Psyllid ID: psy1323

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCNRLQ
cccEEEEEEEEEEEcccccEEEEEEEcccccccccccEEEEEEEccEEEEEEEccccEEEEEEccccccccccEEEEEEEccccEEEEEEcccccEEEEEcccccccccccccccccEEEccccccccccccEEcccccEEEEccEEEcccccccccccccccccccccccccccccccccccccc
cccEccEEEEEEEEcccccEEEEEEEccccccccccEEEEEEEEccEEEEEEEEccccEEEEEccccccccccEEEEEEEccccEEEEEEccccEEEEEccccccccccccccccEEEEEcccccHHHccccEEEEcccEEEEEEEEEEccccccccccccccEEccccccccccccccccccccc
MSFRLCREISFQFRtrlphgllvyhsvkdrpegldpyALYVIVEKGQLKVVHVFGkhstsitvgeglnrdkWHSVMVRINVHGAKLIarvdnrtdetiikgldpntnygvtsdLTSVVLigglspeeklHGVKYIIESFIGCIKDMVLSAGkaasdllpikpliatkhehveegcidkkspcnrlq
MSFRLCREISFqfrtrlphgllVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHstsitvgeglnrdkWHSVMVRINVHgakliarvdnrtdetiikgldpntnygvtSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHehveegcidkkspcnrlq
MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCNRLQ
***RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVE**************
***RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDE**************TSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCID**S*C****
MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCNRLQ
MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCNRLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query186 2.2.26 [Sep-21-2011]
P10040 2146 Protein crumbs OS=Drosoph no N/A 0.897 0.077 0.263 6e-06
Q9CS84 1514 Neurexin-1 OS=Mus musculu yes N/A 0.677 0.083 0.246 2e-05
Q63372 1530 Neurexin-1 OS=Rattus norv yes N/A 0.677 0.082 0.246 2e-05
Q9ULB1 1477 Neurexin-1 OS=Homo sapien yes N/A 0.693 0.087 0.248 5e-05
Q28146 1530 Neurexin-1 OS=Bos taurus no N/A 0.677 0.082 0.240 0.0002
Q60675 3106 Laminin subunit alpha-2 O no N/A 0.725 0.043 0.241 0.0003
P24043 3122 Laminin subunit alpha-2 O no N/A 0.725 0.043 0.248 0.0007
>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3 Back     alignment and function desciption
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 15/182 (8%)

Query: 8    EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
            +I+ QFRT LP+G+L + +  ++ E +  Y L +I   G+L +          + +G  L
Sbjct: 1043 DINLQFRTTLPNGVLAFGTTGEKNEPVS-YILELI--NGRLNLHSSLLNKWEGVFIGSKL 1099

Query: 68   NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
            N   WH V V IN     L A      DE  I  +        +        +GG  P  
Sbjct: 1100 NDSNWHKVFVAINTSHLVLSA-----NDEQAIFPVGSYETANNSQPSFPRTYLGGTIPNL 1154

Query: 128  K--LHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCID----KKSP 181
            K  L  + +   +F+GC++D++++      D      +  TK E+V+ GC      K +P
Sbjct: 1155 KSYLRHLTHQPSAFVGCMQDIMVNGKWIFPDEQDAN-ISYTKLENVQSGCPRTEQCKPNP 1213

Query: 182  CN 183
            C+
Sbjct: 1214 CH 1215
Plays a central role in cell polarity establishment. Participates in the assembly, positioning and maintenance of adherens junctions via its interaction with the SAC complex. Controls the coalescence of the spots of zonula adherens (ZA) into a adhesive ring around the cells. It may act as a signal. Involved in morphogenesis of the photoreceptor rhabdomere, for positioning and growth of rhabdomere and AJ during the crucial period of photoreceptor extension along the proximodistal axis of the retina.
Drosophila melanogaster (taxid: 7227)
>sp|Q9CS84|NRX1A_MOUSE Neurexin-1 OS=Mus musculus GN=Nrxn1 PE=1 SV=3 Back     alignment and function description
>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3 Back     alignment and function description
>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1 Back     alignment and function description
>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1 Back     alignment and function description
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1 Back     alignment and function description
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
328702470 1846 PREDICTED: neurexin-4-like [Acyrthosipho 0.956 0.096 0.820 2e-81
307184317 1984 Contactin associated protein like 5-1 [C 0.956 0.089 0.803 6e-80
350418240 1963 PREDICTED: hypothetical protein LOC10074 0.956 0.090 0.797 7e-80
340717857 1967 PREDICTED: hypothetical protein LOC10064 0.956 0.090 0.797 7e-80
307213135 2046 Contactin-associated protein-like 2 [Har 0.956 0.086 0.803 1e-79
383852936 1951 PREDICTED: uncharacterized protein LOC10 0.956 0.091 0.797 2e-79
332019922 2026 Neurexin-4 [Acromyrmex echinatior] 0.956 0.087 0.797 3e-79
242008177 2023 conserved hypothetical protein [Pediculu 0.956 0.087 0.792 6e-78
380015075 1897 PREDICTED: neurexin-4-like [Apis florea] 0.956 0.093 0.793 9e-78
345497419 2064 PREDICTED: hypothetical protein LOC10011 0.956 0.086 0.792 9e-78
>gi|328702470|ref|XP_001945053.2| PREDICTED: neurexin-4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 164/178 (92%)

Query: 1   MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTS 60
              RLCREISFQFRTRLPHGLLVYHSVKDRP GL PYALYVIVEKGQLKVVHV+GKHSTS
Sbjct: 145 FQLRLCREISFQFRTRLPHGLLVYHSVKDRPTGLPPYALYVIVEKGQLKVVHVYGKHSTS 204

Query: 61  ITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLI 120
           + VGEGLN D WH+V VRI+VHGA+LIA+VDN + E II+GL  ++NYG+++DLTSVVLI
Sbjct: 205 VIVGEGLNHDIWHTVTVRIDVHGARLIAKVDNISAEKIIQGLHKSSNYGISTDLTSVVLI 264

Query: 121 GGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDK 178
           GGLSPEEKLHGVKYIIESF+GCIK+MVLSAGKAASDLLPIKPLIATKH++V+EGCIDK
Sbjct: 265 GGLSPEEKLHGVKYIIESFVGCIKEMVLSAGKAASDLLPIKPLIATKHDNVQEGCIDK 322

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307184317|gb|EFN70775.1| Contactin associated protein like 5-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350418240|ref|XP_003491797.1| PREDICTED: hypothetical protein LOC100749134 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340717857|ref|XP_003397391.1| PREDICTED: hypothetical protein LOC100646420 [Bombus terrestris] Back     alignment and taxonomy information
>gi|307213135|gb|EFN88657.1| Contactin-associated protein-like 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383852936|ref|XP_003701981.1| PREDICTED: uncharacterized protein LOC100875110 [Megachile rotundata] Back     alignment and taxonomy information
>gi|332019922|gb|EGI60382.1| Neurexin-4 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242008177|ref|XP_002424888.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508453|gb|EEB12150.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380015075|ref|XP_003691537.1| PREDICTED: neurexin-4-like [Apis florea] Back     alignment and taxonomy information
>gi|345497419|ref|XP_003427983.1| PREDICTED: hypothetical protein LOC100115644 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
FB|FBgn0262870 1685 axo "axotactin" [Drosophila me 0.930 0.102 0.732 4.2e-63
FB|FBgn0259685 2146 crb "crumbs" [Drosophila melan 0.897 0.077 0.263 6.6e-06
UNIPROTKB|F1LZ10 1284 Lama2 "Protein Lama2" [Rattus 0.720 0.104 0.253 0.00015
UNIPROTKB|F1S2Z4 925 LOC100525900 "Uncharacterized 0.725 0.145 0.255 0.00018
ZFIN|ZDB-GENE-060119-1 3124 lama2 "laminin, alpha 2" [Dani 0.720 0.042 0.246 0.00029
UNIPROTKB|F1NW77 1142 LOC430532 "Uncharacterized pro 0.741 0.120 0.298 0.00031
FB|FBgn0038975 1840 Nrx-1 "Neurexin 1" [Drosophila 0.725 0.073 0.267 0.00053
UNIPROTKB|F1P420 3090 LAMA2 "Uncharacterized protein 0.725 0.043 0.248 0.00093
FB|FBgn0262870 axo "axotactin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 657 (236.3 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 129/176 (73%), Positives = 149/176 (84%)

Query:     4 RLCREISFQFRTRLPHGLLVYHSVKDRPE--GLDPYALYVIVEKGQLKVVHVFGKHSTSI 61
             RLCREISFQFRTRL HGLLVYH+VK+ P+   LDPYALYVIVEKGQLKVVHVFG      
Sbjct:   264 RLCREISFQFRTRLLHGLLVYHNVKN-PDRINLDPYALYVIVEKGQLKVVHVFGSIQRVS 322

Query:    62 TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIG 121
               GE LNRD+WHSVMVRI+VHGA+LIARVDN  +E  +KGL+   NYGV+++L SVVL+G
Sbjct:   323 LFGESLNRDEWHSVMVRIDVHGARLIARVDNSQEEVYLKGLNHEYNYGVSTNLPSVVLVG 382

Query:   122 GLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCID 177
             GLS EEKLHGVKYI ESF+GCI+++VLS+GKAASDLLPI PL+ATKHE+V EGC D
Sbjct:   383 GLSSEEKLHGVKYITESFVGCIRNVVLSSGKAASDLLPIAPLVATKHENVNEGCSD 438
GO:0008038 "neuron recognition" evidence=ISS
GO:0019226 "transmission of nerve impulse" evidence=IMP
GO:0005576 "extracellular region" evidence=ISS
GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA
FB|FBgn0259685 crb "crumbs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1LZ10 Lama2 "Protein Lama2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2Z4 LOC100525900 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060119-1 lama2 "laminin, alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW77 LOC430532 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0038975 Nrx-1 "Neurexin 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1P420 LAMA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 2e-16
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 3e-16
smart00282132 smart00282, LamG, Laminin G domain 2e-15
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 6e-10
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information 
 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 8   EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
            ISF FRT  P+GLL+Y   ++       + L + +E G+L + +  G  S  ++    L
Sbjct: 23  SISFSFRTTSPNGLLLYAGSQNG----GDF-LALELEDGRLVLRYDLGSGSLVLSSKTPL 77

Query: 68  NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
           N  +WHSV V  N     L   VD    E +++   P  +  +  +L   + +GGL  + 
Sbjct: 78  NDGQWHSVSVERNGRSVTLS--VD---GERVVESGSPGGSALL--NLDGPLYLGGLPEDL 130

Query: 128 KLHGVKYIIESFIGCIKDMVL 148
           K  G+      F+GCI+D+ +
Sbjct: 131 KSPGLPV-SPGFVGCIRDLKV 150

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 186
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.96
smart00282135 LamG Laminin G domain. 99.95
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.92
KOG3514|consensus 1591 99.92
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.91
KOG4289|consensus 2531 99.86
KOG3516|consensus 1306 99.84
KOG3516|consensus 1306 99.81
KOG3514|consensus 1591 99.73
KOG1219|consensus 4289 99.73
KOG4289|consensus 2531 99.65
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 99.21
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 98.3
cd00152201 PTX Pentraxins are plasma proteins characterized b 98.1
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 98.06
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 97.95
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 97.89
smart00560133 LamGL LamG-like jellyroll fold domain. 96.47
KOG1834|consensus 952 92.5
KOG3509|consensus 964 92.04
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 90.7
PF14099224 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 88.95
KOG3546|consensus 1167 81.24
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 81.03
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information 
Probab=99.96  E-value=8.9e-28  Score=170.40  Aligned_cols=130  Identities=27%  Similarity=0.400  Sum_probs=98.2

Q ss_pred             EEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323          13 FRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN   92 (186)
Q Consensus        13 frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~   92 (186)
                      |||.+++|+|||.+.....   |  |++|+|.+|+|+++|+.|.+...+.++..++||+||+|++.+...  .+.|+||+
T Consensus         1 frT~~~~Gllly~g~~~~~---d--fial~L~~G~l~~~~~~G~~~~~~~~~~~i~dg~wh~v~~~r~~~--~~~L~Vd~   73 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGSKDGK---D--FIALELRDGRLEFRYNLGSGPASLRSPQKINDGKWHTVSVSRNGR--NGSLSVDG   73 (131)
T ss_dssp             EEESSSSEEEEEEESSTTS---S--EEEEEEETTEEEEEEESSSEEEEEEESSETTSSSEEEEEEEEETT--EEEEEETT
T ss_pred             CccCCCCceEEECCcCCCC---C--EEEEEEECCEEEEEEeCCCccceecCCCccCCCcceEEEEEEcCc--EEEEEECC
Confidence            8999999999999887654   3  999999999999999999998888888889999999999977654  58888998


Q ss_pred             CcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCccc
Q psy1323          93 RTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAAS  155 (186)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~  155 (186)
                      .......   .+.... ..++....+||||+|............++|.|||+++.+|  ++++
T Consensus        74 ~~~~~~~---s~~~~~-~~l~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in--~~~l  130 (131)
T PF00054_consen   74 EEVVTGE---SPSGAT-QSLDVDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSIN--GKPL  130 (131)
T ss_dssp             SEEEEEE---ECSSSS-SSCEECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET--TEEC
T ss_pred             ccceeee---cCCccc-cccccccCEEEccCCchhhcccccccCCCeeEEEEEeEEC--CEEC
Confidence            7752222   121111 1355667899999993333222222688899999999996  4444

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
>smart00282 LamG Laminin G domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG3514|consensus Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3514|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A Back     alignment and domain information
>KOG3546|consensus Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
2wjs_A 608 Crystal Structure Of The Lg1-3 Region Of The Lamini 2e-05
3r05_A 1254 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 2e-05
3qcw_A 1245 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 3e-05
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 2e-04
3asi_A 410 Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns 2e-04
3sh4_A195 Laminin G Like Domain 3 From Human Perlecan Length 6e-04
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin Alpha2 Chain Length = 608 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 9   ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN 68
           + F+FRT     LL+Y + +D  + +      V +  G +KV +  G   TS+   +  N
Sbjct: 229 VMFKFRTFSSSALLMYLATRDLKDFMS-----VELSDGHVKVSYDLGSGMTSVVSNQNHN 283
Query: 69  RDKWHS-VMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
             KW +  + RI       I  +D+  +E +      N N+G+       +  GGL    
Sbjct: 284 DGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGN-NFGLDLKADDKIYFGGLPTLR 342
Query: 128 KLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175
            L   +  ++ + GC+KD+ +S         P   L +  +  V +GC
Sbjct: 343 NLR-PEVNVKKYSGCLKDIEISR-------TPYNILSSPDYVGVTKGC 382
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254 Back     alignment and structure
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6 Length = 410 Back     alignment and structure
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 1e-23
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 5e-13
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 4e-22
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-18
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 4e-15
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-11
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-10
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-07
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 2e-21
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 5e-20
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 5e-20
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 1e-15
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 1e-19
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 2e-15
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 1e-19
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 1e-16
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 1e-14
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 3e-19
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 8e-19
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 3e-18
3v64_A191 Low-density lipoprotein receptor-related protein; 8e-18
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 1e-17
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 1e-11
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 1e-17
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 2e-13
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 1e-12
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 4e-12
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 9e-11
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
 Score = 95.5 bits (237), Expect = 1e-23
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 23/185 (12%)

Query: 4   RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV 63
                + FQF+T    GL++Y+      +G D   + ++  KG L  V   G  +  I  
Sbjct: 25  YTSMHLFFQFKTTSLDGLILYN----SGDGNDFIVVELV--KGYLHYVFDLGNGANLIKG 78

Query: 64  --GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIG 121
              + LN ++WH+VM+  +      + ++D +    I       T      DL S + IG
Sbjct: 79  SSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQI-------TAGARNLDLKSDLYIG 130

Query: 122 GLSPE--EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKK 179
           G++ E  + L  + +  E F GC+  + L+       L  +       +  +E GC    
Sbjct: 131 GVAKETYKSLPKLVHAKEGFQGCLASVDLN-----GRLPDLISDALFCNGQIERGCEGPS 185

Query: 180 SPCNR 184
           + C  
Sbjct: 186 TTCQE 190
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
3v64_A191 Low-density lipoprotein receptor-related protein; 99.97
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.97
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.96
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.96
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.96
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.96
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.96
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.95
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.95
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.95
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.95
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.94
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 99.94
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.94
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 99.94
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.94
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 99.93
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 99.93
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 99.92
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 99.92
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 99.91
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 99.87
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.86
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.64
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.59
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 98.53
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 98.38
3pvn_A206 C-reactive protein; pentraxin family, immune syste 98.35
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 98.31
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 98.24
4dqa_A355 Uncharacterized protein; two domains structure, DU 97.67
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 96.96
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 96.9
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 96.29
1a8d_A 452 Tetanus neurotoxin; clostridial, ganglioside bindi 95.99
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 90.94
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 89.76
3v0a_B 1196 NTNH; botulinum neurotoxin, toxin, neurotoxin asso 87.41
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
Probab=99.97  E-value=3.8e-30  Score=192.56  Aligned_cols=158  Identities=16%  Similarity=0.255  Sum_probs=118.9

Q ss_pred             ceeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEc
Q psy1323           2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINV   81 (186)
Q Consensus         2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~   81 (186)
                      +.+..+.|+|+|||.+++|+|||.+.....  .|  |++|+|.+|+|++.++.|++...+.+...++||+||+|.+.+..
T Consensus        32 ~~~~~~~isl~frT~~~~GlLl~~~~~~~~--~d--~l~l~L~~G~l~~~~~~G~~~~~l~s~~~v~Dg~WH~V~v~r~~  107 (191)
T 3v64_A           32 KALQSNHFELSLRTEATQGLVLWIGKAAER--AD--YMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREH  107 (191)
T ss_dssp             EEESEEEEEEEEECSCSSEEEEEESCCSTT--CC--EEEEEEETTEEEEEEESSSCCEEEEEEEECTTSSCEEEEEEEET
T ss_pred             ccccceEEEEEEEeCCCCeEEEEeCCCCCC--Cc--EEEEEEECCEEEEEEECCCccEEEecCccccCCCCEEEEEEEeC
Confidence            346778999999999999999999763211  13  99999999999999999988777887789999999999997765


Q ss_pred             cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccce-ecCCCcEEEEeeEEECCCCcccccccC
Q psy1323          82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVK-YIIESFIGCIKDMVLSAGKAASDLLPI  160 (186)
Q Consensus        82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~-~~~~~F~GCi~~v~in~~~~~~~l~~~  160 (186)
                        ..++|.||+.......   .|+..  ..++....|||||+|......... ....+|+|||++|+||  ++++||...
T Consensus       108 --~~~~L~VD~~~~~~~~---~~~~~--~~l~~~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~in--~~~l~l~~~  178 (191)
T 3v64_A          108 --REGSLQVGNEAPVTGS---SPLGA--TQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVG--HRQLHLLED  178 (191)
T ss_dssp             --TEEEEEETTSCCEEEE---CCTTC--CCEEECSEEEESCCSSCCSSCCSCGGGTSBCEEEEEEEEET--TEECCTTTT
T ss_pred             --CEEEEEECCeeeEeEE---CCCCc--ceeccCCceEEcccCcccccccccccccCCceEEeeEEEEC--CEEccchhH
Confidence              4588899988643322   23322  235566799999999864322111 1467899999999995  688888876


Q ss_pred             cccccCCccccCccccc
Q psy1323         161 KPLIATKHEHVEEGCID  177 (186)
Q Consensus       161 ~~~~~~~~~~v~~gC~~  177 (186)
                      ..     ..++..||+.
T Consensus       179 ~~-----~~~~~~gC~~  190 (191)
T 3v64_A          179 AV-----TKPELRPCPT  190 (191)
T ss_dssp             CS-----BCCCCCCCSC
T ss_pred             Hh-----cCCCCCCCCC
Confidence            42     2456789963
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 186
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 4e-16
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 1e-15
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 1e-14
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 3e-14
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 5e-12
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 1e-10
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 2e-09
d2erfa1206 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal do 0.004
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.6 bits (172), Expect = 4e-16
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 8   EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
            I  + RT    GLL Y +  +     D   + +    G     +  G   TS  +   +
Sbjct: 41  TIELEVRTEAESGLLFYMARINHA---DFATVQLR--NGFPYFSYDLGSGDTSTMIPTKI 95

Query: 68  NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
           N  +WH + +        L   VD+ + +TI      +       D+  ++ +GGL    
Sbjct: 96  NDGQWHKIKIVRVKQEGIL--YVDDASSQTI------SPKKADILDVVGILYVGGLPINY 147

Query: 128 KLHGVKYIIESFIGCIKDMVLS 149
               +  +  S  GC++++ + 
Sbjct: 148 TTRRIGPVTYSLDGCVRNLHME 169
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.97
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.96
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.96
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.95
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.94
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.94
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.9
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 98.97
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 98.35
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 98.15
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 97.81
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 97.21
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 97.16
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 97.09
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 90.35
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 88.85
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 88.48
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 88.44
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 87.64
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 87.21
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 86.17
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 85.46
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 84.31
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 82.44
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 81.38
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 80.03
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.3e-30  Score=191.58  Aligned_cols=144  Identities=22%  Similarity=0.338  Sum_probs=111.5

Q ss_pred             ceeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEc
Q psy1323           2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINV   81 (186)
Q Consensus         2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~   81 (186)
                      +++..++|+|+|||.+++|+|||.+.....   |  |++|+|.+|+|++.++.|++...+.+...++||+||+|.|.+..
T Consensus        35 ~~~~~~~i~~~frT~~~~GlL~~~~~~~~~---d--fi~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~v~~~~  109 (189)
T d1dyka1          35 KVKNRLTIELEVRTEAESGLLFYMARINHA---D--FATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVK  109 (189)
T ss_dssp             GGSSEEEEEEEEEECCSCEEEEEEECTTSS---S--EEEEEEETTEEEEEEESSSCEEEEECCSCCCSSSCEEEEEEEET
T ss_pred             cccccEEEEEEEEECCCCEEEEEEcCCCCC---c--EEEEEEECCEEEEEEECCCccEEecCCcEeeCCCEEEEEEEEcc
Confidence            356778999999999999999999765433   3  99999999999999999998877888889999999999997765


Q ss_pred             cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccC
Q psy1323          82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPI  160 (186)
Q Consensus        82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~  160 (186)
                        ..+.|.||+......    .+...  ..++....+||||+|.............+|+|||++|+||  ++++||...
T Consensus       110 --~~~~l~VD~~~~~~~----~~~~~--~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in--~~~~~L~~~  178 (189)
T d1dyka1         110 --QEGILYVDDASSQTI----SPKKA--DILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHME--QAPVDLDQP  178 (189)
T ss_dssp             --TEEEEEETTEEEEEE----CSTTC--CCCCCCSEEEESSCCTTCCCCSSCSCCSBCSEEEEEEEES--SSCCCTTSC
T ss_pred             --cEEEEEECCcceeeE----ccCcc--cccccccceEEecccccccccccCcCCCCcEEEEeEEEEC--CEEecCCCc
Confidence              458888998654321    22211  2355667899999997655433222467899999999996  467887654
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure