Psyllid ID: psy13274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 82 | ||||||
| 193592091 | 138 | PREDICTED: partner of bursicon-like [Acy | 0.987 | 0.586 | 0.851 | 4e-36 | |
| 166851832 | 135 | bursicon beta precursor [Tribolium casta | 1.0 | 0.607 | 0.792 | 2e-34 | |
| 195397949 | 141 | GJ18214 [Drosophila virilis] gi|19414124 | 1.0 | 0.581 | 0.780 | 3e-34 | |
| 332375570 | 137 | unknown [Dendroctonus ponderosae] | 1.0 | 0.598 | 0.792 | 5e-34 | |
| 125987235 | 142 | GA13626 [Drosophila pseudoobscura pseudo | 1.0 | 0.577 | 0.768 | 6e-34 | |
| 195437025 | 141 | GK18089 [Drosophila willistoni] gi|19416 | 1.0 | 0.581 | 0.768 | 1e-33 | |
| 126566867 | 147 | bursicon beta [Musca domestica] | 1.0 | 0.557 | 0.756 | 2e-33 | |
| 195116797 | 142 | GI17649 [Drosophila mojavensis] gi|19391 | 1.0 | 0.577 | 0.768 | 3e-33 | |
| 195050299 | 141 | GH13411 [Drosophila grimshawi] gi|193899 | 1.0 | 0.581 | 0.768 | 3e-33 | |
| 194857059 | 141 | GG24257 [Drosophila erecta] gi|195474027 | 1.0 | 0.581 | 0.756 | 4e-33 |
| >gi|193592091|ref|XP_001946298.1| PREDICTED: partner of bursicon-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 80/81 (98%)
Query: 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
IAVNKCEGACNSQVQPSVITP+GFLKECYCCRE++LRER+I LTHCYDPDG+RLTS+K+A
Sbjct: 57 IAVNKCEGACNSQVQPSVITPSGFLKECYCCRETFLRERMIALTHCYDPDGVRLTSDKLA 116
Query: 61 TLDIKLKEPADCKCYKCGDYS 81
TL++KLKEPADCKC+KCGD+S
Sbjct: 117 TLEVKLKEPADCKCFKCGDFS 137
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|166851832|ref|NP_001107780.1| bursicon beta precursor [Tribolium castaneum] gi|74325218|gb|ABA03054.1| bursicon-like protein [Tribolium castaneum] gi|76160857|gb|ABA40403.1| bursicon beta [Tribolium castaneum] gi|270008185|gb|EFA04633.1| partner of burs [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|195397949|ref|XP_002057590.1| GJ18214 [Drosophila virilis] gi|194141244|gb|EDW57663.1| GJ18214 [Drosophila virilis] | Back alignment and taxonomy information |
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| >gi|332375570|gb|AEE62926.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
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| >gi|125987235|ref|XP_001357380.1| GA13626 [Drosophila pseudoobscura pseudoobscura] gi|54645711|gb|EAL34449.1| GA13626 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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| >gi|195437025|ref|XP_002066445.1| GK18089 [Drosophila willistoni] gi|194162530|gb|EDW77431.1| GK18089 [Drosophila willistoni] | Back alignment and taxonomy information |
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| >gi|126566867|gb|ABO20869.1| bursicon beta [Musca domestica] | Back alignment and taxonomy information |
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| >gi|195116797|ref|XP_002002938.1| GI17649 [Drosophila mojavensis] gi|193913513|gb|EDW12380.1| GI17649 [Drosophila mojavensis] | Back alignment and taxonomy information |
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| >gi|195050299|ref|XP_001992864.1| GH13411 [Drosophila grimshawi] gi|193899923|gb|EDV98789.1| GH13411 [Drosophila grimshawi] | Back alignment and taxonomy information |
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| >gi|194857059|ref|XP_001968887.1| GG24257 [Drosophila erecta] gi|195474027|ref|XP_002089293.1| GE25004 [Drosophila yakuba] gi|190660754|gb|EDV57946.1| GG24257 [Drosophila erecta] gi|194175394|gb|EDW89005.1| GE25004 [Drosophila yakuba] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 82 | ||||||
| FB|FBgn0264810 | 141 | pburs "partner of burs" [Droso | 1.0 | 0.581 | 0.756 | 5.1e-35 |
| FB|FBgn0264810 pburs "partner of burs" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 62/82 (75%), Positives = 75/82 (91%)
Query: 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
+ VNKCEG CNSQVQPSVITP GFLKECYCCRES+L+E+VITLTHCYDPDG RLTS +M
Sbjct: 60 VIVNKCEGLCNSQVQPSVITPTGFLKECYCCRESFLKEKVITLTHCYDPDGTRLTSPEMG 119
Query: 61 TLDIKLKEPADCKCYKCGDYSR 82
++DI+L+EP +CKC+KCGD++R
Sbjct: 120 SMDIRLREPTECKCFKCGDFTR 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 82 82 0.00091 102 3 11 22 0.41 29
29 0.43 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 543 (58 KB)
Total size of DFA: 116 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.61u 0.11s 9.72t Elapsed: 00:00:03
Total cpu time: 9.61u 0.11s 9.72t Elapsed: 00:00:03
Start: Thu Aug 15 16:29:33 2013 End: Thu Aug 15 16:29:36 2013
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Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 82 | |||
| smart00041 | 82 | CT C-terminal cystine knot-like domain (CTCK). The | 99.13 | |
| PF03045 | 121 | DAN: DAN domain; InterPro: IPR004133 This domain c | 98.58 | |
| PF00007 | 105 | Cys_knot: Cystine-knot domain; InterPro: IPR006208 | 97.91 |
| >smart00041 CT C-terminal cystine knot-like domain (CTCK) | Back alignment and domain information |
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Probab=99.13 E-value=5.3e-11 Score=75.84 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=52.7
Q ss_pred CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeee
Q psy13274 1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYK 76 (82)
Q Consensus 1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~ 76 (82)
|.++.|+|.|+|..+||.+ +.| ..|.||++...+.+.|+|. |+| ..++..+++.+.+|.|+.
T Consensus 18 v~~~~C~G~C~s~~~~~~~--~~~-~~c~CC~p~~~~~~~v~l~-C~d----------g~~~~~~v~~i~~C~C~~ 79 (82)
T smart00041 18 VKNAFCEGKCGSASSYSIQ--DVQ-HSCSCCQPHKTKTRQVRLR-CPD----------GSTVKKTVMHIEECGCEP 79 (82)
T ss_pred EEcCcEEeECCCeeEcCcc--ccc-cCCCccCCceeEEEEEEEE-CCC----------CCEEEEEEEEEEeccccc
Confidence 5678999999999999882 344 4599999999999999997 983 335888999999999987
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The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers. |
| >PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular | Back alignment and domain information |
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| >PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 82 | |||
| 2k8p_A | 189 | Sclerostin; WNT signalling pathway, bone formation | 92.38 | |
| 1hcn_B | 145 | Human chorionic gonadotropin; hormone; HET: NAG; 2 | 88.22 |
| >2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A | Back alignment and structure |
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Probab=92.38 E-value=0.17 Score=37.41 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=43.6
Q ss_pred eecccccccc-cccceee-----CCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCce-EEEEecCCCCeeee
Q psy13274 3 VNKCEGACNS-QVQPSVI-----TPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMAT-LDIKLKEPADCKCY 75 (82)
Q Consensus 3 V~kCeG~C~S-qVqpSv~-----~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~-~~v~lreP~dC~C~ 75 (82)
-..|.|.|.+ .+.|+++ | ..-..+ .||.-.-.|.|.|+|. |. |..+ ...+++-...|+|.
T Consensus 78 ~lvCsG~C~p~~~lpn~i~~~K~w-r~s~~~-~cCvp~rsRrrRIqm~-C~----------DGtt~rt~ki~vV~sCkCk 144 (189)
T 2k8p_A 78 ELVCSGQCGPARLLPNAIGRGKWW-RPSGPD-FRCIPDRYRAQRVQLL-CP----------GGEAPRARKVRLVASCKCK 144 (189)
T ss_dssp EEEECCCCCCCCCCSSCCCSSCCC-SCCCCC-CCCEECCEEEEEEEEE-CC----------TTSCCEEEEEEEECCEECC
T ss_pred cceEeccccCcccccccccccccc-ccCCCc-ccccCCceeeEEEEEE-cC----------CCCeeeEEEEEEEEeeccc
Confidence 3569999975 5556555 3 111113 3999999999999999 99 3445 67777889999986
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| >1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B* | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00