Psyllid ID: psy12987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDYK
Secondary Structure (PSIPRED)
cccEEEcEEEEEEcccccccccccccccccccEEEEcccccEEEEEEEEcccEEEEEEEEccccEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccccccccHHHHcccccccccccccccccEEEEEEEEcccEEEEEEEEcccccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MAPIKFARVVsyssedpvhkadnllnpestkkwkcksMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVakssnpddyk
Flexible Loop (DISEMBL)
mapikfarvvsyssedpvhkadnllnpestkkWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFvakssnpddyk
Low Complexity Region (SEG)
MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDYK
Disordered region (IsUnstruct)
**********************************C****EKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVA*********
Disordered Region (DISOPRED)
***IKFARVVSYS***P**KADNLLNPESTKKW*******K*AVAILQLSSQVQINGIDIGNEFSAFVEVFVAK********
Disordered Region (DISEMBL)
MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAK********
Disordered Region (DISPRO)
*APIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9ESZ0	631	DNA repair protein XRCC1	yes	N/A	0.939	0.122	0.454	6e-13
P18887	633	DNA repair protein XRCC1	yes	N/A	0.939	0.121	0.454	9e-13
Q60596	631	DNA repair protein XRCC1	yes	N/A	0.939	0.122	0.454	2e-12
O54935	633	DNA repair protein XRCC1	yes	N/A	0.926	0.120	0.473	4e-12
Q6ZNB5	142	Putative short transient	no	N/A	0.975	0.563	0.426	1e-09

>sp|Q9ESZ0|XRCC1_RAT DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H+A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEISLRHVVSCSSQDSTHRAENLLKADTYRKWRSAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77

Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents.
Rattus norvegicus (taxid: 10116)

>sp|P18887|XRCC1_HUMAN DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77

Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents.

Homo sapiens (taxid: 9606)

>sp|Q60596|XRCC1_MOUSE DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77

Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents.

Mus musculus (taxid: 10090)

>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 49/76 (64%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H A+NLL  ++ +KW+  + GEK    +LQL  + QI+ IDI
Sbjct: 1  MPEISLRHVVSGSSQDSTHCAENLLKADTYRKWRAATAGEKTISVVLQLEKEEQIHSIDI 60

Query: 61 GNEFSAFVEVFVAKSS 76
          GN+ SAFVEV V +S+
Sbjct: 61 GNDGSAFVEVLVTRSA 76

Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents.

Cricetulus griseus (taxid: 10029)

>sp|Q6ZNB5|TRC2L_HUMAN Putative short transient receptor potential channel 2-like protein OS=Homo sapiens PE=5 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKK-W-KCKSMGEKQAVAILQLSSQVQINGI 58
          MAP+K + VVS+SS+DP +  +NLLNP+S ++ W  C      Q    LQL   V    I
Sbjct: 1  MAPVKISHVVSFSSQDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYI 60

Query: 59 DIGNEFSAFVEVFVAKSSNPDD 80
          D+GN   AF+++ V  SS P D
Sbjct: 61 DVGNCGCAFLQIDVGHSSWPLD 82

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
241570173	235	DNA-repair protein xrcc1, putative [Ixod	0.939	0.327	0.610	1e-17
91080991	533	PREDICTED: similar to DNA-repair protein	1.0	0.153	0.524	1e-16
270005349	556	hypothetical protein TcasGA2_TC007398 [T	1.0	0.147	0.524	1e-16
312381959	619	hypothetical protein AND_05657 [Anophele	0.939	0.124	0.525	1e-15
260836947	644	hypothetical protein BRAFLDRAFT_277469 [	0.975	0.124	0.537	3e-15
337743301	102	XRCC1 [Kryptolebias marmoratus]	0.975	0.784	0.537	4e-15
340375016	555	PREDICTED: DNA repair protein XRCC1-like	1.0	0.147	0.5	8e-15
51571935	615	DNA repair protein XRCC1 [Danio rerio] g	0.975	0.130	0.537	1e-14
410904431	620	PREDICTED: DNA repair protein XRCC1-like	0.926	0.122	0.526	3e-14
348527426	622	PREDICTED: DNA repair protein XRCC1-like	0.926	0.122	0.539	3e-14

>gi|241570173|ref|XP_002402668.1| DNA-repair protein xrcc1, putative [Ixodes scapularis] gi|215502056|gb|EEC11550.1| DNA-repair protein xrcc1, putative [Ixodes scapularis]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 55/77 (71%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK   VVS+SSED VHKA+NLL  E  +KWKC + GEKQA  ILQL     I+ IDI
Sbjct: 1  MPVIKLQHVVSFSSEDKVHKAENLLKSERYRKWKCATAGEKQASVILQLEKASVISSIDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GNE SAF+EV VA+SS+
Sbjct: 61 GNESSAFIEVLVARSSD 77

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080991|ref|XP_975029.1| PREDICTED: similar to DNA-repair protein XRCC1 (X-ray repair cross-complementing protein 1) [Tribolium castaneum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 56/82 (68%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK   VVS+SSED VH A+N+LN +  KKWKCK  GE+ A  +LQL     I+ +DI
Sbjct: 1  MPKIKLDHVVSFSSEDSVHVANNVLNSDPAKKWKCKDAGERSATIVLQLEKASLISALDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDDYK 82
          GNE SA++EV V++S   DD+K
Sbjct: 61 GNENSAYIEVLVSRSGTTDDFK 82

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005349|gb|EFA01797.1| hypothetical protein TcasGA2_TC007398 [Tribolium castaneum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 56/82 (68%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK   VVS+SSED VH A+N+LN +  KKWKCK  GE+ A  +LQL     I+ +DI
Sbjct: 1  MPKIKLDHVVSFSSEDSVHVANNVLNSDPAKKWKCKDAGERSATIVLQLEKASLISALDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDDYK 82
          GNE SA++EV V++S   DD+K
Sbjct: 61 GNENSAYIEVLVSRSGTTDDFK 82

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381959|gb|EFR27566.1| hypothetical protein AND_05657 [Anopheles darlingi]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 3/80 (3%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  +KF  + S+SSEDP + A NLL P++ +KWKC+  GE+ A  +++L   VQI+GIDI
Sbjct: 1  MPTVKFKAIESFSSEDPNYPASNLLRPDN-RKWKCRQPGEQTAFVVIRLEEPVQISGIDI 59

Query: 61 GNEFSAFVEVFVAKS--SNP 78
          GNE SAF+EV VA+S  +NP
Sbjct: 60 GNEHSAFIEVLVARSGPANP 79

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260836947|ref|XP_002613467.1| hypothetical protein BRAFLDRAFT_277469 [Branchiostoma floridae] gi|229298852|gb|EEN69476.1| hypothetical protein BRAFLDRAFT_277469 [Branchiostoma floridae]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 53/80 (66%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I   +VVS+SSED  H A+NLL  E+ +KWK  S+GEKQ  AI+Q     QI+ IDI
Sbjct: 1  MPEIHLQKVVSFSSEDKTHTAENLLKSETYRKWKSGSVGEKQVTAIIQFDEPSQIHSIDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDD 80
          GNE SAFVEV V ++S   D
Sbjct: 61 GNENSAFVEVLVGRASAQSD 80

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|337743301|gb|AEI73147.1| XRCC1 [Kryptolebias marmoratus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 52/80 (65%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK  RVVS SSED  HKA+NLL+ ++ +KWK    GEKQ   ILQ   + Q++ IDI
Sbjct: 1  MPEIKLKRVVSCSSEDSTHKANNLLSSDTYRKWKAARPGEKQTSVILQFEKEEQVHSIDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDD 80
          GNE SAF+EV V  SS   D
Sbjct: 61 GNEGSAFIEVLVGNSSAVRD 80

Source: Kryptolebias marmoratus

Species: Kryptolebias marmoratus

Genus: Kryptolebias

Order: Cyprinodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340375016|ref|XP_003386033.1| PREDICTED: DNA repair protein XRCC1-like [Amphimedon queenslandica]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK   V S SSEDP H ADNLL  E+ +KW+C S GEKQAV +++      I+ +DI
Sbjct: 1  MPEIKLKHVCSVSSEDPNHPADNLLGQETYRKWQCDSAGEKQAVVVIEFDKASVIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDDYK 82
          GN  SAF+EV V  S +  DY+
Sbjct: 61 GNNGSAFIEVLVGNSLSSSDYE 82

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|51571935|ref|NP_001003988.1| DNA repair protein XRCC1 [Danio rerio] gi|51330093|gb|AAH80268.1| Zgc:91996 [Danio rerio] gi|182890918|gb|AAI65774.1| Zgc:91996 protein [Danio rerio]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 53/80 (66%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  +K   VVS SSED  HKADNLL+ ++ +KWK    GEKQ   ILQL  + QI+ IDI
Sbjct: 1  MPELKLKHVVSCSSEDNTHKADNLLSSDTYRKWKAARPGEKQVSVILQLEKEEQIHSIDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDD 80
          GNE SAF+EV V  S++  D
Sbjct: 61 GNEGSAFIEVLVGHSTSVKD 80

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410904431|ref|XP_003965695.1| PREDICTED: DNA repair protein XRCC1-like [Takifugu rubripes]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 51/76 (67%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS S+EDP H+A+NLLN ++ +KWK    GEKQ   ILQ   + QI+ IDI
Sbjct: 1  MPEIEVKHVVSCSTEDPTHRAENLLNFDTYRKWKAARPGEKQISVILQFEKEEQIHSIDI 60

Query: 61 GNEFSAFVEVFVAKSS 76
          GNE SAF+E+ V  SS
Sbjct: 61 GNEGSAFIEILVGNSS 76

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348527426|ref|XP_003451220.1| PREDICTED: DNA repair protein XRCC1-like [Oreochromis niloticus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 50/76 (65%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  IK   VVS S+ED  HKADNLL+ ++ +KWK    GEKQ   ILQ   + Q++ IDI
Sbjct: 1  MPEIKLKHVVSCSTEDSTHKADNLLSSDTYRKWKAARPGEKQISVILQFEKEEQVHSIDI 60

Query: 61 GNEFSAFVEVFVAKSS 76
          GNE SAF+EV V  SS
Sbjct: 61 GNEGSAFIEVLVGNSS 76

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
ZFIN|ZDB-GENE-040822-30	617	xrcc1 "X-ray repair complement	0.975	0.129	0.537	1.4e-15
FB|FBgn0026751	614	XRCC1 "XRCC1" [Drosophila mela	0.975	0.130	0.475	5.4e-13
RGD|619823	631	Xrcc1 "X-ray repair complement	0.926	0.120	0.460	1.9e-12
UNIPROTKB|Q9ESZ0	631	Xrcc1 "DNA repair protein XRCC	0.926	0.120	0.460	1.9e-12
UNIPROTKB|F1PEQ7	629	XRCC1 "Uncharacterized protein	0.926	0.120	0.460	3.2e-12
UNIPROTKB|P18887	633	XRCC1 "DNA repair protein XRCC	0.926	0.120	0.460	3.2e-12
UNIPROTKB|F1RMW4	652	XRCC1 "Uncharacterized protein	0.926	0.116	0.460	3.4e-12
MGI|MGI:99137	631	Xrcc1 "X-ray repair complement	0.926	0.120	0.460	5.2e-12
UNIPROTKB|F1N2F9	646	XRCC1 "Uncharacterized protein	0.926	0.117	0.447	1.5e-11
UNIPROTKB|E9PJ82	89	E9PJ82 "Uncharacterized protei	0.975	0.898	0.426	2e-10

ZFIN|ZDB-GENE-040822-30 xrcc1 "X-ray repair complementing defective repair in Chinese hamster cells 1" [Danio rerio (taxid:7955)]

 Score = 205 (77.2 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 43/80 (53%), Positives = 53/80 (66%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  +K   VVS SSED  HKADNLL+ ++ +KWK    GEKQ   ILQL  + QI+ IDI
Sbjct:     1 MPELKLKHVVSCSSEDNTHKADNLLSSDTYRKWKAARPGEKQVSVILQLEKEEQIHSIDI 60

Query:    61 GNEFSAFVEVFVAKSSNPDD 80
             GNE SAF+EV V  S++  D
Sbjct:    61 GNEGSAFIEVLVGHSTSVKD 80

GO:0000012 "single strand break repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0026751 XRCC1 "XRCC1" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 39/82 (47%), Positives = 51/82 (62%)

Query:     3 PIK-FARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG 61
             PI  F  V   SSED VH A NLL   + KKW+ K+ GEK A  +L+     QI GIDIG
Sbjct:     2 PIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFEEPQQITGIDIG 61

Query:    62 NEFSAFVEVFVAKSS-NPDDYK 82
             NE +AF+EV V+++    DD++
Sbjct:    62 NEHAAFIEVLVSRTGCQADDFR 83

GO:0006289 "nucleotide-excision repair" evidence=ISS;NAS

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000012 "single strand break repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0006285 "base-excision repair, AP site formation" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

RGD|619823 Xrcc1 "X-ray repair complementing defective repair in Chinese hamster cells 1" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I    VVS SS+D  H+A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:     1 MPEISLRHVVSCSSQDSTHRAENLLKADTYRKWRSAKAGEKTISVVLQLEKEEQIHSVDI 60

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    61 GNDGSAFVEVLVGSSA 76

GO:0000012 "single strand break repair" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006284 "base-excision repair" evidence=TAS

GO:0006974 "response to DNA damage stimulus" evidence=IEP

GO:0010033 "response to organic substance" evidence=IEP

GO:0021766 "hippocampus development" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

UNIPROTKB|Q9ESZ0 Xrcc1 "DNA repair protein XRCC1" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I    VVS SS+D  H+A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:     1 MPEISLRHVVSCSSQDSTHRAENLLKADTYRKWRSAKAGEKTISVVLQLEKEEQIHSVDI 60

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    61 GNDGSAFVEVLVGSSA 76

GO:0000012 "single strand break repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|F1PEQ7 XRCC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:     1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    61 GNDGSAFVEVLVGSSA 76

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000012 "single strand break repair" evidence=IEA

UNIPROTKB|P18887 XRCC1 "DNA repair protein XRCC1" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:     1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    61 GNDGSAFVEVLVGSSA 76

GO:0000012 "single strand break repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0010033 "response to organic substance" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006284 "base-excision repair" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1RMW4 XRCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:    15 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 74

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    75 GNDGSAFVEVLVGSSA 90

GO:0021766 "hippocampus development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000012 "single strand break repair" evidence=IEA

MGI|MGI:99137 Xrcc1 "X-ray repair complementing defective repair in Chinese hamster cells 1" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 35/76 (46%), Positives = 47/76 (61%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I    VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:     1 MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    61 GNDGSAFVEVLVGSSA 76

GO:0000012 "single strand break repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0021766 "hippocampus development" evidence=IMP

UNIPROTKB|F1N2F9 XRCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 34/76 (44%), Positives = 48/76 (63%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
             M  I+   VVS SS+D  + A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct:    15 MPEIRLRHVVSCSSQDSTYCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 74

Query:    61 GNEFSAFVEVFVAKSS 76
             GN+ SAFVEV V  S+
Sbjct:    75 GNDGSAFVEVLVGSSA 90

GO:0021766 "hippocampus development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000012 "single strand break repair" evidence=IEA

UNIPROTKB|E9PJ82 E9PJ82 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 35/82 (42%), Positives = 48/82 (58%)

Query:     1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKK-WK-CKSMGEKQAVAILQLSSQVQINGI 58
             MAP+K + VVS+SS+DP +  +NLLNP+S ++ W  C      Q    LQL   V    I
Sbjct:     1 MAPVKISHVVSFSSQDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYI 60

Query:    59 DIGNEFSAFVEVFVAKSSNPDD 80
             D+GN   AF+++ V  SS P D
Sbjct:    61 DVGNCGCAFLQIDVGHSSWPLD 82

GO:0000012 "single strand break repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
pfam01834	153	pfam01834, XRCC1_N, XRCC1 N terminal domain	3e-17

>gnl|CDD|202000 pfam01834, XRCC1_N, XRCC1 N terminal domain

 Score = 70.6 bits (172), Expect = 3e-17
 Identities = 35/76 (46%), Positives = 47/76 (61%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSS 76
          GN+ SAFVEV V  S+
Sbjct: 61 GNDGSAFVEVLVGSSA 76

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF01834	153	XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002	100.0
KOG3226|consensus	508		100.0
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	97.36
PF00754	129	F5_F8_type_C: F5/8 type C domain; InterPro: IPR000	97.08
cd00057	143	FA58C Substituted updates: Jan 31, 2002	96.79
PF03561	152	Allantoicase: Allantoicase repeat; InterPro: IPR01	96.78
cd08666	134	APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H	96.64
PF06588	199	Muskelin_N: Muskelin N-terminus; InterPro: IPR0105	95.72
PF03256	193	APC10: Anaphase-promoting complex, subunit 10 (APC	95.71
cd08159	129	APC10-like APC10-like DOC1 domains in E3 ubiquitin	95.71
KOG3437|consensus	184		95.2
cd08667	131	APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri	95.01
cd08365	131	APC10-like1 APC10-like DOC1 domains of E3 ubiquiti	95.0
cd08665	131	APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit	93.91
cd08664	152	APC10-HERC2 APC10-like DOC1 domain present in HERC	93.22
TIGR02961	322	allantoicase allantoicase. A different but similar	92.72
PRK13257	336	allantoicase; Provisional	92.09
PRK13797	516	putative bifunctional allantoicase/OHCU decarboxyl	90.62
TIGR02961	322	allantoicase allantoicase. A different but similar	88.49
PRK13797	516	putative bifunctional allantoicase/OHCU decarboxyl	86.31
PRK13257	336	allantoicase; Provisional	84.28
PF00055	237	Laminin_N: Laminin N-terminal (Domain VI); InterPr	83.53
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	81.03

>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []

Probab=100.00  E-value=3.4e-47  Score=270.42  Aligned_cols=78  Identities=58%  Similarity=0.838  Sum_probs=69.2

Q ss_pred             CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCC
Q psy12987          1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNP   78 (82)
Q Consensus         1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~   78 (82)
                      ||+|||+|||||||||+.|||||||++|+||+|+|+++||++++|||||+||++|++|||||+||||||||||||+|+
T Consensus         1 Mp~ik~k~VvS~SSed~~~~A~NLL~~d~~r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN~gSAfiEVlVg~S~~~   78 (153)
T PF01834_consen    1 MPEIKLKHVVSFSSEDPVHPAENLLKSDTYRKWKCAKAGEKQASVELQLEKASQITSIDIGNEGSAFIEVLVGRSSWS   78 (153)
T ss_dssp             --BCGEEEEEEESSS-SSSHGGGGSCGGGCHHEEHSSTT-SEEEEEEEEEEEE--SEEEEEEEB-SEEEEEEE-STTS
T ss_pred             CCcceeeEEEEEeCCCCCCchhhccCcccCCcccccCCCCceEEEEEEecCceEEEEEeccCCCeEEEEEEeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999996

The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.

>KOG3226|consensus

Probab=100.00  E-value=9.4e-36  Score=237.65  Aligned_cols=82  Identities=46%  Similarity=0.727  Sum_probs=80.5

Q ss_pred             CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCC-CC
Q psy12987          1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSN-PD   79 (82)
Q Consensus         1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~-~~   79 (82)
                      ||++.|+||++|||||.+|+|+|||+.++|||||++.+|||+++|+|||++|++|++|||||+|+|||||||||+++ .|
T Consensus         1 MP~~~~k~V~~~SSeDa~H~A~NLLK~~a~kKWRt~~~GEKs~~VVLe~E~~qQI~~iDIGNe~aAFiEVLV~~t~~~~~   80 (508)
T KOG3226|consen    1 MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFEEPQQITGIDIGNEHAAFIEVLVSRTGCQAD   80 (508)
T ss_pred             CchhhhhhhhhccccchHHHHHHHHhhhhcchhhhcCCCCceeEEEEEecccceeeeeeccCCcceeeeeeeccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CCC
Q psy12987         80 DYK   82 (82)
Q Consensus        80 ~f~   82 (82)
                      ||.
T Consensus        81 D~~   83 (508)
T KOG3226|consen   81 DFR   83 (508)
T ss_pred             hHH
Confidence            884

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=97.36  E-value=0.00046  Score=48.21  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=57.2

Q ss_pred             ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC-------CCCeEEEEEEeeccC
Q psy12987          7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG-------NEFSAFVEVFVAKSS   76 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG-------N~gSAfiEvlVg~s~   76 (82)
                      ..+.++||.-+.|.++||++.++..=|+.  +|.+.-+|.|||.|...|+.+-|=       +|-=.-|.|.+|.+.
T Consensus         6 ~a~w~vSS~k~g~gv~~L~D~~~~TyWQS--Dg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~   80 (139)
T cd08366           6 LAVWSLSSAKPGNGVDQLRDDSLDTYWQS--DGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSP   80 (139)
T ss_pred             CEEEEEEeCCCCCCHHHhcCCCCCccCCC--CCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCc
Confidence            45789999999999999999888888994  678889999999999999988543       344578889988874

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain

Probab=97.08  E-value=0.0026  Score=39.66  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=41.3

Q ss_pred             EEeecCCCC-C---ccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCe
Q psy12987         10 VSYSSEDPV-H---KADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS   65 (82)
Q Consensus        10 vs~SSEd~~-h---paeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gS   65 (82)
                      ++.||+-.. +   +++|+++.+....|.+.. +....++.+.|.++..|.+|.|-....
T Consensus         2 itaSS~~~~~~~~~~~~~~~Dg~~~t~W~~~~-~~~~~~i~idl~~~~~i~~i~i~~~~~   60 (129)
T PF00754_consen    2 ITASSSYSGYYSAEPASNAFDGDPSTAWCSNW-DDSPQWIQIDLGKPYTISGISIQFRND   60 (129)
T ss_dssp             EEESSCSTTSSSGGGGGGGGSSSTTSSEEESS-SSSTEEEEEEEEEEEEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCCcchHHheEeCCCCCEEECCC-CCCCceEEEEeeeeEecceeeeccccc
Confidence            456666444 3   599999999778999873 445567777799999999999964433

In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....

>cd00057 FA58C Substituted updates: Jan 31, 2002

Probab=96.79  E-value=0.0036  Score=40.61  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             EEEeecCCC-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC
Q psy12987          9 VVSYSSEDP-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF   64 (82)
Q Consensus         9 Vvs~SSEd~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g   64 (82)
                      =|+.||.+. .|+++|+ +.+....|.+.. ++..-++.+.|.++..|..|-|=..+
T Consensus        13 ~vtaSS~~~~~~~~~~~-dg~~~t~W~~~~-~~~~~wi~vDL~~~~~i~~v~i~~~~   67 (143)
T cd00057          13 QITASSSYSSGWEASRA-RLNSDNAWTPAV-NDPPQWLQVDLGKTRRVTGIQTQGRK   67 (143)
T ss_pred             CEEEEecCCCCCCcCee-ecCCCCcccCCC-CCCCceEEEECCCCEEEEEEEEccCC
Confidence            357788877 8999999 888777898763 34556888889999999999887554

>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions

Probab=96.78  E-value=0.0047  Score=43.95  Aligned_cols=53  Identities=34%  Similarity=0.483  Sum_probs=36.1

Q ss_pred             eEEEeecCCCCCccccccCCCCCC--------------CeeecCC-CceeEEEEEecCCcceeeEEEeC
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTK--------------KWKCKSM-GEKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r--------------~W~~~~~-Ge~~~~V~lql~~~~~I~~IDIG   61 (82)
                      .|+.||.+.=. +++|||+++...              +|.+++- ....=+++|+|-.|-.|.+|+|=
T Consensus         3 ~vv~~SD~~f~-~~~nll~p~~~~~~~~~f~~~g~~~DGWETrRrr~~g~DW~IikLg~~G~I~~i~ID   70 (152)
T PF03561_consen    3 RVVACSDEFFA-PAENLLKPGRPVFKPGKFDENGKMMDGWETRRRRDPGHDWAIIKLGAPGVIRGIEID   70 (152)
T ss_dssp             EEEEES--SCC--GGGCC-SSS-S----------SGGCSEE--SS-STT-EEEEEE-SSSCEEEEEEEE
T ss_pred             EEEEEcccccc-cHHHhcCCCCCcccccccccccccccceeeccccCCCCCEEEEECCCCCEEEEEEEe
Confidence            68999998775 789999987766              8888743 23458999999999999999983

While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.

>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination

Probab=96.64  E-value=0.005  Score=43.30  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeCC------CCeEEEEEEeec
Q psy12987         10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIGN------EFSAFVEVFVAK   74 (82)
Q Consensus        10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIGN------~gSAfiEvlVg~   74 (82)
                      +++||.-+.|.++||++.+...=|+  ++|.+ ..+|-|||.+-..|+.+-|-.      |-=.-|.|.+|.
T Consensus        10 isvSS~k~g~gv~~L~D~~~~tyWQ--SdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~   79 (134)
T cd08666          10 IEVSSYTDDFNVSCLTDGDPDTYWE--SDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE   79 (134)
T ss_pred             EEEEcCCCCCCHHHhccCCCCccEe--cCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC
Confidence            5789999999999999988878899  46777 799999999999998887753      333556777776

This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i

>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats

Probab=95.72  E-value=0.026  Score=42.23  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=45.8

Q ss_pred             eEEEeecCCCCCccccccCC---CCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC
Q psy12987          8 RVVSYSSEDPVHKADNLLNP---ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF   64 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~---~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g   64 (82)
                      .|.+|||=.+.|-++|.|..   |...+|-+... ...=+++|+|++|+.++.|-.|-+.
T Consensus         8 ~I~~~Ssys~~y~P~NIlvd~P~dqsSRWss~~~-~~~QyiiLkL~~paiV~sItFGKy~   66 (199)
T PF06588_consen    8 EIHSCSSYSSNYHPENILVDKPNDQSSRWSSSSN-SPPQYIILKLESPAIVKSITFGKYE   66 (199)
T ss_pred             EEEEecccCCccChhheeecCCCCccccccCCCC-CCCcEEEEEcCCCeEEEEEeccccc
Confidence            58899999999999999963   44457998843 3445899999999999999999764

Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].

>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=95.71  E-value=0.012  Score=43.14  Aligned_cols=68  Identities=22%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             ceEEEeecCCCCCcccccc-CCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC-------CCCeEEEEEEeeccC
Q psy12987          7 ARVVSYSSEDPVHKADNLL-NPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG-------NEFSAFVEVFVAKSS   76 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL-~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG-------N~gSAfiEvlVg~s~   76 (82)
                      ..+.+.||--+.|+++|+| +.++..=|+.  +|.+..+|.|+|.|-+.|+.|-|-       +|-=.-|.|.+|.+.
T Consensus        33 ~a~w~vSS~K~g~gv~~~LrD~~~~TyWQS--DG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~  108 (193)
T PF03256_consen   33 LAVWSVSSCKPGFGVAELLRDGSTETYWQS--DGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNSP  108 (193)
T ss_dssp             GSEEEES--BTTBSCHGHCHSS-TT--EE----SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred             ceEEEEecCCCCCCchheeeCCChhHhhcc--CCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCCc
Confidence            3477899999999999999 7777778994  788889999999999999988763       244477888888773

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.

>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=95.71  E-value=0.032  Score=38.76  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             eEEEeecCCCCCccccccCCCCCCCeeecCCCcee-EEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQ-AVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS   75 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~-~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s   75 (82)
                      .+.++||--+  .++||++.+...=|+  ++|.+- ..+.|+|.|...|+.+-|-      +|--.-|.|.+|.+
T Consensus         5 a~w~vSS~k~--gv~~L~D~~~~tyWQ--SdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~   75 (129)
T cd08159           5 ASIEVSSNPL--PVSRLTDGNYDTYWQ--SDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHS   75 (129)
T ss_pred             EEEEEecCcc--cHHHhcCCCCCccCC--CCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCC
Confidence            4678899877  999999988888899  456554 5688999999999988773      45556777777776

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f

>KOG3437|consensus

Probab=95.20  E-value=0.009  Score=44.21  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=36.7

Q ss_pred             eceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEE
Q psy12987          6 FARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGI   58 (82)
Q Consensus         6 ~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~I   58 (82)
                      ...+.++||   .||++||++.+...-|+  .+|.+-..+.+||.|-..|.++
T Consensus        27 ~~A~ws~sS---g~pvd~l~Ddn~etyWq--SdG~~PH~i~I~F~K~~~I~~v   74 (184)
T KOG3437|consen   27 LLALWSLSS---GFPVDNLRDDNPETYWQ--SDGSQPHLINIQFHKRVDIQYV   74 (184)
T ss_pred             HHhhccccc---CCChHHhhcCChhHhee--cCCCCCeEEEEEEEeEEEEEEE
Confidence            344556666   99999999877666899  5687888899999886666654

>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs

Probab=95.01  E-value=0.11  Score=36.27  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=47.5

Q ss_pred             EEeecCCCCCccccccCCCCCCCeeecCCCc-eeEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987         10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGE-KQAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS   75 (82)
Q Consensus        10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge-~~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s   75 (82)
                      +++||--+  .+++|++.+...=|+  ++|. +..+|-|||.+-..|..|-|-      +|--.-|.|.+|.+
T Consensus         7 ~~vSS~k~--gv~~L~D~~~~TYWQ--SDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~~   75 (131)
T cd08667           7 IEVSSNSA--DIDRMTDGETSTYWQ--SDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGRS   75 (131)
T ss_pred             EEEEcChh--hhHHhhcCCCCccCc--cCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecCC
Confidence            45666655  799999988778899  5676 478999999999999985442      45556788888766

This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.

>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=95.00  E-value=0.055  Score=37.81  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987         10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS   75 (82)
Q Consensus        10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s   75 (82)
                      +++||--+  -+++|++.+...=|+  ++|.+ ..+|-|||.+-..|..|-|-      +|--.-|.|.+|.+
T Consensus         8 i~vSS~k~--gv~~L~D~~~~tyWQ--SDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~~   76 (131)
T cd08365           8 IEVSSNPA--DASRLTDGNTSTYWQ--SDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGRS   76 (131)
T ss_pred             EEEEcCch--hHHHhhcCCCCceEc--cCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecCC
Confidence            56777755  899999988888899  56777 68999999999999988664      45556777777776

This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te

>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination

Probab=93.91  E-value=0.34  Score=33.96  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             CCCccccccCCCCCCCeeecCCCc-eeEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987         17 PVHKADNLLNPESTKKWKCKSMGE-KQAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS   75 (82)
Q Consensus        17 ~~hpaeNLL~~~~~r~W~~~~~Ge-~~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s   75 (82)
                      ..|-|++|++.+...=|+  ++|. +..+|-|||.|-..|+.|-|-      +|-=+-|.|.+|.+
T Consensus        12 n~~~~~~L~D~~~~tyWQ--SdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~~   75 (131)
T cd08665          12 NPHRANKLTDGNPKTYWE--SNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGDS   75 (131)
T ss_pred             CcccHHHhhcCCCCceEc--cCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecCC
Confidence            456799999988878899  5576 579999999999999988764      44456778888776

This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui

>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2)

Probab=93.22  E-value=0.4  Score=34.48  Aligned_cols=61  Identities=26%  Similarity=0.351  Sum_probs=48.5

Q ss_pred             EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987         10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS   75 (82)
Q Consensus        10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s   75 (82)
                      +++||-  .|-|++|++. +..-|+  ++|.+ +.+|-|||.+-..|+++-|-      +|-=.-|.|.+|.+
T Consensus        31 ~~VSS~--~~~~~~L~D~-~~TYWQ--SdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~~   98 (152)
T cd08664          31 LTVSSN--ENQAKRLIDG-SGSYWQ--SSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGDS   98 (152)
T ss_pred             EEEEcC--cccHHHhcCC-CCCeec--cCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecCC
Confidence            455665  6889999988 777899  45776 59999999999999998774      55667788888876

This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo

>TIGR02961 allantoicase allantoicase

Probab=92.72  E-value=0.24  Score=39.29  Aligned_cols=52  Identities=27%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             eEEEeecCCCCCccccccCCCCC----CCeeecC-CCceeEEEEEecCCcceeeEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPEST----KKWKCKS-MGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~----r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      .|+.||.+.=.+ ++|||.++..    -+|-+++ -....=+++++|-.|-.|..|+|
T Consensus       183 ~vl~~sD~~fg~-~~Nli~pg~~~~mgDGWETrRrR~pG~DW~IvkLg~~G~I~~i~V  239 (322)
T TIGR02961       183 VVVACSDAHFGH-PDNLIGPGRGRNMGDGWETARRRDPGNDWAIVRLGAPGEIERIEV  239 (322)
T ss_pred             EEEEecccccCC-HHHccCCCcccccccCcceeeccCCCCCEEEEEcCCCCeEEEEEE
Confidence            578888887665 7999998744    3788773 23345799999999999999998

A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.

>PRK13257 allantoicase; Provisional

Probab=92.09  E-value=0.34  Score=38.68  Aligned_cols=52  Identities=25%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             eEEEeecCCCCCccccccCCCCCC----CeeecCC-CceeEEEEEecCCcceeeEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTK----KWKCKSM-GEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r----~W~~~~~-Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      .|+.||.+.=. +++|||.++..+    +|-+++- ....=+++++|-.|-.|..|.|
T Consensus       194 ~v~~~SD~hfg-~~~Nll~Pg~~~~mgDGWETrRrR~pG~DW~iikLg~~G~I~~ieV  250 (336)
T PRK13257        194 RVVACSNQHFG-SPSNLLLPGRGVNMGDGWETRRRREPGNDWVIVALAAPGVIRKIEV  250 (336)
T ss_pred             EEEEecccccC-CHHHeeCCCcccccccccccccccCCCCCEEEEEcCCCCEEEEEEE
Confidence            57888887766 579999986543    7988743 2344799999999999999999

>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional

Probab=90.62  E-value=0.5  Score=39.51  Aligned_cols=63  Identities=21%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             eEEEeecCCCCCccccccCCCC----CCCeeecC-CCceeEEEEEecCCcceeeEEEe------CCCC-eEEEEEE
Q psy12987          8 RVVSYSSEDPVHKADNLLNPES----TKKWKCKS-MGEKQAVAILQLSSQVQINGIDI------GNEF-SAFVEVF   71 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~----~r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDI------GN~g-SAfiEvl   71 (82)
                      .|+.||.+.=.+ ++|||.+..    +-+|-+++ -+...=+++++|-.|-.|..|+|      ||+- ++-||-.
T Consensus       195 ~v~~~sD~~fg~-~~nli~pg~~~~mgDGWETrRrR~pg~Dw~iv~Lg~~G~I~~v~vDT~~FkGN~P~~~si~a~  269 (516)
T PRK13797        195 VVVAASDMHYGD-RHNLNASGDARAMGEGWETRRRRGPGHDWAVVRLATQGTIVRAEVDTRHFRGNAPRAVALWAA  269 (516)
T ss_pred             EEEEecccccCC-HHHccCCCCcccccccccccccCCCCCCEEEEEeCCCCEEEEEEEeCCccCCCCCCeEEEEEE
Confidence            578898887665 799999876    45898874 23345799999999999999998      6653 4445543

>TIGR02961 allantoicase allantoicase

Probab=88.49  E-value=1  Score=35.83  Aligned_cols=64  Identities=30%  Similarity=0.444  Sum_probs=46.1

Q ss_pred             eEEEeecCCCCCccccccCCCCC--------------CCeeecCCC-ceeEEEEEecCCcceeeEEEe------CCCC-e
Q psy12987          8 RVVSYSSEDPVHKADNLLNPEST--------------KKWKCKSMG-EKQAVAILQLSSQVQINGIDI------GNEF-S   65 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~--------------r~W~~~~~G-e~~~~V~lql~~~~~I~~IDI------GN~g-S   65 (82)
                      +|++||.|- -=+++|||+++..              -+|-+.+-. ..-=+++++|-.|-.|.+|||      ||+- +
T Consensus        13 ~vl~~sDe~-Fa~~~nLl~p~~~~f~~~~f~~~G~~~DGWETRRrR~~g~DW~ivkLg~~G~I~~v~vDTa~F~GN~p~~   91 (322)
T TIGR02961        13 KVLFASDEF-FAPAENLLKPEAPEFKPGVFDEFGKWMDGWETRRKRGAGHDWCIVRLGVPGVIHGVDIDTSFFTGNYPPA   91 (322)
T ss_pred             EEEEEccch-hcCHHhccCCCCCccccccccccCccccCccccccCCCCCCEEEEEeCCCcEEEEEEEeCcccCCCCCCe
Confidence            577887653 3478999997643              378877432 234699999999999999999      6653 4


Q ss_pred             EEEEEEe
Q psy12987         66 AFVEVFV   72 (82)
Q Consensus        66 AfiEvlV   72 (82)
                      +=||...
T Consensus        92 ~siea~~   98 (322)
T TIGR02961        92 VSIEACL   98 (322)
T ss_pred             EEEEEEe
Confidence            5566644

A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.

>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional

Probab=86.31  E-value=1.4  Score=36.87  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             eEEEeecCCCCCccccccCCCC--------------CCCeeecCCC--ceeEEEEEecCCcceeeEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSMG--EKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~G--e~~~~V~lql~~~~~I~~IDI   60 (82)
                      .|++||.|-= -+++|||+++.              +-+|-+.+-.  ..-=+++++|-.|-.|.+|+|
T Consensus        21 ~v~~~sD~~F-a~~~nll~p~~~~~~~~~f~~~G~~~DGWETrR~R~~~g~DW~iirLg~~g~i~~v~v   88 (516)
T PRK13797         21 TVVAVNDEFF-AFAERMLLAEPPVVRPGVFTERGQWTDGWETRRRRDLPGADWAIVRLGAPGIAHAVTV   88 (516)
T ss_pred             EEEEEccchh-cCHHhcCCCCCCccccccccccCccccCccccccCCCCCCCEEEEEeCCCcEEEEEEE
Confidence            5788876643 36899999763              2478777432  244799999999999999998

>PRK13257 allantoicase; Provisional

Probab=84.28  E-value=2.1  Score=34.27  Aligned_cols=52  Identities=27%  Similarity=0.445  Sum_probs=39.1

Q ss_pred             eEEEeecCCCCCccccccCCCC--------------CCCeeecCCC-ceeEEEEEecCCcceeeEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSMG-EKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~G-e~~~~V~lql~~~~~I~~IDI   60 (82)
                      +|++||.|-= =+++|||++..              +-+|-+.+-. ..-=+++++|-.|-.|.+|+|
T Consensus        28 ~vl~~sDe~F-a~~~nLl~p~~~~~~~~~f~~~Gk~~DGWETRRrR~~g~DW~IirLg~~G~I~~v~V   94 (336)
T PRK13257         28 QVLAASDEFF-AEKERMLNPEPAVFIPGKFDDHGKWMDGWETRRRRTTGHDWAIVRLGVPGVIRGVDV   94 (336)
T ss_pred             EEEEEchhhh-cCHHHccCCCCCccccccccccCccccCccccccCCCCCCEEEEEcCCCcEEEEEEE
Confidence            6788887643 36899999752              2478777422 234699999999999999998

>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue

Probab=83.53  E-value=2.4  Score=31.73  Aligned_cols=52  Identities=15%  Similarity=0.350  Sum_probs=30.1

Q ss_pred             EEeecCCC----CCccccccCCCC---CCCeeec--CCCc--eeEEEEEecCCcceeeEEEeC
Q psy12987         10 VSYSSEDP----VHKADNLLNPES---TKKWKCK--SMGE--KQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus        10 vs~SSEd~----~hpaeNLL~~~~---~r~W~~~--~~Ge--~~~~V~lql~~~~~I~~IDIG   61 (82)
                      ..|-+.+|    .||++||.+...   .+=|+..  ..|.  ..+.+.|.|.+.-+|++|-|-
T Consensus        42 ~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~~~~g~~~~~VtitLdL~~~f~v~~v~l~  104 (237)
T PF00055_consen   42 FICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSETLQNGVQYENVTITLDLGKEFEVTYVILQ  104 (237)
T ss_dssp             EEE-TTSTSTTT---GGGGCSSSCTTB---EEB--STTTTSTT-EEEEEEEEEEEEEEEEEEE
T ss_pred             ccCCCcccccccccChhhcccccccccCceecCCccCCCCcCcceEEEEcccceEEEEEEEEE
Confidence            34555544    799999998543   4567866  2454  467788888888888888763

Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=81.03  E-value=1.4  Score=29.26  Aligned_cols=55  Identities=22%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             CCccccccCCC---CCC--CeeecCCCceeEEEEEecCCcceeeEEEeCCC-------CeEE--EEEEeecc
Q psy12987         18 VHKADNLLNPE---STK--KWKCKSMGEKQAVAILQLSSQVQINGIDIGNE-------FSAF--VEVFVAKS   75 (82)
Q Consensus        18 ~hpaeNLL~~~---~~r--~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~-------gSAf--iEvlVg~s   75 (82)
                      .++++|+|.++   ...  =|-.  .| +..+|.+||.++..|++|-|.+.       .||.  +||.....
T Consensus         5 ~~~p~~il~~~~~~~~~g~Cw~~--~g-~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~   73 (135)
T PF07738_consen    5 AKPPSNILSPDKDSYMPGPCWAF--EG-SKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVD   73 (135)
T ss_dssp             ---GGGGGSS-----STT-SEEE--ET-T-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESS
T ss_pred             cCChhheECCCCCcccCCccCcc--CC-CceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEec
Confidence            46789999877   433  4633  34 44788889999999999998864       4454  55554433

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3k75_B	189	X-Ray Crystal Structure Of Reduced Xrcc1 Bound To D		4e-14
3k77_A	161	X-Ray Crystal Structure Of Xrcc1 Length = 161		4e-14
1xna_A	183	Nmr Solution Structure Of The Single-Strand Break R		1e-13

>pdb|3K75|B Chain B, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol Beta Catalytic Domain Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60
Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77

>pdb|3K77|A Chain A, X-Ray Crystal Structure Of Xrcc1 Length = 161

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60
Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77

>pdb|1XNA|A Chain A, Nmr Solution Structure Of The Single-Strand Break Repair Protein Xrcc1-N-Terminal Domain Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 4  IKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNE 63
          I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DIGN+
Sbjct: 4  IRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGND 63
Query: 64 FSAFVEVFVAKSSN 77
           SAFVEV V  S+ 
Sbjct: 64 GSAFVEVLVGSSAG 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3lqc_A	189	DNA repair protein XRCC1; allosteric disulfide, sc	4e-31

>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A* Length = 189

 Score =  106 bits (266), Expect = 4e-31
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDD 80
          GN+ SAFVEV V  S+    
Sbjct: 61 GNDGSAFVEVLVGSSAGGAG 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3lqc_A	189	DNA repair protein XRCC1; allosteric disulfide, sc	100.0
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	98.53
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	98.39
2j1a_A	150	Hyaluronidase, CBM32; protein-carbohydrate interac	97.26
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	97.26
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	97.12
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	97.03
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	96.93
3hnm_A	172	Putative chitobiase; PSI-2, protein structure init	96.36
2v72_A	143	CBM32, EXO-alpha-sialidase; galactose, bacterial p	96.35
4a3z_A	161	GH89_CBM32, alpha-N-acetylglucosaminidase family p	96.24
1jhj_A	171	APC10; beta sandwich, jellyroll, cell cycle; 1.60A	96.09
1o59_A	355	Allantoicase; YIR029W, structural genomics, JCSG,	95.93
1gqp_A	221	DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome,	95.77
3lei_A	153	Platelet aggregation factor SM-HPAF; lectin domain	95.54
3eyp_A	469	Putative alpha-L-fucosidase; structural genomics,	95.11
3ues_A	478	Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr	94.91
1o59_A	355	Allantoicase; YIR029W, structural genomics, JCSG,	94.6
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	94.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.02
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	93.9
2j1v_A	151	Fucolectin-related protein; carbohydrate-binding p	93.88
2j22_A	148	Fucolectin-related protein; carbohydrate-binding p	93.82
1k12_A	158	Lectin; beta barrel, protein carbohydrate complex,	93.06
4gwi_A	153	Lectinolysin, platelet aggregation factor SM-HPAF;	92.84
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	91.63
4a4a_A	914	Alpha-N-acetylglucosaminidase family protein; hydr	90.9
4a42_A	149	GH89_CBM32-4, alpha-N-acetylglucosaminidase family	90.31
3bn6_A	158	Lactadherin; anticoagulation, anti-coagulation, an	86.09
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	85.57

>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*

Probab=100.00  E-value=3.8e-45  Score=265.90  Aligned_cols=81  Identities=46%  Similarity=0.726  Sum_probs=77.7

Q ss_pred             CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCC---
Q psy12987          1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSN---   77 (82)
Q Consensus         1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~---   77 (82)
                      ||+|+|+||||||||||+|||+|||++|+||+|+|+++||++++|||||++|++|++|||||+||||||||||||+|   
T Consensus         1 Mp~vk~k~Vvs~SSED~~~~AeNLL~~d~~rkW~~~~~gek~~~VeLQle~~~~I~~IDIGN~gSAfIEVlVgrS~~~~~   80 (189)
T 3lqc_A            1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAG   80 (189)
T ss_dssp             -CCGGGEEEEEETTSCHHHHHHHHHTCHHHHHHHHHTTTCSEEEEEEEEEEEECCCEEEEEEEBCSEEEEEEECCTTCCC
T ss_pred             CCcceeeEEEEEcCCCCCCchhhccCCCCCCceeccCCCCceEEEEEEcCCceEeeEEeecCCceEEEEEEeecccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCC
Q psy12987         78 PDDY   81 (82)
Q Consensus        78 ~~~f   81 (82)
                      ++||
T Consensus        81 ~~~f   84 (189)
T 3lqc_A           81 EQDY   84 (189)
T ss_dssp             GGGC
T ss_pred             CCCc
Confidence            3666

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=98.53  E-value=1.1e-07  Score=63.62  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             CCcceece----EEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccC
Q psy12987          1 MAPIKFAR----VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSS   76 (82)
Q Consensus         1 Mp~i~~~~----Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~   76 (82)
                      |+.+-+.+    |+..||.|+.||++|+|+++....|.+  +|.....++++|.++..|.+|.|=-++-.=+++.++..+
T Consensus         5 ~~~~a~~~~g~~v~~~ss~~~~~~~~~~iDg~~~T~W~s--~g~~pq~i~I~~~~~~~is~~~i~~~~~k~~~ie~s~~~   82 (139)
T 2yc2_A            5 MKDYAREENGGLVVMASCSDERFPPENMLDGKDNTFWVT--TGMFPQEFVLRLESCIRVSKITTLSLNVRKLAVEKCDQD   82 (139)
T ss_dssp             CEETTSSTTSCEECCCSCCBTTSCGGGGGSSCTTCCEEC--CSSSCEEEEEEEEEEEEEEEEEEEEESEEEEEEEEECSS
T ss_pred             cceehhccCCcEEEEeccCCCCCChhheECCCCCCEEeC--CCCCCeEEEEECCCceEEEEEEEEecCCcEEEEEEecCC
Confidence            45555666    999999999999999999998889986  454557889999999999999997666666777777665


Q ss_pred             CCCCC
Q psy12987         77 NPDDY   81 (82)
Q Consensus        77 ~~~~f   81 (82)
                      .|.+|
T Consensus        83 ~p~~w   87 (139)
T 2yc2_A           83 KPDQF   87 (139)
T ss_dssp             SCCCC
T ss_pred             CCCce
Confidence            55555

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=98.39  E-value=7.8e-07  Score=61.26  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=59.2

Q ss_pred             eEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCCCCC
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDY   81 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~~~f   81 (82)
                      .|+..||.|+.|+++|+++++....|.+.  |.....++++|.++..|.+|.|=-++--=++|.++..+.|++|
T Consensus        24 ~v~~ass~~~~~~~~~~iDgn~~T~W~t~--g~~Pq~i~Idf~k~~~is~~~i~~~~vk~~~ie~s~d~~p~~w   95 (153)
T 1tvg_A           24 EVILATSSDEKHPPENIIDGNPETFWTTT--GMFPQEFIICFHKHVRIERLVIQSYFVQTLKIEKSTSKEPVDF   95 (153)
T ss_dssp             EEECCSCCCTTSCGGGGGSSCTTCCEECC--SCSSEEEEEEEEEEEEEEEEEEEEESEEEEEEEEECSSSSCCC
T ss_pred             EEEEecccCcccCHHHcCcCCCCceEECC--CCCCcEEEEECCCceEEEEEEEEecCCEEEEEEEECCCCCcce
Confidence            58999999999999999999988899863  4445688899999999999999766766777777766555555

>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*

Probab=97.26  E-value=0.0012  Score=41.60  Aligned_cols=53  Identities=21%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             EEEeecCCCC---CccccccCCCCCCCeeecC---CCceeEEEEEecCCcceeeEEEeC
Q psy12987          9 VVSYSSEDPV---HKADNLLNPESTKKWKCKS---MGEKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus         9 Vvs~SSEd~~---hpaeNLL~~~~~r~W~~~~---~Ge~~~~V~lql~~~~~I~~IDIG   61 (82)
                      -++.||+.+.   |+++||++.+....|..+-   ......++.+.|.++..|.+|.|-
T Consensus        13 ~~tass~~~~~~~~~~~~~~DG~~~t~w~s~~~~~~~~~~~~l~iDLg~~~~i~~v~~~   71 (150)
T 2j1a_A           13 KITASSEETSGENAPASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYA   71 (150)
T ss_dssp             EEEESCCBCSSSCBCGGGGSSSCTTCCEECCCSSSCCCSCCEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEecccCCCCCCcHHhcCcCCCCCcEEccccCCCCCCCeEEEEECCCCeEEeEEEEe
Confidence            3788999876   9999999988766776542   123456788889999999999994

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=97.26  E-value=0.0021  Score=42.93  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=42.7

Q ss_pred             EEeecCCCC----CccccccCCCCCCCeeecCC--CceeEEEEEecCCcceeeEEEeC
Q psy12987         10 VSYSSEDPV----HKADNLLNPESTKKWKCKSM--GEKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus        10 vs~SSEd~~----hpaeNLL~~~~~r~W~~~~~--Ge~~~~V~lql~~~~~I~~IDIG   61 (82)
                      +++||+.+.    ++++||++.+....|.+...  +....++.+.|.++..|.+|.+-
T Consensus        32 vtAsS~~~~~~~~~~~~~a~DG~~~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~   89 (161)
T 4a41_A           32 ATATSEHPDVGNEGLAKFAIDGKENTIWHTKYNPVEELPQSITLELGGSYEINKFTYL   89 (161)
T ss_dssp             EEESCCCCCSSSCCCGGGGGSSCTTCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEeccCCCCCCCCcHHHcCcCCCCCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEE
Confidence            788999887    99999999887778987631  23457888889999999999984

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=97.12  E-value=0.0035  Score=41.17  Aligned_cols=53  Identities=21%  Similarity=0.464  Sum_probs=41.8

Q ss_pred             eEEEeecCCCC------CccccccCCCCCCCeeecCCC---ceeEEEEEecCCcceeeEEEe
Q psy12987          8 RVVSYSSEDPV------HKADNLLNPESTKKWKCKSMG---EKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~------hpaeNLL~~~~~r~W~~~~~G---e~~~~V~lql~~~~~I~~IDI   60 (82)
                      .|+.+|||.+.      ++++||++.+....|.+...+   ....++.+.|.++..|.+|.+
T Consensus        11 ~v~~~s~~~~~~~~~~~g~~~~a~DG~~~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~   72 (159)
T 3f2z_A           11 KIVSFTTEEASGEGSNNGHAKHLIDGNIETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIEL   72 (159)
T ss_dssp             EEEEESCCCSSTTCTTSBSGGGGSSSCTTCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEecccccCCCCCCCCcHHhcCCCCCCCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEE
Confidence            47778998765      589999998877789876321   244688888999999999998

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=97.03  E-value=0.0012  Score=41.99  Aligned_cols=50  Identities=22%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             EEEeecCC--CCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC
Q psy12987          9 VVSYSSED--PVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN   62 (82)
Q Consensus         9 Vvs~SSEd--~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN   62 (82)
                      -++.||.+  +.|.++|+++.+....|.+...    .++.+.|.++..|.+|.|-.
T Consensus        12 ~vtASs~~~~~~~~~~~a~Dg~~~t~W~~~~~----~~l~vDLg~~~~v~~v~i~~   63 (145)
T 2jda_A           12 AVTASGYDSEKGHVPANIADGDVKTRWAASGE----SWVQLELDKEQSIENILIVP   63 (145)
T ss_dssp             EEEESCCBTTTTBCGGGGGSSCTTCCEEEESS----EEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEeecccCCCCCchhcccCCCCCeECCCCC----eeEEEECCCceEEEEEEEEe
Confidence            35677775  7899999999887778997632    77888899999999999864

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.0069  Score=40.39  Aligned_cols=54  Identities=17%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             eEEEeecCCCCC------ccccccCCCCCCCeeecCCC---ceeEEEEEecCCcceeeEEEeC
Q psy12987          8 RVVSYSSEDPVH------KADNLLNPESTKKWKCKSMG---EKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus         8 ~Vvs~SSEd~~h------paeNLL~~~~~r~W~~~~~G---e~~~~V~lql~~~~~I~~IDIG   61 (82)
                      .|+.+|||.+.+      +++||++.+....|.+.-.+   ....++.+.|.++..|.+|.+-
T Consensus        21 ~v~~~s~~~~~~~~~~~g~~~~a~DG~~~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~   83 (169)
T 3ggl_A           21 EVLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELL   83 (169)
T ss_dssp             EEEEESCCCSSSSCSSCBSGGGGGSSCSSCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEecccccCCCccCCCcHHhcCCCCCCCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEE
Confidence            477899998776      79999998877788865211   2346788889999999999883

>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}

Probab=96.36  E-value=0.021  Score=39.37  Aligned_cols=68  Identities=9%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             eEEEeecCCCC---------CccccccCCCCCCCeee--cCCCceeEEEEEecCCcceeeEEEeC----------CCCeE
Q psy12987          8 RVVSYSSEDPV---------HKADNLLNPESTKKWKC--KSMGEKQAVAILQLSSQVQINGIDIG----------NEFSA   66 (82)
Q Consensus         8 ~Vvs~SSEd~~---------hpaeNLL~~~~~r~W~~--~~~Ge~~~~V~lql~~~~~I~~IDIG----------N~gSA   66 (82)
                      .|++||||.+.         ||++||++.+...-|.+  ...+..-..+.+.|.++..|.+|.+-          |..--
T Consensus        19 ~v~~~sSe~~~~~~~~~~~G~~~~~liDgn~~T~Wht~w~~~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik   98 (172)
T 3hnm_A           19 SVIDFNNCCTQDGGWYLNMGWGVESLIDNNPGTQWLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSK   98 (172)
T ss_dssp             CEEEESCCGGGSCHHHHTTSCSGGGGSSSCTTSCEECCCSSCCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEE
T ss_pred             EEEEcCCcccCCCCcccccCccHHHcCCCCCCCeEEecCCCCCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeE
Confidence            37889998653         58999999887778877  32233557788889999999999982          33334


Q ss_pred             EEEEEeecc
Q psy12987         67 FVEVFVAKS   75 (82)
Q Consensus        67 fiEvlVg~s   75 (82)
                      =.||.++..
T Consensus        99 ~~~I~~S~D  107 (172)
T 3hnm_A           99 AGYVEASID  107 (172)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEEeC
Confidence            466666543

>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}

Probab=96.35  E-value=0.0077  Score=37.78  Aligned_cols=54  Identities=19%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             EEeecCCCCCccccccCCCCCCCeeecCCC--ceeEEEEEecCCcceeeEEEeCCC
Q psy12987         10 VSYSSEDPVHKADNLLNPESTKKWKCKSMG--EKQAVAILQLSSQVQINGIDIGNE   63 (82)
Q Consensus        10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~G--e~~~~V~lql~~~~~I~~IDIGN~   63 (82)
                      .+.||+...+|++|+|+.+....|..+-.+  ....++.+.|.++..|++|.+-..
T Consensus        18 asss~~~~~~~~~~~~Dg~~~t~w~~~w~~~~~~~~~l~vDLg~~~~i~~v~~~~~   73 (143)
T 2v72_A           18 ASATSEEGQDPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPR   73 (143)
T ss_dssp             EEESSCBTTBCGGGGSSSCTTCCEECCTTSCSCSCEEEEEEEEEEEEEEEEEEECC
T ss_pred             EEEecccCCChHHhccCCCCCCceecCCCCCCCCCEEEEEECCCCeEEeEEEEEec
Confidence            466777888999999998766567644111  245678888999999999999543

>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*

Probab=96.24  E-value=0.0066  Score=41.32  Aligned_cols=68  Identities=18%  Similarity=0.150  Sum_probs=51.0

Q ss_pred             eeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCe---EEEEEEee
Q psy12987          5 KFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS---AFVEVFVA   73 (82)
Q Consensus         5 ~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gS---AfiEvlVg   73 (82)
                      -+..-+..||+...++++|+.+++....|... .+....++.+.|.++..|.+|.|-.+..   .-.+|.|+
T Consensus        30 A~~k~ataSs~~~~~~a~~AvDGn~~T~W~s~-~~~~~~Wi~VDLg~~~~v~~v~i~~~~~~~~~~y~IevS  100 (161)
T 4a3z_A           30 AENKNVSGSNSQSGNPLSNITDGDLSSLWISD-NGAMPANATIDLEGNNFVDFLELHFEKEGFRFQFKVEVE  100 (161)
T ss_dssp             TTTCCEEESCBCTTCCGGGGSSSCTTCCEEBG-GGCSSEEEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred             cCCCceEEeCCcCCCChhhcCcCCCCCeEEcC-CCCCCeEEEEECCCcEEEeEEEEEECCCCceEEEEEEEE
Confidence            34556788888888999999999988899976 2334567777899999999999865432   23456655

>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9

Probab=96.09  E-value=0.0046  Score=43.62  Aligned_cols=68  Identities=19%  Similarity=0.252  Sum_probs=56.2

Q ss_pred             ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCC-------CeEEEEEEeeccC
Q psy12987          7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNE-------FSAFVEVFVAKSS   76 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~-------gSAfiEvlVg~s~   76 (82)
                      ....++||--+.+.++||++.+...-|++.  |.+.-+|.|||.+...|+.|.|--.       -=.-|+|.+|.+.
T Consensus        27 ~a~w~vSS~k~g~gv~~L~D~~~~TyWqSd--g~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~  101 (171)
T 1jhj_A           27 QAVWSLSSCKPGFGVDQLRDDNLETYWQSD--GSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF  101 (171)
T ss_dssp             GEEEEESCCBTTBSTHHHHSSCTTCCEECC--SSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred             CeEEEEEecCCCCChHHcCCCCCCeeEccC--CCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCCc
Confidence            456789998888999999998888899954  6678899999999999999988533       3366899999874

>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A

Probab=95.93  E-value=0.035  Score=43.40  Aligned_cols=64  Identities=28%  Similarity=0.303  Sum_probs=50.4

Q ss_pred             eEEEeecCCCCCccccccCCCCCC----CeeecCC-Ccee-EEEEEecCC-cceeeEEEe------CCC-CeEEEEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTK----KWKCKSM-GEKQ-AVAILQLSS-QVQINGIDI------GNE-FSAFVEVFV   72 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r----~W~~~~~-Ge~~-~~V~lql~~-~~~I~~IDI------GN~-gSAfiEvlV   72 (82)
                      .|+.||.|.=.+ ++|||+++..+    +|-+++- .... =+++++|-. |-.|..|+|      ||+ .++=||-.-
T Consensus       218 ~vv~~SD~~fg~-~~NLl~Pg~g~~MgDGWETrRrR~pG~~DW~IvrLG~~~G~I~~ieVDTa~FkGN~P~~vsi~a~~  295 (355)
T 1o59_A          218 VALKYSDQHFGS-VDNLLLPGRGHDMSDGWETKRSRQPGHTDWAVIQLGRESSFIEKIIVDTAHFRGNFPQFITVEGCL  295 (355)
T ss_dssp             EEEEESCCSEEC-GGGGGCSSSCSSGGGSEECCCCCSTTCCEEEEEECSSCCSEEEEEEEECTTCSSSCCSEEEEEEEC
T ss_pred             EEEEEecccccC-HHHccCCCccccccccceecccCCCCCccEEEEEccCCCcEEEEEEEECCcccCCCCCeEEEEEEe
Confidence            688999887765 79999987653    7888743 3344 789999997 999999999      898 777777654

>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9

Probab=95.77  E-value=0.013  Score=43.18  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC-------eEEEEEEeeccC
Q psy12987          7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF-------SAFVEVFVAKSS   76 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g-------SAfiEvlVg~s~   76 (82)
                      ..+.+.||--+.+.+++|++.+...=|+.  +|.+..+|-|||.|-..|+.|-|==..       =.-|.|.+|.+.
T Consensus        58 ~A~WsvSS~K~g~gV~~L~D~s~~TyWQS--DG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~~  132 (221)
T 1gqp_A           58 LALWKPSSFKLGNPVDFALDDNYDTFWQS--DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSP  132 (221)
T ss_dssp             GSEEEESCCCTTCCGGGGSSSCTTCCEEC--CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred             ceEEEEecCCCcCCHHHhcCCCccceecc--CCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeCCc
Confidence            34568999999999999999888889994  677889999999999999988764322       367777777663

>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*

Probab=95.54  E-value=0.018  Score=38.00  Aligned_cols=72  Identities=14%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCCe-------EEEEEEe
Q psy12987          4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEFS-------AFVEVFV   72 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~gS-------AfiEvlV   72 (82)
                      +-+.+-++.||....++|+|+++++....|...    ..++..-++.+.|.++..|.+|.|=|...       .=.+|.|
T Consensus        12 lA~~k~ataSS~~~~~~a~~AvDG~~~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~~~~r~~~~~I~v   91 (153)
T 3lei_A           12 IARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVL   91 (153)
T ss_dssp             TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEE
T ss_pred             cCCCCCeeECCCcCCCCccccccCCCCCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCcccccceeEEEEE
Confidence            345667888998888999999999988889741    24555667777899999999999944432       1356777


Q ss_pred             ecc
Q psy12987         73 AKS   75 (82)
Q Consensus        73 g~s   75 (82)
                      |.+
T Consensus        92 s~~   94 (153)
T 3lei_A           92 LNE   94 (153)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            743

>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}

Probab=95.11  E-value=0.029  Score=44.29  Aligned_cols=53  Identities=19%  Similarity=0.246  Sum_probs=44.0

Q ss_pred             ceEEEeecCCC-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987          7 ARVVSYSSEDP-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         7 ~~Vvs~SSEd~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      ..-|.+||+.. .|.++|+++++...-|.+. .+....+++|.|.+++.|..|-|
T Consensus       330 ~~~vtASS~~~~~~~~~~a~Dgd~~TyW~a~-~~~~~~wl~vDLg~~~~vn~V~l  383 (469)
T 3eyp_A          330 GAKVKATNVRGAKYSPEKMLDNEKNTYFAGK-DGEVKADIIFTLPKTIEFDCLMI  383 (469)
T ss_dssp             TCEEEESSCCCGGGCGGGGGSCCSSCCEECC-TTCCCEEEEEEEEEEEEEEEEEE
T ss_pred             CCceEEeeccCCCCChhhcccCCCCceEeCC-CCCCCcEEEEECCCCcEEeEEEE
Confidence            34567888766 8999999999988889877 55666788899999999999987

>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*

Probab=94.91  E-value=0.021  Score=45.34  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             EEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC-------CCeEEEEEEee
Q psy12987          9 VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN-------EFSAFVEVFVA   73 (82)
Q Consensus         9 Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN-------~gSAfiEvlVg   73 (82)
                      -|.+||+.  |.++|+++.+...-|.+. .|....+++|.|.+|+.|..|-|--       -.+--||+..+
T Consensus       360 ~vtaSs~~--~~~~~a~Dgn~~TyW~a~-~~~~~~~l~idLg~~~~~n~v~IqE~i~~gqRV~~y~Ve~~~d  428 (478)
T 3ues_A          360 EARTSSAS--AAAAHLVDGNRDTFWRPD-ADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALP  428 (478)
T ss_dssp             EEEESSCG--GGGGGGSSSCTTCCBCCC-TTCSSCEEEEEEEEEEEEEEEEEEECGGGCCCEEEEEEEEECT
T ss_pred             ceEeeccc--cChhhcccCCCCceEeCC-CCCCCeeEEEECCCCcEEEEEEEeecccCCCceEEEEEEEEeC
Confidence            46678876  999999998877788877 6667788999999999999988641       13445666553

>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A

Probab=94.60  E-value=0.097  Score=40.90  Aligned_cols=64  Identities=27%  Similarity=0.407  Sum_probs=46.5

Q ss_pred             ceEEEeecCCCCCccccccCCCC--------------CCCeeecCC-CceeEEEEEecCC-cceeeEEEe------CCC-
Q psy12987          7 ARVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSM-GEKQAVAILQLSS-QVQINGIDI------GNE-   63 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~-Ge~~~~V~lql~~-~~~I~~IDI------GN~-   63 (82)
                      ..|++||.|-=. +|+|||++..              +-+|-+.+- .+.-=+++++|-- |-.|.+|||      ||+ 
T Consensus        44 g~vl~~sDe~Fa-~a~NLL~p~~p~~~~~~f~~~GkwmDGWETRR~R~~ghDW~IirLG~~pG~I~gveVDTa~F~GN~p  122 (355)
T 1o59_A           44 GQVVSFSDEWFA-SAENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEMEYDWVIIKMGVAAAHIIGGEIDTAFFNGNHA  122 (355)
T ss_dssp             CEEEEESCCSSB-CGGGGGCSSCCCCC---------CCSSEECCSSCSSSCEEEEEECSSSCEEEEEEEEECTTCSSSBC
T ss_pred             CEEEEEcccccc-cHHhcCCCCCccccCCccccCCCcccccccccCCCCCCCEEEEEcCCCCcEEEEEEEecCcccCCCC
Confidence            368889888666 9999999642              246887742 3345799999999 999999998      663 


Q ss_pred             CeEEEEEE
Q psy12987         64 FSAFVEVF   71 (82)
Q Consensus        64 gSAfiEvl   71 (82)
                      -.+=||..
T Consensus       123 p~vsvea~  130 (355)
T 1o59_A          123 PFVSIEAL  130 (355)
T ss_dssp             SEEEEEEE
T ss_pred             CeEEEEEE
Confidence            34444443

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=94.53  E-value=0.21  Score=38.48  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             EEEeecCCC---CCccccccCCCCCCCeeecCCC----ceeEEEEEecCCcceeeEEEeC
Q psy12987          9 VVSYSSEDP---VHKADNLLNPESTKKWKCKSMG----EKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus         9 Vvs~SSEd~---~hpaeNLL~~~~~r~W~~~~~G----e~~~~V~lql~~~~~I~~IDIG   61 (82)
                      +..+||+..   .++++||++.+....|.....+    ....++.+.|.++..|.+|.+-
T Consensus       465 ~~~~ss~~~~~~~~~~~~a~DG~~~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~  524 (601)
T 1w8o_A          465 IADVDSEETAREDGRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYT  524 (601)
T ss_dssp             EEEESCCCCSSSCCCGGGGGSSCTTCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred             eeecccccccccCCccceeeCCCCCCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEe
Confidence            556788765   7999999998877789765322    1356788889999999999984

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.02  E-value=0.09  Score=40.95  Aligned_cols=54  Identities=9%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             EEEeecCCCCCccccccCCCCCCCeeecCCC----ceeEEEEEecCCcceeeEEEeCC
Q psy12987          9 VVSYSSEDPVHKADNLLNPESTKKWKCKSMG----EKQAVAILQLSSQVQINGIDIGN   62 (82)
Q Consensus         9 Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~G----e~~~~V~lql~~~~~I~~IDIGN   62 (82)
                      -++.||+...++++|+++.+....|.....+    ....++.+.|.++..|++|.+-.
T Consensus        32 ~~~ass~~~~~~~~~~~Dg~~~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~   89 (656)
T 1k3i_A           32 AVTCDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLP   89 (656)
T ss_dssp             EEEESCCCTTSCGGGGSSSCTTCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEEC
T ss_pred             EEEEeccCCCCcHHhcCCCCCCCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEe
Confidence            4667888889999999998877789876331    23467778899999999999953

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=93.90  E-value=0.12  Score=37.05  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCCe-----EEEEEEeec
Q psy12987          4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEFS-----AFVEVFVAK   74 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~gS-----AfiEvlVg~   74 (82)
                      +-+.+-+..||....++|+|+++++....|...    ..++..-++.+.|.++..|.+|.|=|..+     .=.+|.||.
T Consensus       154 lA~~k~~taSS~~~~~~a~~AvDG~~~t~W~~~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~~d~~~~~~~~~~i~vs~  233 (293)
T 3cqo_A          154 LALKGKATQSSLFESGIAYNAIDGNQANNWEMASCTHTKNTMDPWWRMDLSQTHRVFSVKVTNRDSFEKRINGAEIRIGD  233 (293)
T ss_dssp             GGGGSEEEESCCCTTCCGGGGGSSCCCCSGGGTCCCCCCSEESCEEEEEEEEEEEEEEEEEECCSSSGGGGTTEEEEEES
T ss_pred             ccCCcceecCCCCCCCCccccccCCCCCccccCccccCCCCCCCEEEEECCCeEEEeEEEEEccCccccccCCeEEEEec
Confidence            344556678888777999999999888789742    24445667888899999999999988721     125777775


Q ss_pred             c
Q psy12987         75 S   75 (82)
Q Consensus        75 s   75 (82)
                      |
T Consensus       234 s  234 (293)
T 3cqo_A          234 S  234 (293)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*

Probab=93.88  E-value=0.099  Score=34.76  Aligned_cols=72  Identities=11%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             eeceEEEeecCCCCCccccccCCCCCCCeee---c-CCCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEEeec
Q psy12987          5 KFARVVSYSSEDPVHKADNLLNPESTKKWKC---K-SMGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVFVAK   74 (82)
Q Consensus         5 ~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~---~-~~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvlVg~   74 (82)
                      -+.+-+..||....++|.|+.+++....|..   . ..++..-++.+.|.++..|.+|-|=|.+.      .=.||.||.
T Consensus        19 Algk~at~SS~~~~~~a~~AvDGn~~t~w~~~sct~t~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~v~~   98 (151)
T 2j1v_A           19 AYAKPTTQSSVDYNGDPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYD   98 (151)
T ss_dssp             TTTCCEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSCSEEEEEEC
T ss_pred             cCCCCeeECCCCCCCCcCccEeCCCcCcccccccccCCCCCCCEEEEECCCCeEcCEEEEEcCCCccccccCCEEEEEEC
Confidence            3455678899888899999999998888973   2 24556667778899999999999966532      225777876


Q ss_pred             cC
Q psy12987         75 SS   76 (82)
Q Consensus        75 s~   76 (82)
                      +.
T Consensus        99 ~~  100 (151)
T 2j1v_A           99 NN  100 (151)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}

Probab=93.82  E-value=0.15  Score=33.94  Aligned_cols=73  Identities=11%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             ceeceEEEeecCCCCCccccccCCCCCCCeee---c-CCCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEEee
Q psy12987          4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKC---K-SMGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVFVA   73 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~---~-~~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvlVg   73 (82)
                      +-+.+-...||....++|.|+.+++....|..   . ..++..-++.+.|.++..|.+|-|=|...      .=.||.||
T Consensus        15 lAlgk~a~~SS~~~~~~a~~AvDG~~~t~w~~~sct~T~~~~~~Ww~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~vg   94 (148)
T 2j22_A           15 IALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIY   94 (148)
T ss_dssp             TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSEEEEEEEE
T ss_pred             ccCCCceeECCCCCCCccCccEeCCCCCcccccceeccCCCCCCEEEEECCCCEEeeEEEEEecCCCcccccCCEEEEEE
Confidence            34556678899888899999999988878864   2 13455667777799999999999976532      34688888


Q ss_pred             ccC
Q psy12987         74 KSS   76 (82)
Q Consensus        74 ~s~   76 (82)
                      .|.
T Consensus        95 ~s~   97 (148)
T 2j22_A           95 DSN   97 (148)
T ss_dssp             CTT
T ss_pred             eCC
Confidence            764

>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15

Probab=93.06  E-value=0.18  Score=33.46  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             ceeceEEEeecCCCC----C-ccccccCCCCCCCeeec---C-CCceeEEEEEecCCcceeeEEEeCCCCe------EEE
Q psy12987          4 IKFARVVSYSSEDPV----H-KADNLLNPESTKKWKCK---S-MGEKQAVAILQLSSQVQINGIDIGNEFS------AFV   68 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~----h-paeNLL~~~~~r~W~~~---~-~Ge~~~~V~lql~~~~~I~~IDIGN~gS------Afi   68 (82)
                      +-+.+-+.-||....    | +|+|+.+++....|...   . .++..-++.+.|.++..|.+|-|=|.+.      .=.
T Consensus        11 lA~gk~a~aSS~~~~~~~~~~~a~~AvDGn~~t~w~s~sc~~T~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~   90 (158)
T 1k12_A           11 VAVRGKATQSAQLRGEHAANSEASNAIDGNRDSNFYHGSCTHSSGQANPWWRVDLLQVYTITSVTITNRGDCCGERISGA   90 (158)
T ss_dssp             GGGGSEEEESCBCCSTTGGGCCGGGGGSSCCCCCGGGSCSCCBCSCSSCEEEEEEEEEEEEEEEEEEECSSSCTTTTTTC
T ss_pred             ccCCCeeEECcccCCCCcccCCccccCcCCCCCccccccEecCCCCCCCEEEEECCCceEEeEEEEEeCCCcCccccCCE
Confidence            344556677887665    4 89999999988889632   1 2455667778899999999999966432      123


Q ss_pred             EEEeeccC
Q psy12987         69 EVFVAKSS   76 (82)
Q Consensus        69 EvlVg~s~   76 (82)
                      ||.||.+.
T Consensus        91 ~i~v~~s~   98 (158)
T 1k12_A           91 EINIGQHL   98 (158)
T ss_dssp             EEEEESSC
T ss_pred             EEEEEcCC
Confidence            88888763

>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*

Probab=92.84  E-value=0.16  Score=34.01  Aligned_cols=72  Identities=14%  Similarity=0.067  Sum_probs=53.1

Q ss_pred             ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCC-------eEEEEEEe
Q psy12987          4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEF-------SAFVEVFV   72 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~g-------SAfiEvlV   72 (82)
                      +-+.+-+..||....++|+|+.+++....|...    ..++..-++.+.|.++..|.+|.|=|-+       -.=.||.+
T Consensus        12 lA~~k~ataSS~~~~~~a~~AvDG~~~t~w~~~sct~t~~~~~~W~~VDLg~~~~v~~V~i~nr~d~~~~~r~~~~~I~v   91 (153)
T 4gwi_A           12 IARGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVL   91 (153)
T ss_dssp             TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEE
T ss_pred             cCCCCceEEcCCCCCCCcceeEcCCCCCcccccccccCCCCCCCEEEEECCCCEEEEEEEEEcccCCchhhcccceEEEE
Confidence            345566788998888999999999988889731    2455566788889999999999996432       12256777


Q ss_pred             ecc
Q psy12987         73 AKS   75 (82)
Q Consensus        73 g~s   75 (82)
                      |.+
T Consensus        92 ~s~   94 (153)
T 4gwi_A           92 LNE   94 (153)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            743

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=91.63  E-value=0.25  Score=35.40  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             ceeceEEEeecCCCC-Cc-cccccCCCCCCCeeecC----CCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEE
Q psy12987          4 IKFARVVSYSSEDPV-HK-ADNLLNPESTKKWKCKS----MGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVF   71 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~-hp-aeNLL~~~~~r~W~~~~----~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvl   71 (82)
                      +-+.+-+.-||.... |+ |+|+.+++....|....    .++..-++.+.|.++..|.+|.|=|.+.      .=.+|.
T Consensus         6 lA~~k~a~aSS~~~~~~~~a~~AvDG~~~t~W~s~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~r~d~~~~~~~~~~i~   85 (293)
T 3cqo_A            6 VALRGKATQSARYLHTHGAAYNAIDGNRNSDFEAGSCTHTVEQTNPWWRVDLLEPYIVTSITITNRGDCCPERLNGVEIH   85 (293)
T ss_dssp             GGGGSEEEESSBCSSTTCCGGGGGSSCCCCCGGGSCSCCBCSBSSCEEEEEEEEEEEEEEEEEECCSSSCGGGGTTEEEE
T ss_pred             cCCCCceeECcCCCCCCCCcCccccCCCCCccCCCceecCCCCCCCEEEEECCCceEEEEEEEEeCCCCccccccCeEEE
Confidence            334555677777655 88 99999999888897542    2455567788899999999999987542      124777


Q ss_pred             eecc
Q psy12987         72 VAKS   75 (82)
Q Consensus        72 Vg~s   75 (82)
                      |+.|
T Consensus        86 v~~s   89 (293)
T 3cqo_A           86 IGNS   89 (293)
T ss_dssp             EESC
T ss_pred             EecC
Confidence            7766

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A

Probab=90.90  E-value=0.66  Score=39.85  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=44.0

Q ss_pred             ceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987          4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      +-+..-+..||+...|+++|+.+++....|.+. .  ...++.+.|.++..|++|.|
T Consensus        27 LA~gk~vTASS~~~g~~p~nAvDGn~~T~WsS~-~--~~qWLqVDLG~~~~V~~V~l   80 (914)
T 4a4a_A           27 ITEGVTVTAKGNTEGNTADLAIDGDLSTYWESS-N--DYKWIEVDLGGIYELSKIEI   80 (914)
T ss_dssp             CCSSCEEEESCCCTTCCGGGGSSSCTTCCEECC-S--SCCEEEEEEEEEEEEEEEEE
T ss_pred             ccCCCceEEeccCCCCcHHHeECCCCCCeEecC-C--CCceEEEECCCeEEEEEEEE
Confidence            344567889999888999999999988899877 2  22466667999999999999

>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}

Probab=90.31  E-value=0.4  Score=31.47  Aligned_cols=45  Identities=27%  Similarity=0.349  Sum_probs=34.2

Q ss_pred             cCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987         14 SEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus        14 SEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      +.....+|+|+++.+....|.+......  +..+.|.++..|.+|.|
T Consensus        36 ~~~~~g~a~~aiDGn~~T~W~s~~~~~p--~~~VDLg~~~~V~~v~i   80 (149)
T 4a42_A           36 VTSNNSEANNLRDGNENTLWVPGQEEEK--SVTFDLSKEKDISAIDI   80 (149)
T ss_dssp             ESSCGGGGGGGGSSCTTSCBCCCSCSSE--EEEEEEEEEEECCEEEE
T ss_pred             EEcCCCChHhcEeCCCCCEEEcCCCCCC--eEEEECCCcEEEEEEEE
Confidence            3345679999999988778987633223  33777999999999999

>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A

Probab=86.09  E-value=0.96  Score=29.74  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             EEeecCCC-------CCcccccc-CCC-CCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987         10 VSYSSEDP-------VHKADNLL-NPE-STKKWKCKSMGEKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus        10 vs~SSEd~-------~hpaeNLL-~~~-~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG   61 (82)
                      ++.||+..       .|++.|+- ..+ ....|..+ .....-++.+.|.++..|++|-+=
T Consensus        17 itASS~~~~~~~~~~~~~p~~arL~~~~~~~~W~~~-~~~~~qwlqVDLg~~~~vt~v~tq   76 (158)
T 3bn6_A           17 ITASSYYKTWGLSAFSWFPYYARLDNQGKFNAWTAQ-TNSASEWLQIDLGSQKRVTGIITQ   76 (158)
T ss_dssp             EEESCCCBGGGCGGGBCCGGGCBTTCCSSSCSEECS-SCCTTCCEEEEEEEEEEEEEEEEE
T ss_pred             EEEecccccccccccccChhheEEcCCCCCCcccCC-CCCCCCEEEEeCCCceEEEEEEee
Confidence            56777744       78888874 543 45689866 332334666668899999999873

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=85.57  E-value=0.79  Score=37.74  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=40.1

Q ss_pred             EEeecCC---CCCccccccCCCCCCCeeecC---CCceeEEEEEecCCcceeeEEEeCC
Q psy12987         10 VSYSSED---PVHKADNLLNPESTKKWKCKS---MGEKQAVAILQLSSQVQINGIDIGN   62 (82)
Q Consensus        10 vs~SSEd---~~hpaeNLL~~~~~r~W~~~~---~Ge~~~~V~lql~~~~~I~~IDIGN   62 (82)
                      ++.||+.   ..+|++|+++++....|.+.-   .+....++.+.|.++..|++|.+=+
T Consensus       601 ~tAsS~~~~~~~~~a~~aiDGn~~T~W~S~w~~~~~~~p~wl~VDLg~~~~V~~V~i~~  659 (737)
T 2v5d_A          601 ITASSEETSGENAPASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYAP  659 (737)
T ss_dssp             CEESCCBCSSSSBCGGGGGSSCSSCCEECCCSSSCCCCCCEEEEEEEEEEEEEEEEEEC
T ss_pred             EEeeccccCCCCCCHHHccCCCCCCceeccccCCCCCCCeEEEEECCCcEEEEEEEEEe
Confidence            5677875   479999999988777787542   2334457777899999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1xnta_	151	b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (H	2e-34

>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: N-terminal domain of xrcc1
domain: N-terminal domain of xrcc1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 2e-34
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSS---NPDDYK 82
          GN+ SAFVEV V  S+      DY+
Sbjct: 61 GNDGSAFVEVLVGSSAGGAGEQDYE 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1xnta_	151	N-terminal domain of xrcc1 {Human (Homo sapiens) [	100.0
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	98.57
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	97.89
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	97.82
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	97.63
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	97.09
d1o59a2	150	Allantoicase {Baker's yeast (Saccharomyces cerevis	94.89
d2qqia2	155	B1 domain of neuropilin-1 {Human (Homo sapiens) [T	92.86
d2qqia1	156	C2 domain of factor VIII {Human (Homo sapiens) [Ta	92.54
d1o59a1	188	Allantoicase {Baker's yeast (Saccharomyces cerevis	92.2
d1sddb3	162	C2 domain of factor V {Cow (Bos taurus) [TaxId: 99	89.16

>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: N-terminal domain of xrcc1
domain: N-terminal domain of xrcc1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-47  Score=266.23  Aligned_cols=82  Identities=45%  Similarity=0.718  Sum_probs=78.9

Q ss_pred             CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCC--
Q psy12987          1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNP--   78 (82)
Q Consensus         1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~--   78 (82)
                      ||+|+|||||||||||++|||+|||+++++|+|+|+++||++++|||||++|++|++|||||+||||||||||||+|+  
T Consensus         1 M~~i~~k~Vvs~SSeD~~~~a~NLL~~~~~rkW~~~~~gek~a~ViLQle~as~I~~IDIGN~gSAfiEVlVgrSs~~~~   80 (151)
T d1xnta_           1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAG   80 (151)
T ss_dssp             CCSCCBCCCSEEESCCSTTCGGGGGGSSTTCCCCCSSSSCSEEEEEEEEEEEECCSEEEEEEEBCCEEEEEEECSSSSSC
T ss_pred             CCceeeeEEEEEcccCCCCchhhccCCCCCCcceecCCCCeeEEEEEEeCCceecceEeecCCCeEEEEEEEeccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999873  


Q ss_pred             -CCCC
Q psy12987         79 -DDYK   82 (82)
Q Consensus        79 -~~f~   82 (82)
                       +||+
T Consensus        81 ~~~f~   85 (151)
T d1xnta_          81 EQDYE   85 (151)
T ss_dssp             SSCCE
T ss_pred             Cccce
Confidence             5673

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.3e-08  Score=61.32  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             eEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCCCCC
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDY   81 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~~~f   81 (82)
                      .|+.+||+|+.||++|+++.+....|.+.  |....+++|.|.++..|.+|-|.|++..-.++.+.-|..+.+|
T Consensus        11 ~v~~~ss~~~~~~~~~~iDgd~~T~W~s~--~~~p~~i~idl~~~~~i~~i~i~~~~~~~~~~~i~~s~Dg~~w   82 (136)
T d1tvga_          11 EVILATSSDEKHPPENIIDGNPETFWTTT--GMFPQEFIICFHKHVRIERLVIQSYFVQTLKIEKSTSKEPVDF   82 (136)
T ss_dssp             EEECCSCCCTTSCGGGGGSSCTTCCEECC--SCSSEEEEEEEEEEEEEEEEEEEEESEEEEEEEEECSSSSCCC
T ss_pred             EEEEEecCCCCCCHHheEcCCCCceeecC--CCCcEEEEEECCCeEEEeeEEEEecccceeEEEEEEccCCcee
Confidence            58899999999999999999988899865  3334688899999999999999999887788888776554444

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=2.2e-05  Score=54.11  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe-------CCCCeEEEEEEeeccC
Q psy12987          7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI-------GNEFSAFVEVFVAKSS   76 (82)
Q Consensus         7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI-------GN~gSAfiEvlVg~s~   76 (82)
                      ....+.||..+.++++||++++...-|..  +|.+..++.|+|.++..|.+|.|       .++.-.-++|.+|..+
T Consensus        58 ~a~~~~SS~~~g~~~~~~~Dgn~~T~W~S--~~~~ph~i~idl~~~~~i~~i~i~~~~~~d~sy~p~~~~i~~s~d~  132 (194)
T d1gqpa_          58 LALWKPSSFKLGNPVDFALDDNYDTFWQS--DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSP  132 (194)
T ss_dssp             GSEEEESCCCTTCCGGGGSSSCTTCCEEC--CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred             CceEEEEecCCCCCHHHhcCCCCcceecc--CCCCCEEEEEECCCCcEEEEEEEEecccccccCCceEEEEEEeCCc
Confidence            34678999999999999999998889985  46667889999999999999988       4566678899998764

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.8e-05  Score=52.26  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=55.9

Q ss_pred             eEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe-------CCCCeEEEEEEeeccC
Q psy12987          8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI-------GNEFSAFVEVFVAKSS   76 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI-------GN~gSAfiEvlVg~s~   76 (82)
                      .+-+.||+.+.|+++||++.+....|.+  .|....+|.|+|.++..|.+|.|       .|+.-.=++|.+|..+
T Consensus        28 ~~wtvSS~~~g~~~~~l~Dgd~~T~W~S--~~~~ph~I~idl~~~~~i~~i~i~~~~~~d~s~~p~~~~i~~s~d~  101 (161)
T d1jhja_          28 AVWSLSSCKPGFGVDQLRDDNLETYWQS--DGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF  101 (161)
T ss_dssp             EEEEESCCBTTBSTHHHHSSCTTCCEEC--CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred             ceEEEecCCCCCCHHHccCCCCCceeec--CCCCCEEEEEEcCCCeEEEEEEEEecCCCCcCCCcEEEEEEEcCCc
Confidence            4558899999999999999998889975  45666899999999999999998       5666677788877653

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=97.09  E-value=0.0012  Score=40.29  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             eeceEEEeecCCCCCccccccCCCCCCCeee----cCCCceeEEEEEecCCcceeeEEEe
Q psy12987          5 KFARVVSYSSEDPVHKADNLLNPESTKKWKC----KSMGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus         5 ~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~----~~~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      .+..|-+-.+..+.++|+||++.+....|..    ...+....+++|.|.+|..|.+|.|
T Consensus         5 ~i~~~~s~~~~~~~g~a~~~~Dg~~~T~W~s~~~~~~~~~~~~wi~idl~~~~~v~~i~i   64 (142)
T d1w8oa2           5 SIADVDSEETAREDGRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQY   64 (142)
T ss_dssp             EEEEESCCCCSSSCCCGGGGGSSCTTCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEE
T ss_pred             eeeeeccccccCCCCCHHheEcCCCCCcccccCcCCCCCCccEEEEEECCCeEEeeEEEE
Confidence            3444444444456789999999886666753    3334455689999999999999999

>d1o59a2 b.18.1.22 (A:194-343) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Allantoicase repeat
domain: Allantoicase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.033  Score=36.93  Aligned_cols=52  Identities=27%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             eEEEeecCCCCCccccccCCCCC----CCeeecCCC-ce-eEEEEEecCCc-ceeeEEEe
Q psy12987          8 RVVSYSSEDPVHKADNLLNPEST----KKWKCKSMG-EK-QAVAILQLSSQ-VQINGIDI   60 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~~----r~W~~~~~G-e~-~~~V~lql~~~-~~I~~IDI   60 (82)
                      .||.||.|.=. +++|||+++..    -+|-+++-. .. .=+++++|-.| ..|+.|+|
T Consensus        13 ~vv~~sD~~f~-~~~nll~pg~~~~m~DGWETrRrR~~g~~DW~IikLg~~~g~I~~i~i   71 (150)
T d1o59a2          13 VALKYSDQHFG-SVDNLLLPGRGHDMSDGWETKRSRQPGHTDWAVIQLGRESSFIEKIIV   71 (150)
T ss_dssp             EEEEESCCSEE-CGGGGGCSSSCSSGGGSEECCCCCSTTCCEEEEEECSSCCSEEEEEEE
T ss_pred             EEEEECccccC-CHHHeeccCCCCcCCCcCccccCCCCCCCCEEEEEccCCCceEEEEEE
Confidence            68889887654 67999998765    378777422 22 37999999765 78999998

>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: B1 domain of neuropilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.087  Score=33.02  Aligned_cols=51  Identities=10%  Similarity=0.067  Sum_probs=35.8

Q ss_pred             EEeecC-CCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987         10 VSYSSE-DPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG   61 (82)
Q Consensus        10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG   61 (82)
                      ++.||+ ++.|++.|.-.......|..+. ....-++.+.|.++..|++|.+-
T Consensus        19 itASS~~~~~~~~~~aRLn~~~~~W~~~~-~~~~~wlqvDlg~~~~itgi~~q   70 (155)
T d2qqia2          19 ITASSQYSTNWSAERSRLNYPENGWTPGE-DSYREWIQVDLGLLRFVTAVGTQ   70 (155)
T ss_dssp             EEESCCSCGGGCGGGGBTTCSSCCBCCSS-CCTTCCEEEEEEEEEEEEEEEEE
T ss_pred             EEEeccCCCCCChhheeecCCCccEecCC-CCcceEEEecCCceeEeeeeeec
Confidence            456776 8899999985544344686553 22333777779999999999883

>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.076  Score=33.43  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             EEeecC-CCCCccccccCCCCCCCee--ecCCCceeEEEEEecCCcceeeEEEe
Q psy12987         10 VSYSSE-DPVHKADNLLNPESTKKWK--CKSMGEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus        10 vs~SSE-d~~hpaeNLL~~~~~r~W~--~~~~Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      ++.||+ +..|.+.++...+....|.  ++......-++.+.|.++..|++|.+
T Consensus        17 itASS~~~~~~~p~~aRL~~~~~~w~~~~a~~~~~~~wlqvDlg~~~~I~gv~~   70 (156)
T d2qqia1          17 ITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIII   70 (156)
T ss_dssp             EEETTTTSTTCCGGGGBTTCCCCSCSBCCCTTCCSCCCEEEEEEEEEEEEEEEE
T ss_pred             EEEcccCCCCCCHhHeeeccCCCcccccccccCCCcceEEecCCcEEEEEEEEE
Confidence            456776 7888889875544445554  33334445588888999999999998

>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Allantoicase repeat
domain: Allantoicase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.25  Score=33.63  Aligned_cols=63  Identities=27%  Similarity=0.410  Sum_probs=45.0

Q ss_pred             eEEEeecCCCCCccccccCCCC--------------CCCeeecC-CCceeEEEEEecCCc-ceeeEEEe------CCCC-
Q psy12987          8 RVVSYSSEDPVHKADNLLNPES--------------TKKWKCKS-MGEKQAVAILQLSSQ-VQINGIDI------GNEF-   64 (82)
Q Consensus         8 ~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~-~Ge~~~~V~lql~~~-~~I~~IDI------GN~g-   64 (82)
                      .|++||.|.= -+++|||+++.              +-+|-+++ -+..-=+++++|-.| ..|+.|+|      ||+= 
T Consensus        34 ~vi~~sD~~F-~~~~nll~p~~pv~~~~~~~~~g~m~DGWETrRrR~~g~DW~IikLg~~~g~I~~i~IDT~~FkGN~P~  112 (188)
T d1o59a1          34 QVVSFSDEWF-ASAENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEMEYDWVIIKMGVAAAHIIGGEIDTAFFNGNHAP  112 (188)
T ss_dssp             EEEEESCCSS-BCGGGGGCSSCCCCC---------CCSSEECCSSCSSSCEEEEEECSSSCEEEEEEEEECTTCSSSBCS
T ss_pred             EEEEEccchh-cCHHHhcCCCCcccccccccccCccccccccccccCCCCceEEEEecCCCceEEEEEEecccccCCccc
Confidence            6788887654 36799998653              13898884 344667999999876 58999999      6653 


Q ss_pred             eEEEEEE
Q psy12987         65 SAFVEVF   71 (82)
Q Consensus        65 SAfiEvl   71 (82)
                      +|=||-.
T Consensus       113 ~~Sie~~  119 (188)
T d1o59a1         113 FVSIEAL  119 (188)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4446643

>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.16  E-value=0.53  Score=29.50  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=36.1

Q ss_pred             EEeecCCCCCccccc-cCC-CCCCCeeecC-C--CceeEEEEEecCCcceeeEEEe
Q psy12987         10 VSYSSEDPVHKADNL-LNP-ESTKKWKCKS-M--GEKQAVAILQLSSQVQINGIDI   60 (82)
Q Consensus        10 vs~SSEd~~hpaeNL-L~~-~~~r~W~~~~-~--Ge~~~~V~lql~~~~~I~~IDI   60 (82)
                      ++.||....|++.+. |.. +....|.++. .  ....-++.+.|.++..|++|-+
T Consensus        20 itASS~~~~~~p~~aRL~~~~~~~aW~~~~~~~~~d~~qwlqVDlg~~~~Vtgv~t   75 (162)
T d1sddb3          20 IQASEFWGYWEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQT   75 (162)
T ss_dssp             EEESCCSTTCCGGGCBTTCCSSSCSEECSCCCCSSCCCSCEEEEEEEEEEEEEEEE
T ss_pred             EEEeeecCCCChhhheecCCCCCCceecccccccCCccceEEecCCcEEEEEEEEe
Confidence            567888777888887 543 3456897652 1  2233477777999999999998