Psyllid ID: psy12999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWAS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLIKKQEFLEKKIGEEINiartngtkNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAisnpvafghdvdeDELEKELEALEQEELDKDLLklstpggelpeipstapkdkpkekastkeRSVEDEIRELEAWAS
Flexible Loop (DISEMBL)
mlikkqeflekkigeeiniartngtknkrAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKlstpggelpeipstapkdkpkekastkersvedeiRELEAWAS
Low Complexity Region (SEG)
MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVdedelekelealeqeeldkdllklSTPGGELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWAS
Disordered region (IsUnstruct)
**********************************************************************VL***********************************************************************************************************************
Disordered Region (DISOPRED)
MLIKKQEFLEKKIG******************QALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADA****H**MDVNQVHDMMDDIAEQQDVAKEISEA*****A*GHDVDEDELEKELEA************************************************ELEAW**
Disordered Region (DISEMBL)
MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPST*****************************
Disordered Region (DISPRO)
MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELP**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRxxxxxxxxxxxxxxxxxxxxxREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q9D8B3	224	Charged multivesicular bo	yes	N/A	0.979	0.834	0.625	8e-50
Q9H444	224	Charged multivesicular bo	yes	N/A	0.979	0.834	0.625	1e-49
Q5XGW6	222	Charged multivesicular bo	N/A	N/A	0.984	0.846	0.625	2e-49
Q6GL11	222	Charged multivesicular bo	yes	N/A	0.984	0.846	0.625	3e-49
Q6IQ73	224	Charged multivesicular bo	yes	N/A	0.994	0.848	0.628	3e-48
Q5ZHP5	227	Charged multivesicular bo	no	N/A	0.879	0.740	0.674	4e-47
Q7ZVC4	220	Charged multivesicular bo	no	N/A	0.968	0.840	0.621	3e-45
Q96CF2	233	Charged multivesicular bo	no	N/A	0.973	0.798	0.539	2e-44
Q9D7F7	232	Charged multivesicular bo	no	N/A	0.968	0.797	0.524	2e-42
Q6GNN8	227	Charged multivesicular bo	N/A	N/A	0.989	0.832	0.565	2e-42

>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2

 Score =  196 bits (498), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 5/192 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 35  MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct: 95  ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
           FG + DEDEL  ELE LEQEELDK+LL++S P    LP +PS A   KP    + K+   
Sbjct: 155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKP----AKKKEEE 210

Query: 180 EDEIRELEAWAS 191
           +D+++ELE WA 
Sbjct: 211 DDDMKELENWAG 222

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4B filaments can promote or stabilize negative curvature and outward budding.
Mus musculus (taxid: 10090)

>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 5/192 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 35  MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct: 95  ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
           FG + DEDEL  ELE LEQEELDK+LL++S P    LP +PS A   KP    + K+   
Sbjct: 155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPSKP----AKKKEEE 210

Query: 180 EDEIRELEAWAS 191
           +D+++ELE WA 
Sbjct: 211 DDDMKELENWAG 222

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4B filaments can promote or stabilize negative curvature and outward budding. Via its interaction with PDCD6IP involved in HIV-1 p6-and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%), Gaps = 4/192 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33  MLAKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+KAAH +MD+ +V ++M DIA+QQ++A+EIS+AIS PV 
Sbjct: 93  ALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
           FG D DEDEL  ELE LEQEELDK+LL++  P    LP +P+ +   KP +K   K+   
Sbjct: 153 FGEDFDEDELMAELEELEQEELDKNLLEVQGPETVPLPNVPAASLPAKPVKK---KQEED 209

Query: 180 EDEIRELEAWAS 191
           +D++RELE WA+
Sbjct: 210 DDDMRELENWAT 221

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 4/192 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33  MLTKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+KAAH +MD+ +V ++M DIA+QQ++A+EIS+AIS PV 
Sbjct: 93  ALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
           FG D DEDEL  ELE LEQEELDK+LL++  P    LP +P+     KP +K   K+   
Sbjct: 153 FGEDFDEDELMAELEELEQEELDKNLLEVQGPETVPLPNVPAAVLPAKPVKK---KQEED 209

Query: 180 EDEIRELEAWAS 191
           +D++RELE WA+
Sbjct: 210 DDDMRELENWAT 221

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 144/191 (75%), Gaps = 1/191 (0%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQ+FLEKKI  E+ IA+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33  MLAKKQDFLEKKIDAELLIAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+K AH++MD+++V D+M DI EQQ++A+EIS+AIS PV 
Sbjct: 93  ALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
           FG + DEDEL  ELE LEQEELDKDLL++S P    LP +PS     K       ++   
Sbjct: 153 FGEEFDEDELMAELEELEQEELDKDLLQISGPEDVPLPNVPSNPLPKKTAVAQKKRQEED 212

Query: 180 EDEIRELEAWA 190
           ED++ EL+AWA
Sbjct: 213 EDDMEELKAWA 223

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1

 Score =  187 bits (475), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 133/169 (78%), Gaps = 1/169 (0%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  AR +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 37  MLSKKQEFLEKKIEQELAAARKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 96

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIAEQQ++A EIS AIS PV 
Sbjct: 97  ALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKP 168
           FG + DEDEL  ELE LEQEELDK+LL++S P    LP +PS +   KP
Sbjct: 157 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSISIPSKP 205

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 150/193 (77%), Gaps = 8/193 (4%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQEFLEKKI +E+  A+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33  MLTKKQEFLEKKIEQELVTAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE A+TNT V+  M  AA A+KAAH +MD+++V ++M DI EQQ++A+EIS+AIS PV 
Sbjct: 93  ALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKL--STPGGELPEIPSTAPKDKPKEKASTKERS 178
           FG + DEDEL  ELE LEQEELDK+LL++  + P   LP +PST+   +P   A  KE  
Sbjct: 153 FGEEFDEDELLAELEELEQEELDKNLLEIGDNVP---LPNVPSTSLPSRP---AKKKEEE 206

Query: 179 VEDEIRELEAWAS 191
            ED++++LEAWA+
Sbjct: 207 DEDDMKDLEAWAA 219

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C PE=1 SV=1

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 147/204 (72%), Gaps = 18/204 (8%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQE+LE +I  EI +A+ +GT+NKRAA+QALKRKKR+EKQL QIDGTLSTIE QRE
Sbjct: 35  MLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQRE 94

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ++TNT VL  M  AA A+K+ H++MD+N++ D+M +I EQQD+A+EISEA S  V 
Sbjct: 95  ALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVG 154

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTA----PKDKP-------K 169
           FG D DEDEL  ELE LEQEEL+K +  +      LP +PS++    P  KP       +
Sbjct: 155 FGDDFDEDELMAELEELEQEELNKKMTNI-----RLPNVPSSSLPAQPNRKPGMSSTARR 209

Query: 170 EKASTKERSVE--DEIRELEAWAS 191
            +A++ +R+ E  D+I++L AWA+
Sbjct: 210 SRAASSQRAEEEDDDIKQLAAWAT 233

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 139/204 (68%), Gaps = 19/204 (9%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQE+LE +I  E+ +A+ +G++NKRAA+QALKRKKR+EKQL Q+DGTLSTIE QRE
Sbjct: 35  MLAKKQEYLENRIQRELALAKKHGSQNKRAALQALKRKKRFEKQLTQVDGTLSTIEFQRE 94

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ++TNT VL  M  AA A+KA H +MD+N++ D+M DI EQQD+A+EISEA S  V 
Sbjct: 95  ALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQDIAQEISEAFSQRVQ 154

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSV- 179
           F    DE EL  ELE LEQEEL+K +  L     ELP +PS++   +P  KAS    SV 
Sbjct: 155 FADGFDEAELLAELEELEQEELNKKMTSL-----ELPNVPSSSLPAQPSRKASMPS-SVH 208

Query: 180 ------------EDEIRELEAWAS 191
                       +D+ ++L AWA+
Sbjct: 209 RSRAASSRRAEEDDDFKQLAAWAT 232

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 142/191 (74%), Gaps = 2/191 (1%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           ML KKQE+LEKKI  E+  A+ +GTKNKRAA+QALK+KKR EKQL QIDGTLSTIE QRE
Sbjct: 39  MLTKKQEYLEKKIELELATAKKHGTKNKRAALQALKKKKRLEKQLAQIDGTLSTIEFQRE 98

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ++TNT VL  M  AA A+KAAH++MD+ ++ D+M DI EQQDVA+EIS+AIS PV 
Sbjct: 99  ALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQEISDAISRPVG 158

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVE 180
           FG + DEDEL +ELE LEQE+L+  +  ++ P     ++PST    +P   +S K+   +
Sbjct: 159 FGDEFDEDELLEELEELEQEDLNSQMANVNLPSVPSSKLPSTKLPSRP--ASSRKKVEDD 216

Query: 181 DEIRELEAWAS 191
           D+++ L AWA+
Sbjct: 217 DDMQMLAAWAT 227

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
289739563	234	hypothatical protein [Glossina morsitans	0.994	0.811	0.660	3e-66
383865789	221	PREDICTED: charged multivesicular body p	0.989	0.855	0.770	2e-65
195456017	227	GK22870 [Drosophila willistoni] gi|19417	1.0	0.841	0.654	1e-64
332028439	221	Charged multivesicular body protein 4b [	0.984	0.850	0.746	4e-63
195474956	226	GE22521 [Drosophila yakuba] gi|194175853	1.0	0.845	0.653	4e-63
194863252	226	GG10579 [Drosophila erecta] gi|190662218	1.0	0.845	0.647	5e-63
195401617	228	GJ18577 [Drosophila virilis] gi|19414241	0.842	0.706	0.745	7e-63
28573949	226	shrub [Drosophila melanogaster] gi|17861	1.0	0.845	0.653	9e-63
195119458	227	GI19821 [Drosophila mojavensis] gi|19390	0.842	0.709	0.745	1e-62
195154148	231	GL17464 [Drosophila persimilis] gi|19846	0.842	0.696	0.745	1e-62

>gi|289739563|gb|ADD18529.1| hypothatical protein [Glossina morsitans morsitans]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 161/203 (79%), Gaps = 13/203 (6%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI EE+NIAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLESKIEEELNIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALKAAH++MDV++VHDMMDDIAEQQDVA+EISEAISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKAAHQNMDVDKVHDMMDDIAEQQDVAREISEAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEK--------- 171
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE+P+    +K KEK         
Sbjct: 151 FGADIDDEDLERELDELEQENFDKEIIGIPEPAATLPEVPADELPEKAKEKKKVTNPSNA 210

Query: 172 ---ASTKERSVEDEI-RELEAWA 190
              A T    ++D + +EL +WA
Sbjct: 211 TAAAPTGGDDMDDPVMKELLSWA 233

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865789|ref|XP_003708355.1| PREDICTED: charged multivesicular body protein 4b-like [Megachile rotundata]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 164/192 (85%), Gaps = 3/192 (1%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQ+FLE KI  EI +AR NGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE
Sbjct: 32  MLIKKQDFLESKIELEIQVARKNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 91

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK+ H+HMDV+QVHDMMDDIAEQQDVAKEIS+AISNPVA
Sbjct: 92  ALESANTNTAVLTTMKNAADALKSVHQHMDVDQVHDMMDDIAEQQDVAKEISDAISNPVA 151

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTA-PKDKPKEKASTKERSV 179
           FG DVDE+ELEKELE LEQE+LDK+LL +  P  ELP +P+T  P    + +A TK    
Sbjct: 152 FGQDVDEEELEKELEELEQEQLDKELLGIE-PTDELPNVPATTIPSAPARTRAKTKPDED 210

Query: 180 EDEIRELEAWAS 191
           ED ++ELEAWAS
Sbjct: 211 ED-LKELEAWAS 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195456017|ref|XP_002074966.1| GK22870 [Drosophila willistoni] gi|194171051|gb|EDW85952.1| GK22870 [Drosophila willistoni]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 159/197 (80%), Gaps = 6/197 (3%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI EE+N AR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLESKIEEELNTARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK+AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKSAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVE 180
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+    +K KEK  T  +  +
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTHTLPEAPTEDLPEKAKEKKKTPAKVSD 210

Query: 181 DEI------RELEAWAS 191
            E+      ++L +WA+
Sbjct: 211 PEVDDDPDMKQLLSWAN 227

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028439|gb|EGI68482.1| Charged multivesicular body protein 4b [Acromyrmex echinatior]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 164/193 (84%), Gaps = 5/193 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI  EI IA+ N +KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE
Sbjct: 32  MLIKKQEFLESKIDNEILIAKKNASKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 91

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMK AADA+KAAH+HMDV+QVHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 92  ALESANTNTAVLTTMKGAADAMKAAHQHMDVDQVHDMMDDIAEQQDVAREISDAISNPVA 151

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAP--KDKPKEKASTKERS 178
           FG D DEDELEKELE L+QE+LDK+LL + T   ELP +P++ P    K + KA  +E  
Sbjct: 152 FGQDADEDELEKELEELQQEQLDKELLGIDTTTDELPAVPTSVPVAPSKTRTKAKPEE-- 209

Query: 179 VEDEIRELEAWAS 191
            +D+++ELEAWAS
Sbjct: 210 -DDDLKELEAWAS 221

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474956|ref|XP_002089752.1| GE22521 [Drosophila yakuba] gi|194175853|gb|EDW89464.1| GE22521 [Drosophila yakuba]

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 162/196 (82%), Gaps = 5/196 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI +E+NIAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLEAKIEDELNIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKTAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS-TAPKDKPKEKASTKERSV 179
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+   P+   ++K +T   +V
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKEKKKATTTNAV 210

Query: 180 EDE----IRELEAWAS 191
           ED+    +++L +W++
Sbjct: 211 EDDDDPVMKQLISWSN 226

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863252|ref|XP_001970351.1| GG10579 [Drosophila erecta] gi|190662218|gb|EDV59410.1| GG10579 [Drosophila erecta]

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 163/196 (83%), Gaps = 5/196 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI +E+NIAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLEAKIEDELNIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK+AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKSAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS-TAPKDKPKEKASTKERSV 179
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+   P+   ++K +T   +V
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKEKKKATTTNAV 210

Query: 180 EDE----IRELEAWAS 191
           +D+    +++L +W++
Sbjct: 211 DDDDDPVMKQLISWSN 226

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401617|ref|XP_002059409.1| GJ18577 [Drosophila virilis] gi|194142415|gb|EDW58821.1| GJ18577 [Drosophila virilis]

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 142/161 (88%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI EE+N AR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLESKIEEELNTARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK+AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKSAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS 161
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPT 191

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573949|ref|NP_610462.3| shrub [Drosophila melanogaster] gi|17861598|gb|AAL39276.1| GH13992p [Drosophila melanogaster] gi|28381065|gb|AAF58977.2| shrub [Drosophila melanogaster] gi|220945254|gb|ACL85170.1| shrb-PA [synthetic construct] gi|220954992|gb|ACL90039.1| shrb-PA [synthetic construct]

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 162/196 (82%), Gaps = 5/196 (2%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI +E+NIAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLEAKIEDELNIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS-TAPKDKPKEKASTKERSV 179
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+   P+   ++K +T   +V
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKEKKKATTTTAV 210

Query: 180 ED----EIRELEAWAS 191
           ED    ++++L +W++
Sbjct: 211 EDDDDPDMKQLLSWSN 226

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195119458|ref|XP_002004248.1| GI19821 [Drosophila mojavensis] gi|193909316|gb|EDW08183.1| GI19821 [Drosophila mojavensis]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 142/161 (88%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI EE+N AR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLESKIEEELNTARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK+AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKSAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS 161
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPT 191

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195154148|ref|XP_002017984.1| GL17464 [Drosophila persimilis] gi|198460135|ref|XP_001361621.2| GA20793 [Drosophila pseudoobscura pseudoobscura] gi|194113780|gb|EDW35823.1| GL17464 [Drosophila persimilis] gi|198136915|gb|EAL26200.2| GA20793 [Drosophila pseudoobscura pseudoobscura]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 142/161 (88%)

Query: 1   MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           MLIKKQEFLE KI +E++IAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct: 31  MLIKKQEFLEAKIEDELSIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
           ALE ANTNTAVLTTMKNAADALK AH+HMDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct: 91  ALESANTNTAVLTTMKNAADALKNAHQHMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS 161
           FG D+D+++LE+EL+ LEQE  DK+++ +  P   LPE P+
Sbjct: 151 FGADLDDEDLERELDELEQENFDKEIIGIPEPAPTLPEAPT 191

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
FB|FBgn0086656	226	shrb "shrub" [Drosophila melan	1.0	0.845	0.607	6.3e-53
ZFIN|ZDB-GENE-040426-906	220	zgc:56112 "zgc:56112" [Danio r	0.649	0.563	0.685	1.1e-46
UNIPROTKB|Q5ZHP5	227	CHMP4B "Charged multivesicular	0.979	0.823	0.554	1.6e-45
MGI|MGI:1922858	224	Chmp4b "charged multivesicular	0.973	0.830	0.544	1.9e-44
ZFIN|ZDB-GENE-040426-2812	224	chmp4b "chromatin modifying pr	0.984	0.839	0.549	1.9e-44
UNIPROTKB|Q9H444	224	CHMP4B "Charged multivesicular	0.973	0.830	0.544	2.4e-44
UNIPROTKB|F1S4Z2	224	CHMP4B "Uncharacterized protei	0.973	0.830	0.539	3.9e-44
UNIPROTKB|Q08E32	224	CHMP4B "CHMP4B protein" [Bos t	0.973	0.830	0.544	5e-44
UNIPROTKB|E2RDX2	224	CHMP4B "Uncharacterized protei	0.973	0.830	0.539	1.3e-43
RGD|1309846	224	Chmp4b "charged multivesicular	0.973	0.830	0.534	1.3e-43

FB|FBgn0086656 shrb "shrub" [Drosophila melanogaster (taxid:7227)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 119/196 (60%), Positives = 142/196 (72%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             MLIKKQEFLE KI +E+NIAR N +KNKR A+QALK+KKR EKQLQQIDGTLSTIEMQRE
Sbjct:    31 MLIKKQEFLEAKIEDELNIARKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQRE 90

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNTAVLTTMKNAADALK AH++MDV++VHDMMDDIAEQQDVA+EIS+AISNPVA
Sbjct:    91 ALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA 150

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGGELPEIPSTAPKDKPKEKA-STKERSV 179
             FG D+                          P   LPE P+    +K KEK  +T   +V
Sbjct:   151 FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKEKKKATTTTAV 210

Query:   180 EDE----IRELEAWAS 191
             ED+    +++L +W++
Sbjct:   211 EDDDDPDMKQLLSWSN 226

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-906 zgc:56112 "zgc:56112" [Danio rerio (taxid:7955)]

 Score = 424 (154.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 85/124 (68%), Positives = 103/124 (83%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    33 MLTKKQEFLEKKIEQELVTAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE A+TNT V+  M  AA A+KAAH +MD+++V ++M DI EQQ++A+EIS+AIS PV 
Sbjct:    93 ALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

Query:   121 FGHD 124
             FG +
Sbjct:   153 FGEE 156

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q5ZHP5 CHMP4B "Charged multivesicular body protein 4b" [Gallus gallus (taxid:9031)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 106/191 (55%), Positives = 127/191 (66%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  AR +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    37 MLSKKQEFLEKKIEQELAAARKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 96

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIAEQQ++A EIS AIS PV 
Sbjct:    97 ALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS +   KP +K   KE   
Sbjct:   157 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSISIPSKPAKK---KEEEE 213

Query:   180 EDEIRELEAWA 190
             +D+++ELEAWA
Sbjct:   214 DDDMKELEAWA 224

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

MGI|MGI:1922858 Chmp4b "charged multivesicular body protein 4B" [Mus musculus (taxid:10090)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 104/191 (54%), Positives = 127/191 (66%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS A   KP +K   KE   
Sbjct:   155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKPAKK---KEEE- 210

Query:   180 EDEIRELEAWA 190
             +D+++ELE WA
Sbjct:   211 DDDMKELENWA 221

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2812 chmp4b "chromatin modifying protein 4B" [Danio rerio (taxid:7955)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 106/193 (54%), Positives = 127/193 (65%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQ+FLEKKI  E+ IA+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    33 MLAKKQDFLEKKIDAELLIAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+K AH++MD+++V D+M DI EQQ++A+EIS+AIS PV 
Sbjct:    93 ALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS  P  K K   + K+R  
Sbjct:   153 FGEEFDEDELMAELEELEQEELDKDLLQISGPEDVPLPNVPSN-PLPK-KTAVAQKKRQE 210

Query:   180 EDE--IRELEAWA 190
             EDE  + EL+AWA
Sbjct:   211 EDEDDMEELKAWA 223

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q9H444 CHMP4B "Charged multivesicular body protein 4b" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 104/191 (54%), Positives = 127/191 (66%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS A   KP +K   KE   
Sbjct:   155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPSKPAKK---KEEE- 210

Query:   180 EDEIRELEAWA 190
             +D+++ELE WA
Sbjct:   211 DDDMKELENWA 221

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|F1S4Z2 CHMP4B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 103/191 (53%), Positives = 126/191 (65%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS     KP +K   KE   
Sbjct:   155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSITLPSKPTKK---KEEE- 210

Query:   180 EDEIRELEAWA 190
             +D+++ELE WA
Sbjct:   211 DDDMKELETWA 221

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q08E32 CHMP4B "CHMP4B protein" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 104/191 (54%), Positives = 126/191 (65%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS +   KP +K   KE   
Sbjct:   155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPSVPSISLPSKPAKK---KEEED 211

Query:   180 EDEIRELEAWA 190
             ED ++ELE WA
Sbjct:   212 ED-MKELETWA 221

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2RDX2 CHMP4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 103/191 (53%), Positives = 125/191 (65%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLE KI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLETKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS     KP +K   KE   
Sbjct:   155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSITLPSKPTKK---KEEE- 210

Query:   180 EDEIRELEAWA 190
             ED+++ELE WA
Sbjct:   211 EDDMKELENWA 221

GO:0015031 "protein transport" evidence=IEA

RGD|1309846 Chmp4b "charged multivesicular body protein 4B" [Rattus norvegicus (taxid:10116)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 102/191 (53%), Positives = 126/191 (65%)

Query:     1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
             ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct:    35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94

Query:    61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
             ALE ANTNT VL  M  AA A+KAAH +MD+++V ++M DIA+QQ++A++ S AIS PV 
Sbjct:    95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEQTSTAISKPVG 154

Query:   121 FGHDVXXXXXXXXXXXXXXXXXXXXXXXXSTPGG-ELPEIPSTAPKDKPKEKASTKERSV 179
             FG +                         S P    LP +PS A   KP +K   KE   
Sbjct:   155 FGEEFDKDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKPAKK---KEEE- 210

Query:   180 EDEIRELEAWA 190
             +D+++ELE WA
Sbjct:   211 DDDMKELENWA 221

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39929	SNF7_YEAST	No assigned EC number	0.3841	0.8638	0.6875	yes	N/A
Q6IQ73	CHM4C_DANRE	No assigned EC number	0.6282	0.9947	0.8482	yes	N/A
Q6GL11	CHM4B_XENTR	No assigned EC number	0.625	0.9842	0.8468	yes	N/A
Q9D8B3	CHM4B_MOUSE	No assigned EC number	0.625	0.9790	0.8348	yes	N/A
A2VDY3	CHM4A_BOVIN	No assigned EC number	0.5538	0.9790	0.8423	no	N/A
Q5XGW6	CHM4B_XENLA	No assigned EC number	0.625	0.9842	0.8468	N/A	N/A
Q9P7F7	SNF7_SCHPO	No assigned EC number	0.4117	0.9633	0.8288	yes	N/A
Q6BSH2	SNF7_DEBHA	No assigned EC number	0.4162	0.9633	0.8141	yes	N/A
Q9BY43	CHM4A_HUMAN	No assigned EC number	0.5333	0.9790	0.8423	no	N/A
Q7ZVC4	CHM4B_DANRE	No assigned EC number	0.6217	0.9685	0.8409	no	N/A
Q5B5E0	SNF7_EMENI	No assigned EC number	0.4248	0.7853	0.6198	yes	N/A
Q86H98	CHMP4_DICDI	No assigned EC number	0.3657	0.8534	0.7581	yes	N/A
Q6GNN8	CHM4C_XENLA	No assigned EC number	0.5654	0.9895	0.8325	N/A	N/A
Q9SZE4	VP322_ARATH	No assigned EC number	0.3987	0.8481	0.7397	yes	N/A
Q753W3	SNF7_ASHGO	No assigned EC number	0.3777	0.8743	0.7046	yes	N/A
Q9H444	CHM4B_HUMAN	No assigned EC number	0.625	0.9790	0.8348	yes	N/A
P59074	CG301_HUMAN	No assigned EC number	0.6171	0.8795	0.9824	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam03357	169	pfam03357, Snf7, Snf7	2e-44
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	8e-16
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	2e-08

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  144 bits (366), Expect = 2e-44
 Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 8/165 (4%)

Query: 1   MLIKKQEFLEKKIGEEIN-IARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
            L KKQE LEKKI +    I +     NK AA+  LK+KKRYEKQL Q+DG L+ +E  R
Sbjct: 12  ELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVR 71

Query: 60  EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
            A+E A TN  VL  MK  A A+KA +K+MD++++ D+MD+I +Q + A EISE +S+ +
Sbjct: 72  MAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTL 131

Query: 120 AFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAP 164
               + DE+EL+ EL+AL  E  D++L        ELP  PS A 
Sbjct: 132 DDADEEDEEELDAELDALLDEIGDEEL-------VELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score = 72.2 bits (177), Expect = 8e-16
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 19  IARTNGTKNKR---AAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTM 75
           I RT G    R    A+Q L++K+ Y+ Q   +      ++  +   E        +  M
Sbjct: 48  IQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAM 107

Query: 76  KNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELE 135
           K AA  LK   K ++V++V D+ D++A+  +  +EI E +        D+DEDE+  EL+
Sbjct: 108 KQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELD 167

Query: 136 ALE---QEELDKDLL--KLSTPGGELPEIPST 162
           AL+   ++E D   L   L+ PG +LP++P+ 
Sbjct: 168 ALDFDMEKEADASYLADALAVPGTKLPDVPTD 199

Length = 211

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 2   LIKKQEFLEKKIGE-EINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
           L KKQ  +EKKI + EI   +         A   LKRKK YE++++ I     T+E    
Sbjct: 39  LEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98

Query: 61  ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
            LE  + +   +  +  AA+  K  +  ++  +V  ++D I E +D+ +EI++A+S  + 
Sbjct: 99  NLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL 158

Query: 121 FGHDVDEDELEKELEALEQEELDKDLLK 148
             ++VD+DE++KEL+ L+++ +++ LLK
Sbjct: 159 --NNVDDDEIDKELDLLKEQTMEEKLLK 184

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG1656|consensus	221		100.0
PTZ00464	211	SNF-7-like protein; Provisional	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
KOG2910|consensus	209		99.97
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.95
KOG1655|consensus	218		99.93
KOG2911|consensus	439		99.92
KOG3230|consensus	224		99.71
KOG3231|consensus	208		99.42
KOG3229|consensus	227		99.27
KOG3232|consensus	203		98.71
KOG1655|consensus	218		97.81
PTZ00464	211	SNF-7-like protein; Provisional	97.68
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.46
PRK10698	222	phage shock protein PspA; Provisional	97.43
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.13
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.85
COG5491	204	VPS24 Conserved protein implicated in secretion [C	96.73
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	96.14
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	95.0
COG5491	204	VPS24 Conserved protein implicated in secretion [C	94.41
KOG1656|consensus	221		94.02
KOG3229|consensus	227		90.57

>KOG1656|consensus

Probab=100.00  E-value=1e-46  Score=302.89  Aligned_cols=189  Identities=65%  Similarity=0.916  Sum_probs=175.8

Q ss_pred             ChhHHHHHHHHHHHHHHHH-HHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy12999          1 MLIKKQEFLEKKIGEEINI-ARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAA   79 (191)
Q Consensus         1 ~L~kr~~~le~~I~~~~~~-ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~   79 (191)
                      ||.||+++|+++|.++... ||.|+.+||+.|+.||||||+||+||.++.+.+.+|+.+...||+|..|.+|+++|+.|+
T Consensus        32 mL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A  111 (221)
T KOG1656|consen   32 MLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAA  111 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            6999999999999999666 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCC
Q psy12999         80 DALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEI  159 (191)
Q Consensus        80 ~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~v  159 (191)
                      ++||.+|+.|++|+|+++||+|.|+.+.++||+++|+.++++|.++|||||.+||++|++++++..++++..|++.||+|
T Consensus       112 ~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~v  191 (221)
T KOG1656|consen  112 KAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDV  191 (221)
T ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999888899999999999999999999999998888899999


Q ss_pred             CCCCCCCCccchhcccccchHHHHHHHHhhhC
Q psy12999        160 PSTAPKDKPKEKASTKERSVEDEIRELEAWAS  191 (191)
Q Consensus       160 P~~~lp~~~~~~~~~~~~~e~~el~~l~a~~~  191 (191)
                      |+..+|..++..+  ...++|++|++|++||+
T Consensus       192 Ps~~lPa~~~~~~--~a~E~d~~l~~l~~w~~  221 (221)
T KOG1656|consen  192 PSIALPAKPASRP--KAEEDDDDLKELASWAN  221 (221)
T ss_pred             CccccCcccccCC--CcchhhhHHHHHHHhcC
Confidence            9999998744322  22345556999999985

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=3.7e-35  Score=241.86  Aligned_cols=167  Identities=23%  Similarity=0.358  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHHH---HHHHHHHhch--h------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy12999          2 LIKKQEFLEKKIGE---EINIARTNGT--K------NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTA   70 (191)
Q Consensus         2 L~kr~~~le~~I~~---~~~~ak~~~~--k------~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~   70 (191)
                      |++|.+.|++||..   +...||++++  +      +|++|+.|||+||+||++++++.++++||+++.++|+++++|..
T Consensus        23 l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~  102 (211)
T PTZ00464         23 IGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKV  102 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777764   5567887764  2      28899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999         71 VLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLS  150 (191)
Q Consensus        71 v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~  150 (191)
                      ||+||++|+++||.+|++|++|+|+++||+|+|++++++||+++|++++++++++||+||++||++|+.+...+..+   
T Consensus       103 vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~---  179 (211)
T PTZ00464        103 QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADA---  179 (211)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccc---
Confidence            99999999999999999999999999999999999999999999999886667899999999999999875332111   


Q ss_pred             CCCCCCCCCCCCCCCCCccch
Q psy12999        151 TPGGELPEIPSTAPKDKPKEK  171 (191)
Q Consensus       151 ~~~~~lP~vP~~~lp~~~~~~  171 (191)
                      .-...+|+||++.+|+.|..+
T Consensus       180 ~~l~~~~~~p~~~~~~~~~~~  200 (211)
T PTZ00464        180 SYLADALAVPGTKLPDVPTDE  200 (211)
T ss_pred             hhhhccccCCCCCCCCCCCcc
Confidence            012468999999999888653

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=7e-35  Score=236.18  Aligned_cols=145  Identities=31%  Similarity=0.439  Sum_probs=137.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhchhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy12999          1 MLIKKQEFLEKKIGEEINIARTNGTKNK-RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAA   79 (191)
Q Consensus         1 ~L~kr~~~le~~I~~~~~~ak~~~~k~k-~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~   79 (191)
                      +|++|+.+|+.+|+.+...||+++++|+ .+|+.|||+||+||++++++.++++||++++++||+|++|..||+||++|+
T Consensus        38 ~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~  117 (191)
T PTZ00446         38 ALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAA  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999987654 599999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhh
Q psy12999         80 DALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLL  147 (191)
Q Consensus        80 ~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~  147 (191)
                      ++||.+|+.|++|+|+++||+++|++++++||+++|+++++  +++||+||++||++|+++.++..++
T Consensus       118 ~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l~~~ll  183 (191)
T PTZ00446        118 NTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTMEEKLL  183 (191)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998742  5789999999999999999987754

>KOG2910|consensus

Probab=99.97  E-value=2.4e-30  Score=206.51  Aligned_cols=149  Identities=34%  Similarity=0.455  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD   80 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~   80 (191)
                      |.+++..+++.|+.+...||++++. .|.+|+++||+|++++..|.+.++++.||++++..||++...+.|+++|++||.
T Consensus        28 l~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~  107 (209)
T KOG2910|consen   28 LKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNE  107 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999984 578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCC
Q psy12999         81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIP  160 (191)
Q Consensus        81 aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP  160 (191)
                      +||++|+.|++|+|+++||+.+|++++++||+++|++.+.   ..|+|++++||++|+.+...+         ..+|.||
T Consensus       108 ~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls---~~dEddi~~EldaLese~~~e---------~e~PevP  175 (209)
T KOG2910|consen  108 ALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLS---AEDEDDILAELDALESELEVE---------AELPEVP  175 (209)
T ss_pred             HHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc---cccHHHHHHHHHHHHHHhhhh---------hhcCCCC
Confidence            9999999999999999999999999999999999999874   569999999999999886443         2367777


Q ss_pred             CC
Q psy12999        161 ST  162 (191)
Q Consensus       161 ~~  162 (191)
                      ++
T Consensus       176 s~  177 (209)
T KOG2910|consen  176 ST  177 (209)
T ss_pred             CC
Confidence            77

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.95  E-value=2.9e-28  Score=192.80  Aligned_cols=158  Identities=39%  Similarity=0.494  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD   80 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~   80 (191)
                      |++++..|+.+|+.+..+||++++ +++..|+.|||++|++++++.++.+++.+|+.+..+|+++..+..|+.+|+.|++
T Consensus        13 L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~   92 (171)
T PF03357_consen   13 LEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSK   92 (171)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999986 5688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCC
Q psy12999         81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIP  160 (191)
Q Consensus        81 aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP  160 (191)
                      +|+.+++.|++++|+++|++|++.++.+++|+++|+++++.++.+|++||++||++|..+...+..     +...+|+||
T Consensus        93 ~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~-----~~~~lp~~P  167 (171)
T PF03357_consen   93 ALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEE-----EKQQLPSVP  167 (171)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS-------SS-SS---
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhh-----ccccCCcCC
Confidence            999999999999999999999999999999999999887433568999999999999987654321     134688888


Q ss_pred             CCCC
Q psy12999        161 STAP  164 (191)
Q Consensus       161 ~~~l  164 (191)
                      ++++
T Consensus       168 ~~~~  171 (171)
T PF03357_consen  168 STEL  171 (171)
T ss_dssp             HH--
T ss_pred             CCCC
Confidence            7653

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1655|consensus

Probab=99.93  E-value=2.8e-24  Score=172.44  Aligned_cols=140  Identities=29%  Similarity=0.393  Sum_probs=126.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHh---chh-------c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTN---GTK-------N--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~---~~k-------~--k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~   69 (191)
                      +++|.+++++||.+..+...+|   +++       +  |.+|+++||+||+||.|.+.+.++.+|+++..+++++.+.+.
T Consensus        24 v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq  103 (218)
T KOG1655|consen   24 VNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQ  103 (218)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            4788899999998665555443   321       1  789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy12999         70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEEL  142 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l  142 (191)
                      .+|.||+.|++.||..++.|+||+|+++.|+|.+.++..+||+++|+++++++ ++|+++|++||++|.++..
T Consensus       104 ~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen  104 ATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhh
Confidence            99999999999999999999999999999999999999999999999999874 5999999999999987653

>KOG2911|consensus

Probab=99.92  E-value=2.2e-23  Score=184.21  Aligned_cols=155  Identities=30%  Similarity=0.408  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD   80 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~   80 (191)
                      |.+++++|+++|+....++|++++ +.|+.|+.|||+||++++.++++...+.||++++.+|.+|++|+.|+.||+.|+.
T Consensus       245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~  324 (439)
T KOG2911|consen  245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSE  324 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHH
Confidence            689999999999999999999987 4578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCC
Q psy12999         81 ALKAAHKH-MDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEI  159 (191)
Q Consensus        81 aLk~~~~~-~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~v  159 (191)
                      |||.++.. .+.|+|+++||+++|.++.++||+++|+.+...+.+++|++||.||+.|+.+....       ....+|..
T Consensus       325 alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~-------e~~~lp~~  397 (439)
T KOG2911|consen  325 ALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKN-------EDLVLPLN  397 (439)
T ss_pred             HHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccC-------CccCCCCC
Confidence            99999984 47999999999999999999999999998875556899999999999999765321       22346666


Q ss_pred             CCCC
Q psy12999        160 PSTA  163 (191)
Q Consensus       160 P~~~  163 (191)
                      |...
T Consensus       398 ~~sr  401 (439)
T KOG2911|consen  398 SVSR  401 (439)
T ss_pred             CchH
Confidence            6543

>KOG3230|consensus

Probab=99.71  E-value=1.2e-15  Score=122.75  Aligned_cols=125  Identities=18%  Similarity=0.344  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999         28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV  107 (191)
Q Consensus        28 k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~  107 (191)
                      |..|+.+.|.|.+    +.++.++..+|+.+...|.+.+++..+..+|+.++++|..+|++|++..+.++|.+|+.+.+.
T Consensus        59 KimAkdLvRtR~~----i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~  134 (224)
T KOG3230|consen   59 KIMAKDLVRTRRY----IKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEI  134 (224)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence            6678888877766    679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCC
Q psy12999        108 AKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPE  158 (191)
Q Consensus       108 ~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~  158 (191)
                      ++...++++..++  +.+++++-++|-+.|.+++||+..+++.....++|+
T Consensus       135 Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~  183 (224)
T KOG3230|consen  135 MDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPS  183 (224)
T ss_pred             HHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence            9999999999875  567778889999999999999987776543445665

>KOG3231|consensus

Probab=99.42  E-value=1.2e-11  Score=97.57  Aligned_cols=162  Identities=19%  Similarity=0.182  Sum_probs=122.3

Q ss_pred             HHHHHhc-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy12999         18 NIARTNG-TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHD   96 (191)
Q Consensus        18 ~~ak~~~-~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~   96 (191)
                      ..+|+.. .+|+..++-+-|+--.+.+|..+.++....|.++..+...++++..+..||....+.|+.+|+.|+++++-.
T Consensus        43 lEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~  122 (208)
T KOG3231|consen   43 LEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQ  122 (208)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHH
Confidence            3444443 355555554446666677788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC-CCCCCCccchhccc
Q psy12999         97 MMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS-TAPKDKPKEKASTK  175 (191)
Q Consensus        97 ~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~-~~lp~~~~~~~~~~  175 (191)
                      +|.+||-...+++...++++..++  +.+|...-++|-+++.++++|+..+++.+   +|..+|+ .++|...+.++  .
T Consensus       123 tmr~FQ~anmKMemTeEMiNDTLD--dild~sgDeeEs~aiVNqVLDEIGIEisg---Kma~~P~a~s~~~~st~ka--t  195 (208)
T KOG3231|consen  123 TMRNFQKANMKMEMTEEMINDTLD--DILDGSGDEEESQAIVNQVLDEIGIEISG---KMAKAPSARSLPSASTSKA--T  195 (208)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhhHH--HHhcCCCcHHHHHHHHHHHHHHhhhhhcc---hhccCCccCCCCccccCCC--c
Confidence            999999999999999999988764  34555555789999999999998887764   4556664 23444333322  1


Q ss_pred             ccchHHHHHHH
Q psy12999        176 ERSVEDEIREL  186 (191)
Q Consensus       176 ~~~e~~el~~l  186 (191)
                      .++=++.|.+|
T Consensus       196 ~~Die~QLa~L  206 (208)
T KOG3231|consen  196 ISDIERQLAAL  206 (208)
T ss_pred             HHHHHHHHHHh
Confidence            23334455544

>KOG3229|consensus

Probab=99.27  E-value=4.7e-10  Score=91.32  Aligned_cols=125  Identities=14%  Similarity=0.244  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy12999         29 RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVA  108 (191)
Q Consensus        29 ~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~  108 (191)
                      -.|+.+.+.+|.    ..+++.+..+|.++++.+..+-....+...|+.++.+|+.+|+-+.+..+..+|.+|..++.+.
T Consensus        62 iLAKEiv~srk~----v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKa  137 (227)
T KOG3229|consen   62 ILAKEIVQSRKA----VKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKA  137 (227)
T ss_pred             HHHHHHHHHHHH----HHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            366666666665    6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccC-CCCCCCCCCCCCC
Q psy12999        109 KEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLS-TPGGELPEIPSTA  163 (191)
Q Consensus       109 ~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~-~~~~~lP~vP~~~  163 (191)
                      .-|.+++...+.  +..|.+|+++|.++-.+.++.+    +. ++...+|.+|...
T Consensus       138 GIIEEmvdet~e--sv~d~eemeEe~deEVdkIL~~----it~~~~~~~p~a~~~~  187 (227)
T KOG3229|consen  138 GIIEEMVDETME--SVEDSEEMEEEADEEVDKILTE----ITGEKAGEAPLAVTAT  187 (227)
T ss_pred             HHHHHHHHHHHh--cccchhhHHHHHHHHHHHHHHH----HhccccccCCcchHHH
Confidence            999999998764  3345555666665555555443    32 2334566666654

>KOG3232|consensus

Probab=98.71  E-value=6.1e-06  Score=65.94  Aligned_cols=128  Identities=18%  Similarity=0.218  Sum_probs=94.6

Q ss_pred             HHHHHHHHhchh-cHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC
Q psy12999         15 EEINIARTNGTK-NKR----AAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHM   89 (191)
Q Consensus        15 ~~~~~ak~~~~k-~k~----~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~   89 (191)
                      .+..++|+.+.+ |..    -|-.+.|+|..    --++......|..+...+++|.+...|-.+|....+.|-...+.|
T Consensus        34 ~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne----~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktm  109 (203)
T KOG3232|consen   34 AEKAKLKKAIQKGNMDVARIYAENAIRKKNE----AVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTM  109 (203)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            456677777754 543    55666666543    335666777888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999         90 DVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH--DVDEDELEKELEALEQEELDKDLLKLS  150 (191)
Q Consensus        90 ~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~--~~DedeLe~EL~~L~~e~l~~~~~~~~  150 (191)
                      |+++|-.+||.|..+-++.+--...+...++...  ..+.+    +.+.|.+++.|+-.++..
T Consensus       110 NLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~----~Vd~Lmq~vADeaGlEln  168 (203)
T KOG3232|consen  110 NLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQG----DVDSLMQQVADEAGLELN  168 (203)
T ss_pred             CHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChh----HHHHHHHHHHHHhchhhh
Confidence            9999999999999999988877666654332111  23433    445677787777666654

>KOG1655|consensus

Probab=97.81  E-value=0.00093  Score=54.53  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHh---chhcHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTN---GTKNKR--------AAIQALKRKKR-YEKQLQQIDGTLSTIEMQREALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~---~~k~k~--------~A~~~Lk~KK~-~e~ql~k~~~~l~~Le~~~~~ie~a~~~~   69 (191)
                      |..-+..++++-+....++.++   +.+-|.        -|+..||.|.+ .-+|.--+.++..+|.++.|++++|....
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4455777788888777777775   456544        37888988865 36677788999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999         70 AVLTTMKNAADALKAAHKHMD--VNQVH-DMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE  140 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e  140 (191)
                      +-++-=.....|||.-++.|.  ..+|. +-++++|+++++.-+..+-|...++...+.-+.+..+.+.+|..-
T Consensus        97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL  170 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDAL  170 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHH
Confidence            888888888899999888874  44444 456889999999999999999998876777775544444555543

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.68  E-value=0.0031  Score=52.39  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12999         44 QLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD--VNQVH-DMMDDIAEQQDVAKEISEAISNPVA  120 (191)
Q Consensus        44 ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde~~e~~e~~~Ei~e~L~~~~~  120 (191)
                      +.-.+.+++.++..++++|+...+..+....=...-.+|+.-++.|.  ...|. +=++++.+.+..+-+.++-|+..++
T Consensus        69 ~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls  148 (211)
T PTZ00464         69 QKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMG  148 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345666667777777777776666666655555566666555442  12221 2234455555555555556666665


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q psy12999        121 FGHDVDEDELEKELEALE  138 (191)
Q Consensus       121 ~~~~~DedeLe~EL~~L~  138 (191)
                      .+..+.++.-++||++-.
T Consensus       149 ~~~~~~~~~DEdELe~EL  166 (211)
T PTZ00464        149 RAYDVPDDIDEDEMLGEL  166 (211)
T ss_pred             CCCCCCCCCCHHHHHHHH
Confidence            433333444556664433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.46  E-value=0.012  Score=48.48  Aligned_cols=132  Identities=25%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEM-----------QREALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~-----------~~~~ie~a~~~~   69 (191)
                      |++++..++..|..-...|+.++. ++-..|+.+|.+|..++.++..+..++..+..           +-.+|...+...
T Consensus        56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~  135 (221)
T PF04012_consen   56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR  135 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888888888886 45679999999999988887777665554444           344455666777


Q ss_pred             HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999         70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE  138 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~  138 (191)
                      .++.+-..+.++-+.++.   ++++++....++.|.+.++...--.++.....+     +...++.+|+++.
T Consensus       136 ~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~  202 (221)
T PF04012_consen  136 EELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELE  202 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhc
Confidence            778777777777777765   445666677777777776666666666554321     2223777777766

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=97.43  E-value=0.025  Score=47.21  Aligned_cols=114  Identities=15%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTI-----------EMQREALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~L-----------e~~~~~ie~a~~~~   69 (191)
                      ++++...++..|..-..+|+..+.+ +-..|+.+|.+|+.|..++..+..++...           ..+-.+|+.++.-.
T Consensus        57 ~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~  136 (222)
T PRK10698         57 LTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ  136 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777778888888888888864 55699999999999888766665544433           33445567778888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12999         70 AVLTTMKNAADALKAAHKHMD---VNQVHDMMDDIAEQQDVAKEISEAI  115 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~~~~---id~Ve~~mde~~e~~e~~~Ei~e~L  115 (191)
                      .++.+=..+..+-+.+|..++   .+.--.-++.|.+-++..+--.+++
T Consensus       137 ~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        137 QALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence            888888888888888886553   3333344444555555555444444

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.13  E-value=0.091  Score=43.57  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE-----------ALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~-----------~ie~a~~~~   69 (191)
                      +++++..+...+..-...|+..+.+ +-..|+.+|.+|+.++.++..+..++..+...+.           .|+.++...
T Consensus        57 ~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~  136 (219)
T TIGR02977        57 LERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ  136 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777888888888888888864 4569999999999998888777665555444433           334445555


Q ss_pred             HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999         70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE  138 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~  138 (191)
                      .++.+=..+..+-..++.   .++.+..-..++.|.+-++..+--.++...  .     +.+.|+++|+.|.
T Consensus       137 ~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~--~-----~~~~l~~~l~~l~  201 (219)
T TIGR02977       137 KALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL--G-----RKPSLEDEFAELE  201 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc--c-----CCCCHHHHHHHhc
Confidence            544444445666555554   344444444444454444444433333321  1     1233566666665

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.85  E-value=0.0046  Score=48.38  Aligned_cols=151  Identities=20%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy12999          3 IKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRK-----KRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKN   77 (191)
Q Consensus         3 ~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~K-----K~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~   77 (191)
                      ...+..|++++..+...++.+    +..|+.+++..     +.|-+++-++..++.++.....+++......+.......
T Consensus         7 k~~~~~L~~~~~~le~~i~~~----~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~   82 (171)
T PF03357_consen    7 KKTIRRLEKQIKRLEKKIKKL----EKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQ   82 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666555554    34567777543     445666777788999999999999999999988888888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHH--HHHHHH---HHHHHHHHHhcCCCCCCCCCC--HHHHHHHHHHHHHHHhhHhhhccC
Q psy12999         78 AADALKAAHKHMDVNQVHDMMD--DIAEQQ---DVAKEISEAISNPVAFGHDVD--EDELEKELEALEQEELDKDLLKLS  150 (191)
Q Consensus        78 g~~aLk~~~~~~~id~Ve~~md--e~~e~~---e~~~Ei~e~L~~~~~~~~~~D--edeLe~EL~~L~~e~l~~~~~~~~  150 (191)
                      ...+|+..++.|  .++.+-++  ++.+.+   ...-+-.+.++..++  ..++  .+..++|+++...+...+    ..
T Consensus        83 v~~al~~~~~~L--k~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~--~~~~~~~~~dd~ele~eL~~l~~e----~~  154 (171)
T PF03357_consen   83 VVKALKQSSKAL--KKINKQINLDKVEKLMDDFQEEMEDQDEISEALS--DSMDQVDDVDDEELEEELEQLEDE----IE  154 (171)
T ss_dssp             HSSS----SHHH--HHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHC----CC
T ss_pred             HHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--ccccCCCCCCHHHHHHHHHHHHHH----Hh
Confidence            888888766655  34443333  333333   333333444455554  2332  566777777766555442    22


Q ss_pred             CCCCCCCCCCCCCCCCCccc
Q psy12999        151 TPGGELPEIPSTAPKDKPKE  170 (191)
Q Consensus       151 ~~~~~lP~vP~~~lp~~~~~  170 (191)
                      .     ...|...+|+.|+.
T Consensus       155 ~-----~~~~~~~lp~~P~~  169 (171)
T PF03357_consen  155 E-----EEEEKQQLPSVPST  169 (171)
T ss_dssp             T-----TS--SS-SS---HH
T ss_pred             h-----hhhccccCCcCCCC
Confidence            1     11156677887763

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=96.73  E-value=0.13  Score=42.60  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHH-------H
Q psy12999         42 EKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD-VNQVHDMMDDIAEQQDVAKEIS-------E  113 (191)
Q Consensus        42 e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~-id~Ve~~mde~~e~~e~~~Ei~-------e  113 (191)
                      -+.+-++.++.+.|...+..+.+.......--+|...+.-+......|+ +..|.++++.+.-+....+-..       +
T Consensus        41 ~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e  120 (204)
T COG5491          41 AEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDE  120 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566666666666666555544444455555555555555565 6777777766655544443333       3


Q ss_pred             HhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhc
Q psy12999        114 AISNPVAFGHDVDEDELEKELEALEQEELDKDLLK  148 (191)
Q Consensus       114 ~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~  148 (191)
                      ..+.+.   . .+..+..++++++.+.++++..++
T Consensus       121 ~~~v~~---~-~~v~~~l~~lde~v~~v~pEi~le  151 (204)
T COG5491         121 LMDVVV---G-DPVLEDLEELDELVNKVLPEIGLE  151 (204)
T ss_pred             HhccCc---c-chhhhhHHHHHHHHHhhchhhhhh
Confidence            332221   1 345556677777777777665443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=96.14  E-value=0.66  Score=38.90  Aligned_cols=134  Identities=19%  Similarity=0.200  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhHH
Q psy12999          2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQ-----------REALEGANTNT   69 (191)
Q Consensus         2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~-----------~~~ie~a~~~~   69 (191)
                      |+++...+...++.....|+..+. ++-..|..+|-++..|++++..+...+..+...           -.+|......+
T Consensus        57 ~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~  136 (225)
T COG1842          57 LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK  136 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666677777777775 456799999999999988777665544444333           33445556666


Q ss_pred             HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q psy12999         70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQ  139 (191)
Q Consensus        70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~  139 (191)
                      .++.+=..+.++-..+++   .++.+.....++.|.+-++....-.++.++-.    ....+++++||+.+..
T Consensus       137 ~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~----~~~~~dl~~e~a~~~~  205 (225)
T COG1842         137 EALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA----EGSGDDLDKEFAQAGA  205 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh----ccCcccHHHHHHHhcc
Confidence            777766666666666654   55555556666666666666665555555310    1123457778877664

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=95.00  E-value=0.88  Score=37.29  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHH
Q psy12999         29 RAAIQALKRKKR-----YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD--VNQVH-DMMDD  100 (191)
Q Consensus        29 ~~A~~~Lk~KK~-----~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde  100 (191)
                      ..|+.++++.+.     +-++.-.+.+++.++.+++++|++...+.+....=...-.+|+.-++.+.  -..+. +=+|+
T Consensus        55 ~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~  134 (191)
T PTZ00446         55 IEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEK  134 (191)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            457777755442     33444556889999999999999999988887777777777777666552  12222 23567


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999        101 IAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE  138 (191)
Q Consensus       101 ~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~  138 (191)
                      +.+.+..+-+.++-|++.++  ..+.++.-++||++-.
T Consensus       135 lmDei~E~~e~~~EIseaLs--~~~~~~~DEdELe~EL  170 (191)
T PTZ00446        135 IIDTIQENKDIQEEINQALS--FNLLNNVDDDEIDKEL  170 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHc--CCCCCCCCHHHHHHHH
Confidence            77777777778888888874  3443455677775444

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=94.41  E-value=2.5  Score=35.03  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc---CC-CHHHHHHHHHH
Q psy12999         25 TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHK---HM-DVNQVHDMMDD  100 (191)
Q Consensus        25 ~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~---~~-~id~Ve~~mde  100 (191)
                      +..+..+..++|-+++    ..++......|+.....+........+...|..++..|+.+..   -+ .++.+...|+-
T Consensus        35 ~~~~~l~~~~~~~~~~----~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~  110 (204)
T COG5491          35 PNRRRLAEELYKLRKA----RSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALEL  110 (204)
T ss_pred             hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556655555544    5678888888888777788888888888888888888885543   22 25556666666


Q ss_pred             HHHHHHHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHHHH
Q psy12999        101 IAEQQDVAKEISEAISN-PVAFGHDVDEDELEKELEALEQEE  141 (191)
Q Consensus       101 ~~e~~e~~~Ei~e~L~~-~~~~~~~~DedeLe~EL~~L~~e~  141 (191)
                      .+.-++.+.+..+.... +.    ..+.+++++++..+..+.
T Consensus       111 ~~~~le~m~e~~~v~~~~~v----~~~l~~lde~v~~v~pEi  148 (204)
T COG5491         111 VQLRLETMDELMDVVVGDPV----LEDLEELDELVNKVLPEI  148 (204)
T ss_pred             HHHHHHHHHHHhccCccchh----hhhHHHHHHHHHhhchhh
Confidence            66666788777776665 43    246778888888777654

>KOG1656|consensus

Probab=94.02  E-value=3  Score=34.54  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHH
Q psy12999         31 AIQALKRKKRY-E---KQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD-VN------QVHDMMD   99 (191)
Q Consensus        31 A~~~Lk~KK~~-e---~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~-id------~Ve~~md   99 (191)
                      |+.+..+-|+. -   +..-.+.+++.+|.+++.+|++....   +..-...+.+|..+...-+ .-      +||+ +|
T Consensus        52 A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a---lEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDk-Vd  127 (221)
T KOG1656|consen   52 ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA---LENANTNTEVLDAMGSAAKAMKAAHKNMDIDK-VD  127 (221)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHcccccHHHHHHHHHHHHHHHHHHhccChhH-HH
Confidence            55555333332 2   22345678899999998888876655   4444445555555543221 22      3443 46


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999        100 DIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE  140 (191)
Q Consensus       100 e~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e  140 (191)
                      ++-+.+..+.++.+-|+..+..+-.+..+=-++||.+-..+
T Consensus       128 d~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELde  168 (221)
T KOG1656|consen  128 DLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDE  168 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHH
Confidence            77777888889999999998765556566667788655534

>KOG3229|consensus

Probab=90.57  E-value=9  Score=31.87  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999        126 DEDELEKELEALEQEELDKDLLKLS  150 (191)
Q Consensus       126 DedeLe~EL~~L~~e~l~~~~~~~~  150 (191)
                      .+++.++|.+.+.-+...+.+.+.+
T Consensus       157 meEe~deEVdkIL~~it~~~~~~~p  181 (227)
T KOG3229|consen  157 MEEEADEEVDKILTEITGEKAGEAP  181 (227)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCC
Confidence            5677888999888887776655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
4abm_A	79	Crystal Structure Of Chmp4b Hairpin Length = 79		4e-22
3um3_B	104	Crystal Structure Of The Brox Bro1 Domain In Comple		1e-08

>pdb|4ABM|A Chain A, Crystal Structure Of Chmp4b Hairpin Length = 79

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 56/63 (88%)
Query: 1  MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
          ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 17 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76
Query: 61 ALE 63
          ALE
Sbjct: 77 ALE 79

>pdb|3UM3|B Chain B, Crystal Structure Of The Brox Bro1 Domain In Complex With The C- Terminal Tail Of Chmp4b Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 88  HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVXXXXXXXXXXXXXXXXXXXXXX 147
           +MD+++V ++M DIA+QQ++A+EIS AIS PV FG +                       
Sbjct: 2   NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLL 61
Query: 148 XXSTPGG-ELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWA 190
             S P    LP +PS A   KP    + K+   +D+++ELE WA
Sbjct: 62  EISGPETVPLPNVPSIALPSKP----AKKKEEEDDDMKELENWA 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	1e-18
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	2e-17
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	1e-09
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens} Length = 104

 Score = 76.2 bits (187), Expect = 1e-18
 Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 5/105 (4%)

Query: 88  HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLL 147
           +MD+++V ++M DIA+QQ++A+EIS AIS PV FG + DEDEL  ELE LEQEELDK+LL
Sbjct: 2   NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLL 61

Query: 148 KLSTPGG-ELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWAS 191
           ++S P    LP +PS A   KP +K   +    +D+++ELE WA 
Sbjct: 62  EISGPETVPLPNVPSIALPSKPAKKKEEE----DDDMKELENWAG 102

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Length = 79

 Score = 72.2 bits (177), Expect = 2e-17
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query: 1  MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
          ML KKQEFLEKKI +E+  A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 17 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76

Query: 61 ALE 63
          ALE
Sbjct: 77 ALE 79

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 4/186 (2%)

Query: 3   IKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREAL 62
           I+  +  E+K+   +  A   G   K   I   K   R  K + ++  + + +      +
Sbjct: 30  IRDIQREEEKVKRSVKDAAKKG--QKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGM 87

Query: 63  EGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG 122
           +       V  +++ + + +KA    + + ++   M +++++   A  I E + +   F 
Sbjct: 88  KNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLED--TFE 145

Query: 123 HDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDE 182
              D++E+E+E E      L +                   P+      AS  E   E+ 
Sbjct: 146 SMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEA 205

Query: 183 IRELEA 188
           +  +++
Sbjct: 206 LEAMQS 211

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 23/152 (15%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 3   IKKQEFLEKKIGEEINIARTNGTKNK-RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREA 61
           I+  +  E+K+   +  A   G K+      + + R ++   +L      ++++ M    
Sbjct: 30  IRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG--- 86

Query: 62  LEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV-- 119
           ++       V  +++ + + +KA    + + ++   M +++++   A  I E + +    
Sbjct: 87  MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES 146

Query: 120 AFGHDVDEDELEKELEALEQEELDKDLLKLST 151
               +  E+E E E++ +  E     L K  +
Sbjct: 147 MDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 54/203 (26%)

Query: 2   LIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKR-------YEKQLQQIDGTLST 54
           +++  + L  +I      +R++ + N +  I +++ + R       YE  L  +    + 
Sbjct: 198 VLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN- 255

Query: 55  IEMQREALEGANTN--TAVLTTMKNAADALKAAH-KHMDVNQVHDMMDDIAEQQDV-AKE 110
                +A    N +    + T  K   D L AA   H+ ++     +    E + +  K 
Sbjct: 256 ----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKY 310

Query: 111 IS--------EAIS-NPVA---FG---HD----------VDEDEL----EKELEALEQEE 141
           +         E ++ NP           D          V+ D+L    E  L  LE  E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 142 LDKDLLKLSTPGGELPE---IPS 161
             K   +LS      P    IP+
Sbjct: 371 YRKMFDRLSV----FPPSAHIPT 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.92
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.71
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.59
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.56
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	99.09
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	98.53
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	96.7
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	94.65
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	90.74

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.92  E-value=9.5e-25  Score=160.23  Aligned_cols=101  Identities=53%  Similarity=0.878  Sum_probs=89.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCC-CCCCCCCCCCCCC
Q psy12999         87 KHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPK  165 (191)
Q Consensus        87 ~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~-~~~lP~vP~~~lp  165 (191)
                      ++|++|+|+++||++++++++++||+++|+++++++..+|++||++||++|+++.+++.++.++++ ...||+||++++|
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp   80 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALP   80 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCC
Confidence            468999999999999999999999999999998777789999999999999999999988887654 3579999999999


Q ss_pred             CCccchhcccccchHHHHHHHHhhhC
Q psy12999        166 DKPKEKASTKERSVEDEIRELEAWAS  191 (191)
Q Consensus       166 ~~~~~~~~~~~~~e~~el~~l~a~~~  191 (191)
                      +.|+++    ...+|+++++|++||+
T Consensus        81 ~~p~~~----~~~edde~~~L~~wa~  102 (104)
T 3um3_B           81 SKPAKK----KEEEDDDMKELENWAG  102 (104)
T ss_pred             CCcccC----CccchHHHHHHHHHHh
Confidence            887632    3457889999999995

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.71  E-value=1.5e-18  Score=138.79  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999         28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV  107 (191)
Q Consensus        28 k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~  107 (191)
                      |..|+.++|.||+    ..++..+..+|+++.+.++++.++..|+.+|+.++++|+.+|+.|++++|..+|++|.+++++
T Consensus        57 ki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~  132 (179)
T 2gd5_A           57 IVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK  132 (179)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            5589999999986    668888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC
Q psy12999        108 AKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS  161 (191)
Q Consensus       108 ~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~  161 (191)
                      +++|+++|+++++  +..|+++.++|.+++.+.++++...      ..||.+|+
T Consensus       133 ~~~~~E~m~d~~~--~~~~~~~~eee~d~~v~kVl~E~~~------~~l~~~P~  178 (179)
T 2gd5_A          133 AGIIEEMLEDTFE--SMDDQEEMEEEAEMEIDRILFEITA------GALGKAPS  178 (179)
T ss_dssp             HTSCC---------------------CTTHHHHTTCCC----------------
T ss_pred             HHHHHHHHHHHHh--hcccCCCcHHHHHHHHHHHHHHhhH------hhcccCCC
Confidence            9999999999875  3345566777888888887775321      24777775

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.59  E-value=9.4e-16  Score=126.05  Aligned_cols=141  Identities=13%  Similarity=0.173  Sum_probs=86.3

Q ss_pred             HHHHHHhchh-c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCH
Q psy12999         17 INIARTNGTK-N----KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDV   91 (191)
Q Consensus        17 ~~~ak~~~~k-~----k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~i   91 (191)
                      ...+|+++++ +    |..|+.+.|.||.    ..+++.+..+|.++.+.+.++.++..|..+|+.++++|+.+|+.|++
T Consensus        41 ~~~IKkaakkg~~~~arilAkelVR~Rk~----~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l  116 (218)
T 3frt_A           41 KRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI  116 (218)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            3444555443 3    5577777777766    66999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCCCCCCC
Q psy12999         92 NQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKD  166 (191)
Q Consensus        92 d~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~~~lp~  166 (191)
                      .+|..+|++|..++++++-+++++...++  +..|+++.++|-+.+.+.++++.+.   +.....|++|+.++|.
T Consensus       117 ~~i~~tM~efekE~~k~~i~eEmm~Da~d--~~~~~~~~eee~d~~v~kVldEi~~---~~l~~~p~~~~~~~~~  186 (218)
T 3frt_A          117 PEIQATMRELSKEMMKAGIIEEMLEDTFE--SMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSKVTDALPE  186 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHSCC------------------CTTSTTTHHHHHHHTC---------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--cccccCCchHHHHHHHHHHHHHHhH---hHhhcCCCCCCCCCCC
Confidence            99999999999999999999999998764  2334455566777777777775321   1223456666556664

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=101.68  Aligned_cols=63  Identities=81%  Similarity=1.046  Sum_probs=60.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999          1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALE   63 (191)
Q Consensus         1 ~L~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie   63 (191)
                      ||++++.+|+.+|+.+...||+++.+||.+|+.|||+||+||++|+++.++++||++++++||
T Consensus        17 ~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A           17 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999998875

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.6e-11  Score=80.23  Aligned_cols=54  Identities=28%  Similarity=0.579  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHHHh
Q psy12999         89 MDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG--HDVDEDELEKELEALEQEEL  142 (191)
Q Consensus        89 ~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~--~~~DedeLe~EL~~L~~e~l  142 (191)
                      |+|++|++++|+|.+.++.++||+++|+++++++  +++|+++|++||++|..+.+
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~   56 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF   56 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence            5799999999999999999999999999998775  37999999999999998765

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=98.53  E-value=6.9e-09  Score=67.46  Aligned_cols=37  Identities=46%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy12999        105 QDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEEL  142 (191)
Q Consensus       105 ~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l  142 (191)
                      ++..+||+++|+++++++ ++||+||++||++|+++..
T Consensus         1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~   37 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELL   37 (57)
T ss_dssp             ---------------CCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHh
Confidence            467899999999998875 8999999999999998864

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=96.70  E-value=0.0022  Score=43.01  Aligned_cols=43  Identities=33%  Similarity=0.456  Sum_probs=26.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC
Q psy12999        118 PVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS  161 (191)
Q Consensus       118 ~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~  161 (191)
                      +++++ ++||++|++||++|..+..-+..+.--.+...+|.+|.
T Consensus         2 sy~~p-diDE~eL~aELdaL~~e~~~~~~pSyL~~~~~~P~~p~   44 (69)
T 3uly_B            2 SYGTP-ELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPE   44 (69)
T ss_pred             CCCCC-CCCHHHHHHHHHHHHHHHhcccCcchhhccccCCCCCC
Confidence            44554 79999999999999977532211000012346777776

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=94.65  E-value=0.018  Score=46.89  Aligned_cols=17  Identities=29%  Similarity=0.317  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy12999        127 EDELEKELEALEQEELD  143 (191)
Q Consensus       127 edeLe~EL~~L~~e~l~  143 (191)
                      +++.+++.+....+...
T Consensus       154 eee~d~~v~kVldEi~~  170 (218)
T 3frt_A          154 EEEAEMEIDRILFEITA  170 (218)
T ss_dssp             TTSTTTHHHHHHHTC--
T ss_pred             hHHHHHHHHHHHHHHhH
Confidence            34444555554444433

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=90.74  E-value=0.12  Score=40.28  Aligned_cols=84  Identities=7%  Similarity=0.109  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHHH---HHHHHHHHHh
Q psy12999         41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMM--DDIAEQQ---DVAKEISEAI  115 (191)
Q Consensus        41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~m--de~~e~~---e~~~Ei~e~L  115 (191)
                      |=+++-+...+..+|-....+|+........+.+.....++|+...+.  +..+...|  +.++..+   +..-+..+++
T Consensus        59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~  136 (179)
T 2gd5_A           59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGII  136 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            444566777778888888888888888777776665555555543332  34444444  3444333   3333444444


Q ss_pred             cCCCCCCCCCCHH
Q psy12999        116 SNPVAFGHDVDED  128 (191)
Q Consensus       116 ~~~~~~~~~~Ded  128 (191)
                      +..++  +.+|+.
T Consensus       137 ~E~m~--d~~~~~  147 (179)
T 2gd5_A          137 EEMLE--DTFESM  147 (179)
T ss_dssp             C------------
T ss_pred             HHHHH--HHHhhc
Confidence            55543  455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00