Psyllid ID: psy13274


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--
IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR
ccEEccccccccccccEEEccccccccccccccccEEEEEEEEEcEEcccccccccccccEEEEEEccccccEEEEcccccc
cccccccccccccccccEEccccccccccccHHHHcccEEEEEEccccccccEcccccccEEEEEEEcccccEEEEcccccc
iavnkcegacnsqvqpsvitpngflkecyccreSYLRERVITLthcydpdgmrltsEKMATLDiklkepadckcykcgdysr
iavnkcegacnsqvqpsvitpngfLKECYCCRESYLRERVITLThcydpdgmrlTSEKMatldiklkepadckcykcgdysr
IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR
*************VQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCG****
*AVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDY**
IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR
*AVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCG****
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IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYKCGDYSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query82 2.2.26 [Sep-21-2011]
Q9VJS7141 Partner of bursicon OS=Dr yes N/A 1.0 0.581 0.756 1e-34
Q566B3153 Partner of bursicon OS=An yes N/A 1.0 0.535 0.719 1e-31
Q566B2137 Partner of bursicon OS=Bo N/A N/A 1.0 0.598 0.634 3e-30
A2VB90145 Partner of bursicon OS=Ap yes N/A 1.0 0.565 0.646 4e-27
>sp|Q9VJS7|PBURS_DROME Partner of bursicon OS=Drosophila melanogaster GN=pburs PE=1 SV=1 Back     alignment and function desciption
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 75/82 (91%)

Query: 1   IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
           + VNKCEG CNSQVQPSVITP GFLKECYCCRES+L+E+VITLTHCYDPDG RLTS +M 
Sbjct: 60  VIVNKCEGLCNSQVQPSVITPTGFLKECYCCRESFLKEKVITLTHCYDPDGTRLTSPEMG 119

Query: 61  TLDIKLKEPADCKCYKCGDYSR 82
           ++DI+L+EP +CKC+KCGD++R
Sbjct: 120 SMDIRLREPTECKCFKCGDFTR 141




Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading. Heterodimer specifically activates the G protein-coupled receptor rk.
Drosophila melanogaster (taxid: 7227)
>sp|Q566B3|PBURS_ANOGA Partner of bursicon OS=Anopheles gambiae GN=pburs PE=2 SV=1 Back     alignment and function description
>sp|Q566B2|PBURS_BOMMO Partner of bursicon OS=Bombyx mori GN=pburs PE=2 SV=1 Back     alignment and function description
>sp|A2VB90|PBURS_APIME Partner of bursicon OS=Apis mellifera GN=pburs PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
193592091138 PREDICTED: partner of bursicon-like [Acy 0.987 0.586 0.851 4e-36
166851832135 bursicon beta precursor [Tribolium casta 1.0 0.607 0.792 2e-34
195397949141 GJ18214 [Drosophila virilis] gi|19414124 1.0 0.581 0.780 3e-34
332375570137 unknown [Dendroctonus ponderosae] 1.0 0.598 0.792 5e-34
125987235142 GA13626 [Drosophila pseudoobscura pseudo 1.0 0.577 0.768 6e-34
195437025141 GK18089 [Drosophila willistoni] gi|19416 1.0 0.581 0.768 1e-33
126566867147 bursicon beta [Musca domestica] 1.0 0.557 0.756 2e-33
195116797142 GI17649 [Drosophila mojavensis] gi|19391 1.0 0.577 0.768 3e-33
195050299141 GH13411 [Drosophila grimshawi] gi|193899 1.0 0.581 0.768 3e-33
194857059141 GG24257 [Drosophila erecta] gi|195474027 1.0 0.581 0.756 4e-33
>gi|193592091|ref|XP_001946298.1| PREDICTED: partner of bursicon-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 80/81 (98%)

Query: 1   IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
           IAVNKCEGACNSQVQPSVITP+GFLKECYCCRE++LRER+I LTHCYDPDG+RLTS+K+A
Sbjct: 57  IAVNKCEGACNSQVQPSVITPSGFLKECYCCRETFLRERMIALTHCYDPDGVRLTSDKLA 116

Query: 61  TLDIKLKEPADCKCYKCGDYS 81
           TL++KLKEPADCKC+KCGD+S
Sbjct: 117 TLEVKLKEPADCKCFKCGDFS 137




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166851832|ref|NP_001107780.1| bursicon beta precursor [Tribolium castaneum] gi|74325218|gb|ABA03054.1| bursicon-like protein [Tribolium castaneum] gi|76160857|gb|ABA40403.1| bursicon beta [Tribolium castaneum] gi|270008185|gb|EFA04633.1| partner of burs [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195397949|ref|XP_002057590.1| GJ18214 [Drosophila virilis] gi|194141244|gb|EDW57663.1| GJ18214 [Drosophila virilis] Back     alignment and taxonomy information
>gi|332375570|gb|AEE62926.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|125987235|ref|XP_001357380.1| GA13626 [Drosophila pseudoobscura pseudoobscura] gi|54645711|gb|EAL34449.1| GA13626 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195437025|ref|XP_002066445.1| GK18089 [Drosophila willistoni] gi|194162530|gb|EDW77431.1| GK18089 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|126566867|gb|ABO20869.1| bursicon beta [Musca domestica] Back     alignment and taxonomy information
>gi|195116797|ref|XP_002002938.1| GI17649 [Drosophila mojavensis] gi|193913513|gb|EDW12380.1| GI17649 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195050299|ref|XP_001992864.1| GH13411 [Drosophila grimshawi] gi|193899923|gb|EDV98789.1| GH13411 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194857059|ref|XP_001968887.1| GG24257 [Drosophila erecta] gi|195474027|ref|XP_002089293.1| GE25004 [Drosophila yakuba] gi|190660754|gb|EDV57946.1| GG24257 [Drosophila erecta] gi|194175394|gb|EDW89005.1| GE25004 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
FB|FBgn0264810141 pburs "partner of burs" [Droso 1.0 0.581 0.756 5.1e-35
FB|FBgn0264810 pburs "partner of burs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 62/82 (75%), Positives = 75/82 (91%)

Query:     1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMA 60
             + VNKCEG CNSQVQPSVITP GFLKECYCCRES+L+E+VITLTHCYDPDG RLTS +M 
Sbjct:    60 VIVNKCEGLCNSQVQPSVITPTGFLKECYCCRESFLKEKVITLTHCYDPDGTRLTSPEMG 119

Query:    61 TLDIKLKEPADCKCYKCGDYSR 82
             ++DI+L+EP +CKC+KCGD++R
Sbjct:   120 SMDIRLREPTECKCFKCGDFTR 141


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.41    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  116 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:03
  Total cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:03
  Start:  Thu Aug 15 16:29:33 2013   End:  Thu Aug 15 16:29:36 2013


GO:0007593 "chitin-based cuticle sclerotization" evidence=IMP
GO:0005576 "extracellular region" evidence=IDA
GO:0001664 "G-protein coupled receptor binding" evidence=IDA
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA
GO:0031395 "bursicon neuropeptide hormone complex" evidence=IDA
GO:0005184 "neuropeptide hormone activity" evidence=IC
GO:0090175 "regulation of establishment of planar polarity" evidence=IMP
GO:0018990 "ecdysis, chitin-based cuticle" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q566B3PBURS_ANOGANo assigned EC number0.71951.00.5359yesN/A
A2VB90PBURS_APIMENo assigned EC number0.64631.00.5655yesN/A
Q9VJS7PBURS_DROMENo assigned EC number0.75601.00.5815yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 82
smart0004182 CT C-terminal cystine knot-like domain (CTCK). The 99.13
PF03045121 DAN: DAN domain; InterPro: IPR004133 This domain c 98.58
PF00007105 Cys_knot: Cystine-knot domain; InterPro: IPR006208 97.91
>smart00041 CT C-terminal cystine knot-like domain (CTCK) Back     alignment and domain information
Probab=99.13  E-value=5.3e-11  Score=75.84  Aligned_cols=62  Identities=26%  Similarity=0.561  Sum_probs=52.7

Q ss_pred             CceecccccccccccceeeCCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCceEEEEecCCCCeeeee
Q psy13274          1 IAVNKCEGACNSQVQPSVITPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMATLDIKLKEPADCKCYK   76 (82)
Q Consensus         1 V~V~kCeG~C~SqVqpSv~~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~~~v~lreP~dC~C~~   76 (82)
                      |.++.|+|.|+|..+||.+  +.| ..|.||++...+.+.|+|. |+|          ..++..+++.+.+|.|+.
T Consensus        18 v~~~~C~G~C~s~~~~~~~--~~~-~~c~CC~p~~~~~~~v~l~-C~d----------g~~~~~~v~~i~~C~C~~   79 (82)
T smart00041       18 VKNAFCEGKCGSASSYSIQ--DVQ-HSCSCCQPHKTKTRQVRLR-CPD----------GSTVKKTVMHIEECGCEP   79 (82)
T ss_pred             EEcCcEEeECCCeeEcCcc--ccc-cCCCccCCceeEEEEEEEE-CCC----------CCEEEEEEEEEEeccccc
Confidence            5678999999999999882  344 4599999999999999997 983          335888999999999987



The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.

>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular Back     alignment and domain information
>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query82
2k8p_A189 Sclerostin; WNT signalling pathway, bone formation 92.38
1hcn_B145 Human chorionic gonadotropin; hormone; HET: NAG; 2 88.22
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A Back     alignment and structure
Probab=92.38  E-value=0.17  Score=37.41  Aligned_cols=60  Identities=23%  Similarity=0.434  Sum_probs=43.6

Q ss_pred             eecccccccc-cccceee-----CCCCcceeeeeccccceeeeeEEeeeccCCCCCcccCCCCce-EEEEecCCCCeeee
Q psy13274          3 VNKCEGACNS-QVQPSVI-----TPNGFLKECYCCRESYLRERVITLTHCYDPDGMRLTSEKMAT-LDIKLKEPADCKCY   75 (82)
Q Consensus         3 V~kCeG~C~S-qVqpSv~-----~~~gf~k~C~CCrEsglrer~V~L~~C~d~~g~~l~g~~~~~-~~v~lreP~dC~C~   75 (82)
                      -..|.|.|.+ .+.|+++     | ..-..+ .||.-.-.|.|.|+|. |.          |..+ ...+++-...|+|.
T Consensus        78 ~lvCsG~C~p~~~lpn~i~~~K~w-r~s~~~-~cCvp~rsRrrRIqm~-C~----------DGtt~rt~ki~vV~sCkCk  144 (189)
T 2k8p_A           78 ELVCSGQCGPARLLPNAIGRGKWW-RPSGPD-FRCIPDRYRAQRVQLL-CP----------GGEAPRARKVRLVASCKCK  144 (189)
T ss_dssp             EEEECCCCCCCCCCSSCCCSSCCC-SCCCCC-CCCEECCEEEEEEEEE-CC----------TTSCCEEEEEEEECCEECC
T ss_pred             cceEeccccCcccccccccccccc-ccCCCc-ccccCCceeeEEEEEE-cC----------CCCeeeEEEEEEEEeeccc
Confidence            3569999975 5556555     3 111113 3999999999999999 99          3445 67777889999986



>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00