Psyllid ID: psy1303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEcccEEEEcccEEEEEccccccEEEEEEEcccccccccEEEEEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
HcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHcc
Coil and Loop (DISEMBL)
GCGGTSTILTVHNCLYAGLinkfgtkkqketylpsfvdgtnvgcfgisepgsgsdAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAqadkskkhkgitafiipmdspglslgkkedklgirASSTCNVILedvkipldsvlgkegegfkvgltgIDCARIGMASQGIGIAQAAFDCAMEYAgkriafgapilklqavqlp
Flexible Loop (DISEMBL)
gcggtstiltvHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTArkesdhwvLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFiipmdspglslgKKEDKLGIRASStcnviledvkipldsvlgkeGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Low Complexity Region (SEG)
GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Disordered region (IsUnstruct)
*****STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGIS******************SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL****DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQA****
Disordered Region (DISOPRED)
*CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Disordered Region (DISEMBL)
GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Disordered Region (DISPRO)
GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
P15651	412	Short-chain specific acyl	yes	N/A	0.995	0.497	0.565	4e-68
P16219	412	Short-chain specific acyl	yes	N/A	0.995	0.497	0.570	4e-68
Q5RAS0	412	Short-chain specific acyl	yes	N/A	0.995	0.497	0.570	5e-68
Q07417	412	Short-chain specific acyl	yes	N/A	0.995	0.497	0.560	2e-67
Q3ZBF6	412	Short-chain specific acyl	yes	N/A	0.995	0.497	0.585	1e-64
P79273	413	Short-chain specific acyl	yes	N/A	0.995	0.496	0.546	2e-61
Q54RR5	413	Probable short/branched c	yes	N/A	0.966	0.481	0.477	2e-47
P52042	379	Acyl-CoA dehydrogenase, s	yes	N/A	0.980	0.532	0.450	6e-47
Q06319	383	Acyl-CoA dehydrogenase, s	yes	N/A	0.980	0.527	0.443	4e-46
P45867	379	Acyl-CoA dehydrogenase OS	yes	N/A	0.980	0.532	0.445	5e-44

>sp|P15651|ACADS_RAT Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2

 Score =  257 bits (656), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 156/205 (76%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR+E D WVLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ 
Sbjct: 228 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA  R AFGAP+ KLQ +Q 
Sbjct: 288 DCAVKYAENRHAFGAPLTKLQNIQF 312

Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 1

>sp|P16219|ACADS_HUMAN Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1

 Score =  257 bits (656), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 152/205 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct: 228 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R+AFGAP+ KLQ +Q 
Sbjct: 288 DCAVNYAENRMAFGAPLTKLQVIQF 312

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q5RAS0|ACADS_PONAB Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1

 Score =  256 bits (655), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 152/205 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct: 228 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R+AFGAP+ KLQ +Q 
Sbjct: 288 DCAVNYAENRMAFGAPLTKLQVIQF 312

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q07417|ACADS_MOUSE Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=2

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 155/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
            C  T  I++V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    
Sbjct: 108 ACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR+E D WVLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ 
Sbjct: 228 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA  R AFGAP+ KLQ +Q 
Sbjct: 288 DCAVKYAENRNAFGAPLTKLQNIQF 312

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q3ZBF6|ACADS_BOVIN Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 153/205 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFGTK+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSDAGAAA 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR + D WVL+GTK+WITN +EA A V  A  D+S  +KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 228 EDKLGIRASSTANLIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R AFGAP+ KLQA+Q 
Sbjct: 288 DCAVTYAENRSAFGAPLTKLQAIQF 312

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|P79273|ACADS_PIG Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 151/205 (73%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  VGCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAA 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTA+ + D WVL+GTK+WITN +EA A V  A  D+S ++KGI+AF++PM + GL+LGKK
Sbjct: 168 TTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTAGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+AS+ +GI+QAA 
Sbjct: 228 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R AFG P+ KLQ +Q 
Sbjct: 288 DCAVNYAENRRAFGVPLTKLQGIQF 312

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q54RR5|ACDSB_DICDI Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 132/201 (65%), Gaps = 2/201 (0%)

Query: 6   STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
           S I+ V N L    IN++G+ +Q+E YL      T VG F +SE GSGSDA  + T A +
Sbjct: 114 SVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNT-VGSFCLSESGSGSDAFALATRAVR 172

Query: 66  ESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKL 124
           +SD  +VLNGTK WITN  EA  F+ +A  D S+ +KGITAFI+  ++PGL +GKKEDKL
Sbjct: 173 QSDGTFVLNGTKQWITNAKEAGVFIVMANVDPSQGYKGITAFIVESNNPGLRIGKKEDKL 232

Query: 125 GIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAM 184
           GIRASSTC VIL++  +    +LG+ G G+K+ + G++  RIG+A+Q +G+AQ  FD  +
Sbjct: 233 GIRASSTCEVILDNCVVKPTDILGELGRGYKIAIEGLNEGRIGIAAQMLGLAQGVFDSTI 292

Query: 185 EYAGKRIAFGAPILKLQAVQL 205
            Y  +R  FG PI   Q +Q 
Sbjct: 293 PYLMERKQFGKPIATFQGMQF 313

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  187 bits (474), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 132/202 (65%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
           CG T  IL+ H  L A LIN+ GT++QK+ YL     G  +G +G++EP +G+D+    T
Sbjct: 80  CGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQT 139

Query: 62  TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
            A  E DH+V+NG+K +ITNG  A  FV  A  D++K  KGI+AFII     G S+GK E
Sbjct: 140 VAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKGFKGFSIGKVE 199

Query: 122 DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFD 181
            KLGIRASST  ++ ED+ +P+++++GKEG+GF + +  +D  RIG+A+Q +GIA+ AF+
Sbjct: 200 QKLGIRASSTTELVFEDMIVPVENMIGKEGKGFPIAMKTLDGGRIGIAAQALGIAEGAFN 259

Query: 182 CAMEYAGKRIAFGAPILKLQAV 203
            A  Y  +R  FG  + K Q +
Sbjct: 260 EARAYMKERKQFGRSLDKFQGL 281

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1

 Score =  184 bits (466), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 135/203 (66%), Gaps = 1/203 (0%)

Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G +  L+    L A  I +FGT+ QKE +L   V+GT +G FG++EP +G+DA+   T A
Sbjct: 85  GVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIA 144

Query: 64  RKESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKED 122
            K  D  + LNG+K +ITNG  A  ++  A  DKSK + GITAFI+   +PG + GKKED
Sbjct: 145 TKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKED 204

Query: 123 KLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDC 182
           K+GI  S T  ++ +DVK+P +++LG+EG+GFK+ +  +D  RIG+A+Q +GIA+AA   
Sbjct: 205 KMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALAD 264

Query: 183 AMEYAGKRIAFGAPILKLQAVQL 205
           A+EY+ +R+ FG P+ K Q++  
Sbjct: 265 AVEYSKQRVQFGKPLCKFQSISF 287

Has an optimum specificity for 4-carbon length fatty acyl-CoAs.

Megasphaera elsdenii (taxid: 907)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1

 Score =  177 bits (448), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 123/202 (60%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
           C  T   L+ H  L +  +  FGT++QK  YL     G  +G F ++E GSGSDA +M T
Sbjct: 80  CASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKT 139

Query: 62  TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
           TA +  D +VLNG+K +ITNG  A  ++  A  D  KK KG+TAFI+  D  G   GKKE
Sbjct: 140 TAERIGDDYVLNGSKVFITNGGVADIYIVFAVTDPEKKKKGVTAFIVEKDFEGFFTGKKE 199

Query: 122 DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFD 181
            KLGIR+S T  ++ ED  +P    LG+EGEGFK+ +  +D  R G+A+Q +GIAQ A D
Sbjct: 200 KKLGIRSSPTTEIMFEDCVVPASKRLGEEGEGFKIAMKTLDGGRNGIAAQAVGIAQGALD 259

Query: 182 CAMEYAGKRIAFGAPILKLQAV 203
            A++YA +R  FG  I + Q +
Sbjct: 260 AALQYAKERKQFGKSIAEQQGI 281

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
193652742	403	PREDICTED: short-chain specific acyl-CoA	0.985	0.503	0.586	3e-71
149469715	350	PREDICTED: short-chain specific acyl-CoA	0.995	0.585	0.6	6e-69
432884639	405	PREDICTED: short-chain specific acyl-CoA	0.995	0.506	0.6	6e-69
403281503	412	PREDICTED: short-chain specific acyl-CoA	0.995	0.497	0.585	1e-67
347966858	404	AGAP001951-PA [Anopheles gambiae str. PE	0.990	0.504	0.583	5e-67
226372490	409	Short-chain specific acyl-CoA dehydrogen	0.995	0.501	0.6	5e-67
111334	412	acyl-CoA dehydrogenase (EC 1.3.99.3) pre	0.995	0.497	0.575	5e-67
301787025	414	PREDICTED: short-chain specific acyl-CoA	0.995	0.495	0.585	7e-67
281347553	396	hypothetical protein PANDA_018993 [Ailur	0.995	0.517	0.585	8e-67
327282658	410	PREDICTED: short-chain specific acyl-CoA	0.995	0.5	0.575	8e-67

>gi|193652742|ref|XP_001942523.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform 3 [Acyrthosiphon pisum] gi|328705315|ref|XP_003242761.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 165/203 (81%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
           CGGT +I+++HN LYAG+IN+ GT +QK  +LP F+    VGCF +SEPGSGSDAANM T
Sbjct: 97  CGGTGSIVSIHNALYAGIINRVGTPEQKLQFLPDFISRGIVGCFALSEPGSGSDAANMHT 156

Query: 62  TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
            A++E DHW+LNGTK+W+TNG E  A + +A++D  K H G++AFI+P ++PGL+ GK++
Sbjct: 157 IAKREGDHWILNGTKAWVTNGIEGGAIIVMARSDIFKGHNGVSAFIVPTNTPGLTKGKRD 216

Query: 122 DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFD 181
           DKLGIRA+S+CN+IL++V +P +++LG EG+GFK+ ++GID ARIG+ASQ +GI+QAA D
Sbjct: 217 DKLGIRAASSCNIILDNVIVPAENMLGNEGDGFKIAMSGIDLARIGIASQALGISQAAMD 276

Query: 182 CAMEYAGKRIAFGAPILKLQAVQ 204
           CA++YAG R AFG  I+KL AVQ
Sbjct: 277 CAIDYAGNRTAFGNAIIKLSAVQ 299

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149469715|ref|XP_001519538.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Ornithorhynchus anatinus]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 154/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFGTK+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 46  GCASTGVIMSVNNSLYLGPILKFGTKEQKQQWITPFTSGDKIGCFALSEPGNGSDAGAAS 105

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN ++A A V  A  DK+ KHKGITAF++PM +PGLSLGKK
Sbjct: 106 TTARAEGDSWVLNGTKAWITNAWDASATVVFATTDKALKHKGITAFLVPMPTPGLSLGKK 165

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP    LG+ G+GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 166 EDKLGIRASSTANLIFEDCRIPRHHALGEPGQGFKIAMQTLDMGRIGIASQALGIAQAAL 225

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA KR+AFGAP+ KLQ +Q 
Sbjct: 226 DCAVDYAEKRMAFGAPLTKLQGIQF 250

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432884639|ref|XP_004074518.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Oryzias latipes]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 155/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  +++V+N LY G + KFGT++QK+ ++  F  G  VGCF +SEPG+GSDA    
Sbjct: 101 GCASTGVVVSVNNSLYIGPVLKFGTEEQKKKWITPFTTGEKVGCFALSEPGNGSDAGAAS 160

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR+E D WVLNGTK+WITN ++A A V  A  DK  KHKGI+AF++PM  PGLSLGKK
Sbjct: 161 TTARQEGDEWVLNGTKAWITNSWDASATVVFATTDKKLKHKGISAFLVPMPHPGLSLGKK 220

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+ILE+ ++PLDS+LG  G GFK+ +  +D  RIG+A+Q +GIAQA+ 
Sbjct: 221 EDKLGIRASSTANIILEECRVPLDSMLGPRGAGFKIAMQTLDSGRIGIAAQALGIAQASL 280

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA +YA KR AFGAPI KLQAVQ 
Sbjct: 281 DCAADYAHKRTAFGAPIGKLQAVQF 305

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403281503|ref|XP_003932225.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Saimiri boliviensis boliviensis]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 154/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGIIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTARAEGDSWVLNGTKAWITNSWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 228 EDKLGIRASSTANLIFEDCRIPKDSILGEPGMGFKIAMQSLDMGRIGVASQALGIAQAAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R+AFGAPI KLQ +Q 
Sbjct: 288 DCAVNYAETRMAFGAPITKLQVIQF 312

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|347966858|ref|XP_321112.5| AGAP001951-PA [Anopheles gambiae str. PEST] gi|333469867|gb|EAA01272.5| AGAP001951-PA [Anopheles gambiae str. PEST]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 119/204 (58%), Positives = 153/204 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC     I++V+N LY G +  FG ++Q++ Y+  + DG+ VGCF +SEPG+GSDA    
Sbjct: 100 GCASAGVIMSVNNSLYLGPLTHFGNEQQQQKYVTEYTDGSRVGCFALSEPGNGSDAGAAS 159

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTA  + DHWVLNGTK WITNGYEA A V  A  DKS KHKGI+AFI+P ++PG SLGKK
Sbjct: 160 TTATLKGDHWVLNGTKCWITNGYEAGAAVVFATTDKSLKHKGISAFIVPKETPGFSLGKK 219

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SSTC++I ED  IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ 
Sbjct: 220 EDKLGIRGSSTCSLIFEDCAIPRENLLGEPGFGFKIAMQTLDAGRIGIASQALGIAQASL 279

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           +CA++YA KRIAFG PI KLQA+Q
Sbjct: 280 ECAVDYANKRIAFGKPIAKLQAIQ 303

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226372490|gb|ACO51870.1| Short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor [Rana catesbeiana]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 152/205 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I K  T+ QK  ++  +  G  +GCF +SEPG+GSDA    
Sbjct: 105 GCASTGVIMSVNNSLYLGPILKNATEDQKRKWITPYCSGDKIGCFSLSEPGNGSDAGAAS 164

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T AR + DHWVLNGTKSWITN ++A A V  A  DKS KHKGI+AF++ M SPGLSLGKK
Sbjct: 165 TVARLDGDHWVLNGTKSWITNAWDASATVVFATTDKSLKHKGISAFLVEMPSPGLSLGKK 224

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP +++LGK G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 225 EDKLGIRASSTANLIFEDCRIPRENLLGKPGMGFKIAMQTLDAGRIGIASQALGIAQAAL 284

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA KRIAFGAPI KLQA+Q 
Sbjct: 285 DCAVDYAEKRIAFGAPITKLQAIQF 309

Source: Rana catesbeiana

Species: Rana catesbeiana

Genus: Rana

Family: Ranidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|111334|pir||B30605 acyl-CoA dehydrogenase (EC 1.3.99.3) precursor, short-chain-specific - rat

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 153/205 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 108 GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 167

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++KGI+AF++PM +PGL+LGKK
Sbjct: 168 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKK 227

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct: 228 EDKLGIRASSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 287

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R+AFGAP+ KLQ +Q 
Sbjct: 288 DCAVNYAENRMAFGAPLTKLQVIQF 312

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301787025|ref|XP_002928931.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Ailuropoda melanoleuca]

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 154/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 110 GCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTGGDKIGCFALSEPGNGSDAGATS 169

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D+S ++KGI+AF++PM +PGL+LGKK
Sbjct: 170 TTARAEGDSWVLNGTKAWITNSWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKK 229

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 230 EDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAAL 289

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R AFGAP+ KLQ++Q 
Sbjct: 290 DCAVNYAENRRAFGAPLTKLQSIQF 314

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281347553|gb|EFB23137.1| hypothetical protein PANDA_018993 [Ailuropoda melanoleuca]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 154/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 93  GCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTGGDKIGCFALSEPGNGSDAGATS 152

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D+S ++KGI+AF++PM +PGL+LGKK
Sbjct: 153 TTARAEGDSWVLNGTKAWITNSWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKK 212

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 213 EDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAAL 272

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R AFGAP+ KLQ++Q 
Sbjct: 273 DCAVNYAENRRAFGAPLTKLQSIQF 297

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327282658|ref|XP_003226059.1| PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Anolis carolinensis]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 154/205 (75%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G + K+G+++QK  ++  F +G  +GCF +SEPG+GSDA    
Sbjct: 106 GCASTGVIMSVNNTLYLGPVLKYGSEEQKHKWITPFTNGDKIGCFALSEPGNGSDAGAAS 165

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T AR   D WVLNGTK+WITN ++A A V  A  DK  KHKGI+AF++PM +PGLSLGKK
Sbjct: 166 TVARLVGDEWVLNGTKAWITNAWDAAATVVFATTDKGLKHKGISAFLVPMPTPGLSLGKK 225

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDK+GIRASST N+I ED +IP D++LG+EG GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct: 226 EDKMGIRASSTANLIFEDCRIPKDNLLGEEGMGFKIAMQTLDSGRIGIASQALGIAQAAL 285

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA KR+AFGAPI K QA+Q 
Sbjct: 286 DCAVDYAEKRMAFGAPITKFQAIQF 310

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
ZFIN|ZDB-GENE-040808-64	424	acads "acyl-Coenzyme A dehydro	0.990	0.481	0.593	2e-63
UNIPROTKB|F1MVL2	412	ACADS "Short-chain-specific ac	0.990	0.495	0.588	4.2e-63
UNIPROTKB|Q3ZBF6	412	ACADS "Short-chain specific ac	0.990	0.495	0.588	6.9e-63
UNIPROTKB|P16219	412	ACADS "Short-chain specific ac	0.990	0.495	0.573	8.8e-63
RGD|620514	412	Acads "acyl-CoA dehydrogenase,	0.990	0.495	0.568	2.3e-62
UNIPROTKB|Q5ZL56	416	ACADS "Uncharacterized protein	0.990	0.490	0.583	6.2e-62
MGI|MGI:87868	412	Acads "acyl-Coenzyme A dehydro	0.985	0.492	0.566	1.3e-61
UNIPROTKB|F1PLG8	414	ACADS "Uncharacterized protein	0.990	0.492	0.563	2.7e-61
UNIPROTKB|F1PZX6	373	ACADS "Uncharacterized protein	0.990	0.546	0.563	2.7e-61
UNIPROTKB|F1RJH2	412	ACADS "Short-chain-specific ac	0.990	0.495	0.563	5.5e-61

ZFIN|ZDB-GENE-040808-64 acads "acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain" [Danio rerio (taxid:7955)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 121/204 (59%), Positives = 155/204 (75%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+++QK+ ++  F  G  VGCF +SEPG+GSDA    
Sbjct:   120 GCASTGVIVSVNNSLYIGPILKFGSEEQKKQWITPFTTGEKVGCFALSEPGNGSDAGAAS 179

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             T A++E + WVLNGTK+WITN ++A A V  A  DKS KHKGI+AF++PM  PGLSLGKK
Sbjct:   180 TLAQQEGNEWVLNGTKAWITNSWDASATVVFATTDKSLKHKGISAFLVPMPHPGLSLGKK 239

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+ILED +IPL ++LG+ G GFK+ +  +D  R+G+A+Q +GIAQAA 
Sbjct:   240 EDKLGIRASSTANIILEDCRIPLGNMLGERGMGFKIAMQTLDSGRLGIAAQALGIAQAAL 299

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA +YA KR AFGAPI KLQA+Q
Sbjct:   300 DCAADYAHKRTAFGAPIGKLQAIQ 323

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1MVL2 ACADS "Short-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 120/204 (58%), Positives = 153/204 (75%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFGTK+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct:   108 GCASTGVIMSVNNSLYLGPILKFGTKEQKQRWVAPFTSGDKIGCFALSEPGNGSDAGAAA 167

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTAR + D WVL+GTK+WITN +EA A V  A  D+S  +KGI+AF++PM +PGL+LGKK
Sbjct:   168 TTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFLVPMPTPGLTLGKK 227

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct:   228 EDKLGIRASSTANLIFEDCRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAAL 287

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R AFGAP+ KLQA+Q
Sbjct:   288 DCAVTYAENRSAFGAPLTKLQAIQ 311

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|Q3ZBF6 ACADS "Short-chain specific acyl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 120/204 (58%), Positives = 153/204 (75%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFGTK+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct:   108 GCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSDAGAAA 167

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTAR + D WVL+GTK+WITN +EA A V  A  D+S  +KGI+AF++PM +PGL+LGKK
Sbjct:   168 TTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFLVPMPTPGLTLGKK 227

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct:   228 EDKLGIRASSTANLIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAAL 287

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R AFGAP+ KLQA+Q
Sbjct:   288 DCAVTYAENRSAFGAPLTKLQAIQ 311

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004085 "butyryl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|P16219 ACADS "Short-chain specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/204 (57%), Positives = 152/204 (74%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct:   108 GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 167

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++KGI+AF++PM +PGL+LGKK
Sbjct:   168 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKK 227

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct:   228 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 287

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R+AFGAP+ KLQ +Q
Sbjct:   288 DCAVNYAENRMAFGAPLTKLQVIQ 311

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0004085 "butyryl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0046359 "butyrate catabolic process" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|620514 Acads "acyl-CoA dehydrogenase, C-2 to C-3 short chain" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 116/204 (56%), Positives = 156/204 (76%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    
Sbjct:   108 GCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAS 167

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTAR+E D WVLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKK
Sbjct:   168 TTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKK 227

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ 
Sbjct:   228 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 287

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA++YA  R AFGAP+ KLQ +Q
Sbjct:   288 DCAVKYAENRHAFGAPLTKLQNIQ 311

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA;NAS;IDA

GO:0004085 "butyryl-CoA dehydrogenase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IDA

GO:0042594 "response to starvation" evidence=IEP

GO:0046359 "butyrate catabolic process" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

UNIPROTKB|Q5ZL56 ACADS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 119/204 (58%), Positives = 152/204 (74%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I +V+N LY G I KFG+++QK  ++  F  G  +GCF +SEPG+GSDA    
Sbjct:   112 GCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAAS 171

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             T AR + D WVLNGTK+WITN ++A A V  A  DKS KHKGI+AF++PM + GLSLGKK
Sbjct:   172 TVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTAGLSLGKK 231

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP  ++LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct:   232 EDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDGGRIGIASQALGIAQAAL 291

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA++YA KR+AFG+PI KLQA+Q
Sbjct:   292 DCAVDYAEKRMAFGSPITKLQAIQ 315

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:87868 Acads "acyl-Coenzyme A dehydrogenase, short chain" [Mus musculus (taxid:10090)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 115/203 (56%), Positives = 155/203 (76%)

Query:     2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
             C  T  I++V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    T
Sbjct:   109 CASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAST 168

Query:    62 TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
             TAR+E D WVLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKKE
Sbjct:   169 TAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKE 228

Query:   122 DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFD 181
             DKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ D
Sbjct:   229 DKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLD 288

Query:   182 CAMEYAGKRIAFGAPILKLQAVQ 204
             CA++YA  R AFGAP+ KLQ +Q
Sbjct:   289 CAVKYAENRNAFGAPLTKLQNIQ 311

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISO

GO:0004085 "butyryl-CoA dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISO

GO:0046359 "butyrate catabolic process" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1PLG8 ACADS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 115/204 (56%), Positives = 153/204 (75%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct:   110 GCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKIGCFALSEPGNGSDAGAAS 169

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTA+ + D W+LNGTK+WITN +EA A V  A  D+S ++KGI+AF++PM + GL+LGKK
Sbjct:   170 TTAQADGDAWILNGTKAWITNSWEASAAVVFASTDRSLQNKGISAFLVPMPTSGLTLGKK 229

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+A+Q +GIAQAA 
Sbjct:   230 EDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDMGRIGIAAQALGIAQAAL 289

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R AFGAP+ KLQ++Q
Sbjct:   290 DCAVNYAENRRAFGAPLTKLQSIQ 313

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PZX6 ACADS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 115/204 (56%), Positives = 153/204 (75%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct:    69 GCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKIGCFALSEPGNGSDAGAAS 128

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTA+ + D W+LNGTK+WITN +EA A V  A  D+S ++KGI+AF++PM + GL+LGKK
Sbjct:   129 TTAQADGDAWILNGTKAWITNSWEASAAVVFASTDRSLQNKGISAFLVPMPTSGLTLGKK 188

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+A+Q +GIAQAA 
Sbjct:   189 EDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDMGRIGIAAQALGIAQAAL 248

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R AFGAP+ KLQ++Q
Sbjct:   249 DCAVNYAENRRAFGAPLTKLQSIQ 272

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|F1RJH2 ACADS "Short-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 115/204 (56%), Positives = 152/204 (74%)

Query:     1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  VGCF +SEPG+GSDA    
Sbjct:   108 GCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAA 167

Query:    61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             TTA+ + D WVL+GTK+WITN +EA A V  A  D+S ++KGI+AF++PM +PGL+LGKK
Sbjct:   168 TTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKK 227

Query:   121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQAA 
Sbjct:   228 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAAL 287

Query:   181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             DCA+ YA  R AFG P+ KLQ +Q
Sbjct:   288 DCAVNYAENRRAFGVPLTKLQGIQ 311

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAS0	ACADS_PONAB	1, ., 3, ., 8, ., 1	0.5707	0.9951	0.4975	yes	N/A
P16219	ACADS_HUMAN	1, ., 3, ., 8, ., 1	0.5707	0.9951	0.4975	yes	N/A
P79273	ACADS_PIG	1, ., 3, ., 8, ., 1	0.5463	0.9951	0.4963	yes	N/A
Q3ZBF6	ACADS_BOVIN	1, ., 3, ., 8, ., 1	0.5853	0.9951	0.4975	yes	N/A
Q07417	ACADS_MOUSE	1, ., 3, ., 8, ., 1	0.5609	0.9951	0.4975	yes	N/A
P15651	ACADS_RAT	1, ., 3, ., 8, ., 1	0.5658	0.9951	0.4975	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	206
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	1e-102
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	9e-75
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	2e-69
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-60
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	2e-59
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	4e-53
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	7e-50
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	7e-49
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	3e-48
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	2e-45
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	3e-41
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	2e-39
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	6e-35
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	3e-34
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	4e-29
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	2e-28
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	5e-28
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	1e-24
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	5e-24
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	8e-20
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	2e-19
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	6e-19
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	8e-18
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	1e-17
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	3e-13
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	8e-13
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	2e-12
PLN02876	822	PLN02876, PLN02876, acyl-CoA dehydrogenase	2e-11
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	2e-10
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	3e-10
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	1e-09
PRK11561	538	PRK11561, PRK11561, isovaleryl CoA dehydrogenase;	2e-09
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	7e-08
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	1e-06
PLN02312	680	PLN02312, PLN02312, acyl-CoA oxidase	3e-06
PLN02443	664	PLN02443, PLN02443, acyl-coenzyme A oxidase	8e-05
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	0.001
pfam08028	134	pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase,	0.003

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  299 bits (767), Expect = e-102
 Identities = 109/204 (53%), Positives = 147/204 (72%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                + I++VHN L A  I KFGT++QK+ YLP    G  +G F +SEPG+GSDAA + 
Sbjct: 73  VDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALK 132

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTA+K+ D +VLNG+K WITNG EA  ++  A  D SK ++GITAFI+  D+PGLS+GKK
Sbjct: 133 TTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKK 192

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SST  +I EDV++P +++LG+EGEGFK+ +  +D  RIG+A+Q +GIAQAA 
Sbjct: 193 EDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAAL 252

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D A++YA +R  FG PI   Q +Q
Sbjct: 253 DAAVDYAKERKQFGKPIADFQGIQ 276

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  227 bits (582), Expect = 9e-75
 Identities = 82/189 (43%), Positives = 134/189 (70%), Gaps = 1/189 (0%)

Query: 17  AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTK 76
           A L+  +GT++QKE YLP    G  +  F ++EPG+GSD A + TTARK+ D +VLNG K
Sbjct: 45  AALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRK 104

Query: 77  SWITNGYEAKAFVCIAQ-ADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVI 135
            +I+NG +A  F+ +A+  ++   H+GI+AF++P D+PG+++G+  DK+G+R S T  ++
Sbjct: 105 IFISNGGDADLFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELV 164

Query: 136 LEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA 195
            +DV++P D++LG+EG GF++ + G++  R+ +A+  +G A+AA D A+EYA +R  FG 
Sbjct: 165 FDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK 224

Query: 196 PILKLQAVQ 204
           P+ + QAVQ
Sbjct: 225 PLAEFQAVQ 233

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  216 bits (552), Expect = 2e-69
 Identities = 84/210 (40%), Positives = 133/210 (63%), Gaps = 6/210 (2%)

Query: 1   GCGGTSTILTVHN---CLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAA 57
              G +  L + +      A  I +FGT++QK  YLP    G  +G F ++EPG+GSD A
Sbjct: 82  ADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLA 141

Query: 58  NMLTT-ARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKS-KKHKGITAFIIPMD-SPG 114
           ++ TT A ++   +VLNG K WI+N   A   + +A+ D +  KHKGI+ F++P D +PG
Sbjct: 142 SLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPG 201

Query: 115 LSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIG 174
           +S+G    K+G+R S+T  V  +DV++P +++LG+EG+GFK+ +  ++  R+G+A+Q +G
Sbjct: 202 VSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALG 261

Query: 175 IAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           IA+AA + A+ YA +R  FG PI   Q VQ
Sbjct: 262 IAEAALEEAVAYARERKQFGRPIADFQLVQ 291

Length = 393

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  193 bits (492), Expect = 1e-60
 Identities = 85/193 (44%), Positives = 119/193 (61%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           H+ L    I + G+  QKE YLP  + G ++G   +SEP +GSD  +M   A K+ D +V
Sbjct: 87  HSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYV 146

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
           LNG+K WITNG +A   V  A+ D S    GITAFI+    PG S  +K DKLG+R S+T
Sbjct: 147 LNGSKMWITNGPDADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNT 206

Query: 132 CNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRI 191
           C ++ ED ++P +++LG E +G  V ++G+D  R+ +A   IGI QAA D A+ YA +R 
Sbjct: 207 CELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRK 266

Query: 192 AFGAPILKLQAVQ 204
            FG PI + Q VQ
Sbjct: 267 QFGQPIGEFQLVQ 279

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  190 bits (484), Expect = 2e-59
 Identities = 79/204 (38%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T+  +++HN + A +I+ FG  +Q+E +LP       +  + ++EPGSGSDAA + 
Sbjct: 75  GCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALR 133

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A +E DH+VLNG+K++I+   ++  +V +A+    +  KGI+ F++   +PGLS G  
Sbjct: 134 TRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTG-GEGPKGISCFVVEKGTPGLSFGAN 192

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E K+G  A  T  VI ED ++P+++ LG EG+GF + + G++  R+ +AS  +G AQAA 
Sbjct: 193 EKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAAL 252

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D A  Y  +R  FG P+   QA+Q
Sbjct: 253 DLARAYLEERKQFGKPLADFQALQ 276

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  174 bits (444), Expect = 4e-53
 Identities = 87/209 (41%), Positives = 118/209 (56%), Gaps = 8/209 (3%)

Query: 3   GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTT 62
            G S  L  H  +    I  FGT+ QKE YLP    G  +  F ++EP SGSDAA++ TT
Sbjct: 100 LGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTT 159

Query: 63  ARKESD--HWVLNGTKSWITNGYEAKAFVCIAQ-----ADKSKKHKGITAFIIPMDSPGL 115
           A    D  H+VLNG+K WITNG  A  F   A+     A  S K K ITAFI+     G+
Sbjct: 160 AVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDK-ITAFIVERSFGGV 218

Query: 116 SLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGI 175
           + G  E K+GI+ S+T  V  EDVKIP+++VLG+ G+GFKV +  ++  R GM +  IG 
Sbjct: 219 TNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGT 278

Query: 176 AQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
            +   + A++YA  R  FG  I +   +Q
Sbjct: 279 MKRCIEKAVDYANNRKQFGKKIHEFGLIQ 307

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  165 bits (419), Expect = 7e-50
 Identities = 68/203 (33%), Positives = 120/203 (59%), Gaps = 1/203 (0%)

Query: 3   GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTT 62
           GG+   L++H  + +  I + G+ +QKE  LP  V G  +G   ++EPG+GSD   + TT
Sbjct: 74  GGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTT 133

Query: 63  ARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD-KSKKHKGITAFIIPMDSPGLSLGKKE 121
           ARK+ DH+VLNG+K++ITNG  A   + +A+   +++   GI+ F++   +PG S G+K 
Sbjct: 134 ARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKL 193

Query: 122 DKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFD 181
            K+G +A  T  +  +D ++P +++LG+E +GF   +  +   R+ +A+  +  A+   +
Sbjct: 194 KKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLE 253

Query: 182 CAMEYAGKRIAFGAPILKLQAVQ 204
               Y  +R AFG  + +LQ V+
Sbjct: 254 ETRNYVKQRKAFGKTLAQLQVVR 276

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  163 bits (414), Expect = 7e-49
 Identities = 72/201 (35%), Positives = 112/201 (55%), Gaps = 4/201 (1%)

Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  + ++V + L    I  FG+++QK+ YLP    G  +GCFG++EP  GSD   M T A
Sbjct: 89  GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRA 148

Query: 64  RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
           RK+   + LNG+K+WITN   A  FV  A+ D++ K +G   FI+     GLS  K + K
Sbjct: 149 RKDGGGYKLNGSKTWITNSPIADVFVVWARNDETGKIRG---FILERGMKGLSAPKIQGK 205

Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
             +RAS T  +++++V +P +++L    EG +     ++ AR G+A   +G A+  +  A
Sbjct: 206 FSLRASITGEIVMDNVFVPEENLL-PGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHTA 264

Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
            +Y   R  FG P+   Q VQ
Sbjct: 265 RQYVLDRKQFGRPLAAFQLVQ 285

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score =  161 bits (410), Expect = 3e-48
 Identities = 80/193 (41%), Positives = 114/193 (59%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           H+ L    + + GT  QKE YLP  + G +VG   +SEP SGSD  +M   A +    +V
Sbjct: 113 HSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYV 172

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
           LNG K W TNG  A+  V  A+ D +   KGITAFII    PG S  +K DKLG+R S T
Sbjct: 173 LNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 232

Query: 132 CNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRI 191
           C ++ E+  +P ++VLG+EG+G  V ++G+D  R+ +A+  +G+ QA  D  + Y  +R 
Sbjct: 233 CELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQRE 292

Query: 192 AFGAPILKLQAVQ 204
            FG PI + Q +Q
Sbjct: 293 QFGRPIGEFQFIQ 305

Length = 404

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  154 bits (390), Expect = 2e-45
 Identities = 76/208 (36%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +  ++     +I   G  +QK+ YL    +   +  + ++EPG+GSD A + 
Sbjct: 75  GCTGVQTAIEANSLGQMPVIIS-GNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 133

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K    K  T FI+  D+PG+  
Sbjct: 134 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQP 193

Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  +  EDV++P ++VL  EG GFK+ +   D  R  +A+  +G+AQ
Sbjct: 194 GRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQ 253

Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  I + QAV  
Sbjct: 254 RALDEATKYALERKTFGKLIAEHQAVSF 281

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score =  143 bits (363), Expect = 3e-41
 Identities = 74/199 (37%), Positives = 118/199 (59%), Gaps = 12/199 (6%)

Query: 7   TILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE 66
           ++L V+N  Y+       +  Q+  +LP  + G +VG  G+SEPG+G+D   M TTA+K+
Sbjct: 123 SMLFVNNFYYSA------SPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKD 176

Query: 67  SD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
           S+ ++VLNG+K WITNG  A  F+  A+ D       ITAF++   + G + G K DK G
Sbjct: 177 SNGNYVLNGSKIWITNGTVADVFLIYAKVDGK-----ITAFVVERGTKGFTQGPKIDKCG 231

Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
           +RAS  C +  EDV +P +++LG+EG+G    +  ++  R+ +A+  +GIA+ + +    
Sbjct: 232 MRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTS 291

Query: 186 YAGKRIAFGAPILKLQAVQ 204
           YA +R AFG PI     +Q
Sbjct: 292 YASERKAFGKPISNFGQIQ 310

Length = 410

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score =  138 bits (349), Expect = 2e-39
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKE-TYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           CG  + ++T   C+++  + +FG+ +Q   T   +   G       ++EPG+GSD  +  
Sbjct: 80  CGAPAFLITNGQCIHS--MRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSAT 137

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSK-KHKGITAFIIPMDSPGLSLGK 119
           TT  +++    LNG K++IT   E    + +A+  + K   K  T + +    PG+ +  
Sbjct: 138 TTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINP 197

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
              K+G    STC V L++V++    ++G+EG GF   +   +  R+  A++ +G A+ A
Sbjct: 198 LH-KIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECA 256

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
           F+ A  YA +RI FG PI   Q +Q
Sbjct: 257 FEDAARYANQRIQFGKPIGHNQLIQ 281

Length = 381

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  127 bits (320), Expect = 6e-35
 Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 6   STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
           ST + VH+ L    I   G++ QK+ YLPS      V C+ ++EP  GSDA+++ TTA K
Sbjct: 107 STFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATK 166

Query: 66  ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
               W+LNG K WI N   A   V  A+   + +   I  FI+   +PGL   K E+K+G
Sbjct: 167 VEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQ---INGFIVKKGAPGLKATKIENKIG 223

Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
           +R     +++L+DV +P +  L      F+     +  +R+ +A Q IGI+   +D    
Sbjct: 224 LRMVQNGDIVLKDVFVPDEDRL-PGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHR 282

Query: 186 YAGKRIAFGAPILKLQAVQ 204
           Y  +R  FGAP+   Q  Q
Sbjct: 283 YLKERKQFGAPLAAFQINQ 301

Length = 412

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score =  124 bits (313), Expect = 3e-34
 Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)

Query: 20  INKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWI 79
           I  +GT +QK  +LP  + G  + C G SEPG+GSD A + T A ++ D WV+NG K W 
Sbjct: 96  ILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWT 155

Query: 80  TNGYEAKAFVCIAQAD-KSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILED 138
           +  + A     + + D ++ KH+GI+  ++ MDSPG+++       G        V L+D
Sbjct: 156 SGAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDD 213

Query: 139 VKIPLDSVLGKEGEGFKVGLTGIDCARIGMAS 170
           V++P  + +G+  +G+KV +T ++  R+ +  
Sbjct: 214 VRVPDANRVGEVNDGWKVAMTTLNFERVSIGG 245

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score =  111 bits (278), Expect = 4e-29
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 1/182 (0%)

Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
           GT++Q +  +     G  +    I+EPG+GSD  ++ TT  + +    LNG+K +IT+  
Sbjct: 101 GTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160

Query: 84  EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
                V +A+   S      T + + M  PG+ + K E KLG+R  S C +  +DV++  
Sbjct: 161 YTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDE 219

Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
             + G+EG GF       D  R  +A    G A  AF+ A  YA +R+ FG  I + Q +
Sbjct: 220 KDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLI 279

Query: 204 QL 205
           Q 
Sbjct: 280 QE 281

Length = 380

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score =  109 bits (275), Expect = 2e-28
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 16/214 (7%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G               A  +   GT+ Q+E ++P   +G   G   ++EP +GSD   + 
Sbjct: 79  GDAPLMYASGTQGA--AATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALR 136

Query: 61  TTARKESD-HWVLNGTKSWITNGYEAKA-----FVCIAQADKSKKHKGITAFIIP----- 109
           T A  ++D  W +NG K +I+ G    +      V           KG++ F++P     
Sbjct: 137 TKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDD 196

Query: 110 MDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMA 169
            +  G+++ + E+K+G+  S TC ++ ++ K  L   +G+EG G       ++ AR+G+ 
Sbjct: 197 GERNGVTVARIEEKMGLHGSPTCELVFDNAKGEL---IGEEGMGLAQMFAMMNGARLGVG 253

Query: 170 SQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
           +QG G+A+AA+  A+ YA +R   G  I    AV
Sbjct: 254 TQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAV 287

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score =  108 bits (270), Expect = 5e-28
 Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 2/176 (1%)

Query: 32  YLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCI 91
           +L   + G  +    ++EP  GSDAA +   A ++ D +VLNG K+ I+   +A A V  
Sbjct: 105 WLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVF 164

Query: 92  AQ-ADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE 150
           A+   +++  +GI+AF++PMD PG++  + +   G RA    ++  E+V++P D +LG E
Sbjct: 165 ARTGSEAEGARGISAFLVPMDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHMLGNE 223

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206
           G+GF   + G D +R  +  Q + +A+AA D    Y  +R AFG P+   Q V  P
Sbjct: 224 GQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHP 279

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 99.3 bits (247), Expect = 1e-24
 Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 7/186 (3%)

Query: 19  LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSW 78
           +I  FG ++QK+ +LP   +  +  C G SEPGSGSD A++ T A K+ D W++NG K+W
Sbjct: 99  VIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158

Query: 79  ITNGYEAKAFVCIAQAD-KSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCN-VIL 136
            T    A    C+ + D  +KK  GI+  ++ M S G+++   +    I      N V  
Sbjct: 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQT---IDGGVEVNEVFF 215

Query: 137 EDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP 196
           +DV++P ++++G+E +G+      +   R G+A   +G+++       + A K  + G P
Sbjct: 216 DDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKP 273

Query: 197 ILKLQA 202
           +++   
Sbjct: 274 VIEDAK 279

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 97.5 bits (243), Expect = 5e-24
 Identities = 47/200 (23%), Positives = 97/200 (48%), Gaps = 23/200 (11%)

Query: 20  INKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSW 78
           ++++G+++QK+ +L   +DG     F ++EP  + SDA N+  +  ++ D +V+NG K W
Sbjct: 104 LHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWW 163

Query: 79  ITNGYEAKA----FVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST--- 131
            +   + +      +     D + +H+  +  ++PMD+PG+++        IR  S    
Sbjct: 164 SSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTI--------IRPLSVFGY 215

Query: 132 -------CNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAM 184
                    +  ++V++P  +++  EG GF++    +   RI    + IG A+ A +   
Sbjct: 216 DDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMC 275

Query: 185 EYAGKRIAFGAPILKLQAVQ 204
           + A  R AFG  + +   V 
Sbjct: 276 QRAVSREAFGKKLAQHGVVA 295

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 85.8 bits (212), Expect = 8e-20
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 4/188 (2%)

Query: 18  GLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKS 77
           G +   G+  QK  +LP  +DG+    F   E  S  D  ++ TTA+K  D WV++G K 
Sbjct: 95  GFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKF 154

Query: 78  WITNGYEAKAFVCIAQADKSKKHK-GITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVIL 136
            + NG  A   +  A+   +++ + GI  F++P  + G+++     + G+ A+   ++  
Sbjct: 155 VVLNGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAA---DITF 211

Query: 137 EDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP 196
             V +  D+ +G       +    +D AR  + ++ +G+   +    +EY   R  FG P
Sbjct: 212 TGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVP 271

Query: 197 ILKLQAVQ 204
           I   Q +Q
Sbjct: 272 IGSFQVLQ 279

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 19/183 (10%)

Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HWVLNGTKSWITNG 82
           G+++QKE YL   V G   G   ++EP  G+D   + T A   +D  + + GTK +I+ G
Sbjct: 164 GSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAG 223

Query: 83  ----YEAKAFVCIAQADKSKKH-KGITAFIIP--MDSPGLSLGKK--------EDKLGIR 127
                E    + +A+   S    KG++ F++P  +  P  SL           E K+GI+
Sbjct: 224 DHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIK 283

Query: 128 ASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYA 187
            SSTC +  E+    L   +G+   G K   T ++ AR+G A +G+  A+ AF  A+ YA
Sbjct: 284 GSSTCQLSFENSVGYL---IGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYA 340

Query: 188 GKR 190
            +R
Sbjct: 341 RER 343

Length = 622

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 46  GISEPGSGSDAANMLTTARK-ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKK-HKGI 103
            ++E   GSD     TTA +     + LNG K W  +   A A + +A+ + +    +G+
Sbjct: 152 WMTEKQGGSDLGANETTAERSGGGVYRLNGHK-WFASAPLADAALVLARPEGAPAGARGL 210

Query: 104 TAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL 158
           + F++P         G  + + +DKLG R+ +T  V  +D +  L   +G EG+G    L
Sbjct: 211 SLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAEAYL---IGDEGKGIYYIL 267

Query: 159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILK 199
             ++ +R+  A   +GI + A   A  YA  R AFG P++ 
Sbjct: 268 EMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLID 308

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 73.3 bits (181), Expect = 8e-18
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 44 CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD 95
           F ++EPG+GSD A++ TTA ++ D WVLNG K WITN   A   + +A+  
Sbjct: 1  AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 36/221 (16%)

Query: 11  VHNCLYAG-LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA---RKE 66
           V N L  G L+  +GT++QK+ +LP   DGT + CF ++ P +GSDA  +  T    R E
Sbjct: 161 VPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGE 220

Query: 67  SD-HWVL----NGTKSWITNGYEAK----AFVCIAQADK---SKKHKGITAFIIPMDSPG 114
            +   VL       K +IT    A     AF  +   D     KK  GIT  +IP D PG
Sbjct: 221 FEGEEVLGLRLTWDKRYITLAPVATVLGLAFK-LRDPDGLLGDKKELGITCALIPTDHPG 279

Query: 115 LSLGKKEDKLG-------IRASSTCNVILEDVKIPLDSVLG---KEGEGFKVGLTGIDCA 164
           + +G++ + LG        R         +DV IPLD ++G     G G+++ +  +   
Sbjct: 280 VEIGRRHNPLGMAFMNGTTRG--------KDVFIPLDWIIGGPDYAGRGWRMLVECLSAG 331

Query: 165 R-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           R I + + G      A      YA  R  FG PI + + VQ
Sbjct: 332 RGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQ 372

Length = 774

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 62/236 (26%)

Query: 11  VHNCLYAG-LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDH 69
           V N L  G L+  +GT +QK+ YLP    G  + CF ++ P +GSDA ++  T       
Sbjct: 162 VPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGE 221

Query: 70  WV--------LNGTKSWITNGYEAK----AFVCIAQADK---------SKKHKGITAFII 108
           W         L   K +IT    A     AF       K          K+  GIT  +I
Sbjct: 222 WQGEEVLGMRLTWNKRYITLAPIATVLGLAF-------KLYDPDGLLGDKEDLGITCALI 274

Query: 109 PMDSPGLSLGKKEDKLG-------IRASSTCNVILEDVKIPLDSVLGKE---GEGFK--- 155
           P D+PG+ +G++   L         R         +DV IPLD ++G     G+G++   
Sbjct: 275 PTDTPGVEIGRRHFPLNVPFQNGPTRG--------KDVFIPLDYIIGGPKMAGQGWRMLM 326

Query: 156 ----VGLTGIDCAR-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206
               VG       R I + S   G A+ A      YA  R  F  PI K + ++ P
Sbjct: 327 ECLSVG-------RGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEP 375

Length = 777

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 66.0 bits (161), Expect = 8e-13
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 43/239 (17%)

Query: 9   LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-- 66
           L V   L+ G +   GTKK ++ Y     +    GCF ++E   GS+   + TTA  +  
Sbjct: 141 LGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPL 200

Query: 67  SDHWVLN-----GTKSWITN----GYEAKAFVCI---AQADKSKKHKGITAFIIPMDS-- 112
           +D +V+N       K WI N    G  A  F  +       K     G+ AFI+P+    
Sbjct: 201 TDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMK 260

Query: 113 -----PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE--------------- 152
                PG+ +     K+G+       +    V+IP D++L + G+               
Sbjct: 261 THQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTIN 320

Query: 153 -GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP------ILKLQAVQ 204
             F   L  +   R+G+A   +G+ +A+   A+ Y+  R  FG P      IL  Q+ Q
Sbjct: 321 KRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQ 379

Length = 686

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 38/239 (15%)

Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
                L +H  L+   I   GT + ++ +L    +   +GCF  +E G GS+   + TTA
Sbjct: 97  SLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTA 156

Query: 64  R--KESDHWVLN-----GTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS--- 112
                +  +V+N      TK W  N G  A   V  AQ     K+ G+ AFI+P+     
Sbjct: 157 TYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKT 216

Query: 113 ----PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE---------------- 152
               PG+++G    K+G+       +   +V+IP +++L + G+                
Sbjct: 217 HQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNK 276

Query: 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-------APILKLQAVQ 204
            +   L      R+G+        + A   A+ Y+  R  FG         IL  Q  Q
Sbjct: 277 RYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQ 335

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 22  KFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWIT 80
           ++G K+Q+  +L   ++G     F ++EP  + SDA N+  + R++ D +V+NGTK W +
Sbjct: 531 RYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTS 590

Query: 81  NGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS--STCNVI 135
              + +  V I        + KHK  +  ++ + +PG+ + +     G   +      + 
Sbjct: 591 GAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEIS 650

Query: 136 LEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA 195
            E+V++P  ++L  EG GF++    +   R+    + IG A+      ++ A  R AFG 
Sbjct: 651 FENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK 710

Query: 196 PI 197
            I
Sbjct: 711 LI 712

Length = 822

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 8   ILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES 67
            L  H   +   +   G ++ ++ +    ++G   G   +SE GS       LT   ++ 
Sbjct: 72  ALRAH-FGFVEALLLAGPEQFRKRWFGRVLNGWIFGN-AVSERGS-VRPGTFLTATVRDG 128

Query: 68  DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIR 127
             +VLNG K + T    +      A  ++ K    +    +P D PG+++    D  G R
Sbjct: 129 GGYVLNGKKFYSTGALFSDWVTVSALDEEGK----LVFAAVPTDRPGITVVDDWDGFGQR 184

Query: 128 --ASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
             AS T  V  ++V++  D VL +     +  L      ++ +A+   GIA+AA D A+ 
Sbjct: 185 LTASGT--VTFDNVRVEPDEVLPRPNAPDRGTLLTA-IYQLVLAAVLAGIARAALDDAVA 241

Query: 186 YAGKR 190
           Y   R
Sbjct: 242 YVRSR 246

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           G GF V +  ++  R+ +A+  +G+A+ A D A+EYA +R AFG P++  Q ++
Sbjct: 1   GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIR 54

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
           C   + I TVH  +        GT +Q   ++PS ++   VGC+  +E G GSD  N+ T
Sbjct: 88  CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLET 147

Query: 62  TAR--KESDHWVLN-----GTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS- 112
           TA   K+++ +V++       K W    G+     +  A+   + K+KG+  F++ +   
Sbjct: 148 TATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDK 207

Query: 113 ------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK 149
                  G+ +G    K+G        +  +  +IPLDS+L +
Sbjct: 208 ETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLAR 250

Length = 646

>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 25/164 (15%)

Query: 46  GISEPGSGSDAANMLTTARKESDH-WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGIT 104
           G++E   GSD  +  T A + +D  + L G K W  +  ++ A + +AQA       G++
Sbjct: 183 GMTEKQGGSDVLSNTTRAERLADGSYRLVGHK-WFFSVPQSDAHLVLAQAKG-----GLS 236

Query: 105 AFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKV--- 156
            F +P   P      + L + +DKLG R++++  V  +D    L   LG+EGEG ++   
Sbjct: 237 CFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWL---LGEEGEGIRLILK 293

Query: 157 --GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPIL 198
             G+T  DCA   + S G+   + AF  A+ +A +R  FG P++
Sbjct: 294 MGGMTRFDCA---LGSHGL--MRRAFSVAIYHAHQRQVFGKPLI 332

Length = 538

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG 39
                   L+VH+ L A  I +FGT++QKE YLP    G
Sbjct: 74  ADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLASG 112

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           H      ++   G+++QK  +    + G   G    SE G+  +  +  T  R++ D + 
Sbjct: 87  HFYA-LEVLRLTGSEEQKRFFFGEVLAGERFGN-AFSERGT-RNVLDFQTRLRRDGDGYR 143

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
           LNG K + T    A     +A  D  +      AF+ P D+PGL++       G R +++
Sbjct: 144 LNGRKFYSTGALFAHWIPVLALDDDGRPV---LAFV-PRDAPGLTVIDDWSGFGQRTTAS 199

Query: 132 CNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKR 190
             V+L+DV++P + V+  +    +    G   A+I  A+   GIA+AA    + +  +R
Sbjct: 200 GTVLLDDVRVPAEHVVPIQRAFDRPTAAG-PVAQIIHAAIDAGIARAALADTLAFVRER 257

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 30/215 (13%)

Query: 9   LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANM--LTTARKE 66
           L VH  L+ G I   GTK+  + +L    D    GCF ++E G GS+   +  +TT   +
Sbjct: 153 LGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPK 212

Query: 67  SDHWVLN-----GTKSWITNGYE-AKAFVCIAQADKSKKHKGITAFIIPMDS------PG 114
           ++ +V+N       K WI      A   +  +Q   + K++G+ AFI  +        P 
Sbjct: 213 TEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPN 272

Query: 115 LSLGKKEDKLGIRASSTCNVILEDVKIP----LDSVLGKEGEG------------FKVGL 158
           + +     K+G+       +  ++++IP    L+SV     +G            F   L
Sbjct: 273 IRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFL 332

Query: 159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF 193
             +   R+ +A   I  ++     A+ Y+  R AF
Sbjct: 333 APLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAF 367

Length = 680

>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 18/142 (12%)

Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESDHWVLN-----GTK 76
           GT++Q++ +LP       +GC+  +E G GS+   + TTA    ++D +V++      +K
Sbjct: 114 GTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSK 173

Query: 77  SWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDKLGIRA 128
            W    G  +   V  A+   + K  GI  FI+ + S       PG+++G    K G  A
Sbjct: 174 WWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGA 233

Query: 129 SSTCN---VILEDVKIPLDSVL 147
            +T +   +  + V+IP D +L
Sbjct: 234 YNTMDNGFLRFDHVRIPRDQML 255

Length = 664

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 44/215 (20%)

Query: 1   GCGGTSTIL-TVHNCLYAG-LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
           G    S +L T+ +  +   L++  G+K+ K  YL +  DGT +  +   E G GSD + 
Sbjct: 92  GTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISM 150

Query: 59  MLTTARKESD-HWVLNGTKSWITNGYE------AKAFVCIAQADKSKKHKGITAFIIPMD 111
             T A    D  +VL G K              AK     A  + + +    + FI   D
Sbjct: 151 NTTKASLTDDGSYVLTGQKRCEFAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKD 210

Query: 112 SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK--------------VG 157
           + G+S+               +V+ E+   P   V+G  GEGFK                
Sbjct: 211 AKGVSVNGD------------SVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAAS 256

Query: 158 LTGI-----DCARIGMASQGIGIAQAAFDCAMEYA 187
           L GI        R   A +G     A+F CAM YA
Sbjct: 257 LLGIMKRVVQELRGSNAEEGATDTVASFACAM-YA 290

Length = 520

>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 166 IGMASQGIGIAQAAFDCAMEYAGKRI--AFGAPILKLQAVQL 205
           +G A+  +G A+ A    +E A +R+    GAP+ +  A Q 
Sbjct: 1   LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQT 42

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG0139|consensus	398		100.0
KOG0140|consensus	408		100.0
KOG0141|consensus	421		100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
PLN02636	686	acyl-coenzyme A oxidase	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
KOG0138|consensus	432		100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
PLN02312	680	acyl-CoA oxidase	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	100.0
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	100.0
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	100.0
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	100.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	100.0
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	100.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	100.0
KOG0137|consensus	634		100.0
PLN02876	822	acyl-CoA dehydrogenase	100.0
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	100.0
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	100.0
PLN02443	664	acyl-coenzyme A oxidase	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	100.0
KOG1469|consensus	392		100.0
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.97
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.97
KOG0135|consensus	661		99.94
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	99.87
KOG0136|consensus	670		99.84
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.69
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	99.08
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	98.95
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.94
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	98.49
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	97.59
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	94.73

>KOG0139|consensus

Probab=100.00  E-value=3.7e-51  Score=319.85  Aligned_cols=205  Identities=50%  Similarity=0.837  Sum_probs=198.5

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+|++.+..+|+.+...+|..+|+++||++|+|.+. |+.+++||+|||+.|||.....|+|+++||.|+|||.|.|+|
T Consensus       111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt  189 (398)
T KOG0139|consen  111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT  189 (398)
T ss_pred             cCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence            5899999999999999999999999999998887765 888999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+.+|++++|++..++..++.++++|+||+|+||+++..+.+++|||++.++.++|+||+||++++||+.|.|+.+....
T Consensus       190 N~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~  269 (398)
T KOG0139|consen  190 NAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEV  269 (398)
T ss_pred             CCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHh
Confidence            99999999999999877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+.+|+.++++.+|+++.|+|.+++|+++|.+||++|.+||.+||+
T Consensus       270 Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhq  315 (398)
T KOG0139|consen  270 LNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQ  315 (398)
T ss_pred             cCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999984

>KOG0140|consensus

Probab=100.00  E-value=2.1e-46  Score=289.22  Aligned_cols=205  Identities=41%  Similarity=0.695  Sum_probs=198.0

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|-++...+..|. +++++|-.+|++|||++||+++++..+++++++|||+.|||...+.|+|++.+|.|+|||.|.|+|
T Consensus       102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt  180 (408)
T KOG0140|consen  102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT  180 (408)
T ss_pred             cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence            5788888999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC---CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHH
Q psy1303          81 NGYEAKAFVCIAQADKS---KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVG  157 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~---~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~  157 (206)
                      |+.+++|++|++|++++   +..+.+..|+|+.|+||++..+....+|.|..++-.+.|+||+||.+++||.++.||.+.
T Consensus       181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA  260 (408)
T KOG0140|consen  181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA  260 (408)
T ss_pred             cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence            99999999999999875   567889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       158 ~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+..|..+++..+|.++++++++.+|+..|++||+||+++|.+|++
T Consensus       261 m~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~  309 (408)
T KOG0140|consen  261 MGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFM  309 (408)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHH
Confidence            9999999999999999999999999999999999999999999999863

>KOG0141|consensus

Probab=100.00  E-value=1.5e-45  Score=284.79  Aligned_cols=205  Identities=40%  Similarity=0.700  Sum_probs=197.0

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      ..++|+.|..|.+++...|.+.|++||+++|+|++.+|+.++++|+|||+.|||...+.+.|++++++|+|||.|.|+||
T Consensus       118 ~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witN  197 (421)
T KOG0141|consen  118 SGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITN  197 (421)
T ss_pred             cCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEec
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          82 GYEAKAFVCIAQADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      ++.||.++|.|+++..  +...+++.|+|+...||++..+..+++|||+.+++++.|+|.+||+++++|..+.|+-+++.
T Consensus       198 G~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMs  277 (421)
T KOG0141|consen  198 GPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMS  277 (421)
T ss_pred             CCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEec
Confidence            9999999999999854  56789999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      -++..|+.+++..+|+++.++|.+..|+++|++||+++++||.+|++
T Consensus       278 gLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~Qgk  324 (421)
T KOG0141|consen  278 GLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGK  324 (421)
T ss_pred             CCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhH
Confidence            99999999999999999999999999999999999999999999963

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=2.1e-42  Score=287.34  Aligned_cols=206  Identities=42%  Similarity=0.696  Sum_probs=191.4

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      .|+++++.+.+|...+...|..+++++|+++|++++++|++++++++|||+.|+|...+++++++++|||+|||+|+|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs  155 (376)
T cd01156          76 ASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWIT  155 (376)
T ss_pred             cchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEec
Confidence            47888888888875566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++..+|+++|.++.+++++..++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++..+.|+......
T Consensus       156 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~  235 (376)
T cd01156         156 NGPDADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSG  235 (376)
T ss_pred             CCCcCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHH
Confidence            99999999999997654445678899999999999998899999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus       236 ~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~  281 (376)
T cd01156         236 LDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGK  281 (376)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999864

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=2.2e-42  Score=289.55  Aligned_cols=206  Identities=39%  Similarity=0.656  Sum_probs=191.4

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++++.+|...+...|..+++++|+++|++.+++|+.++++++|||+.|+|...+.+++++++|||+|||+|.|++
T Consensus       102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs  181 (404)
T PLN02519        102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT  181 (404)
T ss_pred             hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence            47889999888875566788999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.++|+++|.++.++++++.++.+|+||++.||+++.++|+++|+++++++++.|+||+||++++++.+++|+......
T Consensus       182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~  261 (404)
T PLN02519        182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSG  261 (404)
T ss_pred             CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHH
Confidence            99999999999998654455678899999999999999999999999999999999999999999999999999877788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ++..++.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       262 ~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~  307 (404)
T PLN02519        262 LDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGK  307 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHH
Confidence            8899999999999999999999999999999999999999999864

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=1.1e-41  Score=282.99  Aligned_cols=204  Identities=39%  Similarity=0.736  Sum_probs=190.0

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+.+|. ++..++..+++++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|+|++
T Consensus        75 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs  153 (375)
T cd01162          75 GCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFIS  153 (375)
T ss_pred             hchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEec
Confidence            4788888888887 777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.++|+++|.++.+++ +..++.+|+||++.||+++.+.|+++|+++++++++.||||+||++++++.++.|+......
T Consensus       154 ~~~~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~  232 (375)
T cd01162         154 GAGDSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAG  232 (375)
T ss_pred             CCCCCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHH
Confidence            99999999999997542 34567899999999999999999999999999999999999999999999999999887788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|.+||+||.++|.+|++
T Consensus       233 l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~  278 (375)
T cd01162         233 LNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFK  278 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHH
Confidence            8899999999999999999999999999999999999999999874

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=2.4e-41  Score=280.54  Aligned_cols=202  Identities=33%  Similarity=0.608  Sum_probs=186.9

Q ss_pred             chhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC
Q psy1303           5 TSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYE   84 (206)
Q Consensus         5 ~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~   84 (206)
                      .++.+.+|..++..++..+++++|+++|++++.+|+.++++++|||+.|+|...+.++++++++||+|||+|.|+|++.+
T Consensus        76 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~  155 (372)
T cd01160          76 SGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGML  155 (372)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCc
Confidence            46677777756677889999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             CCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhh
Q psy1303          85 AKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDC  163 (206)
Q Consensus        85 a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~  163 (206)
                      ||+++|.++++++ +++.++.+|+||++.||+++.++|+.+||++++++++.|+||+||++++|+.++.|+......+..
T Consensus       156 Ad~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~  235 (372)
T cd01160         156 ADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQ  235 (372)
T ss_pred             cCEEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHH
Confidence            9999999998653 345678899999999999998899999999999999999999999999999999999888888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         164 ARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       164 ~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .++..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus       236 ~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~  278 (372)
T cd01160         236 ERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHK  278 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHH
Confidence            9999999999999999999999999999999999999999874

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=3.9e-41  Score=280.59  Aligned_cols=202  Identities=35%  Similarity=0.594  Sum_probs=185.6

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+|+++.+.+|..++...|..+++++|+++|++++++|++++++++|||+.|+|+..+.+++++++|||+|||+|.|+|
T Consensus        86 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is  165 (386)
T cd01151          86 VDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWIT  165 (386)
T ss_pred             hChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeec
Confidence            36788888878775566778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++..||+++|.++.+++   .++.+|+||++.||+++.+.|+++|+++++++++.|+||+||++++++. ++|+......
T Consensus       166 ~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~  241 (386)
T cd01151         166 NSPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKC  241 (386)
T ss_pred             CCCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHH
Confidence            99999999999998642   4677899999999999999999999999999999999999999999986 4688777778


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|.+||+|++++|.+|++
T Consensus       242 ~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~  287 (386)
T cd01151         242 LNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKK  287 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHH
Confidence            8899999999999999999999999999999999999999999874

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=2.7e-41  Score=280.89  Aligned_cols=204  Identities=36%  Similarity=0.599  Sum_probs=185.7

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+..|. ++...+..+++++|+++||+++++|+.+.++++|||+.|+|...+.+++++++|||+|||+|.|+|+
T Consensus        76 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~  154 (378)
T cd01157          76 CTGVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  154 (378)
T ss_pred             hhHHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecC
Confidence            667666665655 6666777789999999999999999999999999999999999899999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCC---CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303          82 GYEAKAFVCIAQADKSK---KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL  158 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~---~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~  158 (206)
                      +.+||+++|.+++++++   +.+++.+|+||++.||+++.+.|+.+|+++++++++.||||+||++++++.++.|+....
T Consensus       155 ~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~  234 (378)
T cd01157         155 GGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAM  234 (378)
T ss_pred             CccCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHH
Confidence            99999999999976432   235788999999999999999999999999999999999999999999998888998888


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...|+.+++.++|+++++++.+++|+++|.+||+||.++|.+|++
T Consensus       235 ~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~  282 (378)
T cd01157         235 GAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFM  282 (378)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHH
Confidence            888889999999999999999999999999999999999999999874

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=3.4e-41  Score=279.69  Aligned_cols=206  Identities=53%  Similarity=0.879  Sum_probs=191.7

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      .|+|+++++.+|...+...+..+++++|+++|++++.+|+.++++++|||++|++...++++++++++||+|||+|.|++
T Consensus        73 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vs  152 (373)
T cd01158          73 VDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWIT  152 (373)
T ss_pred             hCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEc
Confidence            48899999999986666788999999999999999999999999999999999998889999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.++|+++|.++.+++++..++.+|+||.+.||+++.++|+.+||++++++.+.|+||+||++++++.++.++......
T Consensus       153 g~~~ad~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~  232 (373)
T cd01158         153 NGGEADFYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQT  232 (373)
T ss_pred             CCCcCCEEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHH
Confidence            99999999999987554445678899999999999999999999999999999999999999999999999999887788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       233 ~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~  278 (373)
T cd01158         233 LDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFK  278 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHH
Confidence            8899999999999999999999999999999999999999999874

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=3.1e-41  Score=279.93  Aligned_cols=203  Identities=31%  Similarity=0.529  Sum_probs=185.4

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |++++++...+. ++...+..+++++|+++||+++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|.|+|+
T Consensus        76 ~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~  154 (372)
T TIGR03207        76 DLSMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISA  154 (372)
T ss_pred             CccHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcC
Confidence            677777655555 6667788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          82 GYEAKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      +.++|+++|.++.+++ ++..++.+|+||++.||+++ .+|+.+|+++++++++.|+||+||++++++.++.|+......
T Consensus       155 ~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~  233 (372)
T TIGR03207       155 ADQADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQG  233 (372)
T ss_pred             CCcCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHH
Confidence            9999999999997542 23456889999999999997 579999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ++..|+.++++++|+++++++.+++|+++|++||+|+.++|.||++
T Consensus       234 l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~  279 (372)
T TIGR03207       234 FDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHP  279 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHH
Confidence            9999999999999999999999999999999999999999999874

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=5.1e-41  Score=278.95  Aligned_cols=189  Identities=25%  Similarity=0.470  Sum_probs=174.1

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA   94 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~   94 (206)
                      ++..++..+|+++||++||+++++|+.++++++|||+.|+|...+++++++++|+|+|||+|.||+++..||+++|++++
T Consensus        92 ~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~  171 (378)
T TIGR03203        92 IGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTART  171 (378)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEec
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303          95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI  173 (206)
Q Consensus        95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~  173 (206)
                      +++ +++.++++|+||.+.||+++.+.++.+|+   .++++.||||+||+++++|.+++|+..+...++..|+.+++.++
T Consensus       172 ~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~  248 (378)
T TIGR03203       172 KGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAV  248 (378)
T ss_pred             CCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            543 24567899999999999999766666665   56899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+++++++.+++|+++|+|||+||++||.|||+
T Consensus       249 G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~  281 (378)
T TIGR03203       249 GLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHR  281 (378)
T ss_pred             HHHHHHHHHHHHHHhcCeecCccchhhHHHHHH
Confidence            999999999999999999999999999999985

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=7.6e-41  Score=280.74  Aligned_cols=205  Identities=40%  Similarity=0.623  Sum_probs=186.6

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEE--eCCEEEEeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK--ESDHWVLNGTKSWI   79 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~v   79 (206)
                      |+++++.+.+|..++...+..+++++|+++|++++++|+.++++++|||+.|+|...+.+++++  ++++|+|||+|.|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~v  178 (409)
T cd01161          99 DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWI  178 (409)
T ss_pred             ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEee
Confidence            6778888888874555567889999999999999999999999999999999999989999998  45689999999999


Q ss_pred             eCCCCCCEEEEEEEeCC--CCC--CCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303          80 TNGYEAKAFVCIAQADK--SKK--HKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK  155 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~--~~~--~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~  155 (206)
                      ||+.+||+++|.++.++  .++  ++++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++.+++|+.
T Consensus       179 s~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~  258 (409)
T cd01161         179 TNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFK  258 (409)
T ss_pred             cCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHH
Confidence            99999999999998752  111  35688999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .....+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       259 ~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~  309 (409)
T cd01161         259 VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEK  309 (409)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHH
Confidence            888889999999999999999999999999999999999999999999974

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>PLN02636 acyl-coenzyme A oxidase

Probab=100.00  E-value=5.7e-41  Score=294.05  Aligned_cols=205  Identities=28%  Similarity=0.478  Sum_probs=187.8

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G   74 (206)
                      |++++..+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++  +|+|+||     |
T Consensus       134 d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g  213 (686)
T PLN02636        134 DMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGA  213 (686)
T ss_pred             chhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCe
Confidence            67777778888878888999999999999999999999999999999999999999999999998  7899999     9


Q ss_pred             eeeeeeCCCC-CCEEEEEEEeC-CC-----CCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEecee
Q psy1303          75 TKSWITNGYE-AKAFVCIAQAD-KS-----KKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVK  140 (206)
Q Consensus        75 ~k~~v~~~~~-a~~~~v~a~~~-~~-----~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~  140 (206)
                      .|+|++|+.. +|+++|+|++. ++     +++.++.+|+||.+       .|||++.+..+++|+++.+++.+.||||+
T Consensus       214 ~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVr  293 (686)
T PLN02636        214 IKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVR  293 (686)
T ss_pred             EEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEE
Confidence            9999999975 99999999986 21     13568999999987       59999999999999999999999999999


Q ss_pred             eCCCCccCCC----------------CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc------cc
Q psy1303         141 IPLDSVLGKE----------------GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP------IL  198 (206)
Q Consensus       141 vp~~~~l~~~----------------~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~------l~  198 (206)
                      ||.+++|+..                +.||..+...+..+|+.+++.++|++++|++++++|+++|+|||+|      |.
T Consensus       294 VP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~  373 (686)
T PLN02636        294 IPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISIL  373 (686)
T ss_pred             ECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCccc
Confidence            9999999532                4688888899999999999999999999999999999999999999      99


Q ss_pred             ccccccCC
Q psy1303         199 KLQAVQLP  206 (206)
Q Consensus       199 ~~~~iq~~  206 (206)
                      +||.+|++
T Consensus       374 d~q~vQ~~  381 (686)
T PLN02636        374 DYQSQQHK  381 (686)
T ss_pred             ccHHHHHH
Confidence            99999974

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-40  Score=279.67  Aligned_cols=200  Identities=37%  Similarity=0.644  Sum_probs=184.5

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCC-EEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~v~   80 (206)
                      |+|+++.+..|..++...+..+++++|+++|++++++|+.++++++|||++|+|.....+++++++| +|+|||+|.|+|
T Consensus       112 ~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs  191 (410)
T PTZ00461        112 DPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWIT  191 (410)
T ss_pred             CchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeEC
Confidence            6777777777764566678889999999999999999999999999999999999999999999865 799999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++..||+++|.++.++     ++.+|+||++.||+++.+.|+.+|+++++++++.|+||+||++++|+.++.|+......
T Consensus       192 ~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~  266 (410)
T PTZ00461        192 NGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRN  266 (410)
T ss_pred             CCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHH
Confidence            9999999999998642     57899999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       267 ~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  312 (410)
T PTZ00461        267 LELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRY  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHH
Confidence            8999999999999999999999999999999999999999999863

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.7e-40  Score=276.19  Aligned_cols=203  Identities=28%  Similarity=0.425  Sum_probs=182.8

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+|+++++.+|.  ....+..+++++|+++|++++++|+.+.++++|||+.|+|...+.+++++++|||+|||+|.|+|
T Consensus        80 ~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis  157 (380)
T PRK03354         80 LGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFIT  157 (380)
T ss_pred             cCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEc
Confidence            4677777666654  34567888999999999999999999999999999999999989999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.++|+++|.++.+++++...+.+|+||++.+|+++ .+|+++||++++++++.|+||+||++++++.++.|+......
T Consensus       158 ~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~  236 (380)
T PRK03354        158 SSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEE  236 (380)
T ss_pred             CCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHH
Confidence            9999999999999754334456788999999999998 479999999999999999999999999999988888777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|++||+||.++|.+|++
T Consensus       237 ~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~  282 (380)
T PRK03354        237 FDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEK  282 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHH
Confidence            8889999999999999999999999999999999999999999874

>KOG0138|consensus

Probab=100.00  E-value=6.5e-42  Score=264.03  Aligned_cols=200  Identities=33%  Similarity=0.574  Sum_probs=183.3

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCE--EEEeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDH--WVLNGTKSWI   79 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~v   79 (206)
                      |.+.-....+|.+++...|..||+++||++|||.+++|++++||++|||.+|||+..++|+|++++.+  |.|||.|.|+
T Consensus       129 Ds~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI  208 (432)
T KOG0138|consen  129 DSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWI  208 (432)
T ss_pred             hhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeee
Confidence            55555667788889999999999999999999999999999999999999999999999999999876  9999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          80 TNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      +|++.||+++|+||...+   ..+.=|+|+++.+|++..+...++++|...++.+.+|+|+||+|+++... .++.--+.
T Consensus       209 ~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~-~s~qgpf~  284 (432)
T KOG0138|consen  209 TNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGA-SSLQGPFG  284 (432)
T ss_pred             cCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCc-cccCCchh
Confidence            999999999999998742   35556999999999999888999999999999999999999999999643 35555668


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL  205 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~  205 (206)
                      +++..|+.+++..+|+++.+++.+..|...|+|||+|++.+|.+|.
T Consensus       285 cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~  330 (432)
T KOG0138|consen  285 CLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQK  330 (432)
T ss_pred             hhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            8999999999999999999999999999999999999999999885

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=2e-40  Score=275.94  Aligned_cols=191  Identities=29%  Similarity=0.467  Sum_probs=176.0

Q ss_pred             hhHHHHhccCCHHHHHhhhhHH-hcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEE
Q psy1303          15 LYAGLINKFGTKKQKETYLPSF-VDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQ   93 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i-~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~   93 (206)
                      +....|..+|+++|+++|++++ .+|+.++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|.++
T Consensus        91 ~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~  170 (381)
T PRK12341         91 QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLAR  170 (381)
T ss_pred             hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEE
Confidence            4566788899999999999998 599988999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHH
Q psy1303          94 ADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQG  172 (206)
Q Consensus        94 ~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~  172 (206)
                      .+++ ++..++.+|+||++.+||++ .+|+++|+++++++.+.|+||+||++++++.++.|+......++..|+.+++++
T Consensus       171 ~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~  249 (381)
T PRK12341        171 DPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARS  249 (381)
T ss_pred             cCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHH
Confidence            7643 23357889999999999999 679999999999999999999999999999999998877778889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         173 IGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       173 ~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +|+++++++.+++|+++|++||+|+.++|.||++
T Consensus       250 lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~  283 (381)
T PRK12341        250 LGFAECAFEDAARYANQRIQFGKPIGHNQLIQEK  283 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHH
Confidence            9999999999999999999999999999999874

>PLN02312 acyl-CoA oxidase

Probab=100.00  E-value=2.2e-40  Score=289.90  Aligned_cols=205  Identities=25%  Similarity=0.450  Sum_probs=187.7

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G   74 (206)
                      |++++..+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++  +|+|+||     |
T Consensus       146 d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g  225 (680)
T PLN02312        146 DHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESA  225 (680)
T ss_pred             cchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCe
Confidence            66777778888878888999999999999999999999999999999999999999999999998  4789999     7


Q ss_pred             eeeeeeCC-CCCCEEEEEEEeCCCCCCCceEEEEee-c--C---CCCeeeccccccCCCCCCceeeEEEeceeeCCCCcc
Q psy1303          75 TKSWITNG-YEAKAFVCIAQADKSKKHKGITAFIIP-M--D---SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVL  147 (206)
Q Consensus        75 ~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~lvp-~--~---~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l  147 (206)
                      .|+|++|+ ..|++++|+|++..++++.++.+|+|| +  +   .|||++.+..+++|+++.+++.+.||||+||.+++|
T Consensus       226 ~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlL  305 (680)
T PLN02312        226 QKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL  305 (680)
T ss_pred             EEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhC
Confidence            99999998 789999999998755556789999998 2  3   799999999999999999999999999999999999


Q ss_pred             CC----------------CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc----c---cccccccc
Q psy1303         148 GK----------------EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA----P---ILKLQAVQ  204 (206)
Q Consensus       148 ~~----------------~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~----~---l~~~~~iq  204 (206)
                      +.                ++.||..+...+..+|+.+++.++|++++|++.+++|+++|+|||+    |   |.+||.+|
T Consensus       306 g~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q  385 (680)
T PLN02312        306 NSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQ  385 (680)
T ss_pred             CccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHH
Confidence            84                5678888888999999999999999999999999999999999995    4   99999999


Q ss_pred             CC
Q psy1303         205 LP  206 (206)
Q Consensus       205 ~~  206 (206)
                      ++
T Consensus       386 ~r  387 (680)
T PLN02312        386 RR  387 (680)
T ss_pred             HH
Confidence            75

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=3.4e-40  Score=276.88  Aligned_cols=201  Identities=34%  Similarity=0.534  Sum_probs=183.8

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+++++|+++|++++++|+.+++++++||+.|+|...+.+++++++|||+|||+|.|+++
T Consensus       103 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~  182 (412)
T PLN02526        103 DASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGN  182 (412)
T ss_pred             CchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecC
Confidence            67777777777755666899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +..||+++|.++.+++   .++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++..+ ++......+
T Consensus       183 ~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~  258 (412)
T PLN02526        183 STFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVL  258 (412)
T ss_pred             CCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHH
Confidence            9999999999997532   357889999999999999999999999999999999999999999997653 676677788


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+.+++.++|+++++++.+++|+++|.+||+||++||.+|++
T Consensus       259 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~  303 (412)
T PLN02526        259 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEK  303 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHH
Confidence            999999999999999999999999999999999999999999874

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=3.8e-40  Score=289.21  Aligned_cols=204  Identities=31%  Similarity=0.493  Sum_probs=179.9

Q ss_pred             CCcchhhhhhhhhhh-HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEE-----EEeCC---EEEE
Q psy1303           2 CGGTSTILTVHNCLY-AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA-----RKESD---HWVL   72 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a-----~~~~~---g~~l   72 (206)
                      |.+++..+.+|+++. ..+|.++|++|||++|||++++|+.+.|+++|||+.|||...+++++     +++++   ||+|
T Consensus       152 ~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvL  231 (774)
T PRK13026        152 SVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRL  231 (774)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEE
Confidence            556666676776454 45899999999999999999999999999999999999998887554     35676   6999


Q ss_pred             eeeeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303          73 NGTKSWITNGYEAKAFVCIAQA-DKS-----KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV  146 (206)
Q Consensus        73 ~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~  146 (206)
                      ||+|.|+|++..||+++|.++. +++     +++.++++|+||++.|||++.+.++.+|++.. ++++.|+||+||.+++
T Consensus       232 NG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~l  310 (774)
T PRK13026        232 TWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWI  310 (774)
T ss_pred             EEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHh
Confidence            9999999999999999887764 332     23568999999999999999888999999864 5899999999999999


Q ss_pred             cCCC---CccHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         147 LGKE---GEGFKVGLTGIDCAR-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       147 l~~~---~~~~~~~~~~~~~~~-~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ||.+   ++||..+...++..| +.+++.++|+++++++.+++|+++|+|||+||++||.|||+
T Consensus       311 LG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~  374 (774)
T PRK13026        311 IGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEA  374 (774)
T ss_pred             cCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHH
Confidence            9975   789999999999999 89999999999999999999999999999999999999974

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=4.6e-40  Score=289.49  Aligned_cols=204  Identities=29%  Similarity=0.474  Sum_probs=181.3

Q ss_pred             CCcchhhhhhhhhhhH-HHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCcee-----EEEEeCC---EEEE
Q psy1303           2 CGGTSTILTVHNCLYA-GLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT-----TARKESD---HWVL   72 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~-~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~-----~a~~~~~---g~~l   72 (206)
                      |++++..+.+|++++. .+|.++|+++||++|||++++|+.+.|+++|||+.|||...+.+     +++++++   ||+|
T Consensus       153 ~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vL  232 (777)
T PRK09463        153 SGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRL  232 (777)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEE
Confidence            6677777777775553 57899999999999999999999999999999999999988764     3445666   6999


Q ss_pred             eeeeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303          73 NGTKSWITNGYEAKAFVCIAQA-DKS-----KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV  146 (206)
Q Consensus        73 ~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~  146 (206)
                      ||+|.|+|++..||+++|.++. +++     +++.++++|+||++.||+++.+.+..+|++ ..++++.|+||+||.+++
T Consensus       233 NG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~l  311 (777)
T PRK09463        233 TWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYI  311 (777)
T ss_pred             EEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHh
Confidence            9999999999999999999885 332     235689999999999999999999999998 568899999999999999


Q ss_pred             cCCC---CccHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         147 LGKE---GEGFKVGLTGIDCAR-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       147 l~~~---~~~~~~~~~~~~~~~-~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ||..   +.||..+...++.+| +.+++.++|+++++++.+++|+++|+|||+||++||.|||+
T Consensus       312 LG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~  375 (777)
T PRK09463        312 IGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEP  375 (777)
T ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHH
Confidence            9974   889999999999999 89999999999999999999999999999999999999974

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=100.00  E-value=1.9e-39  Score=282.57  Aligned_cols=206  Identities=27%  Similarity=0.412  Sum_probs=188.5

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeC--CEEEEe-----
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES--DHWVLN-----   73 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~-----   73 (206)
                      .|++++..+..|..++...|..+|+++|+++|++++.+|++++|+++|||++|||...++|+|++++  ++|+||     
T Consensus        94 ~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~  173 (610)
T cd01150          94 YDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFT  173 (610)
T ss_pred             cCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCC
Confidence            3677777788887788889999999999999999999999999999999999999999999999988  899999     


Q ss_pred             eeeeeeeCCC-CCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303          74 GTKSWITNGY-EAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS  145 (206)
Q Consensus        74 G~k~~v~~~~-~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~  145 (206)
                      |.|+|++|+. .+++++|+|++..++++.++.+|+||.+       .|||++.+.++++|+++.+++.+.||||+||.++
T Consensus       174 g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~n  253 (610)
T cd01150         174 ATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPREN  253 (610)
T ss_pred             ceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHH
Confidence            9999999975 4999999999864445678999999963       3999999999999999999999999999999999


Q ss_pred             ccCC----------------CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-------cccccc
Q psy1303         146 VLGK----------------EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP-------ILKLQA  202 (206)
Q Consensus       146 ~l~~----------------~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~-------l~~~~~  202 (206)
                      +|+.                ++.++..+...+..+|+.+++.++|.+++|++.+++|++.|+|||+|       |.+||.
T Consensus       254 lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~  333 (610)
T cd01150         254 LLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQL  333 (610)
T ss_pred             hcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHh
Confidence            9986                56788888889999999999999999999999999999999999999       999999


Q ss_pred             ccCC
Q psy1303         203 VQLP  206 (206)
Q Consensus       203 iq~~  206 (206)
                      +|++
T Consensus       334 ~q~r  337 (610)
T cd01150         334 QQYR  337 (610)
T ss_pred             HHHH
Confidence            9975

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-39  Score=281.46  Aligned_cols=205  Identities=27%  Similarity=0.443  Sum_probs=183.1

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G   74 (206)
                      |++....+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++  +|+|+||     |
T Consensus        88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g  167 (646)
T PTZ00460         88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA  167 (646)
T ss_pred             ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence            44555567788877788899999999999999999999999999999999999999999999985  6789998     9


Q ss_pred             eeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303          75 TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV  146 (206)
Q Consensus        75 ~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~  146 (206)
                      .|+|+++ +..|++++|+|++..++++.++.+|+||..       .|||++.+..+++|+++.+++.+.||||+||.+++
T Consensus       168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl  247 (646)
T PTZ00460        168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL  247 (646)
T ss_pred             EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence            9999998 688999999999875555678999999932       49999999999999999999999999999999999


Q ss_pred             cCC------CCc----c-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc------cccccccccCC
Q psy1303         147 LGK------EGE----G-FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA------PILKLQAVQLP  206 (206)
Q Consensus       147 l~~------~~~----~-~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~------~l~~~~~iq~~  206 (206)
                      |+.      ++.    | +......+...|+.+++.++|++++|++.+++|+++|+|||+      ||.+||.+|++
T Consensus       248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~r  324 (646)
T PTZ00460        248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQK  324 (646)
T ss_pred             CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHH
Confidence            985      332    4 666777888999999999999999999999999999999997      99999999975

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=4.5e-39  Score=268.77  Aligned_cols=205  Identities=40%  Similarity=0.746  Sum_probs=183.2

Q ss_pred             CCcchhhhhhhhhhh---HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCce-eEEEEeCCEEEEeeeee
Q psy1303           2 CGGTSTILTVHNCLY---AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML-TTARKESDHWVLNGTKS   77 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~---~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~-~~a~~~~~g~~l~G~k~   77 (206)
                      |++.++.+.+|....   ...+.++|+++|+++|+++++.|+.+.|+++|||.+|+|+.... +++++.+++|+|||+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~  162 (393)
T COG1960          83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI  162 (393)
T ss_pred             CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence            566666677665222   23667899999999999999999999999999999999999987 67767566699999999


Q ss_pred             eeeCCCCCCEEEEEEEeCCC-CCCCceEEEEeecC-CCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303          78 WITNGYEAKAFVCIAQADKS-KKHKGITAFIIPMD-SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK  155 (206)
Q Consensus        78 ~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~-~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~  155 (206)
                      |+|++..+|+++|+++++++ ++++++++|+||.+ .||+++.+.|...|+++++++++.|+||+||.+++||..+.||.
T Consensus       163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~  242 (393)
T COG1960         163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK  242 (393)
T ss_pred             EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHH
Confidence            99999999999999998754 56778999999999 59999977766549999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...++..|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus       243 ~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~  293 (393)
T COG1960         243 IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFK  293 (393)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHH
Confidence            999999999999999999999999999999999999999999999999864

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=100.00  E-value=1e-38  Score=266.67  Aligned_cols=191  Identities=24%  Similarity=0.496  Sum_probs=174.6

Q ss_pred             hHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEEE
Q psy1303          16 YAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCIA   92 (206)
Q Consensus        16 ~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a   92 (206)
                      ...+|..+++++|+++|++++++|+.++++++|||+ .|+|...+.+++++++|||+|||+|.|+|++.+  +|+++|.+
T Consensus       100 ~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a  179 (394)
T cd01155         100 NMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMG  179 (394)
T ss_pred             cHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEE
Confidence            345788999999999999999999999999999997 678988899999999999999999999999965  78999999


Q ss_pred             EeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCC--CceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHH
Q psy1303          93 QADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRA--SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGM  168 (206)
Q Consensus        93 ~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~--~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (206)
                      +.+++  ++..++.+|+||++.||+++.++|+++|+++  ++++++.|+||+||++++++.++.|+......+...|+..
T Consensus       180 ~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~  259 (394)
T cd01155         180 RTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHH  259 (394)
T ss_pred             EeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHH
Confidence            87543  2335788999999999999988999999997  6789999999999999999998889988888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         169 ASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       169 aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       260 ~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~  297 (394)
T cd01155         260 CMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHW  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHH
Confidence            99999999999999999999999999999999999874

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=100.00  E-value=9e-39  Score=268.59  Aligned_cols=197  Identities=27%  Similarity=0.429  Sum_probs=179.5

Q ss_pred             cchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCC----eeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeee
Q psy1303           4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGT----NVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSW   78 (206)
Q Consensus         4 s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~----~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~   78 (206)
                      +.+..+.+|. .++..|..+|+++|+ +||+++++|+    ++.++++|||+.|||+..+.|+|+++ +|+|+|||+|+|
T Consensus       108 ~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f  185 (418)
T cd01154         108 GLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWF  185 (418)
T ss_pred             hccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEE
Confidence            4444445777 688899999988864 6999999997    89999999999999999999999999 899999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCC-CCCCceEEEEeecCCC-----CeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCc
Q psy1303          79 ITNGYEAKAFVCIAQADKS-KKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE  152 (206)
Q Consensus        79 v~~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~-----gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~  152 (206)
                      +|++ .||+++|+|+++++ ++..++++|+||++.|     |+++.+.|+++|+++++++++.|+||   .+++||.+++
T Consensus       186 ~s~a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~  261 (418)
T cd01154         186 ASAP-LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGK  261 (418)
T ss_pred             ecCc-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCc
Confidence            9999 99999999998743 4567899999999875     99999999999999999999999998   4889999999


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+..+...++..|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus       262 G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~  315 (418)
T cd01154         262 GIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRD  315 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999864

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=100.00  E-value=1.6e-38  Score=259.18  Aligned_cols=192  Identities=44%  Similarity=0.825  Sum_probs=179.4

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA   94 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~   94 (206)
                      +++..|..+|+++|+++|++++.+|+.+++++++||++|+|...+.++++++++||+|||+|+|++++..+|+++|.++.
T Consensus        43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~  122 (327)
T cd00567          43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLART  122 (327)
T ss_pred             hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEe
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303          95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI  173 (206)
Q Consensus        95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~  173 (206)
                      +++ ++..++.+|+||++.||+++.+.|+.+|+++++++.+.|+||+||++++++..+.++......+...++..++.++
T Consensus       123 ~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~  202 (327)
T cd00567         123 DEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVAL  202 (327)
T ss_pred             CCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            643 2456788999999999999999999999999999999999999999999999888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus       203 G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~  235 (327)
T cd00567         203 GAARAALDEAVEYAKQRKQFGKPLAEFQAVQFK  235 (327)
T ss_pred             HHHHHHHHHHHHHHHhccccCCccccchHHHHH
Confidence            999999999999999999999999999999864

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=100.00  E-value=1.2e-37  Score=261.30  Aligned_cols=198  Identities=28%  Similarity=0.511  Sum_probs=175.1

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWI   79 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v   79 (206)
                      +|+|+++.+.+|.  +...|..+++++|+++|++++++|+.++++++|||++|+|...+.++++++ +|+|+|||+|.|+
T Consensus        79 ~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~i  156 (407)
T cd01153          79 GDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFI  156 (407)
T ss_pred             hhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEE
Confidence            4778888776654  446678889999999999999999999999999999999999999999998 5689999999999


Q ss_pred             eCCCCC----CEEEEEEEeCC-CCCCCceEEEEeecCC-----CCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303          80 TNGYEA----KAFVCIAQADK-SKKHKGITAFIIPMDS-----PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        80 ~~~~~a----~~~~v~a~~~~-~~~~~~~~~~lvp~~~-----~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      |++.++    ++++|.++.++ .++..++.+|+||++.     ||+++.+.|+++|+++++++++.|+||+||   +++.
T Consensus       157 s~~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~  233 (407)
T cd01153         157 SAGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGE  233 (407)
T ss_pred             eCCCcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCC
Confidence            999886    57888898653 2234578899999987     899999999999999999999999999999   8888


Q ss_pred             CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccc
Q psy1303         150 EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV  203 (206)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~i  203 (206)
                      ++.|+......+...|+.++++++|+++++++.+++|+++|.+||+|+.++|.+
T Consensus       234 ~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~  287 (407)
T cd01153         234 EGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAV  287 (407)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCcccccc
Confidence            888998888889999999999999999999999999999999999996555543

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=1.3e-37  Score=260.06  Aligned_cols=188  Identities=29%  Similarity=0.555  Sum_probs=168.6

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA   94 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~   94 (206)
                      ++...|..+++++|+++||+++++|+.+.++++|||+.|||...+.+++++++|+|+|||+|.|++++..||+++|.+++
T Consensus        95 ~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~  174 (395)
T TIGR03204        95 MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRT  174 (395)
T ss_pred             hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEe
Confidence            34457888899999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303          95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI  173 (206)
Q Consensus        95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~  173 (206)
                      +++ ++..++.+|+||.+.||+++.+.....|  +++++++.|+||+||++++++..+.|+......++..|+..++  +
T Consensus       175 ~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~  250 (395)
T TIGR03204       175 DPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--V  250 (395)
T ss_pred             CCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--H
Confidence            532 2345788999999999999965555544  6788999999999999999998889999888889999988876  8


Q ss_pred             HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+++++++.+++|+++|++||+||++||.|||+
T Consensus       251 g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~  283 (395)
T TIGR03204       251 GVSKERIRRIKDLAAKVESGGKPVIEDAKFREK  283 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence            999999999999999999999999999999974

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=100.00  E-value=6e-37  Score=261.60  Aligned_cols=183  Identities=25%  Similarity=0.371  Sum_probs=168.5

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCC-------------eeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeeee
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGT-------------NVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWIT   80 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~-------------~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~   80 (206)
                      .++..+.++++++|+++|++++++|+             ++.++++|||++|||+..+.|+|+++ +|+|+|||+|+|+|
T Consensus       139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS  218 (538)
T PRK11561        139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS  218 (538)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE
Confidence            45566677789999999999999987             45689999999999999999999994 67899999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCC-----CeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK  155 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~-----gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~  155 (206)
                       +..+|+++|+|+++     +++++|+||++.|     |+++.+.++++|+++++++++.|+|+   .+++||.+++|+.
T Consensus       219 -a~~AD~~lVlArt~-----~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~  289 (538)
T PRK11561        219 -VPQSDAHLVLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIR  289 (538)
T ss_pred             -chhhCEEEEEEEEC-----CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHH
Confidence             58899999999985     3799999999988     79998899999999999999999998   4889999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+..+++..|+..++.++|+++++++.+++|+++|++||+||+++|.+|++
T Consensus       290 ~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~  340 (538)
T PRK11561        290 LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQV  340 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999863

>KOG0137|consensus

Probab=100.00  E-value=8.4e-38  Score=259.11  Aligned_cols=204  Identities=37%  Similarity=0.612  Sum_probs=191.2

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEE--eCCEEEEeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK--ESDHWVLNGTKSWI   79 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~v   79 (206)
                      |.++...+..|..+....|..+|+++|+++|||.+++|+.+++|+++||..|||.....++++.  +++.|+|||.|.|+
T Consensus       153 D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwi  232 (634)
T KOG0137|consen  153 DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWI  232 (634)
T ss_pred             cccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEE
Confidence            6778888888888888899999999999999999999999999999999999999999998886  45679999999999


Q ss_pred             eCCCCCCEEEEEEEeCCC--C--CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303          80 TNGYEAKAFVCIAQADKS--K--KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK  155 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~~--~--~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~  155 (206)
                      +|+..||+++|+|+++.+  +  ..+++++|+|+++..|++-.++..++|.+++.++.++|+++.+|.+++||.+++|++
T Consensus       233 sn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~k  312 (634)
T KOG0137|consen  233 SNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFK  312 (634)
T ss_pred             ecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchH
Confidence            999999999999998722  1  357889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303         156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL  205 (206)
Q Consensus       156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~  205 (206)
                      +...+++.+|+..++..+|.++++++++.+|+.+|+|||.+|.+|-.+|.
T Consensus       313 va~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~  362 (634)
T KOG0137|consen  313 VAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQE  362 (634)
T ss_pred             HHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHH
Confidence            99999999999999999999999999999999999999999999988774

>PLN02876 acyl-CoA dehydrogenase

Probab=100.00  E-value=5.9e-37  Score=275.76  Aligned_cols=190  Identities=24%  Similarity=0.461  Sum_probs=174.2

Q ss_pred             HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCC--CCCCEEEEEEE
Q psy1303          17 AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNG--YEAKAFVCIAQ   93 (206)
Q Consensus        17 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~a~~~~v~a~   93 (206)
                      ...|..+|+++||++||+++++|+.++++++|||+ .|+|...+.|++++++|||+|||+|.|++++  ..+|+++|.++
T Consensus       526 ~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar  605 (822)
T PLN02876        526 MEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGK  605 (822)
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEe
Confidence            35788899999999999999999999999999997 6899999999999999999999999999998  46999999999


Q ss_pred             eCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCC--ceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHH
Q psy1303          94 ADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS--STCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMAS  170 (206)
Q Consensus        94 ~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~--~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa  170 (206)
                      ++++ ++..++++|+||.+.||+++.++|+++|++++  +++++.|+||+||++++++..+.|+..+...+...|+..++
T Consensus       606 ~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa  685 (822)
T PLN02876        606 TDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCM  685 (822)
T ss_pred             cCCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHH
Confidence            7543 23456789999999999999889999999974  58899999999999999998888998888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         171 QGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       171 ~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .++|++++|++.+++|+++|++||+||.++|.+|++
T Consensus       686 ~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~  721 (822)
T PLN02876        686 RLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSD  721 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHH
Confidence            999999999999999999999999999999999874

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=100.00  E-value=2e-36  Score=251.52  Aligned_cols=198  Identities=22%  Similarity=0.281  Sum_probs=171.9

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++++.+|. .+..+|..+|+++|+++|++++.+|++++ .+++||+.++ +....+++.+++|||+|||+|.|+|
T Consensus        65 ~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is  141 (377)
T cd01163          65 ADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYST  141 (377)
T ss_pred             cCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeec
Confidence            4889999999988 56678889999999999999999999664 5899998765 5556677777889999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.+||+++|.++.++    .+..+|+||.+.||+++.+.|+.+||++++++++.|+||+||++++++.++.++. ....
T Consensus       142 ~a~~Ad~~~v~a~~~~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~  216 (377)
T cd01163         142 GALFSDWVTVSALDEE----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLL  216 (377)
T ss_pred             CCccceEEEEEEEcCC----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccc
Confidence            9999999999998643    3567899999999999988999999999999999999999999999998887764 2234


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCc----cccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRI-AFGA----PILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~-~~g~----~l~~~~~iq~~  206 (206)
                      +..+++.+++.++|+++++++.+++|+++|+ +||+    ++.++|.+|++
T Consensus       217 ~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~  267 (377)
T cd01163         217 TAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQV  267 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHH
Confidence            5567899999999999999999999999995 7876    57889988864

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3e-36  Score=262.15  Aligned_cols=201  Identities=28%  Similarity=0.449  Sum_probs=175.3

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCC-EEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~v~   80 (206)
                      |+++++.+..+. .+...|..+|+++||++||+++++|++++++++|||+.|||+..+.|+|++++| +|+|||+|.|||
T Consensus       143 ~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt  221 (622)
T PTZ00456        143 NWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFIS  221 (622)
T ss_pred             chHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEec
Confidence            344443333443 456789999999999999999999999999999999999999999999999987 499999999999


Q ss_pred             CCCCC----CEEEEEEEeCCC-CCCCceEEEEeecCC----------CCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303          81 NGYEA----KAFVCIAQADKS-KKHKGITAFIIPMDS----------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS  145 (206)
Q Consensus        81 ~~~~a----~~~~v~a~~~~~-~~~~~~~~~lvp~~~----------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~  145 (206)
                      ++.++    ++++|+|+++++ ++..++++|+||++.          +|+++.+..+++|+++++++.+.|+|   +.++
T Consensus       222 ~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~  298 (622)
T PTZ00456        222 AGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGY  298 (622)
T ss_pred             CCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHh
Confidence            99874    678999998743 456789999999865          36777778899999999999999999   3689


Q ss_pred             ccCCCCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------------CccccccccccCC
Q psy1303         146 VLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF------------GAPILKLQAVQLP  206 (206)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~------------g~~l~~~~~iq~~  206 (206)
                      +||.++.|+..++.+++..|+.+++.++|+++++++.+++|+++|+||            ++||.++|.||++
T Consensus       299 llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~  371 (622)
T PTZ00456        299 LIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQN  371 (622)
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999984            6788999988863

>PLN02443 acyl-coenzyme A oxidase

Probab=100.00  E-value=5.6e-36  Score=261.60  Aligned_cols=196  Identities=23%  Similarity=0.347  Sum_probs=172.1

Q ss_pred             hhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----eeeeeee
Q psy1303           8 ILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----GTKSWIT   80 (206)
Q Consensus         8 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~   80 (206)
                      .+.+|.+++...|..+|+++|+++|++++.+|++++|+++|||++|||+..++|+|+++  +|+|+||     |.|+|++
T Consensus        98 ~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig  177 (664)
T PLN02443         98 YTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPG  177 (664)
T ss_pred             eeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeec
Confidence            45567767778899999999999999999999999999999999999999999999988  6789998     9999999


Q ss_pred             CC-CCCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCC---CCCCceeeEEEeceeeCCCCccCC
Q psy1303          81 NG-YEAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        81 ~~-~~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g---~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      ++ ..|++++|+|++..++++.++.+|+||.+       .|||++.+.++++|   +++.+++.+.||||+||.+++|+.
T Consensus       178 ~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~  257 (664)
T PLN02443        178 GLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR  257 (664)
T ss_pred             CCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence            97 68999999999865555678999999975       79999999999999   556889999999999999999985


Q ss_pred             CC------ccH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--ccccc
Q psy1303         150 EG------EGF------KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPIL--KLQAV  203 (206)
Q Consensus       150 ~~------~~~------~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~--~~~~i  203 (206)
                      .+      ..+      ......+...|+.+++.++|.+++|++.+++|++.|+|||+|++  ++|.|
T Consensus       258 ~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii  325 (664)
T PLN02443        258 LSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVI  325 (664)
T ss_pred             ccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhh
Confidence            32      222      23345677889999999999999999999999999999999987  77776

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=100.00  E-value=1e-35  Score=247.60  Aligned_cols=199  Identities=28%  Similarity=0.478  Sum_probs=169.8

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+..|. .+...|..+++++|+++||+++++|+.+.++++|||+.|+|...+.++++++++||+|||+|.|+|
T Consensus        78 ~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it  156 (380)
T cd01152          78 AGAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTS  156 (380)
T ss_pred             cCCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEc
Confidence            3677777633333 455678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          81 NGYEAKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      ++.++|+++|.++.+++ ++..++.+|+||++.||+++.+.|+.+|  +++++.+.|+||+||.+++++.+++++..+..
T Consensus       157 ~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~  234 (380)
T cd01152         157 GAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT  234 (380)
T ss_pred             CccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence            99999999999997643 2345788999999999999988898887  56789999999999999999999899988777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...|+..++..    ..+++.+++|+++|.+||+||.++|.||++
T Consensus       235 ~l~~~r~~~~~~~----~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~  277 (380)
T cd01152         235 TLNFERVSIGGSA----ATFFELLLARLLLLTRDGRPLIDDPLVRQR  277 (380)
T ss_pred             HHHhcccccchhh----hHHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence            7777777765554    444556678888889999999999999874

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>KOG1469|consensus

Probab=100.00  E-value=5.4e-35  Score=222.82  Aligned_cols=187  Identities=27%  Similarity=0.569  Sum_probs=173.5

Q ss_pred             HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEEEE
Q psy1303          17 AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCIAQ   93 (206)
Q Consensus        17 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~   93 (206)
                      .+.|.+||++||+.+||.++.+|++..||++|||+ .+||+.++++..++++|.|++||+|+|+||+.+  +...+++.+
T Consensus        89 MEvl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGk  168 (392)
T KOG1469|consen   89 MEVLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGK  168 (392)
T ss_pred             eeehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecc
Confidence            35789999999999999999999999999999999 789999999999999999999999999999865  667888899


Q ss_pred             eCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCc--eeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHH
Q psy1303          94 ADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS--TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMA  169 (206)
Q Consensus        94 ~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~--~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~a  169 (206)
                      +++.  +.+...++.+||+++|||++.++...+|+...+  ..+++|+||+||..+++-.++.||++.+..+..+|+.-|
T Consensus       169 t~~~~~~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHc  248 (392)
T KOG1469|consen  169 TDNTSASRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHC  248 (392)
T ss_pred             cCCCccchhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHH
Confidence            8753  467888999999999999999999999998775  678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCccccccccc
Q psy1303         170 SQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV  203 (206)
Q Consensus       170 a~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~i  203 (206)
                      +-.+|.++++++...+.+.+|..||++|.++..+
T Consensus       249 MRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~  282 (392)
T KOG1469|consen  249 MRLIGLAERALQLMKERALSRIAFGKKLVQHGSV  282 (392)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchH
Confidence            9999999999999999999999999999887654

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.97  E-value=2.1e-31  Score=220.92  Aligned_cols=190  Identities=18%  Similarity=0.237  Sum_probs=154.5

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+|+++++..+. .....+..+++++|++.|++.. ++...++            ..+.+++++++|||+|||+|.|+|
T Consensus        65 ~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~------------~~~~t~A~~~~~gy~lnG~K~~it  130 (370)
T cd01159          65 ACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDGP-DTLLAGS------------YAPGGRAERVDGGYRVSGTWPFAS  130 (370)
T ss_pred             hCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCCC-CceEEee------------ecCCceeEEeCCeEEEeccccCcc
Confidence            4888888877766 6667788889999998887742 1111111            124568889999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCC------ccH
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG------EGF  154 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~------~~~  154 (206)
                      ++.++|+++|.++++++++..++++|+||++  ||++.+.|+.+||++++++.+.|+||+||++++|+..+      .++
T Consensus       131 ~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~  208 (370)
T cd01159         131 GCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGG  208 (370)
T ss_pred             CCCcCceeEeeeECCCCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCC
Confidence            9999999999999754435567899999987  99999999999999999999999999999999997542      231


Q ss_pred             H---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---CccccccccccCC
Q psy1303         155 K---VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF---GAPILKLQAVQLP  206 (206)
Q Consensus       155 ~---~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~---g~~l~~~~~iq~~  206 (206)
                      .   .....+..+++.++++++|+++++++.+++|+++|.+|   |+|++++|.+|++
T Consensus       209 ~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~  266 (370)
T cd01159         209 STPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLR  266 (370)
T ss_pred             CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHH
Confidence            1   12234567889999999999999999999999999987   7899999999863

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.97  E-value=3.8e-30  Score=218.71  Aligned_cols=171  Identities=25%  Similarity=0.337  Sum_probs=148.1

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~   80 (206)
                      |++....+..|..++...|..+|+++||++|||++++|+.+++++++| +.|||+..+.|+++++ +|+|+|||+|.|+ 
T Consensus        95 ~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-  172 (520)
T PTZ00457         95 CDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-  172 (520)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-
Confidence            445555455665456678888999999999999999999999999988 8999999999999986 5579999999966 


Q ss_pred             CCCCCCEEEEEEEeCC----CCC---CCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCcc
Q psy1303          81 NGYEAKAFVCIAQADK----SKK---HKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEG  153 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~----~~~---~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~  153 (206)
                      ++..||+++|+|++++    +.+   .+++++|+||++.||+++..            +++.||||  |.+++||.+++|
T Consensus       173 ~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G  238 (520)
T PTZ00457        173 FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEG  238 (520)
T ss_pred             cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCch
Confidence            8999999999999752    111   24789999999999999942            69999997  999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1303         154 FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG  188 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~  188 (206)
                      |..+...++..|+.+++.++|+++++++.+++|++
T Consensus       239 ~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~  273 (520)
T PTZ00457        239 FKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA  273 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988999999999999999999999999999986

>KOG0135|consensus

Probab=99.94  E-value=2e-26  Score=190.44  Aligned_cols=205  Identities=29%  Similarity=0.529  Sum_probs=181.8

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----   73 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----   73 (206)
                      .|.|++.=+..|..++...+..+|++.-++ |+..+-.-++++|||+||.++|||...++|+|+.+  .+.|++|     
T Consensus       117 yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~  195 (661)
T KOG0135|consen  117 YDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFS  195 (661)
T ss_pred             cCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHH
Confidence            488999999999999999999999988666 99999999999999999999999999999999988  6789999     


Q ss_pred             eeeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeecCC-------CCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303          74 GTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS  145 (206)
Q Consensus        74 G~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~-------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~  145 (206)
                      ..|+|+.| +.+|.+.+|+|+..-.+.+.|+..|+||...       |||.+.+.-.+.|+.|.+++.+.|+|++||.++
T Consensus       196 A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRen  275 (661)
T KOG0135|consen  196 AIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPREN  275 (661)
T ss_pred             HHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHH
Confidence            46999999 5679999999998744677899999998643       799999999999999999999999999999999


Q ss_pred             ccCCC----------------CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-------ccccccc
Q psy1303         146 VLGKE----------------GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQA  202 (206)
Q Consensus       146 ~l~~~----------------~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~-------~l~~~~~  202 (206)
                      ++-..                ++.|-+....+..+|+.++...+|.++-++.+|++|...|+|||.       ||.++|.
T Consensus       276 LLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~  355 (661)
T KOG0135|consen  276 LLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPS  355 (661)
T ss_pred             HhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechh
Confidence            98432                233445667788999999999999999999999999999999994       6778888


Q ss_pred             ccCC
Q psy1303         203 VQLP  206 (206)
Q Consensus       203 iq~~  206 (206)
                      .|+|
T Consensus       356 qQ~R  359 (661)
T KOG0135|consen  356 QQYR  359 (661)
T ss_pred             HHHH
Confidence            8765

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=99.87  E-value=1.5e-21  Score=165.51  Aligned_cols=173  Identities=21%  Similarity=0.220  Sum_probs=140.7

Q ss_pred             HHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeCCCC
Q psy1303          27 KQKETYLPSFVDGTNVGCFGISEPGSG--------SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSK   98 (206)
Q Consensus        27 ~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~   98 (206)
                      +-.++|+..+.+.++..+-+++.|...        .|+...-...++++|||+|||.|.|+|++ .+|+++|+++++..+
T Consensus       127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~  205 (477)
T TIGR02309       127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA  205 (477)
T ss_pred             HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence            456678999999999999999987521        23333334566789999999999999997 999999999876432


Q ss_pred             CC-C--ceEEEEeecCCCCeeeccccccCCCCCC-----------ceeeEEEeceeeCCCCc--cCCC---CccHHHHHH
Q psy1303          99 KH-K--GITAFIIPMDSPGLSLGKKEDKLGIRAS-----------STCNVILEDVKIPLDSV--LGKE---GEGFKVGLT  159 (206)
Q Consensus        99 ~~-~--~~~~~lvp~~~~gv~~~~~~~~~g~~~~-----------~~~~v~f~~v~vp~~~~--l~~~---~~~~~~~~~  159 (206)
                      +. +  -.+.|+||.++||+++....+.+|.++.           ..+.+.||||+||++++  +|..   +.+|.... 
T Consensus       206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~-  284 (477)
T TIGR02309       206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG-  284 (477)
T ss_pred             ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-
Confidence            22 2  3689999999999999887788888766           66999999999999999  7776   55554322 


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                          .++..++.++|.+..+++.++.+++. .+++.++.++|.||++
T Consensus       285 ----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~k  326 (477)
T TIGR02309       285 ----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEK  326 (477)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHH
Confidence                23677999999999999999999999 9999999999999863

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>KOG0136|consensus

Probab=99.84  E-value=1.4e-20  Score=158.92  Aligned_cols=201  Identities=24%  Similarity=0.355  Sum_probs=167.1

Q ss_pred             hhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeC--CEEEEe-----eeeee
Q psy1303           6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES--DHWVLN-----GTKSW   78 (206)
Q Consensus         6 a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~   78 (206)
                      +..+..|..++...|..-+++||.++|+.+--..++++++|.||.++|+++.+.+|+|+.+.  +.|+||     ..|+|
T Consensus       108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW  187 (670)
T KOG0136|consen  108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW  187 (670)
T ss_pred             CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence            45678899899999999999999999999999999999999999999999999999999874  579998     68999


Q ss_pred             eeCCC-CCCEEEEEEEeCCCCCCCceEEEEeecCC-------CCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCC
Q psy1303          79 ITNGY-EAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE  150 (206)
Q Consensus        79 v~~~~-~a~~~~v~a~~~~~~~~~~~~~~lvp~~~-------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~  150 (206)
                      ..+.+ .+.|.+|.|+..-++...+...|+||..+       |||++.+.-+++|+.+.+++.+.||||+||.++++..-
T Consensus       188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~  267 (670)
T KOG0136|consen  188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRH  267 (670)
T ss_pred             CCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhh
Confidence            99954 58899999999766677888999999643       79999999999999999999999999999999998532


Q ss_pred             C----ccH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------ccccccccccCC
Q psy1303         151 G----EGF-------KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-------APILKLQAVQLP  206 (206)
Q Consensus       151 ~----~~~-------~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g-------~~l~~~~~iq~~  206 (206)
                      .    +|.       ......+-..|..+.....-....|+.+|++|..-|+|+.       .-|.|||+.|+|
T Consensus       268 ~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~r  341 (670)
T KOG0136|consen  268 AKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYR  341 (670)
T ss_pred             heecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHH
Confidence            1    121       1111222345666677777777888999999999999985       237788888864

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.69  E-value=1.5e-16  Score=94.76  Aligned_cols=52  Identities=44%  Similarity=0.774  Sum_probs=47.0

Q ss_pred             EEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeC
Q psy1303          44 CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD   95 (206)
Q Consensus        44 ~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~   95 (206)
                      ++|+|||++|+|+..+++++++++++|+|||+|.|++++..||+++|+||++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d   52 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD   52 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence            5899999999999999999999999999999999999999999999999973

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=99.08  E-value=1e-09  Score=86.23  Aligned_cols=121  Identities=20%  Similarity=0.316  Sum_probs=78.5

Q ss_pred             HHHHhhhhHHhcCCeeeEEEeeCCCC--C-----CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeC-CCC
Q psy1303          27 KQKETYLPSFVDGTNVGCFGISEPGS--G-----SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD-KSK   98 (206)
Q Consensus        27 ~q~~~~l~~i~~g~~~~~~a~te~~~--g-----~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~-~~~   98 (206)
                      +-.++|+..+.+.++..+-+++.|..  +     .|....--..+++++|.+++|.|...|++..+|.++|.-... ...
T Consensus       123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~  202 (264)
T PF11794_consen  123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG  202 (264)
T ss_dssp             HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred             HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence            44567889999999999999999862  1     112222334556789999999999999999999999987654 233


Q ss_pred             CCCceEEEEeecCCCCeeeccccccC-----CCC-------CCceeeEEEeceeeCCCCcc
Q psy1303          99 KHKGITAFIIPMDSPGLSLGKKEDKL-----GIR-------ASSTCNVILEDVKIPLDSVL  147 (206)
Q Consensus        99 ~~~~~~~~lvp~~~~gv~~~~~~~~~-----g~~-------~~~~~~v~f~~v~vp~~~~l  147 (206)
                      +.+....|.||.++||+++.-.....     ..+       .-.-+-+.||||+||+|+++
T Consensus       203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF  263 (264)
T PF11794_consen  203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF  263 (264)
T ss_dssp             CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred             CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence            45666789999999999874221111     111       11237889999999999875

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.95  E-value=2.9e-08  Score=82.80  Aligned_cols=122  Identities=17%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             HHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEE-EeCCC
Q psy1303          27 KQKETYLPSFVDGTNVGCFGISEPGSG--------SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIA-QADKS   97 (206)
Q Consensus        27 ~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a-~~~~~   97 (206)
                      +-..+|+.++.+.++..+-|++.|...        .|+...--..+..++|.+++|.|..+|++..+|.++|+. +.-..
T Consensus       131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~  210 (493)
T COG2368         131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE  210 (493)
T ss_pred             HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence            556679999999999999999987521        222222234456689999999999999999999999983 32222


Q ss_pred             CCCCceEEEEeecCCCCeeecccc---ccCCCC------------CCceeeEEEeceeeCCCCccC
Q psy1303          98 KKHKGITAFIIPMDSPGLSLGKKE---DKLGIR------------ASSTCNVILEDVKIPLDSVLG  148 (206)
Q Consensus        98 ~~~~~~~~~lvp~~~~gv~~~~~~---~~~g~~------------~~~~~~v~f~~v~vp~~~~l~  148 (206)
                      ++.+-...|.+|.++||+++.-..   ..-|+.            .-.-+-+.||||+||+|+++-
T Consensus       211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~  276 (493)
T COG2368         211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI  276 (493)
T ss_pred             CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence            334556689999999998873211   111111            112356899999999999874

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.94  E-value=1.2e-08  Score=87.32  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             HHHHhhhhHHhcCCeeeEEEeeCCCCCC------CccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEE-EEEeC-CCC
Q psy1303          27 KQKETYLPSFVDGTNVGCFGISEPGSGS------DAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVC-IAQAD-KSK   98 (206)
Q Consensus        27 ~q~~~~l~~i~~g~~~~~~a~te~~~g~------~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v-~a~~~-~~~   98 (206)
                      +-.++|+..+.+.++..+-+++.|...-      +....-...+++++|.+++|.|...|++..+|.++| ..... -.+
T Consensus       136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~  215 (519)
T TIGR02310       136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD  215 (519)
T ss_pred             HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence            4566789999999999999999875211      122223455667899999999999999999999998 33321 012


Q ss_pred             CCCceEEEEeecCCCCeeeccccc-c-------CCCC-------CCceeeEEEeceeeCCCCccC
Q psy1303          99 KHKGITAFIIPMDSPGLSLGKKED-K-------LGIR-------ASSTCNVILEDVKIPLDSVLG  148 (206)
Q Consensus        99 ~~~~~~~~lvp~~~~gv~~~~~~~-~-------~g~~-------~~~~~~v~f~~v~vp~~~~l~  148 (206)
                      +.+-...|.||.++||+++.-... .       ...+       +-.-+-+.||||+||+|+++-
T Consensus       216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~  280 (519)
T TIGR02310       216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI  280 (519)
T ss_pred             CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence            334556799999999998742111 0       0011       112367899999999999984

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=98.49  E-value=1.6e-07  Score=67.89  Aligned_cols=55  Identities=38%  Similarity=0.667  Sum_probs=52.5

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL  205 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~  205 (206)
                      ++||.++...+...|+.+++.++|.++.+++.+++|+++|.+||+|+.++|.+|+
T Consensus         1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~   55 (150)
T PF00441_consen    1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRR   55 (150)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHH
Confidence            4789999999999999999999999999999999999999999999999999875

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=97.59  E-value=3.6e-05  Score=52.80  Aligned_cols=39  Identities=38%  Similarity=0.554  Sum_probs=34.8

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGT   40 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~   40 (206)
                      |+++++.+.+|..+++..|..+|+++|+++|++++++|+
T Consensus        75 ~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   75 DASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             THHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             cccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            667888899987677789999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=94.73  E-value=0.033  Score=38.98  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             hhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCee
Q psy1303           6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNV   42 (206)
Q Consensus         6 a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~   42 (206)
                      ..-+.+|.+++...|...|++||+++|+|...+.+++
T Consensus        89 ~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii  125 (125)
T PF14749_consen   89 GLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII  125 (125)
T ss_dssp             --THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred             CchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence            3456789989999999999999999999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		3e-69
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		2e-68
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		4e-47
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		3e-44
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		2e-42
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		9e-39
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		4e-38
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		5e-38
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		1e-37
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		1e-36
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		2e-36
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		5e-35
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		2e-34
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		2e-34
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		3e-34
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-33
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		2e-33
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		2e-33
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		2e-32
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		2e-32
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		2e-32
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		1e-31
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		5e-30
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		6e-29
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		7e-29
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		1e-28
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		1e-28
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		1e-28
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		3e-27
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		1e-26
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		6e-26
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		6e-26
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		7e-26
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		6e-25
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		7e-25
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		1e-18
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		4e-16
3m9v_A	439	X-Ray Structure Of A Kijd3 In Complex With Dtdp Len		3e-13
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		9e-13
3mkh_A	438	Podospora Anserina Nitroalkane Oxidase Length = 438		2e-11
3djl_A	541	Crystal Structure Of Alkylation Response Protein E.		2e-09
3mxl_A	395	Crystal Structure Of Nitrososynthase From Micromono		3e-07
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		2e-05
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		7e-04

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 156/205 (76%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    
Sbjct: 84  GCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAS 143
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR+E D WVLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKK
Sbjct: 144 TTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKK 203
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIRASST N+I ED +IP +++LG+ G GFK+ +  +D  RIG+ASQ +GIAQA+ 
Sbjct: 204 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 263
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA++YA  R AFGAP+ KLQ +Q 
Sbjct: 264 DCAVKYAENRHAFGAPLTKLQNIQF 288

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 151/205 (73%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 80  GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 139
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++K I+AF++PM +PGL+LGKK
Sbjct: 140 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKK 199
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
           DCA+ YA  R+AFGAP+ KLQ +Q 
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQF 284

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 135/203 (66%), Gaps = 1/203 (0%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G +  L+    L A  I +FGT+ QKE +L   V+GT +G FG++EP +G+DA+   T A
Sbjct: 85  GVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIA 144
Query: 64  RKESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKED 122
            K  D  + LNG+K +ITNG  A  ++  A  DKSK + GITAFI+   +PG + GKKED
Sbjct: 145 TKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKED 204
Query: 123 KLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDC 182
           K+GI  S T  ++ +DVK+P +++LG+EG+GFK+ +  +D  RIG+A+Q +GIA+AA   
Sbjct: 205 KMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALAD 264
Query: 183 AMEYAGKRIAFGAPILKLQAVQL 205
           A+EY+ +R+ FG P+ K Q++  
Sbjct: 265 AVEYSKQRVQFGKPLCKFQSISF 287

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Query: 11  VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
           + N L   LI K GT++QK TYLP       VG F +SE G+GSD+  + T A KE D++
Sbjct: 113 IQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYY 171
Query: 71  VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
           VLNG+K WI++   A  F+ +A  D +  +KGIT+F++  D+PGL +GK E+KLG+RASS
Sbjct: 172 VLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASS 231
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKR 190
           TC +  E+VK+P  ++LG+ G G+K  +  ++  RIG+A+Q +G+AQ  FD  + Y  +R
Sbjct: 232 TCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKER 291
Query: 191 IAFGAPILKLQAVQ 204
           I FG  +   Q +Q
Sbjct: 292 IQFGKRLFDFQGLQ 305

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 118/182 (64%)
Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
           GT++QKE +L    +   +  F +SEPG+GSDAA + T A ++ DH+VLNGTK WI+NG 
Sbjct: 101 GTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160
Query: 84  EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
           EA+  V  A  +   +HKG+ A ++   +PG    K   K+G RAS T  ++ EDVK+P+
Sbjct: 161 EAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPV 220
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
           ++ LG+EGEGFK+ +  ++  RI +A+  +G+A+ A D A +YA +R AFG PI   QA+
Sbjct: 221 ENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI 280
Query: 204 QL 205
           Q 
Sbjct: 281 QF 282

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 125/199 (62%), Gaps = 5/199 (2%)
Query: 5   TSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR 64
            + I++V + L   ++ +FG++ QK  YL     G  +G F ++EP +GSDA ++   AR
Sbjct: 81  VAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEAR 140
Query: 65  KESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKL 124
           +    +VLNG KSWIT+   A  +V +A+ +K     GI+AF++   +PGLS G+ E+K+
Sbjct: 141 RVKGGFVLNGVKSWITSAGHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKM 195
Query: 125 GIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAM 184
           G+ A+ T  V LE+V +P +++LG+EG G    L G+D  R+G+A+Q +GIA+ AF+ A 
Sbjct: 196 GLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAK 255
Query: 185 EYAGKRIAFGAPILKLQAV 203
            YA +R  FG  + + QA+
Sbjct: 256 AYAEEREQFGKKLKEHQAI 274

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           H+ L    + + G + QKE YLP  + G  +G   +SEP +GSD  +M   A K+ +H++
Sbjct: 100 HSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYI 159
Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSK--KHKGITAFIIPMDSPGLSLGKKEDKLGIRAS 129
           LNG K WITNG +A   +  A+ D +     +GITAFI+    PG S  KK DKLG+R S
Sbjct: 160 LNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGS 219
Query: 130 STCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGK 189
           +TC +I ED KIP  ++LG E +G  V ++G+D  R+ +A   +G+ QA  D  + Y   
Sbjct: 220 NTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHV 279
Query: 190 RIAFGAPILKLQAVQ 204
           R AFG  I   Q +Q
Sbjct: 280 REAFGQKIGHFQLMQ 294

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA--AN 58
           G GG S     H  +    +  FGT++QK  YLP    G  +  + ++EPGSGSDA  A 
Sbjct: 102 GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAK 161
Query: 59  MLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
              T  ++  H++LNG K WI+N   A  F   A+ D        TAF++  D+PGLS G
Sbjct: 162 TRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDGEH----FTAFLVERDTPGLSFG 217
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
            +E K+GI+ASST  VILEDVK+P+++VLG+ G+G K+    ++  R  + +  +G A+ 
Sbjct: 218 PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKR 277
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
           A + + +YA +R+ FG PI +   +Q
Sbjct: 278 ALELSAQYATQRVQFGRPIGRFGLIQ 303

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 4/207 (1%)
Query: 3   GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTT 62
           G  +  +  HN L  G I   G++ QKE +LP    G  +G +G++EPGSGSDAA + T 
Sbjct: 83  GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTK 142
Query: 63  ARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK----SKKHKGITAFIIPMDSPGLSLG 118
           A K    W LNGTK +IT G  A  +V +A+ D      +KH+GI+AF       GL +G
Sbjct: 143 AEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVG 202
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
           +KE+KLG+ AS T  +ILED+ +P +++LG+ G+GF   L  +D  RIG+A+  +G+ QA
Sbjct: 203 RKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQA 262
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQL 205
           A D A+ YA  R AFG PI + + V  
Sbjct: 263 ALDYALAYAKGREAFGRPIAEFEGVSF 289

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 121/195 (62%), Gaps = 3/195 (1%)
Query: 9   LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD 68
           ++VH+     L+  FGT++QK+ +LP  + G  +G + +SEP +GSDAA +   A     
Sbjct: 98  VSVHSLSSHPLL-VFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDG 156
Query: 69  HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
            +V+NG+KSWIT+G +A  +   A+  +  +  G++ F++P D PGLS GK E+K+G+ A
Sbjct: 157 GYVINGSKSWITHGGKADFYTLFARTGEGSR--GVSCFLVPADQPGLSFGKPEEKMGLHA 214
Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
             T +   ++ +I  D  +G+EG+G ++  + +D  R+G+A+   G+AQAA D A+ YA 
Sbjct: 215 VPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYAN 274
Query: 189 KRIAFGAPILKLQAV 203
           +R AFG  I+  Q +
Sbjct: 275 ERTAFGRKIIDHQGL 289

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 6   STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
           S I  V+     GLI + G+++ K+  LP+   G  +  + +SE  +GSDAA+M T A  
Sbjct: 98  SLIPAVNKLGTMGLILR-GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVA 156
Query: 66  ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
           + D W+LNG+K WITNG ++  +  +A  D  K   GI+AF++  D  G ++G KE KLG
Sbjct: 157 DGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLG 216
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
           I+ S T  +  E+ +IP D ++G+ G GFK  L  +D  R  + +Q +GIAQ A D A+ 
Sbjct: 217 IKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIA 276
Query: 186 YAGKRIAFGAPILKLQAVQL 205
           Y  +R  FG P+   Q VQ 
Sbjct: 277 YTKERKQFGRPVSDNQGVQF 296

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 9   LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD 68
           + V  C Y   I  +G++  K+ Y+P       +G FGI+EP +GSD   M +TA  + D
Sbjct: 92  MEVLGCAYT--ILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGD 149
Query: 69  HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFII-PMDSPGLSLGKKEDKLGIR 127
           HW+LNG+K+WI+N  +A   +  A  DK+   +G++AF+I P + PG+     E KLG  
Sbjct: 150 HWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSH 208
Query: 128 ASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYA 187
           AS T  + L++VK+P +++LGK G+G ++    ++  R+  A+ G+G+AQA  D A++Y 
Sbjct: 209 ASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYC 268
Query: 188 GKRIAFGAPILKLQAVQ 204
            +R  FG PI   Q  Q
Sbjct: 269 NERRQFGKPIGDFQMNQ 285

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA-ANMLTT 62
           G  + ++V + L    I  +G+++QK  +LP    G  VGCFG++EP  GSD   NM T 
Sbjct: 88  GLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTR 147
Query: 63  ARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKED 122
           AR+E D WVLNGTK WITNG  A   V  A+ +  +    +  F++P D+PG    + + 
Sbjct: 148 ARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKR 203
Query: 123 KLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDC 182
           K+ +RAS T  ++LE+V++P +S+   +  G K  L+ +  AR G+A   +G  +A ++ 
Sbjct: 204 KMSLRASVTSELVLEEVRVP-ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEE 262
Query: 183 AMEYAGKRIAFGAPILKLQAVQ 204
           A+ +A  R  FG P+ K Q VQ
Sbjct: 263 AVAFAKSRSTFGEPLAKKQLVQ 284

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 11  VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
           +HN +    I  +GT++QK+ +LP  V G  +    ++EPG+GSD AN+ TTA K+ D++
Sbjct: 93  LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYY 152
Query: 71  VLNGTKSWITNGYEAKAFVCIAQADKSKK--HKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
           ++NG K++ITNG  A   V   + D   K  H+GI+  ++  D+PG + G+K +K+G+ A
Sbjct: 153 IVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHA 212
Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
             T  +  +D K+P  ++LG+EG+GF   +  +   R+ +A      A+  F    +Y  
Sbjct: 213 QDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVK 272
Query: 189 KRIAFGAPILKLQAVQL 205
           +R AFG  + + Q VQ 
Sbjct: 273 QRTAFGKRVSEFQTVQF 289

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T+  +++HN + A +I+ FG ++Q+  + P          + ++EPGSGSDAA++L
Sbjct: 93  GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLL 151
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T+A+K+ DH++LNG+K++I+   E+  +V + +       KGI+  ++   +PGLS GKK
Sbjct: 152 TSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGP-KGISCIVVEKGTPGLSFGKK 210
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E K+G  +  T  VI ED  +P+ + +G EG+GF + + G++  RI +AS  +G A A+ 
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
               ++   R  FG P+   Q +Q 
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQF 295

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +   N L    I   G  +QK+ YL    +   +  + ++EPG+GSD A + 
Sbjct: 90  GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+  +K  T FI+  D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDVK+P ++VL  +G GFKV +   D  R  +A+  +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  +++ QA+  
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAISF 296

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +   N L    I   G  +QK+ YL    +   +  + ++EPG+GSD A + 
Sbjct: 90  GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+  +K  T FI+  D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDVK+P ++VL  +G GFKV +   D  R  +A+  +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  +++ QA+  
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAISF 296

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +   N L    I   G  +QK+ YL    +   +  + ++EPG+GSD A + 
Sbjct: 115 GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 173
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+  +K  T FI+  D+PG+ +
Sbjct: 174 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 233
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDVK+P ++VL  +G GFKV +   D  R  +A+  +G+AQ
Sbjct: 234 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQ 293
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  +++ QA+  
Sbjct: 294 RALDEATKYALERKTFGKLLVEHQAISF 321

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +  +      LI   G  +Q++ YL    +   +  + ++EPG+GSD A + 
Sbjct: 90  GCTGVQTAIEANTLGQVPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+   K  T FI+  D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDV++P ++VL  EG GFK+ +   D  R  +A+  +G+AQ
Sbjct: 209 GRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  + + Q +  
Sbjct: 269 RALDEATKYALERKTFGKLLAEHQGISF 296

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +  +      LI   G  +Q++ YL    +   +  + ++EPG+GSD A + 
Sbjct: 80  GCTGVQTAIEANTLGQVPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 138
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+   K  T FI+  D+PG+ +
Sbjct: 139 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQI 198
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDV++P ++VL  EG GFK+ +   D  R  +A+  +G+AQ
Sbjct: 199 GRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQ 258
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
            A D A +YA +R  FG  + + Q +  
Sbjct: 259 RALDEATKYALERKTFGKLLAEHQGISF 286

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G  G  + ++V   L    I ++G+++QK  +LP    G  +GCFG++EP  GS+ A M 
Sbjct: 99  GDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMR 158
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T AR++   W+LNGTK WITNG  A      AQ D      GI  F++P D+PG +  + 
Sbjct: 159 TRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEI 213
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             KL +RAS T  ++L++V++P  + L    EG    L+ ++ AR G+    +G A+ + 
Sbjct: 214 HRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSAPLSCLNEARFGIVFGALGAARDSL 272
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           +  + Y   R  F  P+   Q  Q
Sbjct: 273 ETTIAYTQSREVFDKPLSNYQLTQ 296

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G  G  ++++V   L    I+ FG+ +QK+ +LP    G  +GCFG++EP  GSD A M 
Sbjct: 104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMR 163
Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A +  D W+L GTK WITNG  A   V  A+ D     +GI  F++P D+PG +    
Sbjct: 164 TRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTI 218
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           + K+ +RAS T  ++L+ V++P DS            L  ++ AR G+    +G A+   
Sbjct: 219 KSKMSLRASVTSELVLDGVRLP-DSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCL 277
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           + A+ YA  R  F  PI   Q  Q
Sbjct: 278 ETALAYACSREQFDRPIGGFQLTQ 301

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 6/184 (3%)
Query: 23  FGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESDHWVLNGTKSWIT 80
           FG ++QK+ YLP    G  +  + ++EPGSGSDA    TTAR   E  H+VLNG K WIT
Sbjct: 129 FGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWIT 188
Query: 81  NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVK 140
           N   A  F+  A+ D        +AFI+  D  G+S   +E K GI+ SST  +ILED  
Sbjct: 189 NSAFADVFIVYAKIDGEH----FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDAL 244
Query: 141 IPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKL 200
           +P +++LG+ G+G  +    ++  R  +    +G A+ A + + +YA +R  F  PI + 
Sbjct: 245 VPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARF 304
Query: 201 QAVQ 204
             +Q
Sbjct: 305 PLIQ 308

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G    L  H  +    I  FGTK QKE YLP    G  V  F ++EP SGSDAA++ T+A
Sbjct: 105 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSA 164
Query: 64  RKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSPGLS 116
                  ++ LNG+K WI+NG  A  F   A+   +    G     ITAF++     G++
Sbjct: 165 VPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT 224
Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
            G  E K+GI+AS+T  V  + V++P ++VLG+ G GFKV +  ++  R GMA+   G  
Sbjct: 225 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTM 284
Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           +     A+++A  R  FG  I     +Q
Sbjct: 285 RGIIAKAVDHATNRTQFGEKIHNFGLIQ 312

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G    L  H  +    I  FGTK QKE YLP    G  V  F ++EP SGSDAA++ T+A
Sbjct: 125 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSA 184
Query: 64  RKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSPGLS 116
                  ++ LNG+K WI+NG  A  F   A+   +    G     ITAF++     G++
Sbjct: 185 VPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT 244
Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
            G  E K+GI+AS+T  V  + V++P ++VLG+ G GFKV +  ++  R GMA+   G  
Sbjct: 245 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTM 304
Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           +     A+++A  R  FG  I     +Q
Sbjct: 305 RGIIAKAVDHATNRTQFGEKIHNFGLIQ 332

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  ++++V + L    I +FG+  QKE YLP    G  +GCFG++EP  GSD  +M+T A
Sbjct: 99  GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 158
Query: 64  RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
           RK    + L+G+K WITN   A  FV  A+ D+  + + I  FI+     GLS      K
Sbjct: 159 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 217
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
           +G+RAS T  ++L++  +P +++L    +G +   T ++ AR G+A   +G A++ +  A
Sbjct: 218 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 276
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
            +Y   R  FG P+   Q +Q
Sbjct: 277 RQYVLDRKQFGRPLAANQLIQ 297

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  ++++V + L    I +FG+  QKE YLP    G  +GCFG++EP  GSD  +M+T A
Sbjct: 96  GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 155
Query: 64  RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
           RK    + L+G+K WITN   A  FV  A+ D+  + + I  FI+     GLS      K
Sbjct: 156 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 214
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
           +G+RAS T  ++L++  +P +++L    +G +   T ++ AR G+A   +G A++ +  A
Sbjct: 215 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 273
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
            +Y   R  FG P+   Q +Q
Sbjct: 274 RQYVLDRKQFGRPLAANQLIQ 294

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  ++++V + L    I +FG+  QKE YLP    G  +GCFG++EP  GSD  +M+T A
Sbjct: 95  GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 154
Query: 64  RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
           RK    + L+G+K WITN   A  FV  A+ D+  + + I  FI+     GLS      K
Sbjct: 155 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 213
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
           +G+RAS T  ++L++  +P +++L    +G +   T ++ AR G+A   +G A++ +  A
Sbjct: 214 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 272
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
            +Y   R  FG P+   Q +Q
Sbjct: 273 RQYVLDRKQFGRPLAANQLIQ 293

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
           G+    E Y+   + G  +G  G++EPG+GSD AN+ T A +E D +V+NG K++IT+G 
Sbjct: 127 GSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGV 186
Query: 84  EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
            A  FV  A       + G++  +I  +SPG  + ++ DK+G R S T  +   DV++P 
Sbjct: 187 RAD-FVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPA 245
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
           D+++G E  GF   +      R+G+A Q    A  A D A  +A +R  FG P+   Q +
Sbjct: 246 DNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQII 305
Query: 204 Q 204
           +
Sbjct: 306 R 306

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 24  GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
           G ++  +TY+   + G  +G   I+EPG GSD  ++ T A  + DH+V+NG K++IT+G 
Sbjct: 124 GDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGV 183
Query: 84  EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
            A  +V  A         G++  ++   +PG  + +K DK+G R+S T  +   DV++P+
Sbjct: 184 RAD-YVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPV 242
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
            +++G E  GF          R+G+A+Q    AQ   D  +E+   R  FG P++  QAV
Sbjct: 243 ANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAV 302
Query: 204 Q 204
           Q
Sbjct: 303 Q 303

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  + ++V + L    I  +G+++Q++ YLP    G  +GCFG++EP SGSD ++M T A
Sbjct: 90  GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 149
Query: 64  RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
              S +  + LNGTK+WITN   A  FV  A+ +       I  F++     GLS  + +
Sbjct: 150 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 205
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
            K  +RAS+T  +I++ V++P ++VL G    G   G   ++ AR G+A   +G ++   
Sbjct: 206 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 263
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             A +YA  R+ FG P+ + Q +Q
Sbjct: 264 HTARQYALDRMQFGVPLARNQLIQ 287

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  + ++V + L    I  +G+++Q++ YLP    G  +GCFG++EP SGSD ++M T A
Sbjct: 92  GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 151
Query: 64  RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
              S +  + LNGTK+WITN   A  FV  A+ +       I  F++     GLS  + +
Sbjct: 152 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 207
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
            K  +RAS+T  +I++ V++P ++VL G    G   G   ++ AR G+A   +G ++   
Sbjct: 208 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 265
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             A +YA  R+ FG P+ + Q +Q
Sbjct: 266 HTARQYALDRMQFGVPLARNQLIQ 289

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
           G  + ++V + L    I  +G+++Q++ YLP    G  +GCFG++EP SGSD ++M T A
Sbjct: 92  GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 151
Query: 64  RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
              S +  + LNGTK+WITN   A  FV  A+ +       I  F++     GLS  + +
Sbjct: 152 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 207
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
            K  +RAS+T  +I++ V++P ++VL G    G   G   ++ AR G+A   +G ++   
Sbjct: 208 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 265
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             A +YA  R+ FG P+ + Q +Q
Sbjct: 266 HTARQYALDRMQFGVPLARNQLIQ 289

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Query: 6   STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
           ST + VH+ L    I   G++ QKE YLPS      V C+ ++EP +GSDA+ + TTA K
Sbjct: 133 STFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATK 192
Query: 66  ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
               W +NG K WI N   A   +  A+   + +   I  FI+  D+PGL   K  +K+G
Sbjct: 193 VEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPGLKATKIPNKIG 249
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
           +R     +++L++V +P +  L      F+     +  +R+ +A Q IGI+   +D    
Sbjct: 250 LRMVQNGDILLQNVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHR 308
Query: 186 YAGKRIAFGAPILKLQAVQ 204
           Y  +R  FGAP+   Q  Q
Sbjct: 309 YLKERKQFGAPLAAFQLNQ 327

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Query: 6   STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
           ST + VH+ L    I   G++ QKE YLPS      V C+ ++EP +GSDA+ + TTA K
Sbjct: 133 STFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATK 192
Query: 66  ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
               W +NG K WI N   A   +  A+   + +   I  FI+  D+PGL   K  +K+G
Sbjct: 193 VEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPGLKATKIPNKIG 249
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
           +R     +++L++V +P +  L      F+     +  +R+ +A Q IGI+   +D    
Sbjct: 250 LRMVQNGDILLQNVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHR 308
Query: 186 YAGKRIAFGAPILKLQAVQ 204
           Y  +R  FGAP+   Q  Q
Sbjct: 309 YLKERKQFGAPLAAFQLNQ 327

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 102/188 (54%), Gaps = 6/188 (3%)
Query: 19  LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
           +++++G+++QKE +L   ++G     F ++EP  + SDA NM  TA  E D  V+NG K 
Sbjct: 120 VLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKW 179
Query: 78  WITN-GY-EAKAFVCIAQAD-KSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCN- 133
           W T  G+ + K  + +   D  + ++   +  ++PMD+PG+++ +    +G       + 
Sbjct: 180 WSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHG 239
Query: 134 -VILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIA 192
            V  ++V++P D+ +   G+GF++    +   R+  A + IG+A+ A + A      R A
Sbjct: 240 VVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTA 299
Query: 193 FGAPILKL 200
           FG P++ L
Sbjct: 300 FGKPLVNL 307

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 19  LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
           +++ +G+++QK+ +L   + G    CF ++EP  + SDA N+  + +++ D +V+NG K 
Sbjct: 126 VLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKW 185
Query: 78  WITNGYEAKAFVCIA----QADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS---S 130
           W +     K  + I     Q     +HK  +  ++PM++PG+ + +     G   +    
Sbjct: 186 WSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGG 245
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKR 190
              +    V++P  +++  EG GF++    +   RI    + +G+A+ A     E A +R
Sbjct: 246 HFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQR 305
Query: 191 IAF 193
           IAF
Sbjct: 306 IAF 308

>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 6   STILTVHNCLYAGLIN----KFGTKKQK---ETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
           ST L +H  L  GL      + G ++ +   E  L   V G  V C GI       D   
Sbjct: 97  STALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIK------DHHT 150
Query: 59  MLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL 117
            +TT R + +  W+L+G K+ ++       FV  A+ D +     + + ++  D+PG ++
Sbjct: 151 AVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTV 210
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK--VGLTGIDCARIGMASQGIGI 175
               D LG+RAS T +++ +D  IP D VL ++  G +    L G   + + +    +G+
Sbjct: 211 LDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGV 270
Query: 176 AQAAFDCAMEYAGKR 190
           AQAA+D A+    +R
Sbjct: 271 AQAAYDTAVAALERR 285

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
           C    +++T    + A  + + G   Q+ T+L     G  +   G SE  +GSD + M T
Sbjct: 68  CSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSG-KLAAVGFSERQAGSDLSAMRT 125
Query: 62  TARKESDHWVLNGTKSWITNGYEAKAFVCIA-QADKSKKHKGITAFIIPMDSPGLSLGKK 120
             R + D  V++G K W T    A   V    Q D S         ++P D+PG+ + + 
Sbjct: 126 RVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSG-----AVVVVPADTPGVRVERV 180
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG-IDCARIGMASQGIGIAQAA 179
               G RA+   ++ L+ V++P  +VL   G    + +   +   R  +A   +GI +A 
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240
Query: 180 FDCAMEYAGKRIAFGAPILKLQAV 203
              A+ +A  R  FG P+   Q V
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLV 264

>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 28  QKETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWIT 80
           Q   +L  F+  +G+ +     SEPG  ++A         TTAR E D WV+NG K W T
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWAT 172
Query: 81  N--GYEAKA--FVCIAQAD--------KSKKHKGITAFIIPMD-----SPGLSLGKKEDK 123
           N  G++ K     C+   D        +  ++K +   +   D          + +    
Sbjct: 173 NCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVAT 232
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
            G  + S  +V   +V++P  +VL   G+G KV     D + + + + G+G+ +AAFD A
Sbjct: 233 PGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAA 292
Query: 184 MEYAGKRIAFGA-PILKLQA 202
           +++A +    GA P+L+ QA
Sbjct: 293 LKFAKEDNRGGAVPLLERQA 312

>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 45  FGISEPGSGSDAANMLTTA-RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGI 103
            G++E   GSD  +  T A R E   + L G K W  +  ++ A + +AQ        G+
Sbjct: 182 MGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQTAG-----GL 235
Query: 104 TAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKV-- 156
           + F +P   P      + L + +DKLG R++++C V  +D    +  +LG EGEG ++  
Sbjct: 236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA---IGWLLGLEGEGIRLIL 292
Query: 157 ---GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILK 199
              G+T  DCA   + S    + + AF  A+ +A +R  FG P+++
Sbjct: 293 KMGGMTRFDCA---LGSH--AMMRRAFSLAIYHAHQRHVFGNPLIQ 333

>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 16/195 (8%)
Query: 6   STILTVHNCLYAGLINKF----GT---KKQKETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
           ST L  H  L  GL   +    GT   +   E  L +  +G    C      G+  DA  
Sbjct: 86  STALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVC------GALKDAPG 139
Query: 59  MLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL 117
           ++T    + +  W+L+G K  ++    A  F   AQ         +   ++  D+PGL++
Sbjct: 140 VVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTV 199
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQGIGI 175
               D LG+RAS T  V+ +   +  D +L  G  G      L G   + I M     GI
Sbjct: 200 LDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGI 259
Query: 176 AQAAFDCAMEYAGKR 190
           AQAA D A+ +   R
Sbjct: 260 AQAARDIAVGFCAGR 274

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 11  VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESD 68
           +H  ++   I   GT KQ+E +LP       +GC+  +E G GS+   + TTA    ++D
Sbjct: 120 LHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTD 179
Query: 69  HWV-----LNGTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGL 115
            +V     L  +K W    G  +   V  A+     K  G+  FI+ + S       PG+
Sbjct: 180 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGV 239
Query: 116 SLGKKEDKLGIRASSTCN---VILEDVKIPLDSVLGKEGEGFKVG 157
           ++G    K G  A ++ +   +  + V+IP D +L +  +  K G
Sbjct: 240 TVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEG 284

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 10/203 (4%)
Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           ++   A +I   G+++Q+E +L + +   N      S   +       ++    E   +V
Sbjct: 116 YHLTNAPMIELIGSQEQEE-HLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYV 174
Query: 72  LNGTKSWITNGYEAKA-FVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
           LNGTK + +    +   FV     D S +   I A  IP    G++       +G+R + 
Sbjct: 175 LNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTD 234
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGID-------CARIGMASQGIGIAQAAFDCA 183
           + +    +VK+  D VLG     F +     +        A++  A+  +GIA  A D A
Sbjct: 235 SGSTDFHNVKVEPDEVLGAP-NAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAA 293
Query: 184 MEYAGKRIAFGAPILKLQAVQLP 206
            EY   +     P    QA + P
Sbjct: 294 REYTRTQARPWTPAGIQQATEDP 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	1e-110
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	1e-109
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	1e-107
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-107
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	1e-106
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	1e-106
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-104
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-104
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	1e-103
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	1e-103
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	1e-103
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-102
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	4e-96
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	8e-95
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	5e-94
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	1e-93
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	2e-91
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	3e-86
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	1e-85
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	1e-84
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	3e-84
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	4e-84
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	8e-83
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	1e-82
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	2e-82
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	4e-81
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	2e-80
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	2e-77
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	9e-73
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	7e-54
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	6e-49
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	6e-45
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	7e-32
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	6e-29
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	1e-27
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	9e-26
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	2e-21
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	4e-21
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	2e-12

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  320 bits (823), Expect = e-110
 Identities = 116/204 (56%), Positives = 151/204 (74%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T  I++V+N LY G I KFG+K+QK+ ++  F  G  +GCF +SEPG+GSDA    
Sbjct: 80  GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 139

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTAR E D WVLNGTK+WITN +EA A V  A  D++ ++K I+AF++PM +PGL+LGKK
Sbjct: 140 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKK 199

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ +  +D  RIG+ASQ +GIAQ A 
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           DCA+ YA  R+AFGAP+ KLQ +Q
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQ 283

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  318 bits (817), Expect = e-109
 Identities = 85/204 (41%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                +    + N L   LI K GT++QK TYLP  +    VG F +SE G+GSD+  + 
Sbjct: 103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLP-QLTTEKVGSFCLSEAGAGSDSFALK 161

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A KE D++VLNG+K WI++   A  F+ +A  D +  +KGIT+F++  D+PGL +GK 
Sbjct: 162 TRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKP 221

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E+KLG+RASSTC +  E+VK+P  ++LG+ G G+K  +  ++  RIG+A+Q +G+AQ  F
Sbjct: 222 ENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCF 281

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D  + Y  +RI FG  +   Q +Q
Sbjct: 282 DYTIPYIKERIQFGKRLFDFQGLQ 305

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  312 bits (802), Expect = e-107
 Identities = 90/205 (43%), Positives = 135/205 (65%), Gaps = 1/205 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
              G +  L+    L A  I +FGT+ QKE +L   V+GT +G FG++EP +G+DA+   
Sbjct: 82  YDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQ 141

Query: 61  TTARKESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
           T A K  D  + LNG+K +ITNG  A  ++  A  DKSK + GITAFI+   +PG + GK
Sbjct: 142 TIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGK 201

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
           KEDK+GI  S T  ++ +DVK+P +++LG+EG+GFK+ +  +D  RIG+A+Q +GIA+AA
Sbjct: 202 KEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAA 261

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
              A+EY+ +R+ FG P+ K Q++ 
Sbjct: 262 LADAVEYSKQRVQFGKPLCKFQSIS 286

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  311 bits (799), Expect = e-107
 Identities = 88/208 (42%), Positives = 125/208 (60%), Gaps = 4/208 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             G  +  +  HN L  G I   G++ QKE +LP    G  +G +G++EPGSGSDAA + 
Sbjct: 81  YDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALK 140

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK----SKKHKGITAFIIPMDSPGLS 116
           T A K    W LNGTK +IT G  A  +V +A+ D      +KH+GI+AF       GL 
Sbjct: 141 TKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLK 200

Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
           +G+KE+KLG+ AS T  +ILED+ +P +++LG+ G+GF   L  +D  RIG+A+  +G+ 
Sbjct: 201 VGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLG 260

Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           QAA D A+ YA  R AFG PI + + V 
Sbjct: 261 QAALDYALAYAKGREAFGRPIAEFEGVS 288

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  310 bits (796), Expect = e-106
 Identities = 84/204 (41%), Positives = 126/204 (61%), Gaps = 1/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
            C G  TI  + + L    +   GT++QKE +L    +   +  F +SEPG+GSDAA + 
Sbjct: 79  ACMGIYTIP-MASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALK 137

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A ++ DH+VLNGTK WI+NG EA+  V  A  +   +HKG+ A ++   +PG    K 
Sbjct: 138 TRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKI 197

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             K+G RAS T  ++ EDVK+P+++ LG+EGEGFK+ +  ++  RI +A+  +G+A+ A 
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRAL 257

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D A +YA +R AFG PI   QA+Q
Sbjct: 258 DEARKYAKEREAFGEPIANFQAIQ 281

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  309 bits (794), Expect = e-106
 Identities = 76/204 (37%), Positives = 114/204 (55%), Gaps = 1/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                S I  V+  L    +   G+++ K+  LP+   G  +  + +SE  +GSDAA+M 
Sbjct: 93  VDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMR 151

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A  + D W+LNG+K WITNG ++  +  +A  D  K   GI+AF++  D  G ++G K
Sbjct: 152 TRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPK 211

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E KLGI+ S T  +  E+ +IP D ++G+ G GFK  L  +D  R  + +Q +GIAQ A 
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D A+ Y  +R  FG P+   Q VQ
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQGVQ 295

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  305 bits (785), Expect = e-104
 Identities = 80/206 (38%), Positives = 114/206 (55%), Gaps = 2/206 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             G        H+ L    + + G + QKE YLP  + G  +G   +SEP +GSD  +M 
Sbjct: 89  ASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMK 148

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSK--KHKGITAFIIPMDSPGLSLG 118
             A K+ +H++LNG K WITNG +A   +  A+ D +     +GITAFI+    PG S  
Sbjct: 149 LKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTS 208

Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
           KK DKLG+R S+TC +I ED KIP  ++LG E +G  V ++G+D  R+ +A   +G+ QA
Sbjct: 209 KKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQA 268

Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
             D  + Y   R AFG  I   Q +Q
Sbjct: 269 VLDHTIPYLHVREAFGQKIGHFQLMQ 294

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  302 bits (777), Expect = e-104
 Identities = 77/204 (37%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                + I++V + L   ++ +FG++ QK  YL     G  +G F ++EP +GSDA ++ 
Sbjct: 77  ADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLR 136

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             AR+    +VLNG KSWIT+   A  +V +A+ +K     GI+AF++   +PGLS G+ 
Sbjct: 137 AEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRP 191

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E+K+G+ A+ T  V LE+V +P +++LG+EG G    L G+D  R+G+A+Q +GIA+ AF
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           + A  YA +R  FG  + + QA+ 
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIA 275

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  303 bits (778), Expect = e-103
 Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G       L +     A  I  +G++  K+ Y+P       +G FGI+EP +GSD   M 
Sbjct: 82  GSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMS 141

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFII-PMDSPGLSLGK 119
           +TA  + DHW+LNG+K+WI+N  +A   +  A  DK+   +G++AF+I P + PG+    
Sbjct: 142 STAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSN 201

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
            E KLG  AS T  + L++VK+P +++LGK G+G ++    ++  R+  A+ G+G+AQA 
Sbjct: 202 LE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQAC 260

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
            D A++Y  +R  FG PI   Q  Q
Sbjct: 261 LDAAIKYCNERRQFGKPIGDFQMNQ 285

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  303 bits (778), Expect = e-103
 Identities = 76/207 (36%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC G  T +  ++ L    I   G  +QK+ YL    +   +  + ++EPG+GSD A + 
Sbjct: 90  GCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
           T A K+ D +++NG K WITNG +A  +  +A++D   K+  +K  T FI+  D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208

Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
           G+KE  +G R S T  ++ EDVK+P ++VL  +G GFKV +   D  R  +A+  +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQ 268

Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQ 204
            A D A +YA +R  FG  +++ QA+ 
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAIS 295

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  302 bits (777), Expect = e-103
 Identities = 71/204 (34%), Positives = 122/204 (59%), Gaps = 2/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           GC  T+  +++HN + A +I+ FG ++Q+  + P          + ++EPGSGSDAA++L
Sbjct: 93  GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLL 151

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T+A+K+ DH++LNG+K++I+   E+  +V + +       KGI+  ++   +PGLS GKK
Sbjct: 152 TSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKK 210

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E K+G  +  T  VI ED  +P+ + +G EG+GF + + G++  RI +AS  +G A A+ 
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
               ++   R  FG P+   Q +Q
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQ 294

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  299 bits (767), Expect = e-102
 Identities = 72/204 (35%), Positives = 123/204 (60%), Gaps = 3/204 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                +  ++VH+ L +  +  FGT++QK+ +LP  + G  +G + +SEP +GSDAA + 
Sbjct: 90  RWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALR 148

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
             A      +V+NG+KSWIT+G +A  +   A+  +    +G++ F++P D PGLS GK 
Sbjct: 149 CAATPTDGGYVINGSKSWITHGGKADFYTLFARTGE--GSRGVSCFLVPADQPGLSFGKP 206

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           E+K+G+ A  T +   ++ +I  D  +G+EG+G ++  + +D  R+G+A+   G+AQAA 
Sbjct: 207 EEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAAL 266

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D A+ YA +R AFG  I+  Q + 
Sbjct: 267 DEAVAYANERTAFGRKIIDHQGLG 290

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  290 bits (743), Expect = 4e-96
 Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G GG S     H  +    +  FGT++QK  YLP    G  +  + ++EPGSGSDA    
Sbjct: 102 GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAK 161

Query: 61  TTARKESD--HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
           T A    D  H++LNG K WI+N   A  F   A+ D     +  TAF++  D+PGLS G
Sbjct: 162 TRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFG 217

Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
            +E K+GI+ASST  VILEDVK+P+++VLG+ G+G K+    ++  R  + +  +G A+ 
Sbjct: 218 PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKR 277

Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
           A + + +YA +R+ FG PI +   +Q
Sbjct: 278 ALELSAQYATQRVQFGRPIGRFGLIQ 303

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  279 bits (717), Expect = 8e-95
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 7/205 (3%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
            C    +++T    + A  + + G   Q+ T+L     G  +   G SE  +GSD + M 
Sbjct: 67  LCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMR 124

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T  R + D  V++G K W T    A   V     +           ++P D+PG+ + + 
Sbjct: 125 TRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG----SGAVVVVPADTPGVRVERV 180

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI-DCARIGMASQGIGIAQAA 179
               G RA+   ++ L+ V++P  +VL   G    + +       R  +A   +GI +A 
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
              A+ +A  R  FG P+   Q V 
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLVA 265

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  285 bits (730), Expect = 5e-94
 Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
            GG +     H  + +  I  FG ++QK+ YLP    G  +  + ++EPGSGSDA    T
Sbjct: 108 AGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKT 167

Query: 62  TAR--KESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
           TAR   E  H+VLNG K WITN   A  F+  A+ D     +  +AFI+  D  G+S   
Sbjct: 168 TARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSP 223

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
           +E K+GI+ SST  +ILED  +P +++LG+ G+G  +    ++  R  +    +G A+ A
Sbjct: 224 EEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRA 283

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
            + + +YA +R  F  PI +   +Q
Sbjct: 284 VEISAQYANQRQQFKQPIARFPLIQ 308

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  284 bits (728), Expect = 1e-93
 Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
              G    L  H  +    I  FGTK QKE YLP    G  V  F ++EP SGSDAA++ 
Sbjct: 122 HDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIR 181

Query: 61  TTARKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSP 113
           T+A       ++ LNG+K WI+NG  A  F   A+   +    G     ITAF++     
Sbjct: 182 TSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFG 241

Query: 114 GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI 173
           G++ G  E K+GI+AS+T  V  + V++P ++VLG+ G GFKV +  ++  R GMA+   
Sbjct: 242 GITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALA 301

Query: 174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           G  +     A+++A  R  FG  I     +Q
Sbjct: 302 GTMRGIIAKAVDHATNRTQFGEKIHNFGLIQ 332

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  273 bits (701), Expect = 2e-91
 Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 2/203 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
               T+  L +       L  ++    ++   L   +    V    +   G       + 
Sbjct: 94  ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVT 153

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T     +  W+L+G K+ ++       FV  A+ D +     + + ++  D+PG ++   
Sbjct: 154 TLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDN 213

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK--VGLTGIDCARIGMASQGIGIAQA 178
            D LG+RAS T +++ +D  IP D VL ++  G +    L G   + + +    +G+AQA
Sbjct: 214 WDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQA 273

Query: 179 AFDCAMEYAGKRIAFGAPILKLQ 201
           A+D A+    +R           
Sbjct: 274 AYDTAVAALERRPEPPQAAALTL 296

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  259 bits (663), Expect = 3e-86
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 1   GCGGTSTILTVHN--CLYAGLINKFGT---KKQKETYLPSFVDGTNVGCFGISEPGSGSD 55
               T+    V     L      + GT   +   E  L +  +G    C          D
Sbjct: 83  ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGA------LKD 136

Query: 56  AANMLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPG 114
           A  ++T    + +  W+L+G K  ++    A  F   AQ         +   ++  D+PG
Sbjct: 137 APGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPG 196

Query: 115 LSLGKKEDKLGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQG 172
           L++    D LG+RAS T  V+ +   +  D +L  G  G      L G   + I M    
Sbjct: 197 LTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIY 256

Query: 173 IGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
            GIAQAA D A+ +   R   G P    +A+
Sbjct: 257 AGIAQAARDIAVGFCAGR--GGEPRAGARAL 285

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  256 bits (657), Expect = 1e-85
 Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
            G +   + +HN +    I  +GT++QK+ +LP  V G  +    ++EPG+GSD AN+ T
Sbjct: 84  VGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANIST 143

Query: 62  TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKK--HKGITAFIIPMDSPGLSLGK 119
           TA K+ D++++NG K++ITNG  A   V   + D   K  H+GI+  ++  D+PG + G+
Sbjct: 144 TAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGR 203

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
           K +K+G+ A  T  +  +D K+P  ++LG+EG+GF   +  +   R+ +A      A+  
Sbjct: 204 KLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVM 263

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
           F    +Y  +R AFG  + + Q VQ
Sbjct: 264 FSLTKQYVKQRTAFGKRVSEFQTVQ 288

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  256 bits (655), Expect = 1e-84
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 30/233 (12%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG--TNVGCFGISEPGSGSD--- 55
               TS  + V   L    +    +   +E +L  F+ G    +     SEP   ++   
Sbjct: 86  VEPATSITI-VATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQ 144

Query: 56  --AANMLTTARKESDHWVLNGTKSWITNGYE-----AKAFVCIAQAD---------KSKK 99
                + TTARK  + WV++G K W +N        A     + +               
Sbjct: 145 KGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDP 204

Query: 100 HKGITAFIIPMDSPGLS------LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEG 153
              I   ++  ++   +      +  + +  G   +S  +    +  +P +++L   G  
Sbjct: 205 ATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLK 264

Query: 154 FK-VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-PILKLQAVQ 204
            + +  T    +   + +  IG A+AAF+ A+ +A      G+  I++ Q+V 
Sbjct: 265 AQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVA 317

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  254 bits (650), Expect = 3e-84
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 1/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G  G          +    +   G ++  +TY+   + G  +G   I+EPG GSD  ++ 
Sbjct: 101 GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLR 160

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A  + DH+V+NG K++IT+G  A   V  A+        G++  ++   +PG  + +K
Sbjct: 161 TRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRK 219

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
            DK+G R+S T  +   DV++P+ +++G E  GF          R+G+A+Q    AQ   
Sbjct: 220 LDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCL 279

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D  +E+   R  FG P++  QAVQ
Sbjct: 280 DLTVEWCRNRDTFGRPLISRQAVQ 303

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  254 bits (652), Expect = 4e-84
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 27/229 (11%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG--TNVGCFGISEPGSGSDA-- 56
                +  +     L    IN      Q   +L  F+ G  + +     SEPG  ++A  
Sbjct: 88  VEPSAALTIFATG-LGLTPIN-LAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALE 145

Query: 57  ---ANMLTTARKESDHWVLNGTKSWITNGYEAKA--------FVCIAQADKSKKHKGITA 105
                  TTAR E D WV+NG K W TN                  A     +       
Sbjct: 146 KGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENK 205

Query: 106 FII---------PMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKV 156
            +I                 + +     G  + S  +V   +V++P  +VL   G+G KV
Sbjct: 206 VMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKV 265

Query: 157 GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-APILKLQAVQ 204
                D + + + + G+G+ +AAFD A+++A +    G  P+L+ QA  
Sbjct: 266 AFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFA 314

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  250 bits (641), Expect = 8e-83
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 2/205 (0%)

Query: 1   GCGGTSTILTVHNC-LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANM 59
             G T     +    +    I   G+    E Y+   + G  +G  G++EPG+GSD AN+
Sbjct: 103 AGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANL 162

Query: 60  LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
            T A +E D +V+NG K++IT+G  A  FV  A       + G++  +I  +SPG  + +
Sbjct: 163 RTRAVREGDTYVVNGAKTFITSGVRAD-FVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSR 221

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
           + DK+G R S T  +   DV++P D+++G E  GF   +      R+G+A Q    A  A
Sbjct: 222 RLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRA 281

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
            D A  +A +R  FG P+   Q ++
Sbjct: 282 LDLAKSWARERETFGRPLTGRQIIR 306

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  249 bits (639), Expect = 1e-82
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 2/204 (0%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
              G  ++++V + L    I +FG+  QKE YLP    G  +GCFG++EP  GSD  +M+
Sbjct: 93  VDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMV 152

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T ARK    + L+G+K WITN   A  FV  A+ D+      I  FI+     GLS    
Sbjct: 153 TRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAI 211

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             K+G+RAS T  ++L++  +P +++L    +G +   T ++ AR G+A   +G A++ +
Sbjct: 212 HGKVGLRASITGEIVLDEAFVPEENILP-HVKGLRGPFTCLNSARYGIAWGALGAAESCW 270

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
             A +Y   R  FG P+   Q +Q
Sbjct: 271 HIARQYVLDRKQFGRPLAANQLIQ 294

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  249 bits (638), Expect = 2e-82
 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G  G  + ++V   L    I ++G+++QK  +LP    G  +GCFG++EP  GS+ A M 
Sbjct: 99  GDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMR 158

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T AR++   W+LNGTK WITNG  A      AQ D      GI  F++P D+PG +  + 
Sbjct: 159 TRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEI 213

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
             KL +RAS T  ++L++V++P  + L    EG    L+ ++ AR G+    +G A+ + 
Sbjct: 214 HRKLSLRASVTSELVLDNVRLPASAQLP-LAEGLSAPLSCLNEARFGIVFGALGAARDSL 272

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           +  + Y   R  F  P+   Q  Q
Sbjct: 273 ETTIAYTQSREVFDKPLSNYQLTQ 296

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  247 bits (632), Expect = 4e-81
 Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                ST + VH+ L    I   G++ QKE YLPS      V C+ ++EP +GSDA+ + 
Sbjct: 128 VDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLG 187

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           TTA K    W +NG K WI N   A   +  A   ++     I  FI+  D+PGL   K 
Sbjct: 188 TTATKVEGGWKINGQKRWIGNSTFADLLIIFA---RNTTTNQINGFIVKKDAPGLKATKI 244

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
            +K+G+R     +++L++V +P +  L      F+     +  +R+ +A Q IGI+   +
Sbjct: 245 PNKIGLRMVQNGDILLQNVFVPDEDRLP-GVNSFQDTSKVLAVSRVMVAWQPIGISMGIY 303

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           D    Y  +R  FGAP+   Q  Q
Sbjct: 304 DMCHRYLKERKQFGAPLAAFQLNQ 327

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  244 bits (625), Expect = 2e-80
 Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
           G  G  ++++V   L    I+ FG+ +QK+ +LP    G  +GCFG++EP  GSD A M 
Sbjct: 104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMR 163

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
           T A +  D W+L GTK WITNG  A   V  A+ D     +GI  F++P D+PG +    
Sbjct: 164 TRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTI 218

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
           + K+ +RAS T  ++L+ V++P  + L          L  ++ AR G+    +G A+   
Sbjct: 219 KSKMSLRASVTSELVLDGVRLPDSARLP-GATSLGAPLRCLNEARFGIVFGALGAARDCL 277

Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
           + A+ YA  R  F  PI   Q  Q
Sbjct: 278 ETALAYACSREQFDRPIGGFQLTQ 301

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  236 bits (604), Expect = 2e-77
 Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 6/205 (2%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA-ANM 59
              G  + ++V + L    I  +G+++QK  +LP    G  VGCFG++EP  GSD   NM
Sbjct: 85  VDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNM 144

Query: 60  LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
            T AR+E D WVLNGTK WITNG  A   V  A+ +  +    +  F++P D+PG    +
Sbjct: 145 KTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQARE 200

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
            + K+ +RAS T  ++LE+V++P    L  +  G K  L+ +  AR G+A   +G  +A 
Sbjct: 201 VKRKMSLRASVTSELVLEEVRVPESLRLP-KALGLKAPLSCLTQARFGIAWGAMGALEAV 259

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
           ++ A+ +A  R  FG P+ K Q VQ
Sbjct: 260 YEEAVAFAKSRSTFGEPLAKKQLVQ 284

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  224 bits (573), Expect = 9e-73
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
              G  + ++V + L    I  +G+++Q++ YLP    G  +GCFG++EP SGSD ++M 
Sbjct: 87  VDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSME 146

Query: 61  TTARKESD--HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
           T A   S    + LNGTK+WITN   A  FV  A+ +       I  F++     GLS  
Sbjct: 147 TRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRGLSAP 202

Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
           + + K  +RAS+T  +I++ V++P ++VL             ++ AR G+A   +G ++ 
Sbjct: 203 RIQGKFSLRASATGMIIMDGVEVPEENVLP-GASSLGGPFGCLNNARYGIAWGVLGASEF 261

Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
               A +YA  R+ FG P+ + Q +Q
Sbjct: 262 CLHTARQYALDRMQFGVPLARNQLIQ 287

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score =  181 bits (460), Expect = 7e-54
 Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 33/236 (13%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
             G    L +H  ++   +    T +Q+E +     +    G +  +E G G+    + T
Sbjct: 93  HRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLET 152

Query: 62  TAR--KESDHWVLNG-----TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS- 112
           TA    ++  ++LN       K W    G  +   + +AQ     +  G+ AF++P+   
Sbjct: 153 TATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI 212

Query: 113 ------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE-----------GFK 155
                 PG+++G    K G        + +++ +IP +++L K  +             K
Sbjct: 213 GTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK 272

Query: 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
           +    +   R  +          A   A+ Y+  R             IL  Q  Q
Sbjct: 273 LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQ 328

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score =  167 bits (425), Expect = 6e-49
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 37/241 (15%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
                   + +H  ++   I   GT++Q++ +L        +GC+  +E G GS+   + 
Sbjct: 91  HFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLE 150

Query: 61  TTAR--KESDHWVLNG-----TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS 112
           TTA    ++D +V++      +K W    G  +   V  A+   + K  GI  FI+ + S
Sbjct: 151 TTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRS 210

Query: 113 -------PGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGKEGE---------- 152
                  P +++G    K+G     +     ++ + V+IP D +L +  +          
Sbjct: 211 LEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS 270

Query: 153 --GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAV 203
               ++    +   R  + +        A   A  Y+  R  FGA        ++  +  
Sbjct: 271 DVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQ 330

Query: 204 Q 204
           Q
Sbjct: 331 Q 331

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score =  153 bits (388), Expect = 6e-45
 Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 14/197 (7%)

Query: 19  LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
           +++ +G+++QK+ +L   + G    CF ++EP  + SDA N+  + +++ D +V+NG K 
Sbjct: 126 VLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKW 185

Query: 78  WITNGYEAKAFVCIAQA----DKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST-- 131
           W +     K  + I           +HK  +  ++PM++PG+ + +     G   +    
Sbjct: 186 WSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGG 245

Query: 132 -CNVILEDVKIPLDSVLGKEGEGFKVG---LTGIDCARIGMASQGIGIAQAAFDCAMEYA 187
              +    V++P  +++  EG GF++    L      RI    + +G+A+ A     E A
Sbjct: 246 HFEIHFNQVRVPATNLILGEGRGFEISQGRLGP---GRIHHCMRTVGLAERALQIMCERA 302

Query: 188 GKRIAFGAPILKLQAVQ 204
            +RIAF   +   + V 
Sbjct: 303 TQRIAFKKKLYAHEVVA 319

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score =  118 bits (297), Expect = 7e-32
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 31/220 (14%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
            C GT+   ++     +  I  F  + Q E              +      + S +    
Sbjct: 106 ACAGTAWAFSLLCTH-SHQIAMFSKQLQDEI-------------WLKDPDATASSSIAPF 151

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
               +     +LNG   W +    A+  +       +  +K  +  +IP       +   
Sbjct: 152 GKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDN 209

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEG--EGFKVGLTGIDCARI-----------G 167
                I++S +  + L +V IP   +   +   EG   G      ++I           G
Sbjct: 210 WYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASG 269

Query: 168 MASQGIGIAQAAFDCAMEYAGKRI--AFGAPILKLQAVQL 205
            ++  +GIA+   +   E    R+    GA +       +
Sbjct: 270 FSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALM 309

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score =  111 bits (280), Expect = 6e-29
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 19/190 (10%)

Query: 19  LINKFGTKKQKETYLPSFVDGTNVGCF----GISEPGSGSDAANMLTTARKESD-HWVLN 73
               + T    + Y    + G          G++E   GSD  +  T A +  D  + L 
Sbjct: 152 PFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLV 211

Query: 74  GTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRA 128
           G K + +   ++ A + +AQ        G++ F +P   P      + L + +DKLG R+
Sbjct: 212 GHKWFFSVP-QSDAHLVLAQTAG-----GLSCFFVPRFLPDGQRNAIRLERLKDKLGNRS 265

Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
           +++C V  +D    L   LG EGEG ++ L      R   A     + + AF  A+ +A 
Sbjct: 266 NASCEVEFQDAIGWL---LGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAH 322

Query: 189 KRIAFGAPIL 198
           +R  FG P++
Sbjct: 323 QRHVFGNPLI 332

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score =  108 bits (269), Expect = 1e-27
 Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 25/205 (12%)

Query: 20  INKFGTKKQK--ETYLPSFVDGTNVGCFGISEP------GSGSDAANMLTTARKESDHWV 71
           I   G    +    +L    +          +P       +    +  L    K  D  +
Sbjct: 124 IGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGII 183

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL---------GKKED 122
           +NG K+  T                    + +    IP ++PG+++            E 
Sbjct: 184 VNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEH 243

Query: 123 KLGIR-ASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
            L  +        + ++V IP + V   G             D     +  + +  A+  
Sbjct: 244 PLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELI 303

Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
              A       I       KL  V 
Sbjct: 304 VGLA-----ILITEHIGTSKLPTVS 323

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score =  102 bits (255), Expect = 9e-26
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 22/225 (9%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSG----- 53
           G  G S        +       +  +  +    Y     D        ++ P        
Sbjct: 96  GMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARPP 155

Query: 54  ---SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPM 110
               D    +   ++     V+ G +   T     +  +  +   ++   K   AF +P 
Sbjct: 156 SGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALAFALPT 215

Query: 111 DSPGLSLGKKEDKLGIRAS-----------STCNVILEDVKIPLDSVLGKEGEGFKVGLT 159
            +PGL    +E  +G  +              C VI +DV +P + V             
Sbjct: 216 STPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAY 275

Query: 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           G   A   MA Q + +  A  +  +  A   +A G        VQ
Sbjct: 276 GATGALNHMAHQVVALKTAKTEAFLGVA-ALMAEGIGADVYGHVQ 319

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 34/202 (16%), Positives = 75/202 (37%), Gaps = 28/202 (13%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
            CG T  + ++   ++   +  F  + Q++     + + T+V           S +   +
Sbjct: 78  ACGSTGWVSSIIG-VHNWHLALFSQQAQEDV----WGNDTDVR---------ISSSYAPM 123

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
              +     + +NG  +W +    A   V      K  +     +F+IP +     +   
Sbjct: 124 GAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPRE--DYRIDDV 181

Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCAR------------IGM 168
            + +G+R + +  V++EDV +P   VL  +                             +
Sbjct: 182 WNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTI 241

Query: 169 ASQGIGIAQAAFDCAMEYAGKR 190
           ++  +G+A  A+D  +E+ GKR
Sbjct: 242 SAPIVGMAYGAYDAHVEHQGKR 263

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 89.1 bits (220), Expect = 4e-21
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 30/230 (13%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSG----- 53
            C G      V +     +  K+GT   K    YL    +   +    +++P        
Sbjct: 102 RCVGMDAFNAVFST-TYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAP 160

Query: 54  ---SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-ITAFIIP 109
               D    L    K  D  V+ G K+  T    +   + +     ++  K    +F  P
Sbjct: 161 SAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACP 220

Query: 110 MDSPGLSLGKKEDKLGIRAS---------------STCNVILEDVKIPLDSVLGKEGEGF 154
            D+ GL +         R                     V+ ++V IP D +   +   F
Sbjct: 221 SDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQEYDF 280

Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
              +        G   Q  G  +      +  A    A      K   V+
Sbjct: 281 AGMMVE---RFAGYHRQSYGGCKVGVGDVVIGAAALAADYNGAQKASHVK 327

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 37/223 (16%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             G +  +  +   ++   +     + Q+E     + +  +        P          
Sbjct: 91  LDGASGWVTGIVG-VHPWELAFADPQVQEEI----WGEDNDTWMASPYAPM--------- 136

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVC---IAQADKSKKHKGITAFIIPMDSPGLSL 117
             A      +VL G  S+ +     +       +   +           I+P     +  
Sbjct: 137 GVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQIV- 195

Query: 118 GKKEDK---LGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGID---------- 162
              ED    +G+R + + ++I++   +P    L   K  +G      G            
Sbjct: 196 ---EDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSC 252

Query: 163 CARIGMASQGIGIAQAAFDCAMEYAGKRIAF-GAPILKLQAVQ 204
              +G+ +  IGI + A  C +     R+A  G  I +   V 
Sbjct: 253 MFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVL 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	100.0
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	100.0
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	100.0
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	100.0
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.97
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.97
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.96
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	99.88

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=2.4e-45  Score=304.84  Aligned_cols=205  Identities=43%  Similarity=0.714  Sum_probs=192.0

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|||+..+.+++++++|||+|||+|.|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  161 (387)
T 2d29_A           82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  161 (387)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence            67888888888546788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCC----CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHH
Q psy1303          82 GYEAKAFVCIAQADKSK----KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVG  157 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~----~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~  157 (206)
                      +.+||+++|.+++++++    ++.++++|+||++.||+++.++|+++|+++++++++.|+||+||++++++.++.|+...
T Consensus       162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  241 (387)
T 2d29_A          162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV  241 (387)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred             CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence            99999999999986432    45579999999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       158 ~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...+...|+.+++.++|+++++++.+++|+++|++||+||++||.||++
T Consensus       242 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  290 (387)
T 2d29_A          242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFK  290 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHH
Confidence            8889999999999999999999999999999999999999999999874

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=2.7e-45  Score=304.86  Aligned_cols=205  Identities=56%  Similarity=0.989  Sum_probs=192.4

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..+++++++++|||+|||+|.|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  160 (391)
T 2vig_A           81 CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITN  160 (391)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecC
Confidence            67888888888536778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.+++++++++.++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++.++.|+......+
T Consensus       161 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l  240 (391)
T 2vig_A          161 AWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTL  240 (391)
T ss_dssp             TTTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHH
T ss_pred             CCcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHH
Confidence            99999999999986544456789999999999999999999999999999999999999999999999999998888889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+..++.++|+++++++.+++|+++|++||+||+++|.+|++
T Consensus       241 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~  285 (391)
T 2vig_A          241 DMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFK  285 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHH
Confidence            999999999999999999999999999999999999999999874

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.5e-45  Score=305.22  Aligned_cols=204  Identities=41%  Similarity=0.684  Sum_probs=192.0

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|. ++...|..+|+++||++|++++++|+.++++++|||+.|+|+..+.+++++++|||+|||+|.|+||
T Consensus        80 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  158 (379)
T 1ukw_A           80 CMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISN  158 (379)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccC
Confidence            677888888886 7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.+++++++++.++++|+||++.||+++.+.|+++|+++++++++.||||+||+++++|.++.|+......+
T Consensus       159 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  238 (379)
T 1ukw_A          159 GGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTL  238 (379)
T ss_dssp             TTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHH
T ss_pred             CCcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHH
Confidence            99999999999986444456889999999999999999999999999999999999999999999999999998888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+..++.++|+++++++.+++|+++|++||+||.++|.+|++
T Consensus       239 ~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~  283 (379)
T 1ukw_A          239 NKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFK  283 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHH
Confidence            999999999999999999999999999999999999999999874

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=2.4e-45  Score=304.38  Aligned_cols=205  Identities=43%  Similarity=0.767  Sum_probs=192.5

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~   80 (206)
                      |+++++++.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|||+..++++++++ +|||+|||+|.|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s  162 (383)
T 1buc_A           83 DAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFIT  162 (383)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE
T ss_pred             ChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccC
Confidence            67888888888647788899999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+.+||+++|.++++++++++++++|+||++.||+++.++|+++|+++++++++.|+||+||++++++.++.++......
T Consensus       163 ~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~  242 (383)
T 1buc_A          163 NGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMT  242 (383)
T ss_dssp             TTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHHHH
T ss_pred             CCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHHHH
Confidence            99999999999998654456689999999999999998899999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|++||+||.+||.+|++
T Consensus       243 l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~  288 (383)
T 1buc_A          243 LDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFK  288 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHH
Confidence            8999999999999999999999999999999999999999999864

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=2.5e-45  Score=306.21  Aligned_cols=204  Identities=29%  Similarity=0.497  Sum_probs=193.2

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|++++++++|||+.|+|+..+++++++++|||+|||+|.|+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  184 (403)
T 3r7k_A          105 GSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITS  184 (403)
T ss_dssp             CCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcccC
Confidence            78888888766547888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.++++++ +..++++|+||++.||+++.++|+++|+++++++++.||||+||++++++.+++|+......+
T Consensus       185 a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  263 (403)
T 3r7k_A          185 GVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF  263 (403)
T ss_dssp             TTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred             CccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence            9999999999998654 566899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+.+++.++|+++++++.+++|+++|++||+||.+||.||++
T Consensus       264 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  308 (403)
T 3r7k_A          264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHK  308 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHH
Confidence            999999999999999999999999999999999999999999874

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.4e-45  Score=306.73  Aligned_cols=205  Identities=37%  Similarity=0.615  Sum_probs=193.8

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++++..|. ++...|..+|+++||++|++++.+|+.++++++|||+.|+|+..+++++++++|||+|||+|.|+|
T Consensus        93 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s  171 (393)
T 3pfd_A           93 VDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWIT  171 (393)
T ss_dssp             TCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEec
Confidence            4778888888887 777889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+.+||+++|.++++++++..++++|+||++.||+++.++|+++|+++++++++.||||+||++++++.++.|+......
T Consensus       172 ~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~  251 (393)
T 3pfd_A          172 NGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALAT  251 (393)
T ss_dssp             TTTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHH
T ss_pred             CCcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHH
Confidence            99999999999998755556789999999999999999999999999999999999999999999999999999998899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+||.+||.||++
T Consensus       252 l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~  297 (393)
T 3pfd_A          252 LDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFM  297 (393)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999874

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=4.6e-45  Score=304.62  Aligned_cols=205  Identities=29%  Similarity=0.496  Sum_probs=193.5

Q ss_pred             CCCcc-hhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeee
Q psy1303           1 GCGGT-STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWI   79 (206)
Q Consensus         1 ~~~s~-a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v   79 (206)
                      +|+++ ++.+..|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..+++++++++|||+|||+|.|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~v  179 (403)
T 3p4t_A          100 AGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYI  179 (403)
T ss_dssp             TTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             hCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEe
Confidence            46777 78888887577788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          80 TNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      |++..||+++|.++++++ +.+++++|+||++.||+++.++|+++|+++++++++.||||+||++++++.+++|+.....
T Consensus       180 s~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~  258 (403)
T 3p4t_A          180 TSGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAA  258 (403)
T ss_dssp             ETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             cCCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHHH
Confidence            999999999999998654 5678999999999999999999999999999999999999999999999999999999889


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...|+.+++.++|+++++++.+++|+++|++||+||++||.||++
T Consensus       259 ~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~  305 (403)
T 3p4t_A          259 AFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNT  305 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHH
Confidence            99999999999999999999999999999999999999999999874

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=9.2e-45  Score=301.29  Aligned_cols=203  Identities=35%  Similarity=0.693  Sum_probs=185.5

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+..|. ++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..+++++++++|||+|||+|.|+|
T Consensus        90 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s  168 (387)
T 3nf4_A           90 RWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWIT  168 (387)
T ss_dssp             TCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEeccc
Confidence            4788899999988 888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.+||+++|.++++  ++.+++.+|+||++.||+++.+.|+++|+++++++++.|+||+||++++++.++.|+......
T Consensus       169 ~~~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~  246 (387)
T 3nf4_A          169 HGGKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSA  246 (387)
T ss_dssp             TTTTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred             CCcccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHH
Confidence            999999999999986  245678999999999999999999999999999999999999999999999999999998899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+|+.+||.+|++
T Consensus       247 l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~  292 (387)
T 3nf4_A          247 LDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFL  292 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999874

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=7.5e-45  Score=303.38  Aligned_cols=205  Identities=41%  Similarity=0.717  Sum_probs=190.9

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+.+|..++..+|..+|+++||++|++++.+|+ ++++++|||+.|+|+..+.+++++++|+|+|||+|.|+|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is  181 (404)
T 2jif_A          103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWIS  181 (404)
T ss_dssp             TCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeec
Confidence            4778888888887567788999999999999999999986 789999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+..||+++|.++++++++..++++|+||++.||+++.+.|+++|+++++++++.||||+||+++++|.++.|+......
T Consensus       182 ~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~  261 (404)
T 2jif_A          182 SAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGS  261 (404)
T ss_dssp             TTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHH
T ss_pred             CCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHH
Confidence            99999999999998644445678999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+||.+||.||++
T Consensus       262 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~  307 (404)
T 2jif_A          262 LNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQ  307 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHH
Confidence            8999999999999999999999999999999999999999999864

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-44  Score=298.80  Aligned_cols=200  Identities=39%  Similarity=0.696  Sum_probs=189.3

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|||+..+++++++++|||+|||+|.|+||
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  157 (372)
T 2dvl_A           78 DPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITS  157 (372)
T ss_dssp             CHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecC
Confidence            67788888888546778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.+++++     ++.+|+||++.||+++.+.|+++|+++++++++.||||+||++++++.++.|+......+
T Consensus       158 ~~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  232 (372)
T 2dvl_A          158 AGHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGL  232 (372)
T ss_dssp             TTTCSEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHH
T ss_pred             CCcCCEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHH
Confidence            999999999999753     688999999999999999999999999999999999999999999999999998888889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+..++.++|+++++++.+++|+++|++||+||.+||.+|++
T Consensus       233 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  277 (372)
T 2dvl_A          233 DSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFK  277 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHH
Confidence            999999999999999999999999999999999999999999874

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=9.7e-45  Score=300.99  Aligned_cols=203  Identities=33%  Similarity=0.590  Sum_probs=188.7

Q ss_pred             C-CcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           2 C-GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         2 ~-~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      | +++++.+  |..++...|..+|+++|+++|++++++|+.++++++|||+.|||+..+.+++++++|||+|||+|.|+|
T Consensus        85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s  162 (385)
T 2pg0_A           85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT  162 (385)
T ss_dssp             CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred             CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence            5 6777665  654677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303          81 NGYEAKAFVCIAQADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL  158 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~  158 (206)
                      ++.+||+++|.++++++  +++.++++|+||++.||+++.++|+++|+++++++++.|+||+||++++++.+++|+....
T Consensus       163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~  242 (385)
T 2pg0_A          163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM  242 (385)
T ss_dssp             TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred             CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence            99999999999998643  3455789999999999999988999999999999999999999999999999999998888


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++
T Consensus       243 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~  290 (385)
T 2pg0_A          243 EKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFR  290 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHH
Confidence            888999999999999999999999999999999999999999999874

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=5.8e-45  Score=303.17  Aligned_cols=205  Identities=39%  Similarity=0.663  Sum_probs=192.4

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|++++++++|||+.|+|+..+.+++++++|||+|||+|.|+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  169 (394)
T 1ivh_A           90 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN  169 (394)
T ss_dssp             CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             chhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCC
Confidence            67888888888656788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          82 GYEAKAFVCIAQADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      +.+||+++|.++++++  +++.++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++.++.|+.....
T Consensus       170 ~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~  249 (394)
T 1ivh_A          170 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMS  249 (394)
T ss_dssp             GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred             CCcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHH
Confidence            9999999999998643  34467899999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...|+..++.++|+++++++.+++|+++|++||+||++||.+|++
T Consensus       250 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  296 (394)
T 1ivh_A          250 GLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGK  296 (394)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHH
Confidence            89999999999999999999999999999999999999999999874

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=1.3e-44  Score=301.23  Aligned_cols=204  Identities=37%  Similarity=0.617  Sum_probs=189.3

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+ +|..++...|..+|+++|+++||+++++|+.++++++|||+.|+|+..++++|++++|||+|||+|.|+||
T Consensus        91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (396)
T 1egd_A           91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  169 (396)
T ss_dssp             CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence            67777776 66646667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCC---CceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303          82 GYEAKAFVCIAQADKSKKH---KGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL  158 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~---~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~  158 (206)
                      +.+||+++|.++++++++.   .++++|+||++.||+++.++|+++|+++++++++.||||+||+++++|.++.|+....
T Consensus       170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  249 (396)
T 1egd_A          170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM  249 (396)
T ss_dssp             TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred             CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence            9999999999998654333   6788999999999999999999999999999999999999999999999999998888


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...|+.+++.++|+++++++.+++|+++|++||+||+++|.||++
T Consensus       250 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~  297 (396)
T 1egd_A          250 GAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFM  297 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHH
Confidence            889999999999999999999999999999999999999999999864

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.7e-44  Score=301.21  Aligned_cols=199  Identities=35%  Similarity=0.650  Sum_probs=189.2

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++++.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..++++|++++|||+|||+|.|+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~  184 (403)
T 3sf6_A          105 DSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITN  184 (403)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             cccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeecC
Confidence            67888888888756788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +..||+++|.++++     +++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++. ++|+......+
T Consensus       185 a~~Ad~~~v~ar~~-----~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l  258 (403)
T 3sf6_A          185 GSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPLRCL  258 (403)
T ss_dssp             GGGCSEEEEEEEET-----TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHH
T ss_pred             CcccCEEEEEEEeC-----CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHHHHH
Confidence            99999999999985     3689999999999999999999999999999999999999999999998 88998888999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+.+++.++|+++++++.+++|+++|++||+|++++|.||++
T Consensus       259 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~  303 (403)
T 3sf6_A          259 NEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQK  303 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHH
Confidence            999999999999999999999999999999999999999999874

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=3e-44  Score=299.32  Aligned_cols=199  Identities=35%  Similarity=0.658  Sum_probs=188.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..+.++|++++|||+|||+|.|+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  179 (399)
T 3swo_A          100 DSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN  179 (399)
T ss_dssp             CHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECC
Confidence            67788888888657788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.++++     +++.+|+||++.||+++.+.|+++|+++++++++.|+||+||++++++. ++|+......+
T Consensus       180 a~~Ad~~~v~a~~~-----~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l  253 (399)
T 3swo_A          180 GNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLSCL  253 (399)
T ss_dssp             TTTCSEEEEEEBCT-----TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHHHH
T ss_pred             CCccCEEEEEEEeC-----CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHHHH
Confidence            99999999999975     3588999999999999999999999999999999999999999999998 88998888999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+..++.++|+++++++.+++|+++|++||+||+++|.+|++
T Consensus       254 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~  298 (399)
T 3swo_A          254 NEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEK  298 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHH
Confidence            999999999999999999999999999999999999999999874

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=4.9e-44  Score=297.50  Aligned_cols=204  Identities=35%  Similarity=0.670  Sum_probs=191.2

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+..|. ++..+|..+|+++||++|++++++|+.++++++|||+.|+|+..+.++|++++|||+|||+|.|+|
T Consensus        93 ~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is  171 (393)
T 1rx0_A           93 GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFIS  171 (393)
T ss_dssp             TCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeec
Confidence            4678888888887 778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+.+||+++|.+++++ +++.++++|+||++.||+++.+.|+++|+++++++.+.||||+||++++++.++.|+......
T Consensus       172 ~a~~Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~  250 (393)
T 1rx0_A          172 GAGESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRG  250 (393)
T ss_dssp             TTTTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHH
T ss_pred             CCccCCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHH
Confidence            9999999999999754 345688999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+||+++|.||++
T Consensus       251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~  296 (393)
T 1rx0_A          251 LNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFT  296 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHH
Confidence            8889999999999999999999999999999999999999999874

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=1.6e-44  Score=300.71  Aligned_cols=204  Identities=34%  Similarity=0.575  Sum_probs=184.4

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..+.+++++++|||+|||+|.|+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  172 (396)
T 3ii9_A           93 VDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWIT  172 (396)
T ss_dssp             TCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeEC
Confidence            46788888888875667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      ++.+||+++|.+++++ ++.+++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++. ++|+......
T Consensus       173 ~a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~~  250 (396)
T 3ii9_A          173 NSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFTC  250 (396)
T ss_dssp             TGGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHH
T ss_pred             CCccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHHH
Confidence            9999999999999862 2345689999999999999999999999999999999999999999999976 7889888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+|+++||.||++
T Consensus       251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  296 (396)
T 3ii9_A          251 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKK  296 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999874

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.9e-44  Score=297.37  Aligned_cols=199  Identities=25%  Similarity=0.411  Sum_probs=185.1

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|. +|+++||++|++++++|+ +.++++|||+.|+|+..+.+++++++|||+|||+|.|+|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  145 (366)
T 1r2j_A           68 CSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTA  145 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETT
T ss_pred             ChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccC
Confidence            67888888888546677788 999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHH-HHh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVG-LTG  160 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~-~~~  160 (206)
                      +.+||+++|.+++++    +++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++.+++|+... ...
T Consensus       146 ~~~Ad~~~v~a~~~~----~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~  221 (366)
T 1r2j_A          146 AAYADHLVVFGLQED----GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAAS  221 (366)
T ss_dssp             TTTCSEEEEEEBCSS----SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHH
T ss_pred             CcccCEEEEEEEeCC----CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHH
Confidence            999999999998753    278899999999999999999999999999999999999999999999988898777 778


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+..++.++|+++++++.+++|+++|++||+||++||.+|++
T Consensus       222 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~  267 (366)
T 1r2j_A          222 LAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGH  267 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCchhhhHHHHHH
Confidence            8899999999999999999999999999999999999999999874

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=1.4e-43  Score=298.10  Aligned_cols=201  Identities=33%  Similarity=0.523  Sum_probs=186.8

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..++...|..+|+++||++|++++++|+.++++++|||+.|||+..++++|++++|||+|||+|.|+||
T Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~  208 (436)
T 2ix5_A          129 DASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGN  208 (436)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCC
Confidence            66777777778656778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|.++++++   .++.+|+||++.||+++.+.|+++|+++++++++.|+||+||++++++.. .++......+
T Consensus       209 a~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~~~~l  284 (436)
T 2ix5_A          209 STFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVL  284 (436)
T ss_dssp             TTTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHHHHHH
T ss_pred             CcccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHHHHHH
Confidence            9999999999998632   36889999999999999999999999999999999999999999999865 5788888889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ...|+.+++.++|+++++++.+++|+++|+|||+||++||.||++
T Consensus       285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~  329 (436)
T 2ix5_A          285 AVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQK  329 (436)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHH
Confidence            999999999999999999999999999999999999999999874

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=4.5e-44  Score=298.08  Aligned_cols=203  Identities=35%  Similarity=0.664  Sum_probs=191.5

Q ss_pred             CCcchhhhhhhhhhhHH-HHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAG-LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      |+++++.+.+|. ++.. .|..+|+++|+++|++++++|+.++++++|||+.|+|+..+.+++++++|||+|||+|.|+|
T Consensus        83 ~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s  161 (397)
T 3mpi_A           83 SSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWIS  161 (397)
T ss_dssp             CHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred             CchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEeeC
Confidence            677888888886 6666 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEe-ecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFII-PMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT  159 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lv-p~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~  159 (206)
                      |+.+||+++|.++++++++..++.+|+| |++.||+++ ++|+++|+++++++++.||||+||++++++.++.++.....
T Consensus       162 ~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~  240 (397)
T 3mpi_A          162 NAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFG  240 (397)
T ss_dssp             TTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             CCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHHHH
Confidence            9999999999999875445668899999 999999999 99999999999999999999999999999999999998888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...|+..++.++|+++++++.+++|+++|++||+|++++|.+|++
T Consensus       241 ~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~  287 (397)
T 3mpi_A          241 SLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDM  287 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999863

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=2.3e-43  Score=295.29  Aligned_cols=190  Identities=27%  Similarity=0.507  Sum_probs=180.1

Q ss_pred             HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEEEE
Q psy1303          17 AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCIAQ   93 (206)
Q Consensus        17 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~   93 (206)
                      ..+|..+|+++||++||+++++|+.++++++|||+ .|+|+..++|+|++++|||+|||+|.|+||+.+  ||+++|.++
T Consensus       118 ~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~  197 (415)
T 4hr3_A          118 MEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGL  197 (415)
T ss_dssp             HHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEE
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeEEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEE
Confidence            46789999999999999999999999999999999 999999999999999999999999999999966  999999999


Q ss_pred             eCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCc--eeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHH
Q psy1303          94 ADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS--TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMAS  170 (206)
Q Consensus        94 ~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~--~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa  170 (206)
                      ++++ ++.+++++|+||++.||+++.++|+++|+++++  ++++.|+||+||++++|+.+++|+......+...|+.+++
T Consensus       198 ~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa  277 (415)
T 4hr3_A          198 TDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAM  277 (415)
T ss_dssp             CCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEEEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHH
T ss_pred             eCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHH
Confidence            8753 355789999999999999999999999999987  9999999999999999999999999989999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         171 QGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       171 ~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .++|+++++++.+++|+++|++||+||+++|.||++
T Consensus       278 ~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~  313 (415)
T 4hr3_A          278 RLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRER  313 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHH
Confidence            999999999999999999999999999999999874

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-43  Score=292.97  Aligned_cols=200  Identities=38%  Similarity=0.661  Sum_probs=184.0

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCc-cCceeEEEEeCCEEEEeeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA-ANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~-~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      |+++++.+.+|..++...|..+|+++||++|++++++|+.++++++|||+.|+|+ ..+++++++++|||+|||+|.|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s  165 (385)
T 2eba_A           86 DSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWIT  165 (385)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEE
T ss_pred             CchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccC
Confidence            6788888888875667888999999999999999999999999999999999999 889999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG  160 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~  160 (206)
                      |+.+||+++|.+++++  +  .+++|+||++.||+++.+.|+++|+++++++++.|+||+||+++++ ..++|+......
T Consensus       166 ~~~~Ad~~~v~a~~~~--g--~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~~  240 (385)
T 2eba_A          166 NGNLAHLAVIWAKDEG--G--EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLSC  240 (385)
T ss_dssp             TTTTCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHHH
T ss_pred             CCcccCEEEEEEEeCC--C--cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHHH
Confidence            9999999999999752  2  2889999999999999999999999999999999999999999999 678888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...|+.+++.++|+++++++.+++|+++|++||+||++||.||++
T Consensus       241 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~  286 (385)
T 2eba_A          241 LTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAK  286 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHH
Confidence            8899999999999999999999999999999999999999999874

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-43  Score=305.61  Aligned_cols=202  Identities=39%  Similarity=0.679  Sum_probs=190.0

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEE--eCCEEEEeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK--ESDHWVLNGTKSW   78 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~   78 (206)
                      .|+++++.+..|..++..+|..+|+++||++|||++++|++++++++|||++|||+..++|+|++  ++++|+|||+|.|
T Consensus       102 ~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~  181 (577)
T 2z1q_A          102 GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQW  181 (577)
T ss_dssp             TSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEE
T ss_pred             hcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeC
Confidence            37889999998875667789999999999999999999999999999999999999999999998  4568999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303          79 ITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL  158 (206)
Q Consensus        79 v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~  158 (206)
                      +||+..||+++|++++++    .++++|+||++.||+++.+.|+++|+++++++.+.|+||+||.+++||..+.|+....
T Consensus       182 it~a~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~  257 (577)
T 2z1q_A          182 ISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAF  257 (577)
T ss_dssp             EETTTTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHH
T ss_pred             CCCCCccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHH
Confidence            999999999999999853    5789999999999999999999999999999999999999999999999999999888


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...|+.+++.++|+++++++.+++|+++|+|||+||++||.||++
T Consensus       258 ~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~  305 (577)
T 2z1q_A          258 NVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQK  305 (577)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999874

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=7.8e-43  Score=290.16  Aligned_cols=201  Identities=32%  Similarity=0.551  Sum_probs=184.8

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLNGTKSW   78 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~   78 (206)
                      +|+++++.+.+|..++...|..+|+++|+++|++++++|+.++++++|||+.|+|+..++++|+++  +|||+|||+|.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~  166 (392)
T 1siq_A           87 VDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTW  166 (392)
T ss_dssp             TCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEE
T ss_pred             hCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEe
Confidence            367777777777655677888999999999999999999999999999999999999999999999  999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303          79 ITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL  158 (206)
Q Consensus        79 v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~  158 (206)
                      +||+..||+++|.+++++    .++.+|+||++.||+++.+.|+++|+++++++++.||||+||++++++.. .|+....
T Consensus       167 vs~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~~~  241 (392)
T 1siq_A          167 ITNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGGPF  241 (392)
T ss_dssp             EETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHHHH
T ss_pred             ecCCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-cCHHHHH
Confidence            999999999999999853    24789999999999999999999999999999999999999999999865 5777777


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...|+.+++.++|+++++++.+++|+++|++||+|++++|.||++
T Consensus       242 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~  289 (392)
T 1siq_A          242 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKK  289 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHH
Confidence            788889999999999999999999999999999999999999999874

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=8.7e-43  Score=302.59  Aligned_cols=199  Identities=35%  Similarity=0.580  Sum_probs=184.5

Q ss_pred             cchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEeeeeeeeeC
Q psy1303           4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLNGTKSWITN   81 (206)
Q Consensus         4 s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~   81 (206)
                      +.+..+..|..++...|..+|+++|+++|||++++|++++++++|||+.|||+..++|+|+++  +++|+|||+|.|+||
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~  189 (597)
T 3owa_A          110 GFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITN  189 (597)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCC
Confidence            344555666656666788999999999999999999999999999999999999999999985  556999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI  161 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~  161 (206)
                      +.+||+++|+|++++    +++++|+||++.||+++.+.|+++|+++++++++.|+||+||+++++|..+.|+......+
T Consensus       190 a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l  265 (597)
T 3owa_A          190 SAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNIL  265 (597)
T ss_dssp             TTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHH
T ss_pred             CccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhh
Confidence            999999999999864    4789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +..|+.+++.++|+++++++.+++|+++|+|||+||++||.||++
T Consensus       266 ~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~  310 (597)
T 3owa_A          266 NIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEK  310 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHH
Confidence            999999999999999999999999999999999999999999874

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.5e-43  Score=292.93  Aligned_cols=192  Identities=23%  Similarity=0.485  Sum_probs=179.3

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEE
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCI   91 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~   91 (206)
                      .+..+|..+|+++|+++|++++++|+.++++++|||+ .|||+..+.++|++++|||+|||+|.|+||+.+  ||+++|.
T Consensus       122 ~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~~~Ad~~~v~  201 (428)
T 2wbi_A          122 GNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVL  201 (428)
T ss_dssp             HHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEE
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCCEEEEEeEEeccCCCCCCcCCEEEEE
Confidence            4567888999999999999999999999999999999 999999999999999999999999999999988  9999999


Q ss_pred             EEeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCc---eeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHH
Q psy1303          92 AQADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS---TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARI  166 (206)
Q Consensus        92 a~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~---~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~  166 (206)
                      ++++++  ++..++++|+||++.||+++.++|+++|+++++   ++++.|+||+||++++|+.++.|+......+...|+
T Consensus       202 art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~VP~~~~lg~~g~g~~~~~~~l~~~r~  281 (428)
T 2wbi_A          202 GRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRI  281 (428)
T ss_dssp             EECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEEEEGGGBCSCTTCHHHHHHHHHHHHHH
T ss_pred             EEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceEECHHHhcCCccchHHHHHHHHHhHHH
Confidence            998643  234578999999999999999999999999995   999999999999999999999999888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         167 GMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       167 ~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+++.++|+++++++.+++|+++|++||+|++++|.||++
T Consensus       282 ~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~  321 (428)
T 2wbi_A          282 HHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHW  321 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHH
Confidence            9999999999999999999999999999999999999874

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=2.2e-42  Score=300.76  Aligned_cols=205  Identities=36%  Similarity=0.559  Sum_probs=189.6

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLNGTKSWI   79 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v   79 (206)
                      |+++++.+..|..++..+|..+|+++||++|+|++++|+.++++++|||+.|||+..+.|+|+++  +++|+|||+|.|+
T Consensus       123 ~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~i  202 (607)
T 2uxw_A          123 DLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWI  202 (607)
T ss_dssp             CHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEee
Confidence            67888888888645578899999999999999999999999999999999999999999999986  4489999999999


Q ss_pred             eCCCCCCEEEEEEEeCCC-CC----CCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccH
Q psy1303          80 TNGYEAKAFVCIAQADKS-KK----HKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGF  154 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~~-~~----~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~  154 (206)
                      |++..+|+++|+|++++. ++    .+++++|+||++.|||++.+.|+++|+++++++.+.|+||+||.+++||.++.|+
T Consensus       203 s~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~  282 (607)
T 2uxw_A          203 SNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGF  282 (607)
T ss_dssp             ETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHH
T ss_pred             cCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchH
Confidence            999999999999998531 11    3578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       155 ~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+...++..|+..++.++|+++++++.+++|+++|+|||+||++||.||++
T Consensus       283 ~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~  334 (607)
T 2uxw_A          283 KVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEK  334 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHH
Confidence            9988999999999999999999999999999999999999999999999863

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=1.9e-41  Score=285.57  Aligned_cols=205  Identities=20%  Similarity=0.274  Sum_probs=187.2

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHh--cCCeeeEEEeeCCCCCC-----CccCceeEEEEeCCEEEEe
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFV--DGTNVGCFGISEPGSGS-----DAANMLTTARKESDHWVLN   73 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~--~g~~~~~~a~te~~~g~-----~~~~~~~~a~~~~~g~~l~   73 (206)
                      +|+++++.+.+|. ++...|..+|+++|+++|+++++  +|+.++++++|||+.|+     |+..+.++|++++|||+||
T Consensus        86 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~ln  164 (439)
T 2c12_A           86 VEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVIS  164 (439)
T ss_dssp             TCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEE
T ss_pred             hChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEEEEE
Confidence            4889999888886 77778999999999999999999  69999999999999887     5777889999999999999


Q ss_pred             eeeeeeeCCC-----CCCEEEEEEEe-C----CC----CCCCceEEEEeecCCC------CeeeccccccCCCCCCceee
Q psy1303          74 GTKSWITNGY-----EAKAFVCIAQA-D----KS----KKHKGITAFIIPMDSP------GLSLGKKEDKLGIRASSTCN  133 (206)
Q Consensus        74 G~k~~v~~~~-----~a~~~~v~a~~-~----~~----~~~~~~~~~lvp~~~~------gv~~~~~~~~~g~~~~~~~~  133 (206)
                      |+|.|+||+.     .||+++|.+++ +    ++    ++..++++|+||++.|      |+++.+.|+++|++++++++
T Consensus       165 G~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~~~~  244 (439)
T 2c12_A          165 GEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH  244 (439)
T ss_dssp             EEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCCCCE
T ss_pred             eEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCCceE
Confidence            9999999997     89999999998 5    32    2345789999999998      78888999999999999999


Q ss_pred             EEEeceeeCCCCccCCCCccHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccCccccccccccCC
Q psy1303         134 VILEDVKIPLDSVLGKEGEGFK-VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGK-RIAFGAPILKLQAVQLP  206 (206)
Q Consensus       134 v~f~~v~vp~~~~l~~~~~~~~-~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~-R~~~g~~l~~~~~iq~~  206 (206)
                      +.|+||+||++++|+.++.|+. .....+...|+.+++.++|+++++++.+++|+++ |.+||+||+++|.||++
T Consensus       245 v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~  319 (439)
T 2c12_A          245 TRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK  319 (439)
T ss_dssp             EEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHH
T ss_pred             EEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHH
Confidence            9999999999999999899998 8888899999999999999999999999999996 78999999999999874

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=3.9e-41  Score=283.63  Aligned_cols=203  Identities=25%  Similarity=0.398  Sum_probs=184.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcC--CeeeEEEeeCCCCCC-----CccCceeEEEEeCCEEEEee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG--TNVGCFGISEPGSGS-----DAANMLTTARKESDHWVLNG   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g--~~~~~~a~te~~~g~-----~~~~~~~~a~~~~~g~~l~G   74 (206)
                      |+++++.+..|. ++...|..+|+++ +++||+++++|  +.++++++|||+.|+     |+..++++|++++|||+|||
T Consensus        89 ~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~~lnG  166 (438)
T 3mkh_A           89 EPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVING  166 (438)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEEEEEE
T ss_pred             ChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCEEEEEe
Confidence            677888777776 7777888899999 89999999986  589999999999888     58889999999999999999


Q ss_pred             eeeeeeCCC-----CCCEEEEEEEeCC------CCCCCceEEEEeecCC-----CC-eeeccccccCCCCCCceeeEEEe
Q psy1303          75 TKSWITNGY-----EAKAFVCIAQADK------SKKHKGITAFIIPMDS-----PG-LSLGKKEDKLGIRASSTCNVILE  137 (206)
Q Consensus        75 ~k~~v~~~~-----~a~~~~v~a~~~~------~~~~~~~~~~lvp~~~-----~g-v~~~~~~~~~g~~~~~~~~v~f~  137 (206)
                      +|.|+||+.     .||+++|.+++++      .++..++++|+||++.     || +++.+.|+++|+++++++++.|+
T Consensus       167 ~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~~~v~fd  246 (438)
T 3mkh_A          167 EKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYT  246 (438)
T ss_dssp             EECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCCCEEEEE
T ss_pred             EEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCceEEEEC
Confidence            999999997     8999999999853      1234578999999875     88 99999999999999999999999


Q ss_pred             ceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-ccccccccccCC
Q psy1303         138 DVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-APILKLQAVQLP  206 (206)
Q Consensus       138 ~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g-~~l~~~~~iq~~  206 (206)
                      ||+||++++||.++.|+..+...+...|+.+++.++|+++++++.+++|+++|++|| +||++||.||++
T Consensus       247 dv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~  316 (438)
T 3mkh_A          247 NVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADL  316 (438)
T ss_dssp             EEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHH
T ss_pred             cEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHH
Confidence            999999999999999999988999999999999999999999999999999999999 999999999864

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=100.00  E-value=2.2e-39  Score=284.16  Aligned_cols=204  Identities=22%  Similarity=0.328  Sum_probs=178.2

Q ss_pred             CcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----ee
Q psy1303           3 GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----GT   75 (206)
Q Consensus         3 ~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G~   75 (206)
                      ++++..+.+|..++...|..+|+++|+++||+++++|++++|+++|||++|||+..++|+|+++  +|+|+||     |+
T Consensus        94 ~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~  173 (661)
T 2ddh_A           94 RGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSI  173 (661)
T ss_dssp             TTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTS
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeE
Confidence            3456667888767889999999999999999999999999999999999999999999999998  7899999     99


Q ss_pred             eeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeec-C------CCCeeeccccccCCCCCCceeeEEEeceeeCCCCcc
Q psy1303          76 KSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPM-D------SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVL  147 (206)
Q Consensus        76 k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~-~------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l  147 (206)
                      |+|++| +.+||+++|+|++++++++.++.+|+||. +      .|||++.+.|+++|+++++++.+.|+||+||.+++|
T Consensus       174 K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~lL  253 (661)
T 2ddh_A          174 KWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML  253 (661)
T ss_dssp             EECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGBC
T ss_pred             EEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHHhc
Confidence            999999 78999999999986443456889999994 4      799999999999999999999999999999999999


Q ss_pred             CCC------Ccc-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-------cccccccccCC
Q psy1303         148 GKE------GEG-----FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQLP  206 (206)
Q Consensus       148 ~~~------~~~-----~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~-------~l~~~~~iq~~  206 (206)
                      +..      +.+     +......+...|+.+++.++|+++++++.+++|+++|+|||+       ||.++|.+|++
T Consensus       254 g~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~r  330 (661)
T 2ddh_A          254 MKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYK  330 (661)
T ss_dssp             CSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHH
T ss_pred             CcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHH
Confidence            874      322     556667778899999999999999999999999999999998       89999999864

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=100.00  E-value=2.9e-39  Score=283.53  Aligned_cols=203  Identities=24%  Similarity=0.382  Sum_probs=181.2

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G   74 (206)
                      |++++  +.+|..++...|..+|+++|+++|++++++|++++|+++|||++|+|+..++|+|+++  +|+|+||     |
T Consensus        94 ~~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G  171 (659)
T 1w07_A           94 DQPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTA  171 (659)
T ss_dssp             CCCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGG
T ss_pred             ccchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCe
Confidence            34554  7778657888999999999999999999999999999999999999999999999998  6899999     9


Q ss_pred             eeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeec-C------CCCeeeccccccCC---CCCCceeeEEEeceeeCC
Q psy1303          75 TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPM-D------SPGLSLGKKEDKLG---IRASSTCNVILEDVKIPL  143 (206)
Q Consensus        75 ~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~-~------~~gv~~~~~~~~~g---~~~~~~~~v~f~~v~vp~  143 (206)
                      +|.|+++ +..||+++|+|++++++++.++.+|+||. +      .|||++.+.|+++|   +++++++.+.|+||+||.
T Consensus       172 ~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~  251 (659)
T 1w07_A          172 SKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPR  251 (659)
T ss_dssp             SEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEG
T ss_pred             EEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECH
Confidence            9999999 89999999999986544445789999995 5      69999999999999   999999999999999999


Q ss_pred             CCccCC------CCccH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-------ccccccccc
Q psy1303         144 DSVLGK------EGEGF------KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ  204 (206)
Q Consensus       144 ~~~l~~------~~~~~------~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~-------~l~~~~~iq  204 (206)
                      +++|+.      .+.++      ......+...|+.+++.++|+++++++.+++|+++|+|||+       |+.+||.+|
T Consensus       252 ~~lLg~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq  331 (659)
T 1w07_A          252 DQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQ  331 (659)
T ss_dssp             GGBCCSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHH
T ss_pred             HHhcCCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhccHHHH
Confidence            999985      45443      23456678999999999999999999999999999999998       899999998


Q ss_pred             CC
Q psy1303         205 LP  206 (206)
Q Consensus       205 ~~  206 (206)
                      ++
T Consensus       332 ~r  333 (659)
T 1w07_A          332 NR  333 (659)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=100.00  E-value=1.6e-37  Score=266.74  Aligned_cols=193  Identities=24%  Similarity=0.361  Sum_probs=177.9

Q ss_pred             CcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCe-------------eeEEEeeCCCCCCCccCceeEEEEe-CC
Q psy1303           3 GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTN-------------VGCFGISEPGSGSDAANMLTTARKE-SD   68 (206)
Q Consensus         3 ~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~-------------~~~~a~te~~~g~~~~~~~~~a~~~-~~   68 (206)
                      ++.+....+|. .++..|..++ ++|+++|++++.+|+.             +.++++|||++|||+..++|+|+++ +|
T Consensus       129 ~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g  206 (541)
T 3djl_A          129 AGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDG  206 (541)
T ss_dssp             STTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTS
T ss_pred             HhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCC
Confidence            34444455677 6777888889 9999999999999998             7899999999999999999999999 78


Q ss_pred             EEEEeeeeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCC-----CeeeccccccCCCCCCceeeEEEeceeeCC
Q psy1303          69 HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPL  143 (206)
Q Consensus        69 g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~-----gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~  143 (206)
                      +|+|||+|+|+| +.++|+++|+|+++     +++++|+||++.|     ||++.+.|+++|+++++++++.|+||+   
T Consensus       207 ~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gis~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---  277 (541)
T 3djl_A          207 SYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---  277 (541)
T ss_dssp             CEEEEEEEEEEE-CTTSSEEEEEEEET-----TEEEEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---
T ss_pred             eEEEEEEEEeec-ccccCEEEEEEEEC-----CceEEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---
Confidence            899999999999 89999999999985     4899999999998     999999999999999999999999995   


Q ss_pred             CCccCCCCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +++||.++.|+..+..++...|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus       278 ~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~p~vq~~  340 (541)
T 3djl_A          278 GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHV  340 (541)
T ss_dssp             EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCchhhCHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999863

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=1.4e-37  Score=258.69  Aligned_cols=196  Identities=23%  Similarity=0.271  Sum_probs=167.4

Q ss_pred             CCCcchhhhhhhhhhhHHHH--hccCCHHHH---HhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLI--NKFGTKKQK---ETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGT   75 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~   75 (206)
                      +|+++++.+.+|...+..++  ..+|+++||   ++|++++.+|+.++++++|||+.+.  ...+   ++++|||+|||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~lnG~  157 (395)
T 3mxl_A           83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLLSGR  157 (395)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEEEEE
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEEeeE
Confidence            47788888888864444443  467999999   9999999999999999999998652  2222   237889999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccC--CCCcc
Q psy1303          76 KSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLG--KEGEG  153 (206)
Q Consensus        76 k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~--~~~~~  153 (206)
                      |.|+||+.+||+++|.++++++++.+++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++++  ..+.+
T Consensus       158 K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g  237 (395)
T 3mxl_A          158 KVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR  237 (395)
T ss_dssp             EEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCC
T ss_pred             EEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCcc
Confidence            9999999999999999998765556678999999999999999999999999999999999999999999998  66666


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         154 FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +......+...|+.+++.++|+++++++.+++|++     |+|+.++|.+|++
T Consensus       238 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~  285 (395)
T 3mxl_A          238 RDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARAL  285 (395)
T ss_dssp             CTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHH
Confidence            65554445668999999999999999999999998     6689999999864

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=1.4e-36  Score=255.90  Aligned_cols=195  Identities=25%  Similarity=0.357  Sum_probs=162.9

Q ss_pred             CCcchhhhhhhhhhhHHH--HhccCCHHH---HHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeee
Q psy1303           2 CGGTSTILTVHNCLYAGL--INKFGTKKQ---KETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTK   76 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k   76 (206)
                      |+++++++.+|......+  +.++|+++|   |++||+++.+|+.++++++|||+.+  ...+.   ++++|||+|||+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~---t~~~~g~vlnG~K  169 (439)
T 3m9v_A           95 DASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLR---PDGAGGWLLSGRK  169 (439)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEE---ECSSSCEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCcee---eccCCEEEEEeEE
Confidence            677888888886444443  457799999   9999999999999999999999753  32222   2378899999999


Q ss_pred             eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccC--CCCccH
Q psy1303          77 SWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLG--KEGEGF  154 (206)
Q Consensus        77 ~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~--~~~~~~  154 (206)
                      .|+||+.+||+++|.++++++++..++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++|+  ..+.++
T Consensus       170 ~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g~  249 (439)
T 3m9v_A          170 TLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARN  249 (439)
T ss_dssp             EEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CCC
T ss_pred             EeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCchH
Confidence            999999999999999999765556789999999999999999999999999999999999999999999998  666665


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       155 ~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ......+..+|+..++.++|+++++++.+++|++     ++|+.++|.+|++
T Consensus       250 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~~~vq~~  296 (439)
T 3m9v_A          250 DAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE-----RRPEPPQAAALTL  296 (439)
T ss_dssp             GGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TCSSCCCHHHHHH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHH
Confidence            4443335558899999999999999999999998     5689999998863

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=100.00  E-value=5.8e-37  Score=254.88  Aligned_cols=190  Identities=18%  Similarity=0.263  Sum_probs=166.1

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++++.+|. ++..+|..+|+++|+++|++   +|+.+.+++++ |         .+++++++|||+|||+|.|+|
T Consensus        78 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is  143 (394)
T 2rfq_A           78 ACGSTGWVSSIIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSS  143 (394)
T ss_dssp             TCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEET
T ss_pred             hChhHHHHHHHHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccC
Confidence            4788888888887 78888999999999999998   68888999887 3         478999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC--------CC-
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK--------EG-  151 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~--------~~-  151 (206)
                      |+.+||+++|.++++++++++++++|+||++  |+++.+.|+++|+++++++++.||||+||++++++.        ++ 
T Consensus       144 ~a~~Ad~~~v~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~  221 (394)
T 2rfq_A          144 GCDHASWAVLGGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGL  221 (394)
T ss_dssp             TGGGCSEEEEEEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGG
T ss_pred             CCcccceEEEeeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCc
Confidence            9999999999999843222347889999997  899988999999999999999999999999999975        22 


Q ss_pred             ---ccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccCccccccccccCC
Q psy1303         152 ---EGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRI---AFGAPILKLQAVQLP  206 (206)
Q Consensus       152 ---~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~---~~g~~l~~~~~iq~~  206 (206)
                         .++......+...|+..++.++|+++++++.+++|+++|+   +||+||+++|.+|++
T Consensus       222 ~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~  282 (394)
T 2rfq_A          222 ERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVR  282 (394)
T ss_dssp             TTCCCGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHH
T ss_pred             ccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHH
Confidence               2344444567788999999999999999999999999999   999999999999863

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=100.00  E-value=5.8e-37  Score=256.46  Aligned_cols=189  Identities=16%  Similarity=0.170  Sum_probs=164.6

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++++.+|. ++...|..+|+++|+++|++   +|+.+++++++ |         .++|++++|||+|||+|.|+||
T Consensus        92 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~  157 (414)
T 2or0_A           92 DGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSG  157 (414)
T ss_dssp             CHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETT
T ss_pred             ChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCC
Confidence            678888888887 78889999999999999999   69989998887 4         4789999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCC---ceEEEEeecCCCCeeec-cccccCCCCCCceeeEEEeceeeCCCCccCC--------
Q psy1303          82 GYEAKAFVCIAQADKSKKHK---GITAFIIPMDSPGLSLG-KKEDKLGIRASSTCNVILEDVKIPLDSVLGK--------  149 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~---~~~~~lvp~~~~gv~~~-~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~--------  149 (206)
                      +..||+++|.++++++++.+   ++.+|+||++  |+++. +.|+++|+++++++++.||||+||++++++.        
T Consensus       158 a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~  235 (414)
T 2or0_A          158 TDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA  235 (414)
T ss_dssp             GGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHH
T ss_pred             CchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCC
Confidence            99999999999986433333   7899999997  89998 8899999999999999999999999999975        


Q ss_pred             CC----ccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CccccccccccCC
Q psy1303         150 EG----EGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF-GAPILKLQAVQLP  206 (206)
Q Consensus       150 ~~----~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~-g~~l~~~~~iq~~  206 (206)
                      ++    .|+......+...|+.+++.++|+++++++.+++|+++|++| |+||+++|.||++
T Consensus       236 ~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~  297 (414)
T 2or0_A          236 QKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSA  297 (414)
T ss_dssp             HHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHH
T ss_pred             CccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHH
Confidence            21    234444456778999999999999999999999999999999 9999999999863

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=100.00  E-value=5.3e-37  Score=257.28  Aligned_cols=189  Identities=18%  Similarity=0.178  Sum_probs=167.5

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+..|. ++..+|..+|+++|+++|++.   |+.+.+++++ |         .++|++++|||+|||+|.|+||
T Consensus       107 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~  172 (422)
T 2jbr_A          107 CAGTAWAFSLLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSG  172 (422)
T ss_dssp             CHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETT
T ss_pred             CcCHHHHHHHHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecC
Confidence            678888877776 788899999999999999996   8888898877 3         4689999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCC--------Ccc
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE--------GEG  153 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~--------~~~  153 (206)
                      +.+||+++|.++++++++.+++++|+||++  |+++.+.|+++|+++++++++.|+||+||++++++..        +.|
T Consensus       173 a~~Ad~~~v~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g  250 (422)
T 2jbr_A          173 CDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFG  250 (422)
T ss_dssp             GGGCSEEEEEEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTT
T ss_pred             CccccEEEEEEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCccc
Confidence            999999999999864334558899999997  8999889999999999999999999999999999864        444


Q ss_pred             -----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCccccccccccCC
Q psy1303         154 -----FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRI--AFGAPILKLQAVQLP  206 (206)
Q Consensus       154 -----~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~--~~g~~l~~~~~iq~~  206 (206)
                           +......+...|+..++.++|+++++++.+++|+++|+  +||+|++++|.+|++
T Consensus       251 ~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~  310 (422)
T 2jbr_A          251 LYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMR  310 (422)
T ss_dssp             SCTTCSSSSSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHH
T ss_pred             ccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHH
Confidence                 44455667888999999999999999999999999998  999999999999874

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.97  E-value=8.3e-31  Score=222.69  Aligned_cols=183  Identities=19%  Similarity=0.209  Sum_probs=144.8

Q ss_pred             HHHhccCC--HHHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCc-cCceeEEEEeCCEEEEeeeeeeeeCCCCCC
Q psy1303          18 GLINKFGT--KKQKETYLPSFVDGTNVGCFGISEPGSG--------SDA-ANMLTTARKESDHWVLNGTKSWITNGYEAK   86 (206)
Q Consensus        18 ~~l~~~g~--~~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~-~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~   86 (206)
                      .++..+|+  ++|+++||+++++|+++.++++|||+.+        ||+ ...+ ++++++|||+|||+|.|+||+..||
T Consensus       118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            44568999  9999999999999999999999999864        665 3344 8889999999999999999999999


Q ss_pred             EEEEEEEeCCC-CCCCceEEEEeecCCCCeeec---ccccc----------CCC-CC-CceeeEEEeceeeCCCCcc--C
Q psy1303          87 AFVCIAQADKS-KKHKGITAFIIPMDSPGLSLG---KKEDK----------LGI-RA-SSTCNVILEDVKIPLDSVL--G  148 (206)
Q Consensus        87 ~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~---~~~~~----------~g~-~~-~~~~~v~f~~v~vp~~~~l--~  148 (206)
                      +++|+++++.+ +..++.++|+||+++|||++.   +.++.          +|+ +. ..++.+.||||+||++++|  |
T Consensus       197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            99999987532 223457899999999999994   34443          666 53 5678899999999999998  6


Q ss_pred             CCCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         149 KEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ..+.++......+...|+..++.++|.++.++..+......   +|  ++++|.||++
T Consensus       277 ~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g--i~~~q~vq~~  329 (490)
T 1u8v_A          277 EYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG--AQKASHVKDK  329 (490)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chhcHHHHHH
Confidence            77777877667777788877776666666666665543322   44  8899999863

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.97  E-value=1.5e-30  Score=220.67  Aligned_cols=175  Identities=18%  Similarity=0.179  Sum_probs=143.3

Q ss_pred             CHHHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCccCceeEE-EEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeC
Q psy1303          25 TKKQKETYLPSFVDGTNVGCFGISEPGSG--------SDAANMLTTA-RKESDHWVLNGTKSWITNGYEAKAFVCIAQAD   95 (206)
Q Consensus        25 ~~~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~~~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~   95 (206)
                      .+||+++||+++++|+++.++++|||+.|        +|+. +.+++ ++++|||+|||+|.|+|| ..||+++|+++++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            47999999999999999999999999865        5664 44555 478999999999999999 9999999999986


Q ss_pred             CC-CCCCceEEEEeecCCCCeeec--ccccc--------CCCCC-CceeeEEEeceeeCCCCcc--CCCCccHHHH--HH
Q psy1303          96 KS-KKHKGITAFIIPMDSPGLSLG--KKEDK--------LGIRA-SSTCNVILEDVKIPLDSVL--GKEGEGFKVG--LT  159 (206)
Q Consensus        96 ~~-~~~~~~~~~lvp~~~~gv~~~--~~~~~--------~g~~~-~~~~~v~f~~v~vp~~~~l--~~~~~~~~~~--~~  159 (206)
                      ++ +...++++|+||+++||+++.  +.+..        +|.+. ..++.+.||||+||++++|  |..+.++...  ..
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~  279 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG  279 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence            32 233468899999999999994  33432        46664 6788999999999999998  5555555443  56


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...|+..++..+|.++.++..+..++..   +|  |+++|.||++
T Consensus       280 ~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q~vq~~  321 (481)
T 2yyk_A          280 ALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADVYGHVQEK  321 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhHHHHHH
Confidence            778899999999999999999999888764   44  9999999863

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.96  E-value=3.2e-28  Score=206.89  Aligned_cols=176  Identities=15%  Similarity=0.145  Sum_probs=130.1

Q ss_pred             cCC--HHHHHhhhhHHhcCCeeeEEEeeCCCC--------CCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEE
Q psy1303          23 FGT--KKQKETYLPSFVDGTNVGCFGISEPGS--------GSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIA   92 (206)
Q Consensus        23 ~g~--~~q~~~~l~~i~~g~~~~~~a~te~~~--------g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a   92 (206)
                      +++  .+|+++||+++++|+++.++++|||+.        |+|+ .+.+ ..+++|||+|||.|.|+|++..||+++|++
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~-~~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRI-VEKTDDGIIVNGVKAVGTGIAFGDYMHIGC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEE-EEECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEE-EEEECCEEEEEEEEEEECCccccCEEEEEE
Confidence            554  589999999999999999999999985        4677 4443 345689999999999999999999999999


Q ss_pred             EeCC-CCCCCceEEEEeecCCCCeeeccccccCCC-----CC-----CceeeEEEeceeeCCCCcc--CCCCccHHHHHH
Q psy1303          93 QADK-SKKHKGITAFIIPMDSPGLSLGKKEDKLGI-----RA-----SSTCNVILEDVKIPLDSVL--GKEGEGFKVGLT  159 (206)
Q Consensus        93 ~~~~-~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~-----~~-----~~~~~v~f~~v~vp~~~~l--~~~~~~~~~~~~  159 (206)
                      ++++ .++. .+++|+||+++||+++...|..+|.     +.     ..++.+.||||+||++++|  |..+.|+..+..
T Consensus       205 ~t~~~~~~~-~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~  283 (515)
T 3hwc_A          205 LYRPGIPGE-QVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQR  283 (515)
T ss_dssp             CCCTTCCGG-GCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHH
T ss_pred             EecCCCCCC-eEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHH
Confidence            8732 2223 3889999999999999766666552     22     2378999999999999999  788888866544


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      .+...+....+..+|.++.++..+..++.   .+|  |++||.||++
T Consensus       284 ~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~k  325 (515)
T 3hwc_A          284 IFDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSAR  325 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHH
Confidence            34333222223444555555554444432   244  8999999874

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=99.88  E-value=6.9e-22  Score=168.24  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=135.9

Q ss_pred             HHHHhhhhHHhcCCeeeEEEeeCCCCCCCc-----cCc-eeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeCCCCCC
Q psy1303          27 KQKETYLPSFVDGTNVGCFGISEPGSGSDA-----ANM-LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKH  100 (206)
Q Consensus        27 ~q~~~~l~~i~~g~~~~~~a~te~~~g~~~-----~~~-~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~  100 (206)
                      +-..+|+..+.++++..+.++++|......     ..+ -...++++|||+|||.|.|+||+..||+++|++++.+..+.
T Consensus       134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~  213 (517)
T 4g5e_A          134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG  213 (517)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred             HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence            556789999999999999999998531111     011 12456678999999999999999999999999988765556


Q ss_pred             CceEEEEeecCCCCeeeccccccCCCCCC----------ceeeEEEeceeeCCCCcc--CCCCccHHHHHHhhhhHHHHH
Q psy1303         101 KGITAFIIPMDSPGLSLGKKEDKLGIRAS----------STCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGM  168 (206)
Q Consensus       101 ~~~~~~lvp~~~~gv~~~~~~~~~g~~~~----------~~~~v~f~~v~vp~~~~l--~~~~~~~~~~~~~~~~~~~~~  168 (206)
                      ++.+.|+||.++||+++.......+.+..          ..+.+.||||+||+++++  |..+.++......+...+...
T Consensus       214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~  293 (517)
T 4g5e_A          214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA  293 (517)
T ss_dssp             GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence            67889999999999998433333332221          236799999999999987  777777777777888889888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         169 ASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       169 aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ++..++.++.++..+..++..   +|  +.+||+||++
T Consensus       294 ~~~~~~~~~~~~g~a~~~ae~---~G--i~~fq~Vq~k  326 (517)
T 4g5e_A          294 LIRQSVRAELMAGLAILITEH---IG--TNKIPAVQTR  326 (517)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HT--CTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hC--CcccHHHHHH
Confidence            889999999999888887754   34  8899999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	2e-49
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	1e-39
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	3e-39
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	2e-38
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	2e-37
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	1e-36
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	4e-35
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	7e-34
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	5e-33
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	4e-31
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	8e-25
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	4e-18
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	2e-17
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	6e-09
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	6e-08
d1ukwa1	152	a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro	1e-07
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	2e-07
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	5e-07
d2c12a1	170	a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium	1e-06
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	5e-06
d3mdea1	154	a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro	7e-06
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	9e-06
d1w07a1	189	a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do	1e-05
d1siqa1	154	a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC	3e-05
d2ddha1	183	a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-	4e-04

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (401), Expect = 2e-49
 Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
             G        H+ L    + + G + QKE YLP  + G  +G   +SEP +GSD  +M 
Sbjct: 84  ASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMK 143

Query: 61  TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK--SKKHKGITAFIIPMDSPGLSLG 118
             A K+ +H++LNG K WITNG +A   +  A+ D       +GITAFI+    PG S  
Sbjct: 144 LKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTS 203

Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKE 150
           KK DKLG+R S+TC +I ED KIP  ++LG E
Sbjct: 204 KKLDKLGMRGSNTCELIFEDCKIPAANILGHE 235

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  133 bits (335), Expect = 1e-39
 Identities = 82/141 (58%), Positives = 110/141 (78%)

Query: 11  VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
           V+N LY G I KFG+ +QK+ ++  F +G  +GCF +SEPG+GSDA    TTAR+E D W
Sbjct: 91  VNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSW 150

Query: 71  VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
           VLNGTK+WITN +EA A V  A  D+S+++KGI+AF++PM +PGL+LGKKEDKLGIRASS
Sbjct: 151 VLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASS 210

Query: 131 TCNVILEDVKIPLDSVLGKEG 151
           T N+I ED +IP +++LG+ G
Sbjct: 211 TANLIFEDCRIPKENLLGEPG 231

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  132 bits (333), Expect = 3e-39
 Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 3/142 (2%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
            N L    +   G  +Q++ YL    +   +  + ++EPG+GSD A + T A K+ D ++
Sbjct: 90  ANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 149

Query: 72  LNGTKSWITNGYEAKAFVCI---AQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
           +NG K WITNG +A  +  +       K+   K  T FI+  D+PG+ +G+KE  +G R 
Sbjct: 150 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 209

Query: 129 SSTCNVILEDVKIPLDSVLGKE 150
           S T  ++ EDV++P ++VL  E
Sbjct: 210 SDTRGIVFEDVRVPKENVLTGE 231

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  130 bits (326), Expect = 2e-38
 Identities = 56/140 (40%), Positives = 86/140 (61%)

Query: 11  VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
           + + L    +   GT++QKE +L    +   +  F +SEPG+GSDAA + T A ++ DH+
Sbjct: 88  MASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHY 147

Query: 71  VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
           VLNGTK WI+NG EA+  V  A  +   +HKG+ A ++   +PG    K   K+G RAS 
Sbjct: 148 VLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASG 207

Query: 131 TCNVILEDVKIPLDSVLGKE 150
           T  ++ EDVK+P+++ LG+E
Sbjct: 208 TYELVFEDVKVPVENRLGEE 227

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  128 bits (321), Expect = 2e-37
 Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 4/142 (2%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
           HN L  G I   G++ QKE +LP    G  +G +G++EPGSGSDAA + T A K    W 
Sbjct: 91  HNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWR 150

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSK----KHKGITAFIIPMDSPGLSLGKKEDKLGIR 127
           LNGTK +IT G  A  +V +A+ D       KH+GI+AF       GL +G+KE+KLG+ 
Sbjct: 151 LNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLT 210

Query: 128 ASSTCNVILEDVKIPLDSVLGK 149
           AS T  +ILED+ +P +++LG+
Sbjct: 211 ASDTAQLILEDLFVPEEALLGE 232

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-36
 Identities = 49/139 (35%), Positives = 85/139 (61%), Gaps = 1/139 (0%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
            + + A +I+ FG ++Q+  + P          + ++EPGSGSDAA++LT+A+K+ DH++
Sbjct: 94  IHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYI 153

Query: 72  LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
           LNG+K++I+   E+  +V + +       KGI+  ++   +PGLS GKKE K+G  +  T
Sbjct: 154 LNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPT 212

Query: 132 CNVILEDVKIPLDSVLGKE 150
             VI ED  +P+ + +G E
Sbjct: 213 RAVIFEDCAVPVANRIGSE 231

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score =  121 bits (304), Expect = 4e-35
 Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 1/140 (0%)

Query: 12  HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HW 70
              L A  I +FGT+ QKE +L   V+GT +G FG++EP +G+DA+   T A K  D  +
Sbjct: 93  TVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTY 152

Query: 71  VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
            LNG+K +ITNG  A  ++  A  DKSK + GITAFI+   +PG + GKKEDK+GI  S 
Sbjct: 153 TLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQ 212

Query: 131 TCNVILEDVKIPLDSVLGKE 150
           T  ++ +DVK+P +++LG+E
Sbjct: 213 TMELVFQDVKVPAENMLGEE 232

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (300), Expect = 7e-34
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 4   GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
                + +H  ++   I   GT++Q++ +L        +GC+  +E G GS+   + TTA
Sbjct: 93  DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 152

Query: 64  RKESDH-------WVLNGTKSWITNGYE-AKAFVCIAQADKSKKHKGITAFIIPMDS--- 112
             +               +K W     + +   V  A+   + K  GI  FI+ + S   
Sbjct: 153 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 212

Query: 113 ----PGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160
               P +++G    K+G     +     ++ + V+IP D +L +     KV   G
Sbjct: 213 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS---KVTREG 264

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (293), Expect = 5e-33
 Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
             G    L +H  ++   +    T +Q+E +     +    G +  +E G G+    + T
Sbjct: 93  HRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLET 152

Query: 62  TARKE--SDHWVLN-----GTKSWITNGYE-AKAFVCIAQADKSKKHKGITAFIIPMDS- 112
           TA  +  +  ++LN       K W     + +   + +AQ     +  G+ AF++P+   
Sbjct: 153 TATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI 212

Query: 113 ------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160
                 PG+++G    K G        + +++ +IP +++L K     +V   G
Sbjct: 213 GTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYA---QVKPDG 263

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score =  112 bits (282), Expect = 4e-31
 Identities = 29/173 (16%), Positives = 50/173 (28%), Gaps = 27/173 (15%)

Query: 1   GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
            C G      V +     +  K+GT   K    YL    +   +    +++P      A 
Sbjct: 102 RCVGMDAFNAVFST-TYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAP 160

Query: 59  M--------LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKS-KKHKGITAFIIP 109
                    L    K  D  V+ G K+  T    +   + +     +        +F  P
Sbjct: 161 SAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACP 220

Query: 110 MDSPGLSLGKKEDKLGIRASST---------------CNVILEDVKIPLDSVL 147
            D+ GL +         R                     V+ ++V IP D + 
Sbjct: 221 SDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF 273

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (235), Expect = 8e-25
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 2   CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
             G  + ++V + L    I  +G+++Q++ YLP    G  +GCFG++EP SGSD ++M T
Sbjct: 88  DSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMET 147

Query: 62  TARK--ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
            A     +  + LNGTK+WITN   A  FV  A+ +       I  F++     GLS  +
Sbjct: 148 RAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRGLSAPR 203

Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEG 151
            + K  +RAS+T  +I++ V++P ++VL    
Sbjct: 204 IQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 76.7 bits (187), Expect = 4e-18
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 44  CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGI 103
             G SE  +GSD + M T  R + D  V++G K W T       +         ++    
Sbjct: 106 AVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAA----YADHLVVFGLQEDGSG 161

Query: 104 TAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG 151
              ++P D+PG+ + +     G RA+   ++ L+ V++P  +VL   G
Sbjct: 162 AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG 209

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 75.6 bits (184), Expect = 2e-17
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 42  VGCFGISEPGSGS-----DAANMLTTARKESDHWVLNGTKSWITNGYEA-----KAFVCI 91
           +     SEP   +         + TTARK  + WV++G K W +N              +
Sbjct: 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 186

Query: 92  AQAD---------KSKKHKGITAFIIPMDSPGLS------LGKKEDKLGIRASSTCNVIL 136
            +                  I   ++  ++   +      +  + +  G   +S  +   
Sbjct: 187 CRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRF 246

Query: 137 EDVKIPLDSVLG 148
            +  +P +++L 
Sbjct: 247 TEFHVPHENLLC 258

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.7 bits (120), Expect = 6e-09
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           G+GF   L  +D  RIG+A+  +G+ QAA D A+ YA  R AFG PI + + V 
Sbjct: 1   GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           GFK+ +  +D  RIG+ASQ +GIAQA+ DCA++YA  R AFGAP+ KLQ +Q
Sbjct: 2   GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 53

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           GEGFK+ +  ++  RI +A+  +G+A+ A D A +YA +R AFG PI   QA+Q
Sbjct: 1   GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQ 54

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPI 197
           G+GF + + G++  RI +AS  +G A A+     ++   R  FG P+
Sbjct: 1   GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPL 47

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 45.3 bits (106), Expect = 5e-07
 Identities = 24/52 (46%), Positives = 38/52 (73%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQA 202
           G+GFK+ +  +D  RIG+A+Q +GIA+AA   A+EY+ +R+ FG P+ K Q+
Sbjct: 1   GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQS 52

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 148 GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP 196
           G + +G     T    +   + +  IG A+AAF+ A+ +A      G+ 
Sbjct: 2   GLKAQGLV--ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSK 48

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG 194
              +   R  +A   +GI +A    A+ +A  R  FG
Sbjct: 7   AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFG 43

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
           G GFK+ +   D  R  +A+  +G+AQ A D A +YA +R  FG  + + Q + 
Sbjct: 1   GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGIS 54

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 9e-06
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF 193
           G  V ++G+D  R+ +A   +G+ QA  D  + Y   R AF
Sbjct: 2   GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAF 42

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
           ++    +   R  + +        A   A  Y+  R  FGA        ++  +  Q
Sbjct: 3   QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQ 59

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
                 ++ AR G+A   +G ++     A +YA  R+ FG P+ + Q +Q
Sbjct: 2   GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQ 51

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 7/48 (14%)

Query: 164 ARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
            R  +          A   A+ Y+  R             IL  Q  Q
Sbjct: 4   VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQ 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.97
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	99.97
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.97
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.9
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	98.95
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	98.94
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	98.93
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	98.93
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	98.92
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	98.9
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	98.83
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	98.81
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	98.8
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	98.76

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-35  Score=224.89  Aligned_cols=147  Identities=40%  Similarity=0.658  Sum_probs=136.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++++..|. .+...|..+++++||++|++++.+|++++++++|||++|+|+..++|+|++++|||+|||+|.|+++
T Consensus        80 ~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~  158 (227)
T d1ukwa2          80 CMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISN  158 (227)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             cccccccccccc-cchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCc
Confidence            455667777777 7788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      +..||+++|.++++++.+..++++|+||++.||+++.+.|+++|+|+++++++.|+||+||++++||+
T Consensus       159 ~~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGe  226 (227)
T d1ukwa2         159 GGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE  226 (227)
T ss_dssp             TTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESC
T ss_pred             cccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCC
Confidence            99999999999987655667899999999999999999999999999999999999999999999985

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.6e-35  Score=224.76  Aligned_cols=150  Identities=57%  Similarity=1.021  Sum_probs=138.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |.+.++.+.+|...+...|..+++++||++||+++++|+.++++++|||++|+|+..+.|+|++++|+|+|||+|.|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~  161 (231)
T d1jqia2          82 CASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITN  161 (231)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEET
T ss_pred             ccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEee
Confidence            44566666767757788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCC
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG  151 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~  151 (206)
                      +..++++++.++.+++++..++.+|+||++.||+++.+.|+++|+|+++++++.||||+||++++||.+|
T Consensus       162 ~~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         162 SWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             TTTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             cccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            9999999999998765566789999999999999999999999999999999999999999999999764

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-35  Score=224.78  Aligned_cols=149  Identities=42%  Similarity=0.733  Sum_probs=138.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|..+++..|.++|+++||++||+++++|++++++|+|||++|+|+..+.|+|++++|||+|||+|+|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  164 (236)
T d1ivha2          85 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN  164 (236)
T ss_dssp             CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             hhccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeC
Confidence            67788888888767888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCC--CCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCC
Q psy1303          82 GYEAKAFVCIAQADK--SKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE  150 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~--~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~  150 (206)
                      +..+++++|.|+++.  .+...++.+|+||++.||+++.+.|+++|+++++++.+.|+||+||++++||..
T Consensus       165 ~~~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~fd~v~Vp~~~llGee  235 (236)
T d1ivha2         165 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE  235 (236)
T ss_dssp             GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             CccccccccccccccccccccCccEEEEEeCCCCceEeCCCcCcccCCCCceEEEEEeeEEEcHHHcCCCC
Confidence            999999999999863  234568999999999999999999999999999999999999999999999864

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.7e-34  Score=221.71  Aligned_cols=147  Identities=34%  Similarity=0.617  Sum_probs=135.5

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+..|. .....|..+++++|+++|++++++|++++++++|||++|||+..++|+|++++|||+|||+|+|+|+
T Consensus        81 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~  159 (231)
T d3mdea2          81 CTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  159 (231)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             cccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCC
Confidence            556777777777 7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCC---CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303          82 GYEAKAFVCIAQADKSK---KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~---~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      +..++++++++++++++   ...++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.
T Consensus       160 ~~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         160 GGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             TTTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             chhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            99999999999986432   235788999999999999999999999999999999999999999999984

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-34  Score=220.46  Aligned_cols=148  Identities=43%  Similarity=0.721  Sum_probs=137.6

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++.+.+|......++.++++++|+++||+++.+|+.++++|+|||+.|+|+..++++|++++|+|+|||+|+|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~  160 (233)
T d2d29a2          81 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  160 (233)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ccccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceecccc
Confidence            56778888888767778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCC----CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303          82 GYEAKAFVCIAQADKSK----KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~----~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      +.++|+++|.|++.+++    +..++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++||+
T Consensus       161 ~~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         161 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             ccccccccccccccCCccccccccCceEEEEEcCCCCcEECCcccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            99999999999987532    246789999999999999999999999999999999999999999999985

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=220.87  Aligned_cols=146  Identities=35%  Similarity=0.625  Sum_probs=132.9

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEE--EEeCCEEEEeeeeeee
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA--RKESDHWVLNGTKSWI   79 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a--~~~~~g~~l~G~k~~v   79 (206)
                      +.+.+..+.+|..++...+.++++++||++||+++++|++++++|+|||+.|+|.....+++  ++++|+|+|||+|.||
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~~v  167 (236)
T d1siqa2          88 DSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWI  167 (236)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEE
T ss_pred             ccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEeccccccE
Confidence            44566667777657788999999999999999999999999999999999999999988877  6678899999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCC
Q psy1303          80 TNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG  151 (206)
Q Consensus        80 ~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~  151 (206)
                      +++..||+++|.|++++    .++++|+||.+.||+++.+.++++|+|+++++.+.||||+||++++||..+
T Consensus       168 t~a~~Ad~~~V~art~~----~~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~~  235 (236)
T d1siqa2         168 TNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS  235 (236)
T ss_dssp             ETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCC
T ss_pred             ecCCCceEEEEEecccC----CcceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCCC
Confidence            99999999999999865    468899999999999999999999999999999999999999999998653

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=1.4e-33  Score=213.94  Aligned_cols=144  Identities=26%  Similarity=0.499  Sum_probs=134.0

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN   81 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~   81 (206)
                      |+++++++..|. .+..+|..+++++||++|++++++|++ .+++++||..|+|...++|++++++|+|+|||+|.|+++
T Consensus        66 ~~~~~~~~~~~~-~~~~~l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~  143 (210)
T d1r2ja2          66 CSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTA  143 (210)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETT
T ss_pred             cccccccccccc-ccchhhhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeeccccc
Confidence            778899999998 888899999999999999999999985 578999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCC
Q psy1303          82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG  151 (206)
Q Consensus        82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~  151 (206)
                      +.+||+++|.++.++    .+..+|+||++.||+++.+.|+++|+++++++++.|+||+||++++||.+|
T Consensus       144 a~~Ad~~~v~a~~~~----~~~~~~lv~~~~~Gv~v~~~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~G  209 (210)
T d1r2ja2         144 AAYADHLVVFGLQED----GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG  209 (210)
T ss_dssp             TTTCSEEEEEEBCSS----SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTT
T ss_pred             ccccccccceeeecC----CCceEEeecCCCCCeEeccCCCcccCCCCCeEEEEEeeEEECHHHCcCCCC
Confidence            999999999999764    355799999999999999999999999999999999999999999999876

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=214.83  Aligned_cols=147  Identities=36%  Similarity=0.726  Sum_probs=137.5

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT   80 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~   80 (206)
                      +|+++++.+..|. .++..+..+++++|+++|++++.+|+..+++++|||+.|+|+..+.|+|++++|+|+|||+|.|+|
T Consensus        84 ~~~~~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs  162 (231)
T d1rx0a2          84 GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFIS  162 (231)
T ss_dssp             TCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hcccccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEcccc
Confidence            3677788888887 888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303          81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK  149 (206)
Q Consensus        81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~  149 (206)
                      ++.+||+++|.++.++ ++.+++++|+||++.|||++.+.|+++|||+++++.+.|+||+||++++||.
T Consensus       163 ~~~~Ad~~~v~a~~~~-~~~~~~~~~lv~~d~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~  230 (231)
T d1rx0a2         163 GAGESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGS  230 (231)
T ss_dssp             TTTTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             CCCcCCEEEEEEeecC-CCCCceEEEEEeCCCCceEecCccCccccCCCceEEEEEccEEEcHHHEeCC
Confidence            9999999999999754 3456899999999999999999999999999999999999999999999985

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=1.4e-32  Score=211.22  Aligned_cols=136  Identities=47%  Similarity=0.804  Sum_probs=128.6

Q ss_pred             hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCE-EEEeeeeeeeeCCCCCCEEEEEEE
Q psy1303          15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDH-WVLNGTKSWITNGYEAKAFVCIAQ   93 (206)
Q Consensus        15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g-~~l~G~k~~v~~~~~a~~~~v~a~   93 (206)
                      +....+..+++++|+++|++++.+|++++++++|||++|+|...+.|++++++|| |+|||+|+||+++..||+++|.++
T Consensus        96 ~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~vt~a~~ad~~~v~a~  175 (232)
T d1buca2          96 LCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAM  175 (232)
T ss_dssp             HTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred             hhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEeeecccccceEEEEEEE
Confidence            5667899999999999999999999999999999999999999999999999875 999999999999999999999999


Q ss_pred             eCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCC
Q psy1303          94 ADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE  150 (206)
Q Consensus        94 ~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~  150 (206)
                      .+++++..++++|+||+++|||++.+.|+++|+|+++++.+.|+||+||++++||+.
T Consensus       176 ~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         176 TDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             SCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             ecCCCCCceeEEEEEeCCCCceEeCCccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            887667788999999999999999999999999999999999999999999999863

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.8e-32  Score=212.26  Aligned_cols=150  Identities=22%  Similarity=0.383  Sum_probs=134.4

Q ss_pred             CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeC--CEEEEee-----
Q psy1303           2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES--DHWVLNG-----   74 (206)
Q Consensus         2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~G-----   74 (206)
                      +++.+..+.+|.+++...|..+|+++||++||+++++|++++|+|+|||++|||+..++|+|++++  |+|+|||     
T Consensus        93 ~~~~~~~~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~  172 (267)
T d2ddha3          93 HRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTS  172 (267)
T ss_dssp             HTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTT
T ss_pred             ccCCCceehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccce
Confidence            356677778888788889999999999999999999999999999999999999999999999875  6799999     


Q ss_pred             eeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeec-------CCCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303          75 TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPM-------DSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV  146 (206)
Q Consensus        75 ~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~-------~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~  146 (206)
                      .|+|+++ +..|++++|+|++.+++...++++|+||.       +.|||++.+.++++|+++++++.+.|+||+||.+++
T Consensus       173 ~K~wit~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~~~~~~~~~pGv~v~~~~~~~G~~~~~~~~i~fd~V~VP~~~l  252 (267)
T d2ddha3         173 IKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENM  252 (267)
T ss_dssp             SEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGB
T ss_pred             eeecCCCCcccCCEEEEeeeccCCCCCCccEEEEEEecCcCccCCCCCeEeccCCCccccCCCceEEEEEeeEEECHHHh
Confidence            6999998 67899999999998665667899999994       458999999999999999999999999999999999


Q ss_pred             cCCCC
Q psy1303         147 LGKEG  151 (206)
Q Consensus       147 l~~~~  151 (206)
                      |+..+
T Consensus       253 L~~~~  257 (267)
T d2ddha3         253 LMKYA  257 (267)
T ss_dssp             CCSSC
T ss_pred             CCCcC
Confidence            97543

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=99.97  E-value=2.8e-31  Score=207.22  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=129.9

Q ss_pred             CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhc--CCeeeEEEeeCCCCCCCcc-----CceeEEEEeCCEEEEe
Q psy1303           1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVD--GTNVGCFGISEPGSGSDAA-----NMLTTARKESDHWVLN   73 (206)
Q Consensus         1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~--g~~~~~~a~te~~~g~~~~-----~~~~~a~~~~~g~~l~   73 (206)
                      +|+++++.+.+|. ++...|..+++++|+++||+++++  |++++++++|||++|||..     .++|+|++++|+|+||
T Consensus        85 ~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~vln  163 (259)
T d2c12a2          85 VEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVIS  163 (259)
T ss_dssp             TCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEE
T ss_pred             ccccccccccccc-chHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccchhccc
Confidence            4889999999988 888889999999999999999986  7899999999999999975     4778999999999999


Q ss_pred             eeeeeeeCC-----CCCCEEEEEEEeCCCC---------CCCceEEEEeecCCCCeee------ccccccCCCCCCceee
Q psy1303          74 GTKSWITNG-----YEAKAFVCIAQADKSK---------KHKGITAFIIPMDSPGLSL------GKKEDKLGIRASSTCN  133 (206)
Q Consensus        74 G~k~~v~~~-----~~a~~~~v~a~~~~~~---------~~~~~~~~lvp~~~~gv~~------~~~~~~~g~~~~~~~~  133 (206)
                      |+|+|+||+     ..||+++|+|++++++         ...++++|+||++.||+++      ...++++|++++++++
T Consensus       164 G~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~~~g~~~~~~~~~~~~~~~~G~~~~~~~~  243 (259)
T d2c12a2         164 GEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH  243 (259)
T ss_dssp             EEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCCCCE
T ss_pred             eeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCCCCCcccCCCeeecCcccccccccCceEE
Confidence            999999998     4588999999987532         2367899999998876554      3468999999999999


Q ss_pred             EEEeceeeCCCCccC
Q psy1303         134 VILEDVKIPLDSVLG  148 (206)
Q Consensus       134 v~f~~v~vp~~~~l~  148 (206)
                      +.|+||+||++++||
T Consensus       244 v~f~dv~Vp~~~llG  258 (259)
T d2c12a2         244 TRFTEFHVPHENLLC  258 (259)
T ss_dssp             EEEEEEEEEGGGBCS
T ss_pred             EEEeeEEECHHHeeC
Confidence            999999999999997

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.1e-30  Score=204.16  Aligned_cols=145  Identities=25%  Similarity=0.433  Sum_probs=130.3

Q ss_pred             hhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEee-----eeeee
Q psy1303           7 TILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLNG-----TKSWI   79 (206)
Q Consensus         7 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~G-----~k~~v   79 (206)
                      ..+.+|..++...|..+|+++||++|||++.+|++++|+|+|||++|||+..++|+|+++  +++|+|||     .|+|+
T Consensus        96 ~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi  175 (271)
T d1w07a3          96 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP  175 (271)
T ss_dssp             CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECC
T ss_pred             hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeecc
Confidence            356678878889999999999999999999999999999999999999999999999987  67899999     79999


Q ss_pred             eC-CCCCCEEEEEEEeCCCCCCCceEEEEee-------cCCCCeeeccccccCC---CCCCceeeEEEeceeeCCCCccC
Q psy1303          80 TN-GYEAKAFVCIAQADKSKKHKGITAFIIP-------MDSPGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLG  148 (206)
Q Consensus        80 ~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp-------~~~~gv~~~~~~~~~g---~~~~~~~~v~f~~v~vp~~~~l~  148 (206)
                      ++ +..|++++|++++.++++..++.+|+||       .+.|||++.+..+++|   +++.+++.+.||||+||.+++||
T Consensus       176 ~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg  255 (271)
T d1w07a3         176 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLM  255 (271)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCC
T ss_pred             CCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHcCC
Confidence            98 6679999999999766666789999999       4558999988888887   67889999999999999999998


Q ss_pred             CCC
Q psy1303         149 KEG  151 (206)
Q Consensus       149 ~~~  151 (206)
                      ..+
T Consensus       256 ~~g  258 (271)
T d1w07a3         256 RLS  258 (271)
T ss_dssp             SSE
T ss_pred             CCC
Confidence            765

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.90  E-value=1.2e-24  Score=170.14  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=113.3

Q ss_pred             hhHHHHhccCCH--HHHHhhhhHHhcCCeeeEEEeeCCCCCCCccC--------ceeEEEEeCCEEEEeeeeeeeeCCCC
Q psy1303          15 LYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSGSDAAN--------MLTTARKESDHWVLNGTKSWITNGYE   84 (206)
Q Consensus        15 ~~~~~l~~~g~~--~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~--------~~~~a~~~~~g~~l~G~k~~v~~~~~   84 (206)
                      .....+..++++  +++++|++.+.+++++.+.++|||..+++...        ..+.++++++||+|||.|.|+|++..
T Consensus       115 ~~~~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~  194 (275)
T d1u8va2         115 TTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSIN  194 (275)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTT
T ss_pred             HHHHHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCc
Confidence            344566688887  88899999999999999999999998887553        34677888999999999999999999


Q ss_pred             CCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCce---------------eeEEEeceeeCCCCcc
Q psy1303          85 AKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST---------------CNVILEDVKIPLDSVL  147 (206)
Q Consensus        85 a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~---------------~~v~f~~v~vp~~~~l  147 (206)
                      ||+++|++++... ++.++.+.|+||.++||+++...++.+|++++.+               +.+.||||+||+|+++
T Consensus       195 ad~~~v~~~~~~~~~~~~~~~~f~Vp~~tpGv~~~~~~~~~~~r~~~~~~~~~~~s~~f~e~da~vvFddV~VP~e~Vf  273 (275)
T d1u8va2         195 SHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF  273 (275)
T ss_dssp             CSEEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEE
T ss_pred             cceEEEEeccCCCCCCCCcEEEEEEeCCCCCeEEecccCCcCCcccCCCCCccccccccCCceeEEEeceEECcHHHee
Confidence            9999999987643 3456788999999999999988899998887654               4599999999999875

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-10  Score=80.75  Aligned_cols=56  Identities=30%  Similarity=0.513  Sum_probs=53.3

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+||..+...++..|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~R~~~G~~~~~~~~v~~~   56 (153)
T d1rx0a1           1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFT   56 (153)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhhhH
Confidence            57899999999999999999999999999999999999999999999999999863

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=2.6e-10  Score=80.33  Aligned_cols=56  Identities=43%  Similarity=0.705  Sum_probs=53.4

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+||..+...|+..|+.+++.++|.++++++.+++|+++|++||+||+++|.+|++
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~a~~~~~~a~~y~~~R~~~g~~l~~~~~v~~~   56 (153)
T d2d29a1           1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFK   56 (153)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHhcchhhh
Confidence            57899999999999999999999999999999999999999999999999999863

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=3e-10  Score=80.16  Aligned_cols=55  Identities=35%  Similarity=0.563  Sum_probs=52.9

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL  205 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~  205 (206)
                      |+||..+...++..|+.+++.++|.++++++.+++|+++|++||+|+.++|.+|+
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~~~~a~~~a~~~a~~R~~~g~pl~~~~~v~~   55 (154)
T d3mdea1           1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISF   55 (154)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhHHHH
Confidence            5799999999999999999999999999999999999999999999999999986

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=80.69  Aligned_cols=54  Identities=33%  Similarity=0.471  Sum_probs=51.9

Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ||.++...++..|+.+++.++|+++++++.+++|+++|.+||+||.+||.+|++
T Consensus         2 G~~~~~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~r~~~g~pl~~~~~vq~~   55 (151)
T d1ivha1           2 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGK   55 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHH
Confidence            788899999999999999999999999999999999999999999999999863

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=3.6e-10  Score=79.61  Aligned_cols=54  Identities=56%  Similarity=0.970  Sum_probs=51.6

Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      ||.++...|+..|+.+++.++|.++++++.+++|+++|++||+|+.++|.+|++
T Consensus         2 G~~~~~~~L~~~R~~~aa~~~G~~~~al~~a~~ya~~r~~fG~pl~~~~~v~~~   55 (153)
T d1jqia1           2 GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFK   55 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccchhhh
Confidence            788899999999999999999999999999999999999999999999999863

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.1e-10  Score=80.23  Aligned_cols=49  Identities=29%  Similarity=0.455  Sum_probs=46.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       158 ~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +..++..|+.+++.++|+++++++.+++|+++|++||+||.+||.||++
T Consensus         5 ~~~Ln~~R~~iaa~~lG~a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~   53 (154)
T d1siqa1           5 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKK   53 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999874

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=98.83  E-value=9.4e-10  Score=78.93  Aligned_cols=51  Identities=25%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-ccccccccccCC
Q psy1303         156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-APILKLQAVQLP  206 (206)
Q Consensus       156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g-~~l~~~~~iq~~  206 (206)
                      .+...++..|+.++++++|++++|++++++|+++|++|| +||.+||.||++
T Consensus         8 ~~~~~~~~~r~~vaa~alG~a~~al~~a~~ya~~R~~fG~kpl~~~q~vq~~   59 (170)
T d2c12a1           8 LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK   59 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcccchhhhhhc
Confidence            466789999999999999999999999999999999998 799999999863

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=98.81  E-value=1.4e-09  Score=76.21  Aligned_cols=55  Identities=44%  Similarity=0.852  Sum_probs=52.9

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL  205 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~  205 (206)
                      |+||..+...++..|+.+++.++|.++++++.+++|+++|.+||+|+.++|.+|+
T Consensus         1 G~G~~~~~~~l~~~R~~~~~~~~G~~~~~l~~a~~~a~~r~~~g~~l~~~~~v~~   55 (151)
T d1buca1           1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISF   55 (151)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhhhhhHHh
Confidence            5789999999999999999999999999999999999999999999999999985

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=1.9e-09  Score=75.72  Aligned_cols=56  Identities=43%  Similarity=0.742  Sum_probs=53.3

Q ss_pred             CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      |+||..+...++..|+..++.++|.++.+++.+++|+++|.+||+|+.++|.+|++
T Consensus         1 G~G~~~~~~~L~~eR~~~a~~~~G~~~~~l~~~~~~a~~r~~~g~~l~~~~~v~~~   56 (152)
T d1ukwa1           1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFK   56 (152)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999863

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=98.76  E-value=1.5e-09  Score=76.44  Aligned_cols=50  Identities=26%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303         157 GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP  206 (206)
Q Consensus       157 ~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~  206 (206)
                      +...++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.||++
T Consensus         6 ~~~~L~~~Rl~ia~~a~G~a~~al~~a~~ya~~R~~fG~pl~~~q~vq~~   55 (153)
T d1r2ja1           6 VAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGH   55 (153)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchhhhh
Confidence            45678999999999999999999999999999999999999999999863