Psyllid ID: psy13202

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLHSSSPGSVEPRTHHRNYMAHE
cHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccEEEccccccccccccccccEEEEEEEEcccccccEEEEEEEcccccEEEEccccEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccccc
cHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHccHHHccccccccHHHHccccccEEEEEEEccccEEEEEEEEEccccccEccEcccccEEccccccccccEEEEEEEEccccccccEEEEEEEccccEEEEEccccEEEccHHHHHHEEEEEEEEccccccccccccccccccccccccccccccccc
MRKTLAACQaesgsaiipELIINKLKLIAHHFeyyrpedsHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYlvrdnlyqcekcgykteatkqfsiekPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIhhgsssfsghyncigstssgsyhyfgddrvqasnlqQVTNAYVVIYELLPSslhhlnsslhssspgsveprthhrnymahe
mrktlaacqaesgsaiipELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKteatkqfsiekPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLhssspgsveprthHRNYMAHE
MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYEllpsslhhlnsslhssspgsVEPRTHHRNYMAHE
************GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSL****************************
*RKTL**********IIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVI************************************
**********ESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLN**************THHRNYMAHE
MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLP*******************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLHSSSPGSVEPRTHHRNYMAHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
B3M3M6 1091 Ubiquitin carboxyl-termin N/A N/A 0.896 0.198 0.342 3e-29
B4PIW8 1082 Ubiquitin carboxyl-termin N/A N/A 0.855 0.191 0.344 1e-28
B3NC86 1085 Ubiquitin carboxyl-termin N/A N/A 0.855 0.190 0.341 5e-28
B4QIS3 988 Ubiquitin carboxyl-termin N/A N/A 0.855 0.209 0.337 5e-28
Q9VRP5 1085 Ubiquitin carboxyl-termin no N/A 0.855 0.190 0.333 1e-27
B4KXJ5 1185 Ubiquitin carboxyl-termin N/A N/A 0.855 0.174 0.329 4e-27
B4LG38 1214 Ubiquitin carboxyl-termin N/A N/A 0.855 0.170 0.329 4e-27
B4MLR8 1311 Ubiquitin carboxyl-termin N/A N/A 0.855 0.157 0.335 6e-27
B4IXE0 1240 Ubiquitin carboxyl-termin N/A N/A 0.855 0.166 0.333 9e-27
Q2LZB1 1059 Ubiquitin carboxyl-termin yes N/A 0.855 0.195 0.337 1e-26
>sp|B3M3M6|UBP36_DROAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila ananassae GN=Usp36 PE=3 SV=1 Back     alignment and function desciption
 Score =  128 bits (322), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 95/277 (34%), Positives = 127/277 (45%), Gaps = 60/277 (21%)

Query: 1   MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVIS 60
           M KTL A Q  + SA+ P LI  KLK I  H    R ED+HEFL +L+E + R+YL    
Sbjct: 228 MAKTLQATQT-TQSAVRPFLIYTKLKQICKHMIVGRQEDAHEFLRFLVEAMERAYLMRFR 286

Query: 61  GSNNLE--------------------------------------LSLDIYQLSSLDEALG 82
               L+                                      L LDI +  SL+EA  
Sbjct: 287 NYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKSDSLEEAFE 346

Query: 83  QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPL 142
            +F++E L  D  Y+CE C  K  ATKQF +E+ PI   + LKRF+ +  K++  +    
Sbjct: 347 GYFSREKL-EDFGYKCEGCKKKVSATKQFRLERAPITLCIQLKRFSMMGNKLTKQITFKP 405

Query: 143 YLEFGKFMHCR---------RNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQA 193
            ++  KF               LVS V H G S   GHY  IGST +GSY+ F D  V+ 
Sbjct: 406 RIDLSKFAARSPAASVQPLIYRLVSMVTHLGVSQHCGHYTAIGSTEAGSYYNFDDSYVRP 465

Query: 194 SNLQQV--TNAYVVIYELLPSSLHHLNSSLHSSSPGS 228
             +Q V  TNAY++ YEL P         L +SSP +
Sbjct: 466 IAIQSVCNTNAYIMFYELDP---------LQTSSPAA 493
Required for maintaining multiple types of adult stem cells, including male and female germline, epithelial follicle cell and intestinal stem cells. May function as a transcriptional repressor by continually deubiquiting histone H2B at the promoters of genes critical for cellular differentiation, thereby preventing histone H3 'Lys-4' trimethylation (H3K4).
Drosophila ananassae (taxid: 7217)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|B4PIW8|UBP36_DROYA Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila yakuba GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B3NC86|UBP36_DROER Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila erecta GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4QIS3|UBP36_DROSI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila simulans GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|Q9VRP5|UBP36_DROME Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila melanogaster GN=scny PE=1 SV=2 Back     alignment and function description
>sp|B4KXJ5|UBP36_DROMO Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila mojavensis GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4LG38|UBP36_DROVI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila virilis GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4MLR8|UBP36_DROWI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila willistoni GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4IXE0|UBP36_DROGR Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila grimshawi GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|Q2LZB1|UBP36_DROPS Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
170041357 1034 conserved hypothetical protein [Culex qu 0.859 0.201 0.349 3e-32
157131284 1100 hypothetical protein AaeL_AAEL002698 [Ae 0.859 0.189 0.365 5e-32
321479440 447 hypothetical protein DAPPUDRAFT_39928 [D 0.871 0.472 0.352 7e-31
357619275 880 hypothetical protein KGM_06054 [Danaus p 0.855 0.235 0.356 4e-30
345485737 888 PREDICTED: ubiquitin carboxyl-terminal h 0.896 0.244 0.345 2e-28
332027218 874 Ubiquitin carboxyl-terminal hydrolase 36 0.950 0.263 0.326 3e-28
345485740 895 PREDICTED: ubiquitin carboxyl-terminal h 0.896 0.242 0.345 3e-28
194750190 1091 GF23992 [Drosophila ananassae] gi|251765 0.896 0.198 0.342 2e-27
380012929 884 PREDICTED: ubiquitin carboxyl-terminal h 0.851 0.233 0.345 3e-27
328777507 884 PREDICTED: ubiquitin carboxyl-terminal h 0.851 0.233 0.345 3e-27
>gi|170041357|ref|XP_001848432.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864941|gb|EDS28324.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 129/252 (51%), Gaps = 44/252 (17%)

Query: 1   MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVIS 60
           M KTL A Q+++  AI P L+ +KL+L+  H    R ED+HEFL YL+E + +SYL    
Sbjct: 186 MAKTLLASQSQNQGAIKPYLVYSKLRLVCKHLVLGRQEDAHEFLRYLVEAMEKSYLARFK 245

Query: 61  GSNNLE--------------------------------------LSLDIYQLSSLDEALG 82
            S   +                                      L LDI + +S+++AL 
Sbjct: 246 NSKEFDQLTKETTPLNQILGGYLRSEVKCLSCQHISTTFQHFEDLLLDIRKANSIEDALD 305

Query: 83  QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPL 142
            +FA+E L  +N Y+CE C  +  ATKQFS+E+ P    + LKRF+ +  KI+  V++  
Sbjct: 306 VYFARERL-EENQYKCEACKKRVAATKQFSLERAPFALCIQLKRFSMMGGKINKHVELRN 364

Query: 143 YLEFGKFMHCRR---NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQV 199
            L+   +    +    LVS V H G++   GHY  IG T SGSY+ F D  V+  ++Q V
Sbjct: 365 RLDLSPYCKTGKLTYRLVSMVTHLGNTQHCGHYTAIGGTESGSYYVFDDSSVRPISMQNV 424

Query: 200 --TNAYVVIYEL 209
             TNAY++ YEL
Sbjct: 425 TSTNAYIIFYEL 436

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157131284|ref|XP_001662174.1| hypothetical protein AaeL_AAEL002698 [Aedes aegypti] gi|108881830|gb|EAT46055.1| AAEL002698-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|321479440|gb|EFX90396.1| hypothetical protein DAPPUDRAFT_39928 [Daphnia pulex] Back     alignment and taxonomy information
>gi|357619275|gb|EHJ71919.1| hypothetical protein KGM_06054 [Danaus plexippus] Back     alignment and taxonomy information
>gi|345485737|ref|XP_003425327.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332027218|gb|EGI67307.1| Ubiquitin carboxyl-terminal hydrolase 36 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345485740|ref|XP_003425328.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like isoform 3 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|194750190|ref|XP_001957513.1| GF23992 [Drosophila ananassae] gi|251765094|sp|B3M3M6.1|UBP36_DROAN RecName: Full=Ubiquitin carboxyl-terminal hydrolase 36; AltName: Full=Deubiquitinating enzyme 36; AltName: Full=Protein scrawny; AltName: Full=Ubiquitin thioesterase 36; AltName: Full=Ubiquitin-specific-processing protease 36 gi|190624795|gb|EDV40319.1| GF23992 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|380012929|ref|XP_003690525.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Apis florea] Back     alignment and taxonomy information
>gi|328777507|ref|XP_001120426.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
UNIPROTKB|E7EWZ4475 USP42 "Ubiquitin carboxyl-term 0.590 0.301 0.328 3.9e-24
UNIPROTKB|F1RZ74 1121 USP36 "Ubiquitin carboxyl-term 0.669 0.144 0.335 6.8e-24
MGI|MGI:1919594 1098 Usp36 "ubiquitin specific pept 0.669 0.147 0.323 1.4e-23
UNIPROTKB|Q9P275 1121 USP36 "Ubiquitin carboxyl-term 0.669 0.144 0.323 1.8e-23
UNIPROTKB|E1BGW4 1101 USP36 "Ubiquitin carboxyl-term 0.669 0.147 0.329 2.2e-23
RGD|1309937 1005 Usp36 "ubiquitin specific pept 0.669 0.161 0.317 3.6e-23
UNIPROTKB|E2RKV1 1117 USP36 "Ubiquitin carboxyl-term 0.669 0.145 0.317 3.8e-23
UNIPROTKB|C9JPC9 1044 USP42 "Ubiquitin carboxyl-term 0.590 0.136 0.328 5.2e-23
POMBASE|SPCC1682.12c457 ubp16 "ubiquitin C-terminal hy 0.590 0.312 0.331 5.8e-23
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.669 0.146 0.323 7.3e-23
UNIPROTKB|E7EWZ4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 195 (73.7 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 50/152 (32%), Positives = 81/152 (53%)

Query:    65 LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLL 124
             L+++L+I    S+++AL QF   E L  +N Y+C KC     A+K+F+I +   V  L L
Sbjct:   191 LDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSL 250

Query:   125 KRF-NYLCLKISCAVQVPLYLEFGKFMHCRRN------LVSAVIHHGSSSFSGHYNCIGS 177
             KRF N+   KI+  V+ P YL+   +M           L + ++H G +  +GHY C   
Sbjct:   251 KRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIK 310

Query:   178 TSSGSYHYFGDDRVQASNLQQVTN--AYVVIY 207
              S+G ++   D  V  S+++ V +  AYV+ Y
Sbjct:   311 ASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 342
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
UNIPROTKB|F1RZ74 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919594 Usp36 "ubiquitin specific peptidase 36" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P275 USP36 "Ubiquitin carboxyl-terminal hydrolase 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGW4 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309937 Usp36 "ubiquitin specific peptidase 36" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKV1 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9JPC9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPCC1682.12c ubp16 "ubiquitin C-terminal hydrolase Ubp16" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 4e-43
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-26
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 6e-25
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-18
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 4e-18
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 2e-17
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-17
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 3e-14
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 1e-13
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-11
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 6e-11
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 1e-10
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 8e-07
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-06
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-06
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-06
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 5e-04
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  147 bits (373), Expect = 4e-43
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 47/243 (19%)

Query: 12  SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN------- 64
           SG    P +  + LK I+ HF   R ED+HEFL YL++ + ++ L               
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 65  -------------------------------LELSLDIYQLSSLDEALGQFFAKEYLVRD 93
                                          L+LSLDI    SL++AL QF   E L  +
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGE 180

Query: 94  NLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL-KISCAVQVPLYLEFGKFM-- 150
           N Y+CE+C  K +A+KQ +I + P V  + LKRF+     KI+  +  P  L+   +M  
Sbjct: 181 NKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQ 240

Query: 151 ----HCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTN--AYV 204
                 +  L + ++H G S  SGHY C   +S+G ++   D +V   +++ V +  AY+
Sbjct: 241 PNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYI 300

Query: 205 VIY 207
           + Y
Sbjct: 301 LFY 303

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
KOG1865|consensus 545 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1866|consensus 944 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG0944|consensus763 100.0
KOG1868|consensus653 100.0
KOG1867|consensus492 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.97
KOG4598|consensus 1203 99.97
KOG1873|consensus877 99.97
KOG1864|consensus587 99.97
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.96
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 99.96
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 99.95
KOG1863|consensus 1093 99.94
KOG1870|consensus842 99.93
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.9
KOG1871|consensus420 99.86
KOG1872|consensus473 99.82
KOG2026|consensus442 99.77
KOG1275|consensus 1118 99.13
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 97.93
KOG1870|consensus 842 97.61
KOG3556|consensus724 93.62
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 88.46
COG347868 Predicted nucleic-acid-binding protein containing 82.09
>KOG1865|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.5e-51  Score=363.44  Aligned_cols=210  Identities=34%  Similarity=0.561  Sum_probs=199.3

Q ss_pred             CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------------Ccc---
Q psy13202          1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------------ISG---   61 (242)
Q Consensus         1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------~f~---   61 (242)
                      ||.++.+.+.+++.+|+|..|++.|+.++.+|..|.|+||||||++++|.|+..+...                +||   
T Consensus       157 ~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~L  236 (545)
T KOG1865|consen  157 FQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYL  236 (545)
T ss_pred             HHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccch
Confidence            5788999998888899999999999999999999999999999999999999987532                277   


Q ss_pred             ------------c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEE
Q psy13202         62 ------------S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLK  125 (242)
Q Consensus        62 ------------S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~  125 (242)
                                  |    +.++|+|+|....+|+++|+.|..+|.++|+|+|+|++|+++..|.|+.+|.++|+||+|+||
T Consensus       237 rS~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LK  316 (545)
T KOG1865|consen  237 RSQIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLK  316 (545)
T ss_pred             hhceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeee
Confidence                        3    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe-ecccccceeEEeccccccCccccCCC------ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccc
Q psy13202        126 RFN-YLCLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQ  198 (242)
Q Consensus       126 Rf~-~~~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~  198 (242)
                      ||+ +...||++.|.||+.|||.+|+..+.      .|+|||+|.|.+..+|||+||||..+|+||.+||+.|+.++.+.
T Consensus       317 RF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~  396 (545)
T KOG1865|consen  317 RFSNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES  396 (545)
T ss_pred             hhccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence            999 67799999999999999999999654      99999999999999999999999999999999999999999999


Q ss_pred             cc--ceEEEEEEEe
Q psy13202        199 VT--NAYVVIYELL  210 (242)
Q Consensus       199 v~--~aYiLfY~r~  210 (242)
                      |+  .||||||.|.
T Consensus       397 VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  397 VLSQQAYILFYARK  410 (545)
T ss_pred             eecccceEEEEEee
Confidence            98  9999999997

>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1866|consensus Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>KOG1868|consensus Back     alignment and domain information
>KOG1867|consensus Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598|consensus Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information
>KOG1872|consensus Back     alignment and domain information
>KOG2026|consensus Back     alignment and domain information
>KOG1275|consensus Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>KOG3556|consensus Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 5e-12
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 6e-12
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 6e-12
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-07
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 1e-07
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 2e-07
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 9e-06
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-05
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 1e-05
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-05
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-05
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 96/242 (39%), Gaps = 64/242 (26%)
Query: 28  IAHHFEYYRPEDSHEFLLYLIEGIHRSYL------KVISGSNN----------------- 64
           I  +   Y  +D+HEF  ++I  IH+SY+      K +S +NN                 
Sbjct: 231 INQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLES 290
Query: 65  ------------------LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTE 106
                             L+LSLDI     L E L  F  KE L +D  Y C +C    +
Sbjct: 291 SIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGECNSTQD 349
Query: 107 ATKQFSIEKPPIVFILLLKRFNYLC----LKISCAVQVPLYL---------------EFG 147
           A KQ  I K P V +L LKRF +L      K+   ++ P YL               E G
Sbjct: 350 AIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENG 409
Query: 148 KFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQV--TNAYVV 205
           K       L+  V H G+ +  GHY      S G +  F D  V + + ++V    AY++
Sbjct: 410 KVPDIIYELIGIVSHKGTVN-EGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLL 468
Query: 206 IY 207
            Y
Sbjct: 469 FY 470
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-36
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-36
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 7e-30
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 9e-29
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 3e-28
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 2e-25
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 8e-06
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-24
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-07
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-11
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 1e-06
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 3e-08
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-05
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-05
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 2e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  133 bits (336), Expect = 1e-36
 Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 64/259 (24%)

Query: 12  SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN------- 64
           +        ++     I  +   Y  +D+HEF  ++I  IH+SY+  +  +         
Sbjct: 215 TNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK 274

Query: 65  ----------------------------------LELSLDIYQLSSLDEALGQFFAKEYL 90
                                             L+LSLDI     L E L  F  KE L
Sbjct: 275 QCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL 334

Query: 91  VRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC----LKISCAVQVPLYLEF 146
            +D  Y C +C    +A KQ  I K P V +L LKRF +L      K+   ++ P YL  
Sbjct: 335 -KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM 393

Query: 147 GKFMHCRR---------------NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRV 191
             +   +                 L+  V H G+ +  GHY      S G +  F D  V
Sbjct: 394 KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN-EGHYIAFCKISGGQWFKFNDSMV 452

Query: 192 QASNLQQV--TNAYVVIYE 208
            + + ++V    AY++ Y 
Sbjct: 453 SSISQEEVLKEQAYLLFYT 471
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.74
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-49  Score=351.80  Aligned_cols=214  Identities=24%  Similarity=0.434  Sum_probs=190.9

Q ss_pred             CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------------------
Q psy13202          1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------------------   58 (242)
Q Consensus         1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------------   58 (242)
                      |+.|+..||.+...+++|..|++.+++..+.|.+++||||||||.+|||.|++++...                      
T Consensus        62 l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~  141 (367)
T 2y6e_A           62 YAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKE  141 (367)
T ss_dssp             HHHHHHHHTSSSCSEECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHH
Confidence            4678999999888999999999999999999999999999999999999999986421                      


Q ss_pred             ---------------Ccc---------------c----cceeeeeeCCCC-------------------CCHHHHHHhhc
Q psy13202         59 ---------------ISG---------------S----NNLELSLDIYQL-------------------SSLDEALGQFF   85 (242)
Q Consensus        59 ---------------~f~---------------S----~f~~l~l~i~~~-------------------~sl~~~l~~~~   85 (242)
                                     .|+               |    +|++|+|+||..                   .+|++||+.|+
T Consensus       142 ~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~  221 (367)
T 2y6e_A          142 AWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFT  221 (367)
T ss_dssp             HHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHT
T ss_pred             HHHHHHHhcCCccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhc
Confidence                           143               2    899999999852                   58999999999


Q ss_pred             ccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec---ccccceeEEecc-ccccCccccCCC------c
Q psy13202         86 AKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL---CLKISCAVQVPL-YLEFGKFMHCRR------N  155 (242)
Q Consensus        86 ~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~---~~K~~~~v~fp~-~Ldl~~~~~~~~------~  155 (242)
                      .+|.++++++|.|++|+.++.+.|+..|.++|++|+|||+||.+.   ..|+.+.|.||. .|||.+++..+.      +
T Consensus       222 ~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~  301 (367)
T 2y6e_A          222 TMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYD  301 (367)
T ss_dssp             SCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEE
T ss_pred             ccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEE
Confidence            999999999999999999999999999999999999999999953   489999999996 799999987643      9


Q ss_pred             eeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeCCCcc
Q psy13202        156 LVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSSLH  215 (242)
Q Consensus       156 L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~~~  215 (242)
                      |+|||+|.|. .++|||+||+|.. +++||+|||+.|++++.+++.  .||||||+|++...+
T Consensus       302 L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~  363 (367)
T 2y6e_A          302 LIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY  363 (367)
T ss_dssp             EEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred             EEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence            9999999996 8999999999986 789999999999999999998  999999999886543
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 6e-14
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 7e-13
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-06
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-06
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-06
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 6e-14
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 63  NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFIL 122
             L L L      +L + L  F  +E L  +N + C  C  + ++ K+  I K P V ++
Sbjct: 189 MYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLV 248

Query: 123 LLKRFNY----------LCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHY 172
            LKRF+Y                  + +  Y+   K    + NL S   H+G     GHY
Sbjct: 249 HLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD-GGHY 307

Query: 173 NC-IGSTSSGSYHYFGDDRVQASNLQQV--TNAYVVIYE 208
                + +   +  F D  V   ++  V  + AY++ Y 
Sbjct: 308 TAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYT 346
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-42  Score=297.50  Aligned_cols=210  Identities=21%  Similarity=0.306  Sum_probs=179.8

Q ss_pred             CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------cc-----------
Q psy13202          1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------SG-----------   61 (242)
Q Consensus         1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f~-----------   61 (242)
                      |+++|..|+.+. .++.|..+++.+.  .+.|..+.||||+||+..|++.|++++....        |+           
T Consensus        53 l~~lf~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~  129 (347)
T d1nbfa_          53 LQRVFYELQHSD-KPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKE  129 (347)
T ss_dssp             HHHHHHHHHHCS-SCBCCHHHHHHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEEEESS
T ss_pred             HHHHHHHHhcCC-CCcChHHHHHhhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhccccccccceeceEEEEeEEeCC
Confidence            467888888765 5899999988875  3457889999999999999999999876543        32           


Q ss_pred             ----c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----
Q psy13202         62 ----S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY----  129 (242)
Q Consensus        62 ----S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~----  129 (242)
                          |    +|+.|+|+++...+++++|..++.+|.+++.+.+.|..| ....+.++..|.++|++|+|||+||.+    
T Consensus       130 C~~~s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~  208 (347)
T d1nbfa_         130 VDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQT  208 (347)
T ss_dssp             SCCEEEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTT
T ss_pred             ccceeeeeccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeecccc
Confidence                1    899999999999999999999999999988776666655 567799999999999999999999984    


Q ss_pred             -cccccceeEEeccccccCccccCCC-------ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc
Q psy13202        130 -LCLKISCAVQVPLYLEFGKFMHCRR-------NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT  200 (242)
Q Consensus       130 -~~~K~~~~v~fp~~Ldl~~~~~~~~-------~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~  200 (242)
                       ...|++..|.||+.|||++++....       +|+|||+|.|. .++|||+||+|.. +|+||+|||+.|++++.++|.
T Consensus       209 ~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~  287 (347)
T d1nbfa_         209 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAI  287 (347)
T ss_dssp             TEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHT
T ss_pred             CcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHH
Confidence             3369999999999999999876532       99999999996 7999999999975 678999999999999999985


Q ss_pred             -----------------ceEEEEEEEeCCCcc
Q psy13202        201 -----------------NAYVVIYELLPSSLH  215 (242)
Q Consensus       201 -----------------~aYiLfY~r~~~~~~  215 (242)
                                       +||||||+|.+....
T Consensus       288 ~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~~~  319 (347)
T d1nbfa_         288 EHNYGGHDDDLSVRHCTNAYMLVYIRESKLSE  319 (347)
T ss_dssp             GGGSCCCCSCCSTTTTEEEEEEEEEEGGGHHH
T ss_pred             HhhcCCCccccccCCCCCEEEEEEEecCchHH
Confidence                             599999999875443
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure