

>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 3/88 (3%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDV-NETMENWDEDKLKEVVEKKHGEAEKKR 76
           G KCKFSHDL++ERK EKRS+Y+D RD  ED+  +TM+NWDE KL+EVV KKHGEAEKK+
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYIDARD--EDLEKDTMDNWDEKKLEEVVNKKHGEAEKKK 174

Query: 77  PTTTIICKYFIEAVENSKYGWFWSCPNG 104
           P T I+CKYF++A+EN+KYGWFW CP G
Sbjct: 175 PKTQIVCKYFLDAIENNKYGWFWVCPGG 202

Protects DRG1 from proteolytic degradation.

Gallus gallus (taxid: 9031)

>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 73/87 (83%), Gaps = 4/87 (4%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++E K EKRS+YVDMRD+ +D+   M NWD+ KLKEVV+KKH E EK+RP
Sbjct: 111 GDKCKFSHDLSLENKVEKRSMYVDMRDNEDDL---MTNWDDAKLKEVVDKKHSE-EKRRP 166

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           TT IICK+F+EAVE SKYGWFW CPNG
Sbjct: 167 TTEIICKFFLEAVEKSKYGWFWECPNG 193

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 73/87 (83%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRS+YVD RD+ E   +TMENWDE KL+EVV KKHGEAEK +P
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYVDGRDE-ELEKDTMENWDEKKLEEVVNKKHGEAEKIKP 175

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKFFLEAIENNKYGWFWVCPGG 202

Protects drg1 from proteolytic degradation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRS+YVD RDD E   +TMENWDE KL+EVV KKHGEAEK + 
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYVDGRDD-ELEKDTMENWDEKKLEEVVNKKHGEAEKIKA 175

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKFFLEAIENNKYGWFWVCPGG 202

Protects drg1 from proteolytic degradation.

Xenopus laevis (taxid: 8355)

>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 5/87 (5%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL+ E K EKRS+YVDMRD+    ++ M NWD+ KLKEVVEKK    EK+RP
Sbjct: 111 GDKCKFSHDLSQENKVEKRSIYVDMRDE----DDPMTNWDDAKLKEVVEKKSS-GEKQRP 165

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           TT IICK+F+EAVE SKYGWFW CPNG
Sbjct: 166 TTDIICKFFLEAVEKSKYGWFWECPNG 192

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
357629140	392	hypothetical protein KGM_01823 [Danaus p	0.747	0.211	0.781	1e-33
326319994	384	zinc finger CCCH domain-containing prote	0.765	0.221	0.770	9e-33
332372963	397	unknown [Dendroctonus ponderosae]	0.774	0.216	0.772	1e-31
289740917	407	immediate early response erythropoietin	0.747	0.203	0.747	4e-31
322800082	399	hypothetical protein SINV_10020 [Solenop	0.765	0.213	0.747	6e-31
432097545	401	Zinc finger CCCH domain-containing prote	0.774	0.214	0.712	1e-30
91093140	388	PREDICTED: similar to GA21225-PA [Tribol	0.747	0.213	0.770	1e-30
41054043	433	zinc finger CCCH domain-containing prote	0.783	0.200	0.712	2e-30
410900726	422	PREDICTED: zinc finger CCCH domain-conta	0.801	0.210	0.7	2e-30
410900728	423	PREDICTED: zinc finger CCCH domain-conta	0.801	0.210	0.7	2e-30

>gi|357629140|gb|EHJ78107.1| hypothetical protein KGM_01823 [Danaus plexippus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 75/87 (86%), Gaps = 4/87 (4%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL+IERKAEKRSLYVDMRDD     +TM+NWDEDKLKEVVEKKHGE  K+RP
Sbjct: 110 GDKCKFSHDLSIERKAEKRSLYVDMRDD----EDTMDNWDEDKLKEVVEKKHGEGNKQRP 165

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T IICK+F+EAVE SKYGWFW CP+G
Sbjct: 166 GTDIICKHFLEAVEKSKYGWFWECPSG 192

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326319994|ref|NP_001191866.1| zinc finger CCCH domain-containing protein 15 [Acyrthosiphon pisum]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 77/87 (88%), Gaps = 2/87 (2%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G+KCKFSHDL  E+KAEKRS+YVD+RD GE+ N+TMENWDEDKLKEVV KKHGE +KK P
Sbjct: 103 GSKCKFSHDLATEKKAEKRSMYVDLRD-GEE-NDTMENWDEDKLKEVVNKKHGETDKKHP 160

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           +T IIC +F+EAVE SKYGWFWSCPNG
Sbjct: 161 STDIICMFFLEAVEKSKYGWFWSCPNG 187

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372963|gb|AEE61623.1| unknown [Dendroctonus ponderosae]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEA-EKKR 76
           G KCKFSHDLTIERKAEKRSLYVDMRDD E+ N+TMENWDE+KLKEV+EKKHG+A   K 
Sbjct: 110 GDKCKFSHDLTIERKAEKRSLYVDMRDDDEE-NDTMENWDEEKLKEVIEKKHGKAVGGKL 168

Query: 77  PTTTIICKYFIEAVENSKYGWFWSCPNG 104
             T IICKYF++AVE SKYGWFW CP G
Sbjct: 169 AATDIICKYFVDAVEKSKYGWFWQCPAG 196

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740917|gb|ADD19206.1| immediate early response erythropoietin 4-like protein [Glossina morsitans morsitans]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 74/87 (85%), Gaps = 4/87 (4%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++E KAEKRS+YVDMRD+ ED    M+NWD+ KLKEVV++KHG  EK+RP
Sbjct: 110 GDKCKFSHDLSVENKAEKRSIYVDMRDETED---DMQNWDDAKLKEVVDQKHG-GEKRRP 165

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           TT IICKYFIEAVE SKYGWFW CPNG
Sbjct: 166 TTDIICKYFIEAVEKSKYGWFWECPNG 192

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800082|gb|EFZ21188.1| hypothetical protein SINV_10020 [Solenopsis invicta]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL+IERKAEKRSLY DMRDD +   +TM+ WDEDKLKEVVEKKHG     RP
Sbjct: 112 GDKCKFSHDLSIERKAEKRSLYCDMRDDDDKEMDTMDKWDEDKLKEVVEKKHGSG--NRP 169

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           TT IICK+F+EAVE SKYGWFW CP+G
Sbjct: 170 TTDIICKHFLEAVEKSKYGWFWECPSG 196

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432097545|gb|ELK27693.1| Zinc finger CCCH domain-containing protein 15, partial [Myotis davidii]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TMENWDE KL+EVV KKHGEAEKK+P
Sbjct: 91  GDKCKFSHDLTLERKGEKRSVYIDARDE-ELEKDTMENWDEKKLEEVVNKKHGEAEKKKP 149

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 150 KTQIVCKHFLEAIENNKYGWFWVCPGG 176

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91093140|ref|XP_969738.1| PREDICTED: similar to GA21225-PA [Tribolium castaneum] gi|270003015|gb|EEZ99462.1| hypothetical protein TcasGA2_TC000028 [Tribolium castaneum]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 73/87 (83%), Gaps = 4/87 (4%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL+IERKAEKRSLYVDMRDD E   ETMENWDE KL EV+EKKHG+   K P
Sbjct: 111 GDKCKFSHDLSIERKAEKRSLYVDMRDDEE---ETMENWDEQKLFEVIEKKHGKT-GKMP 166

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
           TT IICK+F+EAVE SKYGWFW CP+G
Sbjct: 167 TTDIICKHFLEAVEKSKYGWFWQCPSG 193

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|41054043|ref|NP_956182.1| zinc finger CCCH domain-containing protein 15 [Danio rerio] gi|82177059|sp|Q803J8.1|ZC3HF_DANRE RecName: Full=Zinc finger CCCH domain-containing protein 15 gi|27882083|gb|AAH44451.1| Zinc finger CCCH-type containing 15 [Danio rerio] gi|182890770|gb|AAI65333.1| Zc3h15 protein [Danio rerio]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRSLYVD RDD     +TMENWDE KL+EVV KKHGEAEKK+ 
Sbjct: 116 GDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKA 175

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNG 104
            T I+CKYF++A+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKYFLDAIENNKYGWFWVCPGG 202

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410900726|ref|XP_003963847.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform 1 [Takifugu rubripes]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRSLYVD RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLSVERKCEKRSLYVDERDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNGPCT 107
            T I+CK+F++A+ENSKYGWFW CP G  T
Sbjct: 175 KTQIVCKHFLDAIENSKYGWFWVCPGGADT 204

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410900728|ref|XP_003963848.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform 2 [Takifugu rubripes]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G KCKFSHDL++ERK EKRSLYVD RD+ E   +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLSVERKCEKRSLYVDERDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNGPCT 107
            T I+CK+F++A+ENSKYGWFW CP G  T
Sbjct: 175 KTQIVCKHFLDAIENSKYGWFWVCPGGADT 204

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
UNIPROTKB|Q1RMM1	426	ZC3H15 "Zinc finger CCCH domai	0.774	0.201	0.597	9.4e-27
UNIPROTKB|F1PEL5	418	ZC3H15 "Uncharacterized protei	0.774	0.205	0.597	9.4e-27
UNIPROTKB|Q8WU90	426	ZC3H15 "Zinc finger CCCH domai	0.774	0.201	0.597	9.4e-27
UNIPROTKB|F1RYJ5	426	ZC3H15 "Uncharacterized protei	0.774	0.201	0.597	9.4e-27
UNIPROTKB|F1NGV1	403	ZC3H15 "Zinc finger CCCH domai	0.765	0.210	0.590	1.5e-26
UNIPROTKB|Q5H7N8	429	ZC3H15 "Zinc finger CCCH domai	0.765	0.198	0.590	1.5e-26
ZFIN|ZDB-GENE-030131-6239	433	zc3h15 "zinc finger CCCH-type	0.783	0.200	0.609	1.5e-26
MGI|MGI:1919747	426	Zc3h15 "zinc finger CCCH-type	0.774	0.201	0.586	1.9e-26
RGD|1359234	426	Zc3h15 "zinc finger CCCH-type	0.774	0.201	0.586	1.9e-26
UNIPROTKB|F1NSE2	468	ZC3H15 "Zinc finger CCCH domai	0.765	0.181	0.590	2.8e-26

UNIPROTKB|Q1RMM1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+CK+F+EA+EN+KYGWFW CP G
Sbjct:   175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PEL5 ZC3H15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   108 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 166

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+CK+F+EA+EN+KYGWFW CP G
Sbjct:   167 KTQIVCKHFLEAIENNKYGWFWVCPGG 193

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8WU90 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+CK+F+EA+EN+KYGWFW CP G
Sbjct:   175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RYJ5 ZC3H15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+CK+F+EA+EN+KYGWFW CP G
Sbjct:   175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NGV1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/88 (59%), Positives = 65/88 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVN-ETMENWXXXXXXXXXXXXHGEAEKKR 76
             G KCKFSHDL++ERK EKRS+Y+D RD  ED+  +TM+NW            HGEAEKK+
Sbjct:    91 GDKCKFSHDLSLERKCEKRSVYIDARD--EDLEKDTMDNWDEKKLEEVVNKKHGEAEKKK 148

Query:    77 PTTTIICKYFIEAVENSKYGWFWSCPNG 104
             P T I+CKYF++A+EN+KYGWFW CP G
Sbjct:   149 PKTQIVCKYFLDAIENNKYGWFWVCPGG 176

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

UNIPROTKB|Q5H7N8 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/88 (59%), Positives = 65/88 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVN-ETMENWXXXXXXXXXXXXHGEAEKKR 76
             G KCKFSHDL++ERK EKRS+Y+D RD  ED+  +TM+NW            HGEAEKK+
Sbjct:   117 GDKCKFSHDLSLERKCEKRSVYIDARD--EDLEKDTMDNWDEKKLEEVVNKKHGEAEKKK 174

Query:    77 PTTTIICKYFIEAVENSKYGWFWSCPNG 104
             P T I+CKYF++A+EN+KYGWFW CP G
Sbjct:   175 PKTQIVCKYFLDAIENNKYGWFWVCPGG 202

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-030131-6239 zc3h15 "zinc finger CCCH-type containing 15" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 53/87 (60%), Positives = 62/87 (71%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDL++ERK EKRSLYVD RDD     +TMENW            HGEAEKK+ 
Sbjct:   116 GDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKA 175

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+CKYF++A+EN+KYGWFW CP G
Sbjct:   176 KTQIVCKYFLDAIENNKYGWFWVCPGG 202

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1919747 Zc3h15 "zinc finger CCCH-type containing 15" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 51/87 (58%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+C++F+EA+EN+KYGWFW CP G
Sbjct:   175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1359234 Zc3h15 "zinc finger CCCH-type containing 15" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 51/87 (58%), Positives = 64/87 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWXXXXXXXXXXXXHGEAEKKRP 77
             G KCKFSHDLT+ERK EKRS+Y+D RD+ E   +TM+NW            HGEAEKK+P
Sbjct:   116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174

Query:    78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
              T I+C++F+EA+EN+KYGWFW CP G
Sbjct:   175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1NSE2 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 52/88 (59%), Positives = 65/88 (73%)

Query:    18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVN-ETMENWXXXXXXXXXXXXHGEAEKKR 76
             G KCKFSHDL++ERK EKRS+Y+D RD  ED+  +TM+NW            HGEAEKK+
Sbjct:   156 GDKCKFSHDLSLERKCEKRSVYIDARD--EDLEKDTMDNWDEKKLEEVVNKKHGEAEKKK 213

Query:    77 PTTTIICKYFIEAVENSKYGWFWSCPNG 104
             P T I+CKYF++A+EN+KYGWFW CP G
Sbjct:   214 PKTQIVCKYFLDAIENNKYGWFWVCPGG 241

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q803J8	ZC3HF_DANRE	No assigned EC number	0.7126	0.7837	0.2009	yes	N/A
Q8WU90	ZC3HF_HUMAN	No assigned EC number	0.7011	0.7747	0.2018	yes	N/A
A4IGY3	ZC3HF_XENTR	No assigned EC number	0.7011	0.7747	0.2018	yes	N/A
Q3TIV5	ZC3HF_MOUSE	No assigned EC number	0.6896	0.7747	0.2018	yes	N/A
Q12000	TMA46_YEAST	No assigned EC number	0.6091	0.7387	0.2376	yes	N/A
Q9SK74	C3H21_ARATH	No assigned EC number	0.5505	0.7567	0.2264	yes	N/A
Q1RMM1	ZC3HF_BOVIN	No assigned EC number	0.7011	0.7747	0.2018	yes	N/A
Q5H7N8	ZC3HF_CHICK	No assigned EC number	0.6931	0.7657	0.1981	yes	N/A
Q7JWR9	ZC3HF_DROME	No assigned EC number	0.6896	0.7387	0.2029	yes	N/A
Q28Y69	ZC3HF_DROPS	No assigned EC number	0.7126	0.7477	0.2044	yes	N/A
Q93618	ZC3HF_CAEEL	No assigned EC number	0.55	0.8018	0.2379	yes	N/A
Q54DA5	ZC3HF_DICDI	No assigned EC number	0.5368	0.7927	0.2359	yes	N/A
Q6U6G5	ZC3HF_RAT	No assigned EC number	0.6896	0.7747	0.2018	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
COG5252	299	COG5252, COG5252, Uncharacterized conserved protei	2e-16

>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 20/90 (22%)

Query: 18  GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
           G  CKF+H     RK EK  LY D+RD  EDV   +                   ++   
Sbjct: 99  GDACKFAHGKEEARKTEKPDLYSDVRDKEEDV--PLG------------------KRPWI 138

Query: 78  TTTIICKYFIEAVENSKYGWFWSCPNGPCT 107
            T  +CK+FIEA+E+ KYGW W+CPNG   
Sbjct: 139 NTDRVCKFFIEAMESGKYGWGWTCPNGNMR 168

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG1763|consensus	343		100.0
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	99.97
KOG1040|consensus	325		91.28
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	90.04
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	89.06
smart00356	27	ZnF_C3H1 zinc finger.	86.76
PF01396	39	zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc	80.21

>KOG1763|consensus

Probab=100.00  E-value=3e-48  Score=320.42  Aligned_cols=90  Identities=63%  Similarity=1.272  Sum_probs=85.3

Q ss_pred             ceeeee------ccCCccccCCCchhHHHhhhhhhhhcccccCcccchhhhhccHHHHHHHHHhhhcccccCCCcchhhh
Q psy12937         10 YLPCLF------QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIIC   83 (111)
Q Consensus        10 ~~~C~f------~KG~KCKFSHDl~~~rk~eK~dlY~D~Rd~~~e~~dtmd~WDe~kLe~VV~~Khg~~~k~~~~TdiVC   83 (111)
                      .++|+|      +||++|||||||+++|+.+|+|||.|+|++       |  ||+++|++||++|||+   ++++|+|||
T Consensus        92 SvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rde-------m--WD~~kl~~vv~~K~~k---~k~~tdiVC  159 (343)
T KOG1763|consen   92 SVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDE-------M--WDEEKLEEVVLKKHGK---PKPTTDIVC  159 (343)
T ss_pred             HHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhh-------h--hhHHHHHHHHHhhccC---CCCchhHHH
Confidence            478988      689999999999999999999999999975       5  9999999999999994   789999999


Q ss_pred             HHHHHHHHccccccceecCCC-C-cccccC
Q psy12937         84 KYFIEAVENSKYGWFWSCPNG-P-CTFENG  111 (111)
Q Consensus        84 K~FLeAvE~~kYGWFW~CPNG-d-C~YRHa  111 (111)
                      ||||||||+|+|||||+|||| + |+||||
T Consensus       160 KfFLeAvE~~kYGWfW~CPnGg~~C~YrHa  189 (343)
T KOG1763|consen  160 KFFLEAVENGKYGWFWECPNGGDKCIYRHA  189 (343)
T ss_pred             HHHHHHHhcCCccceeECCCCCCeeeeeec
Confidence            999999999999999999999 6 999997

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=99.97  E-value=6.3e-33  Score=225.67  Aligned_cols=76  Identities=43%  Similarity=0.911  Sum_probs=69.7

Q ss_pred             ccCCccccCCCchhHHHhhhhhhhhcccccCcccchhhhhccHHHHHHHHHhhhcccccCCCcchhhhHHHHHHHHcccc
Q psy12937         16 QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKY   95 (111)
Q Consensus        16 ~KG~KCKFSHDl~~~rk~eK~dlY~D~Rd~~~e~~dtmd~WDe~kLe~VV~~Khg~~~k~~~~TdiVCK~FLeAvE~~kY   95 (111)
                      .||+.|||+|+++..|+.||+|||.|.|++++  +++|+                +  .+.++||+||||||||+|+|+|
T Consensus        97 ~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~e--d~pl~----------------k--rP~intd~VCkffieA~e~GkY  156 (299)
T COG5252          97 AKGDACKFAHGKEEARKTEKPDLYSDVRDKEE--DVPLG----------------K--RPWINTDRVCKFFIEAMESGKY  156 (299)
T ss_pred             ccCchhhhhcchHHHhhhcccchhhhhhhhhc--cCCcc----------------c--CCCCChhHHHHHHHHHHhcCCc
Confidence            59999999999999999999999999999876  47776                1  1678999999999999999999


Q ss_pred             ccceecCCC-C-cccccC
Q psy12937         96 GWFWSCPNG-P-CTFENG  111 (111)
Q Consensus        96 GWFW~CPNG-d-C~YRHa  111 (111)
                      ||||.|||| + |+|+|+
T Consensus       157 gw~W~CPng~~~C~y~H~  174 (299)
T COG5252         157 GWGWTCPNGNMRCSYIHK  174 (299)
T ss_pred             cceeeCCCCCceeeeeec
Confidence            999999999 6 999996

>KOG1040|consensus

Probab=91.28  E-value=0.13  Score=43.41  Aligned_cols=38  Identities=24%  Similarity=0.553  Sum_probs=29.2

Q ss_pred             CCCceeeee------ccCCccccCCCchhH--HHhhhhhhhhcccc
Q psy12937          7 YSGYLPCLF------QSGAKCKFSHDLTIE--RKAEKRSLYVDMRD   44 (111)
Q Consensus         7 ~~~~~~C~f------~KG~KCKFSHDl~~~--rk~eK~dlY~D~Rd   44 (111)
                      -++-++|-+      .||+.|-|+|+.++-  |.+-.-++|.+-..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~  119 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTN  119 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhhhhccccccccccccccccc
Confidence            456789987      799999999987765  45666777777665

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=90.04  E-value=0.16  Score=26.43  Aligned_cols=12  Identities=42%  Similarity=1.126  Sum_probs=10.3

Q ss_pred             ecCCCC-cccccC
Q psy12937        100 SCPNGP-CTFENG  111 (111)
Q Consensus       100 ~CPNGd-C~YRHa  111 (111)
                      .|+||+ |.|.|.
T Consensus         7 ~C~~~~~C~f~HP   19 (19)
T PF14608_consen    7 NCTNGDNCPFSHP   19 (19)
T ss_pred             CCCCCCcCccCCc
Confidence            499995 999994

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.06  E-value=0.15  Score=28.08  Aligned_cols=12  Identities=42%  Similarity=0.891  Sum_probs=10.4

Q ss_pred             ccCCccccCCCc
Q psy12937         16 QSGAKCKFSHDL   27 (111)
Q Consensus        16 ~KG~KCKFSHDl   27 (111)
                      ..|++|+|+|+.
T Consensus        16 ~~G~~C~f~H~~   27 (27)
T PF00642_consen   16 PFGDKCRFAHGE   27 (27)
T ss_dssp             TTGGGSSSBSSG
T ss_pred             CCCCCcCccCCC
Confidence            579999999983

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=86.76  E-value=0.35  Score=25.26  Aligned_cols=12  Identities=50%  Similarity=1.082  Sum_probs=10.3

Q ss_pred             ccCCccccCCCc
Q psy12937         16 QSGAKCKFSHDL   27 (111)
Q Consensus        16 ~KG~KCKFSHDl   27 (111)
                      ..|..|.|+|++
T Consensus        16 ~~g~~C~~~H~~   27 (27)
T smart00356       16 PYGDRCKFAHPL   27 (27)
T ss_pred             CCCCCcCCCCcC
Confidence            579999999984

>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i

Probab=80.21  E-value=1.2  Score=26.58  Aligned_cols=20  Identities=30%  Similarity=0.694  Sum_probs=16.5

Q ss_pred             HHccccccceecCCC-Ccccc
Q psy12937         90 VENSKYGWFWSCPNG-PCTFE  109 (111)
Q Consensus        90 vE~~kYGWFW~CPNG-dC~YR  109 (111)
                      +..+++|.||.|.|= +|.|.
T Consensus        13 ~r~~k~g~F~~Cs~yP~C~~~   33 (39)
T PF01396_consen   13 LRRGKKGKFLGCSNYPECKYT   33 (39)
T ss_pred             EEECCCCCEEECCCCCCcCCe
Confidence            346899999999996 59985

e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 45  DGEDVNETMEN-WDEDKLKEVVEKKHGEAEKKRPTTTI------ICKYFIEAVENSKYGW 97
           D +DV +  ++   ++++  ++  K   +   R   T+      + + F+E V    Y +
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 98  FWS 100
             S
Sbjct: 94  LMS 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.36
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.35
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.01
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.53
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	96.99
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.82
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	95.39
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	94.24
2rhk_C	72	Cleavage and polyadenylation specificity factor su	92.62
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	92.34
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	89.09
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	85.37
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	83.86

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.36  E-value=8e-08  Score=62.83  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=18.3

Q ss_pred             hhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937         81 IICKYFIEAVENSKYGWFWSCPNGPCTFENG  111 (111)
Q Consensus        81 iVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa  111 (111)
                      ++|+|||.         ++.|++.+|.|+|.
T Consensus        45 ~~C~~f~~---------~G~C~~~~C~y~H~   66 (72)
T 2rhk_C           45 SECYFYSK---------FGECSNKECPFLHI   66 (72)
T ss_dssp             CBCHHHHH---------HSCCSBTTCCSBCC
T ss_pred             CcccccCC---------CCCCCCCCeeccCC
Confidence            48999998         57999933999995

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.5e-07  Score=61.64  Aligned_cols=20  Identities=25%  Similarity=0.760  Sum_probs=16.3

Q ss_pred             ceeeee------ccCCccccCCCchh
Q psy12937         10 YLPCLF------QSGAKCKFSHDLTI   29 (111)
Q Consensus        10 ~~~C~f------~KG~KCKFSHDl~~   29 (111)
                      -++|.|      .+|++|+||||++.
T Consensus        10 ~~~C~~fl~G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A           10 TVVCKHWLRGLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             TSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred             ceeCHhHccCcCCCCCCCCCcccccc
Confidence            467765      68999999999874

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.01  E-value=1.4e-06  Score=59.84  Aligned_cols=22  Identities=32%  Similarity=0.736  Sum_probs=18.2

Q ss_pred             hhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937         81 IICKYFIEAVENSKYGWFWSCPNGP-CTFENG  111 (111)
Q Consensus        81 iVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa  111 (111)
                      .+|++|+.         ...||+|+ |.|.|.
T Consensus        37 ~~C~~f~~---------~G~C~~G~~C~f~H~   59 (98)
T 2cqe_A           37 FPCKLYHT---------TGNCINGDDCMFSHD   59 (98)
T ss_dssp             SBCSHHHH---------TSCCSSCTTCSSBCC
T ss_pred             CcCcCccc---------CCcCCCCCCCcccCC
Confidence            68999985         24799997 999994

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.53  E-value=1.8e-05  Score=50.30  Aligned_cols=22  Identities=36%  Similarity=0.889  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937         81 IICKYFIEAVENSKYGWFWSCPNGP-CTFENG  111 (111)
Q Consensus        81 iVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa  111 (111)
                      .+|++|+.      .|   .||+|+ |.|.|.
T Consensus        51 ~~C~~f~~------~G---~C~~G~~C~f~H~   73 (77)
T 1m9o_A           51 ELCHKFKL------QG---RCPYGSRCHFIHN   73 (77)
T ss_dssp             --------------------------------
T ss_pred             Ccccchhh------Cc---CCCCcCcCCCCCC
Confidence            68998864      44   799997 999994

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=96.99  E-value=0.00034  Score=44.85  Aligned_cols=24  Identities=25%  Similarity=0.732  Sum_probs=19.6

Q ss_pred             cchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937         78 TTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG  111 (111)
Q Consensus        78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa  111 (111)
                      ....||++||.       |   .|++|+|.|.|.
T Consensus        40 ~~~~vC~~flk-------G---~C~r~~C~y~H~   63 (70)
T 3d2q_A           40 NTVTVCMDYIK-------G---RCSREKCKYFHP   63 (70)
T ss_dssp             TEEEBCHHHHT-------T---CCCCTTCCSBCC
T ss_pred             CcceeccccCc-------C---CCCCCCcCeeCC
Confidence            45679999984       2   899988999994

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.82  E-value=0.00023  Score=48.92  Aligned_cols=25  Identities=20%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             CcchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937         77 PTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG  111 (111)
Q Consensus        77 ~~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa  111 (111)
                      +..-.||.+||.-          .|++|.|.|.|.
T Consensus        53 ~~~~~vC~~flkG----------~C~r~~C~y~H~   77 (98)
T 2e5s_A           53 DNTVTVCMDYIKG----------RCMREKCKYFHP   77 (98)
T ss_dssp             TCEEEBCHHHHHT----------CCCCTTCCSBCC
T ss_pred             CCccccchhhccC----------CCCCCCcCccCC
Confidence            3567799999873          899988999994

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=95.39  E-value=0.0049  Score=41.26  Aligned_cols=24  Identities=17%  Similarity=0.456  Sum_probs=19.4

Q ss_pred             cchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937         78 TTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG  111 (111)
Q Consensus        78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa  111 (111)
                      .+-.||.+||--          .|.+|.|.|.|.
T Consensus        41 ~~~~vC~dflkG----------~C~r~~C~y~H~   64 (83)
T 3d2n_A           41 GRVIACFDSLKG----------RCSRENCKYLHP   64 (83)
T ss_dssp             TEEECCHHHHTT----------CCCCSSCSSCCC
T ss_pred             CceeehhHhhhc----------cccCCCcceeCC
Confidence            456899999852          799988999994

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=94.24  E-value=0.027  Score=38.23  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             chhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937         79 TTIICKYFIEAVENSKYGWFWSCPNGPCTFENG  111 (111)
Q Consensus        79 TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa  111 (111)
                      +-+||.+||-    |      .|.++.|+|.|.
T Consensus        50 ~~~vC~dflk----G------~C~r~~Cky~H~   72 (89)
T 2rpp_A           50 RVIACFDSLK----G------RCSRENCKYLHP   72 (89)
T ss_dssp             BEEBCHHHHH----T------CCCCTTCCSBCC
T ss_pred             ceeeehhhhh----C------cCCCCCcceecC
Confidence            4679999985    2      799977999994

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=92.62  E-value=0.031  Score=36.08  Aligned_cols=24  Identities=33%  Similarity=0.906  Sum_probs=19.6

Q ss_pred             CcchhhhHHHHHHHHccccccceecCCCC-ccccc
Q psy12937         77 PTTTIICKYFIEAVENSKYGWFWSCPNGP-CTFEN  110 (111)
Q Consensus        77 ~~TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRH  110 (111)
                      ....+||+|||.       |   .|.+|+ |.|.|
T Consensus        13 ~~k~~vCk~fl~-------G---~C~~G~~C~fsH   37 (72)
T 2rhk_C           13 GEKTVVCKHWLR-------G---LCKKGDQCEFLH   37 (72)
T ss_dssp             CCCCSBCHHHHT-------T---CCCCGGGSSSBC
T ss_pred             CCcCeeCHHHhc-------C---CCCCCCCCCCcc
Confidence            355689999997       3   399997 99998

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.34  E-value=0.055  Score=34.88  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=15.0

Q ss_pred             hhhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937         80 TIICKYFIEAVENSKYGWFWSCPNGP-CTFENG  111 (111)
Q Consensus        80 diVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa  111 (111)
                      ..+|+|||.         +..|+ |+ |.|+|.
T Consensus        38 ~~~C~~f~~---------~G~C~-~~~C~f~H~   60 (77)
T 2d9n_A           38 MPECYFYSK---------FGECS-NKECPFLHI   60 (77)
T ss_dssp             SCBCHHHHH---------TCCCC-CSSCSSBCC
T ss_pred             CCCCcccCC---------CCccC-CCCeeccCC
Confidence            346777776         24788 55 888884

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=89.09  E-value=0.15  Score=40.32  Aligned_cols=70  Identities=19%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             cCCccccCCCchhHHHhhhhhhhhcccccCcccchhhhhccHHHHHHHHHhhhcccccCCCcchhhhHHHHHHHHccccc
Q psy12937         17 SGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYG   96 (111)
Q Consensus        17 KG~KCKFSHDl~~~rk~eK~dlY~D~Rd~~~e~~dtmd~WDe~kLe~VV~~Khg~~~k~~~~TdiVCK~FLeAvE~~kYG   96 (111)
                      .+..||||||+..+.-..-+      |      +-..+.-+++.|...+.|.--      .--.-||+|| .+  +|.||
T Consensus       106 ~~~~Ck~SHdi~s~~N~~vL------k------~h~l~~L~~~eL~~LLLQnDp------~lLPeiC~~Y-kG--~g~~g  164 (229)
T 3u9g_A          106 QRNLCKYSHDVLSEQNFQIL------K------NHELSGLNQEELACLLVQSDP------FFLPEICKSY-KG--EGRKQ  164 (229)
T ss_dssp             CSSCCSSCSCTTCHHHHHHH------H------HTTCTTCCHHHHHHHHHTTCG------GGSCCBCTTC-CC--SSSCC
T ss_pred             CCCCcccccccCchhHHHHH------H------HcCcccCCHhHhhheeccCCC------ccCchHHHHh-CC--CCCCC
Confidence            57889999999875311110      0      123455677888888776321      1223467776 33  34444


Q ss_pred             cceecCCCC-ccccc
Q psy12937         97 WFWSCPNGP-CTFEN  110 (111)
Q Consensus        97 WFW~CPNGd-C~YRH  110 (111)
                         .|..++ |..-|
T Consensus       165 ---~C~~~~~C~kLH  176 (229)
T 3u9g_A          165 ---TCGQPQPCERLH  176 (229)
T ss_dssp             ---SCSSSSCCCSBC
T ss_pred             ---cCCCCCCCccee
Confidence               566554 65544

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=85.37  E-value=0.093  Score=35.56  Aligned_cols=24  Identities=29%  Similarity=0.934  Sum_probs=19.2

Q ss_pred             cchhhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937         78 TTTIICKYFIEAVENSKYGWFWSCPNGP-CTFENG  111 (111)
Q Consensus        78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa  111 (111)
                      ....+|+||+.       |   .|.+|+ |.|.|.
T Consensus        11 ~k~~lC~~f~~-------G---~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYIT-------G---FCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTTT-------T---CCSCSTTCSSBSS
T ss_pred             CCCccCccccc-------C---cCCCCCCCCCCCC
Confidence            44579999974       3   899997 999993

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=83.86  E-value=0.23  Score=31.40  Aligned_cols=14  Identities=36%  Similarity=0.646  Sum_probs=12.4

Q ss_pred             ccCCccccCCCchh
Q psy12937         16 QSGAKCKFSHDLTI   29 (111)
Q Consensus        16 ~KG~KCKFSHDl~~   29 (111)
                      ..|.+|.||||.++
T Consensus        33 p~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           33 PLGPQCPQSHDISG   46 (50)
T ss_dssp             TTGGGCSSBCCCCC
T ss_pred             CCCCCCCccccCCC
Confidence            47999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.69
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	89.8
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	84.34

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0011  Score=41.41  Aligned_cols=15  Identities=47%  Similarity=0.782  Sum_probs=12.4

Q ss_pred             ccCCccccCCCchhH
Q psy12937         16 QSGAKCKFSHDLTIE   30 (111)
Q Consensus        16 ~KG~KCKFSHDl~~~   30 (111)
                      .-|++|+|||++-.+
T Consensus        13 y~gd~C~FSH~pLt~   27 (56)
T d2cqea1          13 INGDDCMFSHDPLTE   27 (56)
T ss_dssp             SSCTTCSSBCCCCCH
T ss_pred             cCCCcccccCCccCH
Confidence            479999999997654

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.03  Score=32.13  Aligned_cols=26  Identities=58%  Similarity=1.350  Sum_probs=20.0

Q ss_pred             CCcchhhhHHHHHHHHccccccceecCCCC-ccccc
Q psy12937         76 RPTTTIICKYFIEAVENSKYGWFWSCPNGP-CTFEN  110 (111)
Q Consensus        76 ~~~TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRH  110 (111)
                      ++-+.-||.-|      .-|||   ||||- |---|
T Consensus         9 ~~~~~~iC~~F------sAyGW---CP~G~qCp~SH   35 (37)
T d2fc6a1           9 RPHPTSICDNF------SAYGW---CPLGPQCPQSH   35 (37)
T ss_dssp             CCCCSCBCSHH------HHTCC---CTTGGGCSSBC
T ss_pred             CCCccchhhhh------hhccc---cCCCCCCcccC
Confidence            44566789998      45998   99995 97766

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.34  E-value=0.15  Score=28.01  Aligned_cols=22  Identities=36%  Similarity=0.896  Sum_probs=17.5

Q ss_pred             hhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937         81 IICKYFIEAVENSKYGWFWSCPNGP-CTFENG  111 (111)
Q Consensus        81 iVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa  111 (111)
                      ..|++|.+.-         .||.|+ |.|-|.
T Consensus         9 ~lC~~f~~~g---------~C~yG~~C~FaHg   31 (34)
T d1rgoa2           9 ELCRTFHTIG---------FCPYGPRCHFIHN   31 (34)
T ss_dssp             SBCHHHHHHS---------CCTTGGGCSSBCC
T ss_pred             hhccccCCCC---------cCCCCCcccCcCC
Confidence            4699996632         799997 999984