Psyllid ID: psy13019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEVTSDQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHccHHHHHHccEEccccccccccccccccccccccccccHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mtdatnivpdtasanndyNEFMNDLEEDVLYRQNvniykagpeipvdandintededpdapriTLEEMLddltiddvdmeeevtsdq
Flexible Loop (DISEMBL)
mtdatnivpdtasanndyNEFMNDLEEDVLYRQNVNIYKAGpeipvdandinteDEDPDAPRITLEEmlddltiddvdmeeevtsdq
Low Complexity Region (SEG)
MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEVTSDQ
Disordered region (IsUnstruct)
*******************EFMNDLEEDVLYRQNVNIYKAGPEI*******************************************
Disordered Region (DISOPRED)
*****************YNEFMNDLEEDVLYRQNVNIYK**********************RITLEEMLDDLTI*************
Disordered Region (DISEMBL)
MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM********
Disordered Region (DISPRO)
******IVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGP***************PDAPRITLEEMLDDLTI*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEVTSDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q96D46	503	60S ribosomal export prot	yes	N/A	0.712	0.123	0.485	1e-06
Q5RC82	503	60S ribosomal export prot	yes	N/A	0.712	0.123	0.485	1e-06
Q99L48	503	60S ribosomal export prot	yes	N/A	0.712	0.123	0.470	4e-06
Q08DS5	503	60S ribosomal export prot	yes	N/A	0.586	0.101	0.526	5e-06
Q6P2Z6	504	60S ribosomal export prot	yes	N/A	0.586	0.101	0.508	5e-06

>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)

Query: 18  YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
           Y +F+ DLEED   R+NVNIY+    IPV++   +T+DE   APRI+L EML+DL I   
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492

Query: 78  DMEEEVTS 85
              EE  S
Sbjct: 493 ATGEEGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.
Homo sapiens (taxid: 9606)

>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)

Query: 18  YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
           Y +F+ DLEED   R+NVNIY+    IPV++   +T+DE   APRI+L EML+DL I   
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492

Query: 78  DMEEEVTS 85
              EE  S
Sbjct: 493 ATGEEGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Pongo abelii (taxid: 9601)

>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)

Query: 18  YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
           Y +F+ DLEED   R++VNIY+    IPV++   +T+DE   APRI+L EML+DL I   
Sbjct: 439 YQDFLEDLEEDEAIRKHVNIYRDA-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492

Query: 78  DMEEEVTS 85
              EE  S
Sbjct: 493 ATGEEGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)

Query: 18  YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
           Y +F+ DLEED   R+NVNIY+    IPV++   +T+DE   APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 6/57 (10%)

Query: 18  YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
           Y +F+ DLEED + R+NVNIYK    +PV++   +T++E   APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
427789331	511	Putative 60s ribosomal export protein nm	0.747	0.127	0.6	5e-14
357604777	467	nonsense-mediated mRNA 3 [Danaus plexipp	0.747	0.139	0.571	7e-14
346471561	510	hypothetical protein [Amblyomma maculatu	0.747	0.127	0.6	7e-14
157133750	510	nonsense-mediated mrna decay protein [Ae	0.712	0.121	0.641	3e-12
307202686	503	60S ribosomal export protein NMD3 [Harpe	0.793	0.137	0.52	3e-12
94468868	510	NMD protein [Aedes aegypti]	0.712	0.121	0.641	3e-12
312371222	502	hypothetical protein AND_22389 [Anophele	0.689	0.119	0.606	1e-11
391344979	507	PREDICTED: 60S ribosomal export protein	0.793	0.136	0.5	3e-11
241856628	508	NMD protein affecting ribosome stability	0.747	0.127	0.5	6e-11
91091920	503	PREDICTED: similar to nonsense-mediated	0.724	0.125	0.588	9e-11

>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus pulchellus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 5/70 (7%)

Query: 10  DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
           DT+S   DY +F+ DLEED  YRQNVNIYK   +I VD     T+DED DAPRITL+EML
Sbjct: 435 DTSSVARDYTDFLEDLEEDAAYRQNVNIYKDNDKIAVD-----TDDEDGDAPRITLQEML 489

Query: 70  DDLTIDDVDM 79
           DDL ++D  M
Sbjct: 490 DDLQLEDDPM 499

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 5/70 (7%)

Query: 12  ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD 71
           ++ ++DYNEF++DLEED   RQN+NI+K   +IPVD ++I     DP  PRITL EMLDD
Sbjct: 402 STTDDDYNEFLDDLEEDPALRQNINIFKDSNKIPVDTDEI-----DPSLPRITLAEMLDD 456

Query: 72  LTIDDVDMEE 81
           L I+DVDM E
Sbjct: 457 LAIEDVDMTE 466

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 5/70 (7%)

Query: 10  DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
           DT+S   DY +F+ DLEED  YRQNVNIYK   +I VD     T+DED DAPRITL+EML
Sbjct: 435 DTSSVARDYTDFLEDLEEDAGYRQNVNIYKDSDKIAVD-----TDDEDGDAPRITLQEML 489

Query: 70  DDLTIDDVDM 79
           DDL ++D  M
Sbjct: 490 DDLQLEDDPM 499

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti] gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 16  NDYNEFMNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTI 74
           NDYNEF+ DLEED   RQNVNI+K   +I PVD ND+     DP  PRITLEEMLDDL +
Sbjct: 446 NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVL 501

Query: 75  DDVDMEE 81
           DDV+M E
Sbjct: 502 DDVEMTE 508

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 6/75 (8%)

Query: 8   VPDTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLE 66
           V   ++ NN+YNEF+++LEED   RQN+NI++    +IPVD N+I     DP  P+ITLE
Sbjct: 433 VVSMSTENNEYNEFLDELEEDPELRQNINIFRDPRKQIPVDTNEI-----DPSIPQITLE 487

Query: 67  EMLDDLTIDDVDMEE 81
           EMLDDL ++DV+M E
Sbjct: 488 EMLDDLVLEDVEMSE 502

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 16  NDYNEFMNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTI 74
           NDYNEF+ DLEED   RQNVNI+K   +I PVD ND+     DP  PRITLEEMLDDL +
Sbjct: 446 NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVL 501

Query: 75  DDVDMEE 81
           DDV+M E
Sbjct: 502 DDVEMTE 508

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 6/66 (9%)

Query: 16  NDYNEFMNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
           NDYNEF+ DLEED   RQNVNI+K     ++PVD ND+    +DP  PRITLEEMLDDL 
Sbjct: 438 NDYNEFLEDLEEDPELRQNVNIFKDSKRQQMPVDTNDM----DDPSVPRITLEEMLDDLV 493

Query: 74  IDDVDM 79
           +DD +M
Sbjct: 494 LDDAEM 499

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus occidentalis]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 7/76 (9%)

Query: 10  DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
           D++S   D+NEF  DLEED   RQNVNIYK       D+  I  E E  DAP I+L+EML
Sbjct: 433 DSSSVGRDFNEFCEDLEEDPALRQNVNIYK-------DSEKIAVESEAGDAPHISLQEML 485

Query: 70  DDLTIDDVDMEEEVTS 85
           DD+T+DD  M++  T+
Sbjct: 486 DDMTLDDEAMDDADTA 501

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative [Ixodes scapularis] gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative [Ixodes scapularis]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)

Query: 10  DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
           +T+S   DY EF+ +LEED +YRQNVN+Y    ++ VD     T+DED + P+ITL+EML
Sbjct: 435 ETSSVARDYTEFLEELEEDAVYRQNVNVYLDREKLAVD-----TDDEDGELPKITLQEML 489

Query: 70  DDLTIDDVDM 79
           DDL ++D  M
Sbjct: 490 DDLCLEDDPM 499

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091920|ref|XP_967150.1| PREDICTED: similar to nonsense-mediated mrna decay protein [Tribolium castaneum] gi|270000793|gb|EEZ97240.1| hypothetical protein TcasGA2_TC011038 [Tribolium castaneum]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 15  NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
           N DYNEF++DLEED   RQN+NI+K    +IP+D+ D    D D + PRITL EMLDDL 
Sbjct: 439 NRDYNEFLDDLEEDPDLRQNINIFKDNTKQIPIDSGD----DVDENVPRITLAEMLDDLV 494

Query: 74  IDDVDMEE 81
           IDDV+M E
Sbjct: 495 IDDVEMSE 502

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
WB|WBGene00012030	513	T25G3.3 [Caenorhabditis elegan	0.873	0.148	0.481	2.7e-11
CGD|CAL0001704	520	NMD3 [Candida albicans (taxid:	0.758	0.126	0.459	2.6e-10
ZFIN|ZDB-GENE-050320-149	505	nmd3 "NMD3 homolog (S. cerevis	0.724	0.124	0.449	8.5e-10
SGD|S000001213	518	NMD3 "Protein involved in nucl	0.770	0.129	0.422	3.1e-09
UNIPROTKB|I3LDB7	507	NMD3 "Uncharacterized protein"	0.793	0.136	0.473	1e-08
UNIPROTKB|C9JA08	529	NMD3 "60S ribosomal export pro	0.712	0.117	0.485	1e-07
UNIPROTKB|Q96D46	503	NMD3 "60S ribosomal export pro	0.666	0.115	0.507	1.6e-07
RGD|1308468	503	Nmd3 "NMD3 homolog (S. cerevis	0.666	0.115	0.492	1.6e-07
UNIPROTKB|E1BTL9	504	NMD3 "Uncharacterized protein"	0.609	0.105	0.491	1.6e-07
POMBASE|SPAC16C9.03	498	nmd3 "export adaptor Nmd3 (pre	0.724	0.126	0.446	2e-07

WB|WBGene00012030 T25G3.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 40/83 (48%), Positives = 54/83 (65%)

Query:     6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDEDPDAPRI 63
             NIV  +TAS  +++  FM D+EED L R+ +NIYK   + P VD +D   ED  PDAP  
Sbjct:   429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPNVDGDD--AEDH-PDAP-- 483

Query:    64 TLEEMLDDLTIDDVDMEEEVTSD 86
             TL EMLDDL  DD +M+E  +++
Sbjct:   484 TLAEMLDDLKFDDEEMKEAESAE 506

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

CGD|CAL0001704 NMD3 [Candida albicans (taxid:5476)]

 Score = 155 (59.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query:    14 ANNDYNEFMNDLEEDVLYRQNVNIYKAG---PEIPVDANDINTEDEDPD--APRITLEEM 68
             A  DY  F+ +LEED   RQ +N+YKAG   P++  + +D+N EDED D  AP I ++E+
Sbjct:   446 AERDYELFLQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDEDEDDDEDAPEIGIDEL 505

Query:    69 LD---DLTIDDVDM 79
             LD   D+T+DD  M
Sbjct:   506 LDELDDMTLDDTPM 519

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IEA

ZFIN|ZDB-GENE-050320-149 nmd3 "NMD3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)

Query:    10 DTASANND--YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
             D A  +++  Y EF+ DLEED + R+N+NI++   +IPV+ +D  T+D+   APRI+L E
Sbjct:   429 DAADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESD--TDDDG--APRISLAE 484

Query:    68 MLDDLTIDD 76
             ML+DL++ D
Sbjct:   485 MLEDLSLSD 493

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

SGD|S000001213 NMD3 "Protein involved in nuclear export of the large ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 30/71 (42%), Positives = 49/71 (69%)

Query:    14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
             A  DY  F+ +LEED   RQ+VN+YK     +P + ++++ EDED DAP+I ++E+LD+L
Sbjct:   442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMD-EDEDEDAPQINIDELLDEL 500

Query:    73 TIDDVDMEEEV 83
               D++ +E+ V
Sbjct:   501 --DEMTLEDGV 509

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0043023 "ribosomal large subunit binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LDB7 NMD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 36/76 (47%), Positives = 47/76 (61%)

Query:    10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
             DT +    Y +F+ DLEED   R+NVNIY+  P IPV+++   T+DE   APRI+L EML
Sbjct:   432 DTDN-ERQYQDFLEDLEEDEAIRKNVNIYR-DPTIPVESD---TDDEG--APRISLAEML 484

Query:    70 DDLTIDDVDMEEEVTS 85
             +DL I      EE  S
Sbjct:   485 EDLHISQDATGEEARS 500

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|C9JA08 NMD3 "60S ribosomal export protein NMD3" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 33/68 (48%), Positives = 43/68 (63%)

Query:    18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
             Y +F+ DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I   
Sbjct:   439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQD 492

Query:    78 DMEEEVTS 85
                EE  S
Sbjct:   493 ATGEEAKS 500

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q96D46 NMD3 "60S ribosomal export protein NMD3" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query:    18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-D 76
             Y +F+ DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I  D
Sbjct:   439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQD 492

Query:    77 VDMEE 81
                EE
Sbjct:   493 ATGEE 497

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1308468 Nmd3 "NMD3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 32/65 (49%), Positives = 43/65 (66%)

Query:    18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-D 76
             Y +F+ DLEED   R+NVNIY+    +PV+++   T+DE   APRI+L EML+DL I  D
Sbjct:   439 YQDFLEDLEEDETIRKNVNIYRDST-VPVESD---TDDEG--APRISLAEMLEDLRISQD 492

Query:    77 VDMEE 81
                EE
Sbjct:   493 ATGEE 497

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1BTL9 NMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query:    18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
             Y +F+ DLEED   R+NVNIY+   +IPV+++   T+D+   APRI+L EML+DL I +
Sbjct:   439 YQDFLEDLEEDEAIRKNVNIYR-NADIPVESD---TDDDG--APRISLAEMLEDLHISE 491

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPAC16C9.03 nmd3 "export adaptor Nmd3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:    10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPE-IPVDANDINTEDE-DPDAPRITLEE 67
             D      DY  F+ +LEED   RQ VN+YKA  + I V   D++ EDE D D P+I+++E
Sbjct:   429 DIERQERDYELFLQNLEEDPELRQGVNLYKAPVKAIAVADTDMDEEDEVDEDIPQISVDE 488

Query:    68 MLDDL 72
             +LDD+
Sbjct:   489 LLDDV 493

GO:0000027 "ribosomal large subunit assembly" evidence=ISO

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08DS5	NMD3_BOVIN	No assigned EC number	0.5263	0.5862	0.1013	yes	N/A
Q6P2Z6	NMD3_XENTR	No assigned EC number	0.5087	0.5862	0.1011	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG2613|consensus	502		99.69
PF07862	49	Nif11: Nitrogen fixation protein of unknown functi	85.02

>KOG2613|consensus

Probab=99.69  E-value=2e-17  Score=134.24  Aligned_cols=74  Identities=32%  Similarity=0.526  Sum_probs=58.6

Q ss_pred             CCcchhhhhhHHHHHHHHhhhCHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHhhccCCCCCC---Cccchh
Q psy13019          7 IVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV---DMEEEV   83 (87)
Q Consensus         7 ~~~d~~~~e~DyE~FL~dLEED~ElR~~InLYK~~~~~~~~~~~~~~~~~d~d~P~I~LdELLDdl~i~dd---~~~e~~   83 (87)
                      .+.+.++.+++|+.||++||||++||++|||||++.+.+.     .+.++++++|+|+|+|||++|.+...   +.++++
T Consensus       424 ~~~~~~~~~~eY~~FledlEEd~elr~~vnlyrd~~~~~~-----~d~d~~ed~p~i~ldElLedl~~~~~e~~~~~edd  498 (502)
T KOG2613|consen  424 GKNESERTEKEYELFLEDLEEDPELRQGVNLYRDKEKPTE-----SDTDDAEDAPQITLDELLEDLKLSFEEDDEDGEDD  498 (502)
T ss_pred             ccccchhhHHHHHHHHHhhhcCHHHHhcceeeeccCCCCc-----cccccccCCCCCCHHHHHhhhhcchhhcccCCCcc
Confidence            3677888899999999999999999999999999987322     12233488999999999999977654   444554


Q ss_pred             hc
Q psy13019         84 TS   85 (87)
Q Consensus        84 ~~   85 (87)
                      ++
T Consensus       499 ~~  500 (502)
T KOG2613|consen  499 EA  500 (502)
T ss_pred             cc
Confidence            44

>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned []

Probab=85.02  E-value=1  Score=25.70  Aligned_cols=27  Identities=11%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             hHHHHHHHHhhhCHHHHHhcccccCCC
Q psy13019         16 NDYNEFMNDLEEDVLYRQNVNIYKAGP   42 (87)
Q Consensus        16 ~DyE~FL~dLEED~ElR~~InLYK~~~   42 (87)
                      .....||..+..||.||.+++-.+++.
T Consensus         4 ~~l~~Fl~~~~~d~~l~~~l~~~~~~~   30 (49)
T PF07862_consen    4 ESLKAFLEKVKSDPELREQLKACQNPE   30 (49)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence            467899999999999999998766543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00