Psyllid ID: psy13302


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------
MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
cccEEEEEccccHHHccccccHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEccccccccHHHHcccccc
cccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccc
mesncficgigkdyfdkvphgfdthvQQEHNLANYMFFLMHLinkpdteftgqETYVWNMYQQrcwdffpvgdcfrkqyeedlggggs
MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
****CFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQY*********
MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD***************
MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYE********
*ESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query88 2.2.26 [Sep-21-2011]
Q244985127 Ryanodine receptor 44F OS yes N/A 0.943 0.016 0.903 1e-46
F1LMY45035 Ryanodine receptor 1 OS=R yes N/A 0.954 0.016 0.773 6e-41
Q9TS334872 Ryanodine receptor 3 OS=O yes N/A 0.954 0.017 0.773 7e-41
Q154134870 Ryanodine receptor 3 OS=H yes N/A 0.954 0.017 0.773 1e-40
A2AGL34863 Ryanodine receptor 3 OS=M yes N/A 0.954 0.017 0.773 1e-40
E9PZQ05035 Ryanodine receptor 1 OS=M no N/A 0.943 0.016 0.771 3e-40
P218175038 Ryanodine receptor 1 OS=H no N/A 0.943 0.016 0.771 3e-40
P117165037 Ryanodine receptor 1 OS=O no N/A 0.943 0.016 0.771 4e-40
B0LPN44953 Ryanodine receptor 2 OS=R no N/A 0.943 0.016 0.771 6e-40
E9Q4014966 Ryanodine receptor 2 OS=M no N/A 0.943 0.016 0.771 7e-40
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1 SV=3 Back     alignment and function desciption
 Score =  184 bits (468), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/83 (90%), Positives = 81/83 (97%)

Query: 1    MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNM 60
            MESNCFICG+GKD+FD VPHGFDTHVQ+EHNLANYMFFLMHLINKPDTE+TGQETYVWNM
Sbjct: 5038 MESNCFICGMGKDFFDIVPHGFDTHVQKEHNLANYMFFLMHLINKPDTEYTGQETYVWNM 5097

Query: 61   YQQRCWDFFPVGDCFRKQYEEDL 83
            YQQR WDFFPVGDCFRKQYE++L
Sbjct: 5098 YQQRSWDFFPVGDCFRKQYEDEL 5120




Intracellular calcium channel that is required for proper muscle function during embryonic development and may be essential for excitation-contraction coupling in larval body wall muscles.
Drosophila melanogaster (taxid: 7227)
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1 Back     alignment and function description
>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1 Back     alignment and function description
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3 Back     alignment and function description
>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus GN=Ryr3 PE=1 SV=1 Back     alignment and function description
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1 Back     alignment and function description
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 Back     alignment and function description
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1 Back     alignment and function description
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2 Back     alignment and function description
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query88
389568471 5115 ryanodine receptor [Laodelphax striatell 0.988 0.017 0.965 3e-51
119112859 5109 AGAP010750-PA [Anopheles gambiae str. PE 1.0 0.017 0.954 5e-51
312373790 2050 hypothetical protein AND_16999 [Anophele 1.0 0.042 0.954 7e-51
157138486 5118 ryanodine receptor 3, brain [Aedes aegyp 1.0 0.017 0.943 2e-50
170030186 1339 ryanodine receptor [Culex quinquefasciat 1.0 0.065 0.954 6e-50
242007439 5058 Ryanodine receptor, putative [Pediculus 1.0 0.017 0.931 7e-50
328717378 5101 PREDICTED: ryanodine receptor 44F-like i 0.943 0.016 0.963 3e-48
270003382 4986 hypothetical protein TcasGA2_TC002610 [T 0.943 0.016 0.951 5e-48
321478472 5119 hypothetical protein DAPPUDRAFT_310496 [ 1.0 0.017 0.897 6e-48
389568467 5142 ryanodine receptor [Bemisia tabaci] 0.943 0.016 0.951 6e-48
>gi|389568471|gb|AFK84959.1| ryanodine receptor [Laodelphax striatella] Back     alignment and taxonomy information
 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/87 (96%), Positives = 87/87 (100%)

Query: 1    MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNM 60
            MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNM
Sbjct: 5028 MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNM 5087

Query: 61   YQQRCWDFFPVGDCFRKQYEEDLGGGG 87
            YQQRCWDFFPVGDCFRKQYE++LGGGG
Sbjct: 5088 YQQRCWDFFPVGDCFRKQYEDELGGGG 5114




Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112859|ref|XP_318561.3| AGAP010750-PA [Anopheles gambiae str. PEST] gi|116118655|gb|EAA13701.4| AGAP010750-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312373790|gb|EFR21476.1| hypothetical protein AND_16999 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157138486|ref|XP_001657320.1| ryanodine receptor 3, brain [Aedes aegypti] gi|108880639|gb|EAT44864.1| AAEL003837-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170030186|ref|XP_001842971.1| ryanodine receptor [Culex quinquefasciatus] gi|167865977|gb|EDS29360.1| ryanodine receptor [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|242007439|ref|XP_002424547.1| Ryanodine receptor, putative [Pediculus humanus corporis] gi|212507990|gb|EEB11809.1| Ryanodine receptor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328717378|ref|XP_003246190.1| PREDICTED: ryanodine receptor 44F-like isoform 1 [Acyrthosiphon pisum] gi|328717380|ref|XP_003246191.1| PREDICTED: ryanodine receptor 44F-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|270003382|gb|EEZ99829.1| hypothetical protein TcasGA2_TC002610 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|321478472|gb|EFX89429.1| hypothetical protein DAPPUDRAFT_310496 [Daphnia pulex] Back     alignment and taxonomy information
>gi|389568467|gb|AFK84957.1| ryanodine receptor [Bemisia tabaci] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query88
FB|FBgn00112865127 Rya-r44F "Ryanodine receptor 4 0.988 0.016 0.896 8.6e-42
UNIPROTKB|F8WG77615 F8WG77 "Uncharacterized protei 0.954 0.136 0.773 1.4e-36
ZFIN|ZDB-GENE-041001-1654864 ryr3 "ryanodine receptor 3" [D 0.954 0.017 0.773 3.9e-35
ZFIN|ZDB-GENE-070705-4175076 ryr1b "ryanodine receptor 1b ( 0.954 0.016 0.773 4.1e-35
UNIPROTKB|J9P3554632 RYR3 "Uncharacterized protein" 0.954 0.018 0.773 7.7e-35
UNIPROTKB|F1PJL24813 RYR3 "Uncharacterized protein" 0.954 0.017 0.773 8.1e-35
UNIPROTKB|F1LPJ24839 F1LPJ2 "Uncharacterized protei 0.954 0.017 0.773 8.1e-35
MGI|MGI:996844863 Ryr3 "ryanodine receptor 3" [M 0.954 0.017 0.773 8.2e-35
UNIPROTKB|Q154134870 RYR3 "Ryanodine receptor 3" [H 0.954 0.017 0.773 8.2e-35
UNIPROTKB|Q9TS334872 Q9TS33 "Ryanodine receptor 3" 0.954 0.017 0.773 8.2e-35
FB|FBgn0011286 Rya-r44F "Ryanodine receptor 44F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 463 (168.0 bits), Expect = 8.6e-42, P = 8.6e-42
 Identities = 78/87 (89%), Positives = 84/87 (96%)

Query:     1 MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNM 60
             MESNCFICG+GKD+FD VPHGFDTHVQ+EHNLANYMFFLMHLINKPDTE+TGQETYVWNM
Sbjct:  5038 MESNCFICGMGKDFFDIVPHGFDTHVQKEHNLANYMFFLMHLINKPDTEYTGQETYVWNM 5097

Query:    61 YQQRCWDFFPVGDCFRKQYEEDLGGGG 87
             YQQR WDFFPVGDCFRKQYE++L GGG
Sbjct:  5098 YQQRSWDFFPVGDCFRKQYEDELSGGG 5124




GO:0006816 "calcium ion transport" evidence=TAS
GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=ISS;NAS;TAS
GO:0016021 "integral to membrane" evidence=IEA;NAS
GO:0005789 "endoplasmic reticulum membrane" evidence=NAS
GO:0006936 "muscle contraction" evidence=IMP
GO:0070588 "calcium ion transmembrane transport" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0035206 "regulation of hemocyte proliferation" evidence=IMP
UNIPROTKB|F8WG77 F8WG77 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041001-165 ryr3 "ryanodine receptor 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-417 ryr1b "ryanodine receptor 1b (skeletal)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P355 RYR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJL2 RYR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPJ2 F1LPJ2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99684 Ryr3 "ryanodine receptor 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q15413 RYR3 "Ryanodine receptor 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TS33 Q9TS33 "Ryanodine receptor 3" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F1LMY4RYR1_RATNo assigned EC number0.77380.95450.0166yesN/A
Q15413RYR3_HUMANNo assigned EC number0.77380.95450.0172yesN/A
P16960RYR1_PIGNo assigned EC number0.75900.94310.0164yesN/A
Q9TS33RYR3_RABITNo assigned EC number0.77380.95450.0172yesN/A
Q24498RY44_DROMENo assigned EC number0.90360.94310.0161yesN/A
A2AGL3RYR3_MOUSENo assigned EC number0.77380.95450.0172yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 88
KOG3533|consensus2706 99.96
KOG2243|consensus5019 99.82
>KOG3533|consensus Back     alignment and domain information
Probab=99.96  E-value=3.3e-31  Score=230.29  Aligned_cols=84  Identities=36%  Similarity=0.708  Sum_probs=80.2

Q ss_pred             CCceeeeeCCCccccccCCCChHHHhhhhccchhHHHHHHHhccCCCCCCChhhHHHHHHHhcCCCCeeecchhhhhhch
Q psy13302          1 MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYE   80 (88)
Q Consensus         1 ~kn~CFICgi~r~~fd~~~~~F~~Hi~~eHn~WnYl~fi~yL~~K~~~e~tg~E~yV~~~i~~~d~swfP~~~~~~l~~~   80 (88)
                      +|++|||||++|+.||++...|++||+.|||||||+|||+.++-|++|||||+||||.+++++++++|||..||+||+..
T Consensus      2583 LKttCFICgLeR~kFDNktVsFEeHik~EHNmWhYLyfIVlvkvKd~Te~TGPESYVaqmvk~~nLdWFPRmrAmSLvs~ 2662 (2706)
T KOG3533|consen 2583 LKTTCFICGLERSKFDNKTVTFEEHIKTEHNMWHYLYFIVLVKVKDETEFTGPESYVAQMVKDRNLDWFPRMRAMSLVSS 2662 (2706)
T ss_pred             HhcceeEeecchhhccCceeeHHHhhhhhhhhHHhhheeEEEEecCCccccChHHHHHHHHHhcccchhhhhHhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhc
Q psy13302         81 EDLG   84 (88)
Q Consensus        81 ~~~~   84 (88)
                      +.-+
T Consensus      2663 e~dg 2666 (2706)
T KOG3533|consen 2663 ELDG 2666 (2706)
T ss_pred             cccc
Confidence            6443



>KOG2243|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00