Psyllid ID: psy13333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEcccccccccccEEEEEEEEccccEEEEEccccccEEEEEEcccccccccccEEEEEEEcccccccccEEEEEEEEEcccHHHHHcccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccEcccEEEEEEcccccccccEEEEEEEEEcccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
HLRVVFDFgferqelifpnkhfglgqyhdirIRRKNSGATLlmqvdsyepkefhfnikdsadaqFNNIQYmyigrnesmtegfigcvsrvefddiyplkllfqedgpanvrsig
Flexible Loop (DISEMBL)
hlrvvfdfgferqelifpnkhfglgqyHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLkllfqedgpanvrsig
Low Complexity Region (SEG)
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG
Disordered region (IsUnstruct)
**RVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQ***********
Disordered Region (DISOPRED)
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLF************
Disordered Region (DISEMBL)
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG
Disordered Region (DISPRO)
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQED*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q94887	1284	Neurexin-4 OS=Drosophila	yes	N/A	1.0	0.088	0.736	8e-49
Q9UHC6	1331	Contactin-associated prot	yes	N/A	0.956	0.081	0.275	2e-06
Q9CPW0	1332	Contactin-associated prot	yes	N/A	0.964	0.082	0.281	2e-06
Q5RD64	1331	Contactin-associated prot	yes	N/A	0.956	0.081	0.275	5e-06
Q9BZ76	1288	Contactin-associated prot	no	N/A	0.771	0.068	0.266	0.0001
Q96NU0	1288	Contactin-associated prot	no	N/A	0.771	0.068	0.266	0.0001
P78357	1384	Contactin-associated prot	no	N/A	0.692	0.057	0.319	0.0006

>sp|Q94887|NRX4_DROME Neurexin-4 OS=Drosophila melanogaster GN=Nrx-IV PE=1 SV=2

 Score =  191 bits (486), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 104/114 (91%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLR VFDFGFERQE+IFP KHFGLGQYHD+   RKN G+T++++VD+YEP E++F+IK S
Sbjct: 1062 HLRCVFDFGFERQEIIFPKKHFGLGQYHDMHFMRKNGGSTVVLKVDNYEPVEYNFDIKAS 1121

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIG+NESMT+GF+GCVSRV+FDDIYPLKL+FQ++ P NV+S+G
Sbjct: 1122 ADAQFNNIQYMYIGKNESMTDGFVGCVSRVQFDDIYPLKLMFQQNPPKNVKSLG 1175

Seems to play a role in the formation and function of septate junctions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Required for the blood-brain barrier formation.
Drosophila melanogaster (taxid: 7227)

>sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo sapiens GN=CNTNAP2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 18/127 (14%)

Query: 2    LRVVFDFGFERQ--ELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKD 59
            L++ ++ G  R+   +   +++   GQ H + I R     T+ +++D Y    +H  +  
Sbjct: 1085 LQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEK--TIFLKLDHYPSVSYH--LPS 1140

Query: 60   SADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLK-LLFQEDGP 107
            S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q +  
Sbjct: 1141 SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNAS 1200

Query: 108  ANVRSIG 114
            A+V   G
Sbjct: 1201 AHVHIQG 1207

May play a role in the formation of functional distinct domains critical for saltatory conduction of nerve impulses in myelinated nerve fibers. Seems to demarcate the juxtaparanodal region of the axo-glial junction.

Homo sapiens (taxid: 9606)

>sp|Q9CPW0|CNTP2_MOUSE Contactin-associated protein-like 2 OS=Mus musculus GN=Cntnap2 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 18/128 (14%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
            +L++ ++ G  R+       H  +  GQ H + I R     T+++++D Y    +H  + 
Sbjct: 1085 NLQIRYNLGGTREPFNIDVDHRNMANGQPHSVNITRHER--TIILKLDHYPAVGYH--LP 1140

Query: 59   DSADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLK-LLFQEDG 106
             S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q + 
Sbjct: 1141 SSSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNHIAPLKAALRQTNA 1200

Query: 107  PANVRSIG 114
             A+V   G
Sbjct: 1201 SAHVHIQG 1208

May play a role in the formation of functional distinct domains critical for saltatory conduction of nerve impulses in myelinated nerve fibers. Seems to demarcate the juxtaparanodal region of the axo-glial junction.

Mus musculus (taxid: 10090)

>sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pongo abelii GN=CNTNAP2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 18/127 (14%)

Query: 2    LRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKD 59
            L++ ++ G  R+       H  +  GQ H +   R     T+++++D Y    +H  +  
Sbjct: 1085 LQIRYNLGGTREPYNIDTDHRNMANGQPHSVNNTRHEK--TIILKLDHYPSVSYH--LPS 1140

Query: 60   SADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLK-LLFQEDGP 107
            S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q +  
Sbjct: 1141 SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNAS 1200

Query: 108  ANVRSIG 114
            A+V   G
Sbjct: 1201 AHVHIQG 1207

May play a role in the formation of functional distinct domains critical for saltatory conduction of nerve impulses in myelinated nerve fibers.

Pongo abelii (taxid: 9601)

>sp|Q9BZ76|CNTP3_HUMAN Contactin-associated protein-like 3 OS=Homo sapiens GN=CNTNAP3 PE=2 SV=3

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 17   FPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR- 75
            F  K+   GQ H ++I R+   A ++++V+    K+       S+  +FN ++ + +G+ 
Sbjct: 1093 FDFKNMADGQLHQVKINREE--AVVMVEVNQSTKKQVIL----SSGTEFNAVKSLILGKV 1146

Query: 76   ----------NESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANV 110
                        + T GF GC+S V F    PLK   +  GP+ V
Sbjct: 1147 LEAAGADPDTRRAATSGFTGCLSAVRFGRAAPLKAALRPSGPSRV 1191

Homo sapiens (taxid: 9606)

>sp|Q96NU0|CNT3B_HUMAN Contactin-associated protein-like 3B OS=Homo sapiens GN=CNTNAP3B PE=2 SV=2

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 17   FPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR- 75
            F  K+   GQ H ++I R+   A ++++V+    K+       S+  +FN ++ + +G+ 
Sbjct: 1093 FDFKNMADGQLHQVKINREE--AVVMVEVNQSAKKQVIL----SSGTEFNAVKSLILGKV 1146

Query: 76   ----------NESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANV 110
                        + T GF GC+S V F    PLK   +  GP+ V
Sbjct: 1147 LEAAGADPDTRRAATSGFTGCLSAVRFGRAAPLKAALRPSGPSRV 1191

Homo sapiens (taxid: 9606)

>sp|P78357|CNTP1_HUMAN Contactin-associated protein 1 OS=Homo sapiens GN=CNTNAP1 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 25   GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR--------- 75
            GQ H I I R      L +QVD +   E  F++    D+Q ++ + +Y+GR         
Sbjct: 1141 GQPHSINITRVYR--NLFIQVDYFPLTEQKFSLL--VDSQLDSPKALYLGRVMETGVIDP 1196

Query: 76   --NESMTEGFIGCVSRVEFDDIYPLKLLFQEDGP 107
                  T GF GC+S V F+++ PLK  F+   P
Sbjct: 1197 EIQRYNTPGFSGCLSGVRFNNVAPLKTHFRTPRP 1230

Seems to play a role in the formation of functional distinct domains critical for saltatory conduction of nerve impulses in myelinated nerve fibers. Seems to demarcate the paranodal region of the axo-glial junction. In association with contactin may have a role in the signaling between axons and myelinating glial cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
383856163	1265	PREDICTED: neurexin-4-like [Megachile ro	1.0	0.090	0.885	3e-56
242011635	1290	Contactin-associated protein 1 precursor	0.973	0.086	0.909	5e-56
340717459	1265	PREDICTED: LOW QUALITY PROTEIN: neurexin	1.0	0.090	0.877	2e-55
350407491	1265	PREDICTED: neurexin-4-like [Bombus impat	1.0	0.090	0.877	2e-55
328777552	1242	PREDICTED: neurexin-4, partial [Apis mel	1.0	0.091	0.877	7e-55
307202141	1220	Neurexin-4 [Harpegnathos saltator]	1.0	0.093	0.877	1e-54
322788166	1185	hypothetical protein SINV_05420 [Solenop	1.0	0.096	0.877	2e-54
307182729	1219	Neurexin-4 [Camponotus floridanus]	1.0	0.093	0.850	2e-53
345484467	1269	PREDICTED: neurexin-4-like [Nasonia vitr	1.0	0.089	0.833	1e-52
357628218	1571	hypothetical protein KGM_21089 [Danaus p	1.0	0.072	0.789	1e-52

>gi|383856163|ref|XP_003703579.1| PREDICTED: neurexin-4-like [Megachile rotundata]

 Score =  221 bits (564), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 110/114 (96%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFPNKHFGLGQYHD+R+ RKNSGATL++QVD+YEPKEFHFNIK S
Sbjct: 1043 HLRVVFDFGFERQEVIFPNKHFGLGQYHDVRVGRKNSGATLVLQVDNYEPKEFHFNIKAS 1102

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIGRNESMTEGF GC+SRVEFDDIYPLKLLFQE+GP NVRS+G
Sbjct: 1103 ADAQFNNIQYMYIGRNESMTEGFAGCISRVEFDDIYPLKLLFQENGPENVRSLG 1156

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011635|ref|XP_002426553.1| Contactin-associated protein 1 precursor, putative [Pediculus humanus corporis] gi|212510690|gb|EEB13815.1| Contactin-associated protein 1 precursor, putative [Pediculus humanus corporis]

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 108/111 (97%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQELIFPNKHFGLGQYHD+RIRRKNSGATL+M+VDSYEPKEFHFNIK S
Sbjct: 1069 HLRVVFDFGFERQELIFPNKHFGLGQYHDVRIRRKNSGATLVMEVDSYEPKEFHFNIKAS 1128

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR 111
            ADAQFNNIQYMYIGRNESM+EGF GC+SRVEFDDIYPLKLLFQE+GP NV+
Sbjct: 1129 ADAQFNNIQYMYIGRNESMSEGFTGCISRVEFDDIYPLKLLFQENGPRNVK 1179

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717459|ref|XP_003397199.1| PREDICTED: LOW QUALITY PROTEIN: neurexin-4-like [Bombus terrestris]

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 109/114 (95%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFPNKHFGLGQYHD+R+ RK+SGATL++QVD+YEPKEF FNIK S
Sbjct: 1043 HLRVVFDFGFERQEVIFPNKHFGLGQYHDVRVGRKDSGATLILQVDNYEPKEFPFNIKTS 1102

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIGRNESMTEGF GC+SRVEFDDIYPLKLLFQEDGP NVRS+G
Sbjct: 1103 ADAQFNNIQYMYIGRNESMTEGFAGCISRVEFDDIYPLKLLFQEDGPGNVRSLG 1156

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407491|ref|XP_003488102.1| PREDICTED: neurexin-4-like [Bombus impatiens]

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 109/114 (95%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFPNKHFGLGQYHD+R+ RK+SGATL++QVD+YEPKEF FNIK S
Sbjct: 1043 HLRVVFDFGFERQEVIFPNKHFGLGQYHDVRVGRKDSGATLILQVDNYEPKEFPFNIKTS 1102

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIGRNESMTEGF GC+SRVEFDDIYPLKLLFQEDGP NVRS+G
Sbjct: 1103 ADAQFNNIQYMYIGRNESMTEGFAGCISRVEFDDIYPLKLLFQEDGPGNVRSLG 1156

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777552|ref|XP_624195.3| PREDICTED: neurexin-4, partial [Apis mellifera]

 Score =  217 bits (552), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 107/114 (93%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFPNKHFGLGQYHD+R+ RKNSGA L++QVD+YEPKEF FNIK S
Sbjct: 1020 HLRVVFDFGFERQEVIFPNKHFGLGQYHDVRVGRKNSGAILVLQVDNYEPKEFSFNIKTS 1079

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIGRNESMTEGF GC+SRVEFDDIYPLKLLFQEDGP NVRS G
Sbjct: 1080 ADAQFNNIQYMYIGRNESMTEGFAGCISRVEFDDIYPLKLLFQEDGPGNVRSFG 1133

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202141|gb|EFN81641.1| Neurexin-4 [Harpegnathos saltator]

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 108/114 (94%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFP KHFGLGQYHDIRI RKNSG+ L MQVD+YEP+EFHFNIK S
Sbjct: 998  HLRVVFDFGFERQEVIFPYKHFGLGQYHDIRIGRKNSGSVLTMQVDNYEPREFHFNIKAS 1057

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIG+NESMTEGF GC+SRVEFDDIYPLKLLFQE+GPANVRS+G
Sbjct: 1058 ADAQFNNIQYMYIGKNESMTEGFAGCISRVEFDDIYPLKLLFQENGPANVRSLG 1111

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788166|gb|EFZ13948.1| hypothetical protein SINV_05420 [Solenopsis invicta]

 Score =  215 bits (548), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 110/114 (96%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFP KHFGLGQYHDIRI R+NSGATL+MQVD+YEP+EF+FNIK+S
Sbjct: 999  HLRVVFDFGFERQEVIFPLKHFGLGQYHDIRIGRRNSGATLIMQVDNYEPREFNFNIKNS 1058

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIGRNESMTEGF GC+SRVEFDDIYPLKLLFQE+GP NVRS+G
Sbjct: 1059 ADAQFNNIQYMYIGRNESMTEGFAGCISRVEFDDIYPLKLLFQENGPDNVRSLG 1112

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182729|gb|EFN69853.1| Neurexin-4 [Camponotus floridanus]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 109/114 (95%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFP+KHFGLGQYHD+RI RKNSGATL+MQ+D+YEP+EF FNIK+S
Sbjct: 997  HLRVVFDFGFERQEVIFPDKHFGLGQYHDVRIGRKNSGATLIMQIDNYEPREFDFNIKNS 1056

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMYIG+NESM EGF GC+SRVEFDDIYPLKLLFQE+GP NVRS+G
Sbjct: 1057 ADAQFNNIQYMYIGKNESMPEGFAGCLSRVEFDDIYPLKLLFQENGPDNVRSLG 1110

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484467|ref|XP_003425046.1| PREDICTED: neurexin-4-like [Nasonia vitripennis]

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 107/114 (93%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IFP KHFGLGQYHD+RI RKNSGATL++ +D+YEPKEF F+IK +
Sbjct: 1047 HLRVVFDFGFERQEVIFPGKHFGLGQYHDVRISRKNSGATLVLAIDNYEPKEFEFSIKAN 1106

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQY+YIG+NESMTEGF GCVSRVEFDDIYPLKLLFQE+GP NVRS+G
Sbjct: 1107 ADAQFNNIQYLYIGKNESMTEGFTGCVSRVEFDDIYPLKLLFQENGPGNVRSLG 1160

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628218|gb|EHJ77609.1| hypothetical protein KGM_21089 [Danaus plexippus]

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/114 (78%), Positives = 106/114 (92%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            HLRVVFDFGFERQE+IF  KHFGLGQYHD+R+ RK+SGAT+++QVD+YE +E+ FNI++S
Sbjct: 1352 HLRVVFDFGFERQEIIFEGKHFGLGQYHDVRLSRKDSGATMVLQVDNYETQEYQFNIRES 1411

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
            ADAQFNNIQYMY+GRN+SM EGF+GCVSRVEFDDIYPLKLLFQ+D P NVRSIG
Sbjct: 1412 ADAQFNNIQYMYVGRNDSMAEGFVGCVSRVEFDDIYPLKLLFQQDPPPNVRSIG 1465

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0013997	1284	Nrx-IV "Neurexin IV" [Drosophi	1.0	0.088	0.736	7.1e-45
UNIPROTKB|I3L8W2	225	LOC100625132 "Uncharacterized	0.754	0.382	0.313	9.9e-07
UNIPROTKB|B7Z1Y6	390	CNTNAP2 "cDNA FLJ53861, highly	0.956	0.279	0.275	1.6e-06
ZFIN|ZDB-GENE-091113-51	1300	si:ch211-122m3.1 "si:ch211-122	0.912	0.08	0.32	2.3e-06
RGD|2321568	537	LOC100364190 "mKIAA0868 protei	0.964	0.204	0.281	2.6e-06
UNIPROTKB|F1PCL3	649	F1PCL3 "Uncharacterized protei	0.956	0.167	0.283	3.4e-06
UNIPROTKB|Q9UHC6	1331	CNTNAP2 "Contactin-associated	0.956	0.081	0.275	8.1e-06
MGI|MGI:1914047	1332	Cntnap2 "contactin associated	0.964	0.082	0.281	1e-05
UNIPROTKB|F1NDL6	882	F1NDL6 "Uncharacterized protei	0.833	0.107	0.258	2.2e-05

FB|FBgn0013997 Nrx-IV "Neurexin IV" [Drosophila melanogaster (taxid:7227)]

 Score = 484 (175.4 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 84/114 (73%), Positives = 104/114 (91%)

Query:     1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
             HLR VFDFGFERQE+IFP KHFGLGQYHD+   RKN G+T++++VD+YEP E++F+IK S
Sbjct:  1062 HLRCVFDFGFERQEIIFPKKHFGLGQYHDMHFMRKNGGSTVVLKVDNYEPVEYNFDIKAS 1121

Query:    61 ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
             ADAQFNNIQYMYIG+NESMT+GF+GCVSRV+FDDIYPLKL+FQ++ P NV+S+G
Sbjct:  1122 ADAQFNNIQYMYIGKNESMTDGFVGCVSRVQFDDIYPLKLMFQQNPPKNVKSLG 1175

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0008104 "protein localization" evidence=TAS

GO:0007391 "dorsal closure" evidence=IMP;NAS;TAS

GO:0005918 "septate junction" evidence=NAS;TAS

GO:0016080 "synaptic vesicle targeting" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=NAS

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0008065 "establishment of blood-nerve barrier" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0019991 "septate junction assembly" evidence=IMP;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007155 "cell adhesion" evidence=IEA

GO:0005919 "pleated septate junction" evidence=IDA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0021682 "nerve maturation" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

UNIPROTKB|I3L8W2 LOC100625132 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 32/102 (31%), Positives = 54/102 (52%)

Query:    25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR--------- 75
             GQ H + I R     T+++++D Y    +H  +  S+D  FN+ + +++G+         
Sbjct:     4 GQPHSVNITRHEK--TIILKLDHYPSVSYH--LPSSSDTLFNSPKSLFLGKVIETGKIDQ 59

Query:    76 --NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDGPANVRSIG 114
               ++  T GF GC+SRV+F+ I PLK  L Q +  A+V   G
Sbjct:    60 EIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNASAHVHVQG 101

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B7Z1Y6 CNTNAP2 "cDNA FLJ53861, highly similar to Contactin-associated protein-like 2" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query:     2 LRVVFDFGFERQ--ELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKD 59
             L++ ++ G  R+   +   +++   GQ H + I R     T+ +++D Y    +H  +  
Sbjct:   144 LQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEK--TIFLKLDHYPSVSYH--LPS 199

Query:    60 SADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDGP 107
             S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q +  
Sbjct:   200 SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNAS 259

Query:   108 ANVRSIG 114
             A+V   G
Sbjct:   260 AHVHIQG 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

ZFIN|ZDB-GENE-091113-51 si:ch211-122m3.1 "si:ch211-122m3.1" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 40/125 (32%), Positives = 63/125 (50%)

Query:     1 HLRVVFDFGFERQELIF--PNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
             HL V +     R+  +F    ++   GQ H + ++R     TL +QVD +E +EF+    
Sbjct:  1066 HLDVKYKLAHSREAEVFRASGRNLANGQLHRVSVQRL--AETLSIQVDQHEKEEFNL--- 1120

Query:    59 DSADAQFNNIQYMYIGR----NESMTE-------GFIGCVSRVEFDDIYPLK--LLFQED 105
              ++D +FN I+ + IG+     E   E       GF GC+S V+F+ I PLK  LL+ + 
Sbjct:  1121 -TSDTEFNAIKSIVIGKVLDSGEVDPEIGRLNALGFTGCLSVVQFNSISPLKAALLYPDT 1179

Query:   106 GPANV 110
              P  V
Sbjct:  1180 SPVIV 1184

GO:0007155 "cell adhesion" evidence=IEA

RGD|2321568 LOC100364190 "mKIAA0868 protein-like" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 36/128 (28%), Positives = 65/128 (50%)

Query:     1 HLRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
             +L++ ++ G  R+       H  +  GQ H + I R     T+++++D Y    +H  + 
Sbjct:   290 NLQIRYNLGGTREPFNIDVDHRNMANGQPHSVNITRHEK--TIILKLDHYPAAGYH--LP 345

Query:    59 DSADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDG 106
              S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q + 
Sbjct:   346 SSSDTIFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNHIAPLKAALRQTNA 405

Query:   107 PANVRSIG 114
              A+V   G
Sbjct:   406 SAHVHIQG 413

GO:0005769 "early endosome" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007420 "brain development" evidence=IC

GO:0008076 "voltage-gated potassium channel complex" evidence=IDA

GO:0009986 "cell surface" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030673 "axolemma" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043204 "perikaryon" evidence=IDA

GO:0044224 "juxtaparanode region of axon" evidence=IDA

UNIPROTKB|F1PCL3 F1PCL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 36/127 (28%), Positives = 64/127 (50%)

Query:     2 LRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKD 59
             L++ ++ G  R+       H  +  GQ H + I R     T+++++D Y    +H  +  
Sbjct:   403 LQIRYNLGGTREPYNIDADHRNMANGQPHSVNITRHER--TVILKLDHYPSVSYH--LPS 458

Query:    60 SADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDGP 107
             S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q +  
Sbjct:   459 SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNAS 518

Query:   108 ANVRSIG 114
             A+V   G
Sbjct:   519 AHVHIQG 525

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9UHC6 CNTNAP2 "Contactin-associated protein-like 2" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query:     2 LRVVFDFGFERQ--ELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKD 59
             L++ ++ G  R+   +   +++   GQ H + I R     T+ +++D Y    +H  +  
Sbjct:  1085 LQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEK--TIFLKLDHYPSVSYH--LPS 1140

Query:    60 SADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDGP 107
             S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q +  
Sbjct:  1141 SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPLKAALRQTNAS 1200

Query:   108 ANVRSIG 114
             A+V   G
Sbjct:  1201 AHVHIQG 1207

GO:0007155 "cell adhesion" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0016021 "integral to membrane" evidence=NAS

GO:0019226 "transmission of nerve impulse" evidence=NAS

GO:0008038 "neuron recognition" evidence=NAS

GO:0021987 "cerebral cortex development" evidence=IEP

GO:0043025 "neuronal cell body" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0071625 "vocalization behavior" evidence=IMP

GO:0021756 "striatum development" evidence=IEP

GO:0021794 "thalamus development" evidence=IEP

GO:0007610 "behavior" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0030673 "axolemma" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043204 "perikaryon" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0071109 "superior temporal gyrus development" evidence=IEP

GO:0007420 "brain development" evidence=TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=IDA

GO:0045163 "clustering of voltage-gated potassium channels" evidence=ISS

GO:0021761 "limbic system development" evidence=IEP

GO:0044224 "juxtaparanode region of axon" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

MGI|MGI:1914047 Cntnap2 "contactin associated protein-like 2" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 36/128 (28%), Positives = 65/128 (50%)

Query:     1 HLRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
             +L++ ++ G  R+       H  +  GQ H + I R     T+++++D Y    +H  + 
Sbjct:  1085 NLQIRYNLGGTREPFNIDVDHRNMANGQPHSVNITRHER--TIILKLDHYPAVGYH--LP 1140

Query:    59 DSADAQFNNIQYMYIGR-----------NESMTEGFIGCVSRVEFDDIYPLKL-LFQEDG 106
              S+D  FN+ + +++G+           ++  T GF GC+SRV+F+ I PLK  L Q + 
Sbjct:  1141 SSSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNHIAPLKAALRQTNA 1200

Query:   107 PANVRSIG 114
              A+V   G
Sbjct:  1201 SAHVHIQG 1208

GO:0005515 "protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0007155 "cell adhesion" evidence=TAS

GO:0007610 "behavior" evidence=ISO

GO:0008038 "neuron recognition" evidence=TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=ISO;IDA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0031175 "neuron projection development" evidence=IGI

GO:0034613 "cellular protein localization" evidence=IMP

GO:0044224 "juxtaparanode region of axon" evidence=IDA

GO:0045163 "clustering of voltage-gated potassium channels" evidence=IMP

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IMP

GO:0071625 "vocalization behavior" evidence=ISO

UNIPROTKB|F1NDL6 F1NDL6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 29/112 (25%), Positives = 61/112 (54%)

Query:     1 HLRVVFDFGFERQ--ELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
             +L++ +  G  ++   +   +++   GQ H + I R      +++Q+D Y P  +  ++ 
Sbjct:   638 NLQIRYSLGGTKEPYNIDVDHRNMANGQPHTVNITRNERD--IILQIDHYPPATY--SLP 693

Query:    59 DSADAQFNNIQYMYIGR-------NESM----TEGFIGCVSRVEFDDIYPLK 99
              ++D QFN+ + +++G+       ++ +    T GF GC+SRV+F+ I PLK
Sbjct:   694 AASDIQFNSPKALFLGKVIEIGKIDQDIYKYNTPGFTGCLSRVQFNQIAPLK 745


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.144   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114       114   0.00091  102 3  11 22  0.42    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  116 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.24u 0.09s 11.33t   Elapsed:  00:00:09
  Total cpu time:  11.24u 0.09s 11.33t   Elapsed:  00:00:09
  Start:  Thu Aug 15 12:26:26 2013   End:  Thu Aug 15 12:26:35 2013

GO:0005769 "early endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0021756 "striatum development" evidence=IEA

GO:0021761 "limbic system development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0071109 "superior temporal gyrus development" evidence=IEA

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0071625 "vocalization behavior" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94887	NRX4_DROME	No assigned EC number	0.7368	1.0	0.0887	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	2e-11
smart00282	132	smart00282, LamG, Laminin G domain	7e-09
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	2e-07

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L + +D G     L+   K    GQ+H + + R     TL   VD             S
Sbjct: 30  RLVLRYDLGSGGSVLLLSGKKLNDGQWHRVSVSRDGRSLTL--SVDGGTVVSEALPGSSS 87

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEF 92
                N    +Y+G            +TEGF+GC+  V  
Sbjct: 88  ---ILNLNGPLYLGGLPEDSGLSLLPVTEGFVGCIRNVRV 124

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 49.6 bits (119), Expect = 7e-09
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L + +D G     L         GQ+H + + R     TL   VD              
Sbjct: 35  RLVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRSVTL--SVDGGNRVSGE---SPG 89

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFD 93
                N    +Y+G            +T GF GC+  ++ +
Sbjct: 90  GLTILNLDGPLYLGGLPEDLKLPPLPVTPGFRGCIRNLKVN 130

Length = 132

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L + +D G     L         GQ+H + + R     TL   VD     E        
Sbjct: 57  RLVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNGRSVTL--SVDGERVVES---GSPG 110

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFD 93
             A  N    +Y+G            ++ GF+GC+  ++ +
Sbjct: 111 GSALLNLDGPLYLGGLPEDLKSPGLPVSPGFVGCIRDLKVN 151

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG3516|consensus	1306		99.88
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	99.82
smart00282	135	LamG Laminin G domain.	99.78
KOG3516|consensus	1306		99.77
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	99.77
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	99.68
KOG3514|consensus	1591		99.2
KOG4289|consensus	2531		98.82
KOG1219|consensus	4289		98.8
KOG3514|consensus	1591		98.67
smart00210	184	TSPN Thrombospondin N-terminal -like domains. Hepa	98.58
KOG4289|consensus	2531		97.75
PF13385	157	Laminin_G_3: Concanavalin A-like lectin/glucanases	97.4
cd00152	201	PTX Pentraxins are plasma proteins characterized b	97.01
smart00159	206	PTX Pentraxin / C-reactive protein / pentaxin fami	97.01
smart00560	133	LamGL LamG-like jellyroll fold domain.	95.29
PF00354	195	Pentaxin: Pentaxin family; InterPro: IPR001759 Pen	94.66
KOG3509|consensus	964		85.64

>KOG3516|consensus

Probab=99.88  E-value=8.1e-23  Score=181.76  Aligned_cols=104  Identities=38%  Similarity=0.627  Sum_probs=95.2

Q ss_pred             CeEEEEEcCC-eeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC--
Q psy13333          1 HLRVVFDFGF-ERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE--   77 (114)
Q Consensus         1 ~Lq~ry~Lg~-~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~--   77 (114)
                      +||+||+||+ .+.+++++.+||+|||.|+++|.|..  +++++|||+++++++.+    +.+++|+.+++|++|++.  
T Consensus      1069 sLq~ry~lg~~e~~~~~~~~kn~~~gq~H~i~i~r~~--~~~~i~vD~y~~~~y~~----~~~~~~~~~ksl~lg~v~e~ 1142 (1306)
T KOG3516|consen 1069 SLQTRYMLGFREPFEYQFKDKNIALGQPHDINITRGP--RTVFLEVDGYLKVEYTF----SIDVDFQSPKSLTLGPVTET 1142 (1306)
T ss_pred             ceEEEEecCCcCceEEecccccccCCCceEEEEecCC--ceEEEEecCccceeeec----ccceeecccchhhccceeec
Confidence            6999999999 55999999999999999999999999  99999999999999994    569999999999999962  


Q ss_pred             ---------ccCccceeeeceeEEcChhhhhhhccCCCCCCc
Q psy13333         78 ---------SMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANV  110 (114)
Q Consensus        78 ---------~~~~GF~GCls~v~~N~i~plk~a~~~~~~~~v  110 (114)
                               .+++||.||+|+||||+++|||+|++++..+++
T Consensus      1143 ~~~d~~~~k~~t~gF~GClS~Vqf~~vaPLK~~~~~~~~~~~ 1184 (1306)
T KOG3516|consen 1143 ANIDHEISKYNTPGFGGCLSRVQFNDVAPLKAAFRTEVFIIV 1184 (1306)
T ss_pred             cCCChhHHhhcCCCccceeeEEEccccccchhccccCCceeE
Confidence                     459999999999999999999999999855443

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.82  E-value=1.8e-19  Score=126.19  Aligned_cols=90  Identities=19%  Similarity=0.359  Sum_probs=75.0

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE---   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~---   77 (114)
                      +|+++|++|+++..+.+.. +++||+||+|.++|+.  +.++|+||.....+...  +.+...++++...|||||.+   
T Consensus        30 ~l~~~~~~G~~~~~~~~~~-~i~dg~wh~v~~~r~~--~~~~L~Vd~~~~~~~~s--~~~~~~~l~~~~~lyvGG~p~~~  104 (131)
T PF00054_consen   30 RLEFRYNLGSGPASLRSPQ-KINDGKWHTVSVSRNG--RNGSLSVDGEEVVTGES--PSGATQSLDVDGPLYVGGLPSSS  104 (131)
T ss_dssp             EEEEEEESSSEEEEEEESS-ETTSSSEEEEEEEEET--TEEEEEETTSEEEEEEE--CSSSSSSCEECSEEEESSSSTTT
T ss_pred             EEEEEEeCCCccceecCCC-ccCCCcceEEEEEEcC--cEEEEEECCccceeeec--CCccccccccccCEEEccCCchh
Confidence            4899999999998887655 4999999999999998  99999999988756653  22344469999999999986   


Q ss_pred             ------ccCccceeeeceeEEcCh
Q psy13333         78 ------SMTEGFIGCVSRVEFDDI   95 (114)
Q Consensus        78 ------~~~~GF~GCls~v~~N~i   95 (114)
                            ....||.|||+++.+|+.
T Consensus       105 ~~~~~~~~~~~f~GCi~~~~in~~  128 (131)
T PF00054_consen  105 SRPRPLPISPGFKGCIRNLSINGK  128 (131)
T ss_dssp             GCGSSCSCCSB-EEEEEEEEETTE
T ss_pred             hcccccccCCCeeEEEEEeEECCE
Confidence                  348999999999999985

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>smart00282 LamG Laminin G domain

Probab=99.78  E-value=1.9e-18  Score=119.64  Aligned_cols=89  Identities=21%  Similarity=0.361  Sum_probs=73.6

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---   78 (114)
                      |.++|++|.++..++....+++||+||+|.|+|+.  +.+.|+||.........   +++...++....|||||...   
T Consensus        39 l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~i~~~~--~~~~l~VD~~~~~~~~~---~~~~~~l~~~~~l~iGG~p~~~~  113 (135)
T smart00282       39 LVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNG--RRVTLSVDGENPVSGES---PGGLTILNLDGPLYLGGLPEDLK  113 (135)
T ss_pred             EEEEEECCCCCEEEEECCeEeCCCCEEEEEEEEeC--CEEEEEECCCccccEEC---CCCceEEecCCCcEEccCCchhc
Confidence            67899999888777776578999999999999998  99999999866555442   14456788889999999752   


Q ss_pred             -----cCccceeeeceeEEcCh
Q psy13333         79 -----MTEGFIGCVSRVEFDDI   95 (114)
Q Consensus        79 -----~~~GF~GCls~v~~N~i   95 (114)
                           ...||.|||++|++|+.
T Consensus       114 ~~~~~~~~~F~GCi~~v~in~~  135 (135)
T smart00282      114 LPPLLVTPGFRGCIRNLKVNGK  135 (135)
T ss_pred             ccccccCCCCeeEeeEEEECCC
Confidence                 37899999999999973

>KOG3516|consensus

Probab=99.77  E-value=8.1e-19  Score=156.52  Aligned_cols=92  Identities=18%  Similarity=0.365  Sum_probs=82.8

Q ss_pred             eEEEEEcCCeeEEEEecCc-cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccC
Q psy13333          2 LRVVFDFGFERQELIFPNK-HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMT   80 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~-~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~   80 (114)
                      ++|.|+.|.|+.++++... ++||+|||+|++||+.  |+++||||+.++..++.  |+..-..|.+..+||+|++.+.+
T Consensus       846 vtf~~dvgnGp~~~~V~s~t~~nD~qWH~V~~Ern~--K~a~LqVD~~~~~~r~s--p~~~~~~L~l~s~l~vGgt~~~~  921 (1306)
T KOG3516|consen  846 VTFAFDVGNGPSQLTVRSPTELNDNQWHQVRAERNS--KEASLQVDGLPKSIRTS--PIPGTRLLQLYSSLFVGGTVSRQ  921 (1306)
T ss_pred             eEEEEEcCCCceeEEEcCCcccCCCceEEEEEEecc--ccceEEEcCcccceecC--CCCCEEEEEeccceeccccccCc
Confidence            6899999999977777654 9999999999999999  99999999999999884  33556689999999999999999


Q ss_pred             ccceeeeceeEEcChhh
Q psy13333         81 EGFIGCVSRVEFDDIYP   97 (114)
Q Consensus        81 ~GF~GCls~v~~N~i~p   97 (114)
                      +||.|||+++++||+..
T Consensus       922 ~gF~GCIRsl~LNGv~l  938 (1306)
T KOG3516|consen  922 RGFLGCIRSLQLNGVML  938 (1306)
T ss_pred             Ccceeeeeeeeecceee
Confidence            99999999999999964

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.77  E-value=1e-17  Score=112.91  Aligned_cols=90  Identities=23%  Similarity=0.436  Sum_probs=73.5

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcc-eeeceeeEEEccCCcc
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADA-QFNNIQYMYIGRNESM   79 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~-~ln~~~~L~lGg~~~~   79 (114)
                      .|.++|++|...........+++||+||.|.++|..  +.+.|.||.........   +.... .++....|||||....
T Consensus        30 ~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~--~~~~l~Vd~~~~~~~~~---~~~~~~~~~~~~~l~iGg~~~~  104 (128)
T PF02210_consen   30 RLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDG--NRVTLTVDGQSVSSESL---PSSSSDSLDPDGSLYIGGLPES  104 (128)
T ss_dssp             EEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEET--TEEEEEETTSEEEEEES---SSTTHHCBESEEEEEESSTTTT
T ss_pred             EEEEEEEccccceeeeccCccccccceeEEEEEEee--eeEEEEecCccceEEec---cccceecccCCCCEEEecccCc
Confidence            378999999666555556679999999999999999  99999999998887763   13332 7899999999997422


Q ss_pred             --------CccceeeeceeEEcCh
Q psy13333         80 --------TEGFIGCVSRVEFDDI   95 (114)
Q Consensus        80 --------~~GF~GCls~v~~N~i   95 (114)
                              ..||.|||+.+++||.
T Consensus       105 ~~~~~~~~~~~f~Gci~~l~vng~  128 (128)
T PF02210_consen  105 NQPSGSVDTPGFVGCIRDLRVNGQ  128 (128)
T ss_dssp             CTCTTSSTTSB-EEEEEEEEETTE
T ss_pred             cccccccCCCCcEEEcCeEEECCC
Confidence                    8999999999999984

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=99.68  E-value=3.6e-16  Score=108.63  Aligned_cols=86  Identities=22%  Similarity=0.400  Sum_probs=66.5

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---   78 (114)
                      |.+.|+.|.....++... +++||+||+|.|+|..  ..+.|+||.....+...  + .....++....+||||...   
T Consensus        58 l~~~~~~g~~~~~~~~~~-~v~dg~Wh~v~i~~~~--~~~~l~VD~~~~~~~~~--~-~~~~~~~~~~~~~iGg~~~~~~  131 (151)
T cd00110          58 LVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNG--RSVTLSVDGERVVESGS--P-GGSALLNLDGPLYLGGLPEDLK  131 (151)
T ss_pred             EEEEEcCCcccEEEEccC-ccCCCCEEEEEEEECC--CEEEEEECCccEEeeeC--C-CCceeecCCCCeEEcCCCCchh
Confidence            567777775556665433 7999999999999998  99999999985444431  1 2222578999999999753   


Q ss_pred             -----cCccceeeeceeEEc
Q psy13333         79 -----MTEGFIGCVSRVEFD   93 (114)
Q Consensus        79 -----~~~GF~GCls~v~~N   93 (114)
                           ...||.|||++|++|
T Consensus       132 ~~~~~~~~~F~Gci~~v~in  151 (151)
T cd00110         132 SPGLPVSPGFVGCIRDLKVN  151 (151)
T ss_pred             cccccccCCCceEeeEeEeC
Confidence                 378999999999987

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>KOG3514|consensus

Probab=99.20  E-value=5.1e-11  Score=106.79  Aligned_cols=104  Identities=20%  Similarity=0.427  Sum_probs=80.8

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE---   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~---   77 (114)
                      ||-+-.|||+|-..++-..+.++||+||+|.+.|+.  +.+++.||.- +..+.   .|+...-|++...||||-..   
T Consensus       498 hlyl~ldlGSG~iklras~rkv~DGeWhhv~l~R~g--R~gsvsVd~~-~~df~---tpG~s~iL~ld~~mylG~~~n~l  571 (1591)
T KOG3514|consen  498 HLYLLLDLGSGVIKLRASSRKVNDGEWHHVDLQRDG--RTGSVSVDAI-KTDFS---TPGDSEILDLDDPMYLGEVPNNL  571 (1591)
T ss_pred             eEEEEEecCCceEEeeeecccccCCceEEEEeeccC--ccceEEEeee-ecCcc---CCCcceeEeecCceeeccCCCCc
Confidence            577888999999888877789999999999999998  9999999972 12232   22444568999999999653   


Q ss_pred             ---------ccCccceeeeceeEEcChh-hhhhhccCCCCCCc
Q psy13333         78 ---------SMTEGFIGCVSRVEFDDIY-PLKLLFQEDGPANV  110 (114)
Q Consensus        78 ---------~~~~GF~GCls~v~~N~i~-plk~a~~~~~~~~v  110 (114)
                               ....||+|||+++.++|+. -+.+..+..+++.|
T Consensus       572 ~~P~~vWta~L~~GyvGCirdl~i~G~s~di~q~ae~q~sagv  614 (1591)
T KOG3514|consen  572 VYPSEVWTAALRKGYVGCIRDLFIDGVSTDIRQEAEAQNSAGV  614 (1591)
T ss_pred             cCcHHHHHHHHhccchheehhheecceehhhHHHhhhcccccc
Confidence                     2289999999999999996 45555554444444

>KOG4289|consensus

Probab=98.82  E-value=6.4e-09  Score=95.75  Aligned_cols=102  Identities=16%  Similarity=0.302  Sum_probs=75.9

Q ss_pred             eEEEEEcCCeeEEEEecC-ccCCCCCceEEEEEEecCCCEEEEEECCCCCe-EEEee-cC--------CCCcceeeceee
Q psy13333          2 LRVVFDFGFERQELIFPN-KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPK-EFHFN-IK--------DSADAQFNNIQY   70 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~-~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~-~~~~~-l~--------~~~~~~ln~~~~   70 (114)
                      +|+.|.+|....++...- .-++|||||+|.++..+  |.+.+.||+-... ...+- ++        .++..-|++..+
T Consensus      1374 vqltfS~Ges~t~v~p~Vp~gvsDGqWHtV~l~YyN--K~av~svDdCdt~~al~fg~~gNCAa~g~q~~sKKsLDltgp 1451 (2531)
T KOG4289|consen 1374 VQLTFSAGESTTTVSPDVPGGVSDGQWHTVQLEYYN--KVAVVSVDDCDTNVALRFGTIGNCAAQGTQTGSKKSLDLTGP 1451 (2531)
T ss_pred             EEEEEecccccceecCCCCCCcccCceeEEEEEEec--eEEEEEeccccccceeeecCccchHhhhhccCcceeeeccCc
Confidence            678888886556664432 37999999999999998  9999999984322 21110 00        023345899999


Q ss_pred             EEEccCCc----cCccceeeeceeEEcChhhhhhhccCC
Q psy13333         71 MYIGRNES----MTEGFIGCVSRVEFDDIYPLKLLFQED  105 (114)
Q Consensus        71 L~lGg~~~----~~~GF~GCls~v~~N~i~plk~a~~~~  105 (114)
                      |+|||++.    ..+-|+||||++++.+...-+|++-.+
T Consensus      1452 LlLGGvPe~fpv~~k~FvGCmrdLsvD~~~VDma~fian 1490 (2531)
T KOG4289|consen 1452 LLLGGVPETFPVIEKQFVGCMRDLSVDGRDVDMATFIAN 1490 (2531)
T ss_pred             eeecCCCCcchhhHhHhhhhhhhcccccccccHHHHHhh
Confidence            99999863    378899999999999998888887643

>KOG1219|consensus

Probab=98.80  E-value=1.1e-08  Score=96.97  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE---   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~---   77 (114)
                      ++|+.|+=|+|+-.+.+..+..+|||||.|-++|+.  .-++|.||+..-.....   |+..+.+|+...||+|+.-   
T Consensus      3739 ~~~l~~~cgsG~Givg~q~~~VnDgqWHsialerrr--~~irlsvDd~~~~~atv---Pg~~~tln~d~hiy~Ga~vrlr 3813 (4289)
T KOG1219|consen 3739 SPQLLADCGSGPGIVGSQKRTVNDGQWHSIALERRR--NHIRLSVDDDTYDSATV---PGMKSTLNLDTHIYLGALVRLR 3813 (4289)
T ss_pred             cEEEEEecCCCCCcccccceEeecCceeEEEeeccC--CceEEEEcccCceeeec---ccceeeccccceEEEeeEeeec
Confidence            468888889999666665579999999999999999  99999999977776663   3667779999999999842   


Q ss_pred             -----ccCccceeeeceeEEcChhhhhhhcc
Q psy13333         78 -----SMTEGFIGCVSRVEFDDIYPLKLLFQ  103 (114)
Q Consensus        78 -----~~~~GF~GCls~v~~N~i~plk~a~~  103 (114)
                           ..+.||.|||.++.+||.+..+.+-.
T Consensus      3814 ~~~~tqvs~Gf~GCldsiyLng~el~l~~k~ 3844 (4289)
T KOG1219|consen 3814 HQRSTQVSYGFDGCLDSIYLNGMELPLTRKG 3844 (4289)
T ss_pred             cCCCccccccccceeeeEEEccccccccCCC
Confidence                 23899999999999999987665543

>KOG3514|consensus

Probab=98.67  E-value=5.9e-08  Score=87.65  Aligned_cols=97  Identities=25%  Similarity=0.352  Sum_probs=79.0

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc-ceeeceeeEEEccCCccC
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD-AQFNNIQYMYIGRNESMT   80 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~-~~ln~~~~L~lGg~~~~~   80 (114)
                      |-+-|++|+-...+.-....+|||.+|-||++|.+  .+++||||..+...+.   |.+.+ +-||....+-|||.. +.
T Consensus      1121 igvvfNiGt~Diti~E~~~ivNDgkYHVVRFtR~G--GNATLQVD~wpV~e~y---P~grqlTiFNtqa~I~IGGk~-qG 1194 (1591)
T KOG3514|consen 1121 IGVVFNIGTDDITISEHNAIVNDGKYHVVRFTRSG--GNATLQVDSWPVNERY---PAGRQLTIFNSQARISIGGKF-QG 1194 (1591)
T ss_pred             EEEEEeccCcccccccccccccCCceEEEEEEecC--CceEEEecccchhhcc---CCCceeEEeeccceEEecccc-cC
Confidence            44678888866555434468999999999999998  8999999999987764   33332 358999999999976 45


Q ss_pred             ccceeeeceeEEcChhhhhhhccC
Q psy13333         81 EGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        81 ~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                      +.|-|-||.+-+||...|..|-+.
T Consensus      1195 RpFqGqiSGLyyNgLkVLdlAaE~ 1218 (1591)
T KOG3514|consen 1195 RPFQGQISGLYYNGLKVLDLAAEN 1218 (1591)
T ss_pred             CcccceecceEEcceeeeehhhcc
Confidence            589999999999999999888765

>smart00210 TSPN Thrombospondin N-terminal -like domains

Probab=98.58  E-value=8.2e-07  Score=65.57  Aligned_cols=76  Identities=13%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             EEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccC-CccCccceeeeceeE
Q psy13333         13 QELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRN-ESMTEGFIGCVSRVE   91 (114)
Q Consensus        13 ~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~-~~~~~GF~GCls~v~   91 (114)
                      ..+.++..+|+||+||+|.+.-..  ..++|-||-.......  |+.+....++ ..+.++++. .....-|.|||..++
T Consensus       105 ~~~~f~~~~l~dg~WH~lal~V~~--~~v~LyvDC~~~~~~~--l~~~~~~~~~-~~g~~~~g~~~~~~~~f~G~lq~l~  179 (184)
T smart00210      105 HTVSFRNLPLADGQWHKLALSVSG--SSATLYVDCNEIDSRP--LDRPGQPPID-TDGIEVRGAQAADRKPFQGDLQQLK  179 (184)
T ss_pred             EEEeecCCccccCCceEEEEEEeC--CEEEEEECCcccccee--cCCccccccc-ccceEEEeeccCCCCcceEEeEEEE
Confidence            445555568999999999999998  8999999997766665  3322222344 444555544 333557999999997


Q ss_pred             Ec
Q psy13333         92 FD   93 (114)
Q Consensus        92 ~N   93 (114)
                      +-
T Consensus       180 i~  181 (184)
T smart00210      180 IV  181 (184)
T ss_pred             Ee
Confidence            63

Heparin-binding and cell adhesion domain of thrombospondin

>KOG4289|consensus

Probab=97.75  E-value=4.4e-05  Score=71.39  Aligned_cols=83  Identities=19%  Similarity=0.363  Sum_probs=55.8

Q ss_pred             EEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCe-EEEeecCCCCcceeeceeeEEEccCC--ccCc
Q psy13333          5 VFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPK-EFHFNIKDSADAQFNNIQYMYIGRNE--SMTE   81 (114)
Q Consensus         5 ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~-~~~~~l~~~~~~~ln~~~~L~lGg~~--~~~~   81 (114)
                      .|+.+...  +..+....+||+||++.|+=..   ...+..|...-. +..     .+-..|++ ++||+||..  ....
T Consensus      1600 ~~~v~~s~--v~L~~~~vtdg~Wh~~~i~l~~---d~~~t~d~g~~~aea~-----~gl~gl~l-~sl~vGgap~~g~p~ 1668 (2531)
T KOG4289|consen 1600 KYNVGDSS--VELPAPRVTDGHWHHLVIELEA---DSVATLDYGIYQAEAK-----AGLSGLNL-ESLYVGGAPATGVPR 1668 (2531)
T ss_pred             EEEecCce--EEccCccccCCchhheeeeecc---CeEEEEechhhhhhhh-----cCCCCcee-eEEEEccccCCCccc
Confidence            45555432  3334457899999999999885   566666653221 111     12234554 489999985  4599


Q ss_pred             cceeeeceeEEcChhhh
Q psy13333         82 GFIGCVSRVEFDDIYPL   98 (114)
Q Consensus        82 GF~GCls~v~~N~i~pl   98 (114)
                      ||+|||..|.+.|+..|
T Consensus      1669 gf~GCiqgV~v~g~~~l 1685 (2531)
T KOG4289|consen 1669 GFRGCIQGVRVGGVSIL 1685 (2531)
T ss_pred             cchhhhhceEECCEeec
Confidence            99999999999988644

>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A

Probab=97.40  E-value=0.00029  Score=47.60  Aligned_cols=68  Identities=12%  Similarity=0.254  Sum_probs=45.4

Q ss_pred             CccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCccceeeeceeEE
Q psy13333         19 NKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF   92 (114)
Q Consensus        19 ~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~GF~GCls~v~~   92 (114)
                      ..++.+++||+|.+....  ..++|-||.........    ...........++||+.......|.|-|.++++
T Consensus        79 ~~~~~~~~W~~l~~~~~~--~~~~lyvnG~~~~~~~~----~~~~~~~~~~~~~iG~~~~~~~~~~g~i~~~~i  146 (157)
T PF13385_consen   79 DSNLPDNKWHHLALTYDG--STVTLYVNGELVGSSTI----PSNISLNSNGPLFIGGSGGGSSPFNGYIDDLRI  146 (157)
T ss_dssp             BS---TT-EEEEEEEEET--TEEEEEETTEEETTCTE----ESSSSTTSCCEEEESS-STT--B-EEEEEEEEE
T ss_pred             CcccCCCCEEEEEEEEEC--CeEEEEECCEEEEeEec----cCCcCCCCcceEEEeecCCCCCceEEEEEEEEE
Confidence            357889999999999997  89999999854433321    122224677789999987668889999999976

...

>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity

Probab=97.01  E-value=0.0094  Score=44.39  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC-------ccCccceeeeceeEE-
Q psy13333         21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-------SMTEGFIGCVSRVEF-   92 (114)
Q Consensus        21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-------~~~~GF~GCls~v~~-   92 (114)
                      +..||+||+|-++.+.....+.|-||........+    .....+.....|.||...       .....|.|.|+.|++ 
T Consensus        86 ~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~----~~~~~~~~~g~l~lG~~q~~~gg~~~~~~~f~G~I~~v~iw  161 (201)
T cd00152          86 PESDGAWHHICVTWESTSGIAELWVNGKLSVRKSL----KKGYTVGPGGSIILGQEQDSYGGGFDATQSFVGEISDVNMW  161 (201)
T ss_pred             cCCCCCEEEEEEEEECCCCcEEEEECCEEeccccc----cCCCEECCCCeEEEeecccCCCCCCCCCcceEEEEceeEEE
Confidence            56999999999999863356889999865443321    233456777789999743       126789999999954 


Q ss_pred             cCh
Q psy13333         93 DDI   95 (114)
Q Consensus        93 N~i   95 (114)
                      +..
T Consensus       162 ~~~  164 (201)
T cd00152         162 DSV  164 (201)
T ss_pred             ccc
Confidence            543

CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.

>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family

Probab=97.01  E-value=0.0088  Score=44.82  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE-
Q psy13333         21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF-   92 (114)
Q Consensus        21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~-   92 (114)
                      ++.||+||+|-++.+.....+.|-||........  +  .....+.....|.||..+.       ....|.|-|+.|++ 
T Consensus        86 ~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~--~--~~g~~i~~~G~lvlGq~qd~~gg~f~~~~~f~G~i~~v~iw  161 (206)
T smart00159       86 PESDGKWHHICTTWESSSGIAELWVDGKPGVRKG--L--AKGYTVKPGGSIILGQEQDSYGGGFDATQSFVGEIGDLNMW  161 (206)
T ss_pred             cccCCceEEEEEEEECCCCcEEEEECCEEccccc--c--cCCcEECCCCEEEEEecccCCCCCCCCCcceeEEEeeeEEe
Confidence            6899999999999986446678889987642222  1  3445677888899998531       26689999999954 


Q ss_pred             cCh
Q psy13333         93 DDI   95 (114)
Q Consensus        93 N~i   95 (114)
                      |..
T Consensus       162 ~~~  164 (206)
T smart00159      162 DSV  164 (206)
T ss_pred             ccc
Confidence            543

This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.

>smart00560 LamGL LamG-like jellyroll fold domain

Probab=95.29  E-value=0.088  Score=36.49  Aligned_cols=62  Identities=16%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             CCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEc-cCC---ccCccceeeeceeEEc
Q psy13333         25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIG-RNE---SMTEGFIGCVSRVEFD   93 (114)
Q Consensus        25 gqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lG-g~~---~~~~GF~GCls~v~~N   93 (114)
                      |+||+|-+..+....++.|-||........     ..  .-....+|.+| +..   .....|.|+|.+|++=
T Consensus        61 ~~W~hva~v~d~~~g~~~lYvnG~~~~~~~-----~~--~~~~~~~~~iG~~~~~~~~~~~~f~G~Idevriy  126 (133)
T smart00560       61 GVWVHLAGVYDGGAGKLSLYVNGVEVATSE-----TQ--PSPSSGNLPQGGRILLGGAGGENFSGRLDEVRVY  126 (133)
T ss_pred             CCEEEEEEEEECCCCeEEEEECCEEccccc-----cC--CcccCCceEEeeeccCCCCCCCCceEEeeEEEEe
Confidence            999999999986335899999985443322     11  12445678888 332   2367899999999763

>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits

Probab=94.66  E-value=0.88  Score=34.02  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=44.6

Q ss_pred             cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC-------ccCccceeeeceeEE-
Q psy13333         21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-------SMTEGFIGCVSRVEF-   92 (114)
Q Consensus        21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-------~~~~GF~GCls~v~~-   92 (114)
                      ++.|++||++=++-+.....+.+-||........  +  .....+.....|+||-.+       .....|+|=|+.+.+ 
T Consensus        80 ~~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~--~~g~~i~~gG~~vlGQeQd~~gG~fd~~q~F~G~i~~~~iW  155 (195)
T PF00354_consen   80 PIRDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--L--ATGHSIPGGGTLVLGQEQDSYGGGFDESQAFVGEISDFNIW  155 (195)
T ss_dssp             CS-TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--S--STT--B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEE
T ss_pred             ccCCCCcEEEEEEEecCCcEEEEEECCEeccccc--c--cCCceECCCCEEEECccccccCCCcCCccEeeEEEeceEEE
Confidence            6789999999999887556777889997322222  2  455567777889999643       136789999999965 


Q ss_pred             cCh
Q psy13333         93 DDI   95 (114)
Q Consensus        93 N~i   95 (114)
                      |.+
T Consensus       156 d~v  158 (195)
T PF00354_consen  156 DRV  158 (195)
T ss_dssp             SS-
T ss_pred             eee
Confidence            444

Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....

>KOG3509|consensus

Probab=85.64  E-value=0.41  Score=44.03  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             EEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECC-CCCeEEEeecCCCCcceeeceeeEEEccCC----
Q psy13333          3 RVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDS-YEPKEFHFNIKDSADAQFNNIQYMYIGRNE----   77 (114)
Q Consensus         3 q~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~-~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~----   77 (114)
                      -+||+.+.++-.+.. .....+++||.+.|.|-.     .+-+++ ....+...   .....++..-.++|+|++-    
T Consensus       293 g~~~~~~~~~~~~~~-~~~~~~~E~~~~~i~r~s-----~~~~~g~~~~l~g~~---~~~~~~i~~ee~v~lg~i~ni~~  363 (964)
T KOG3509|consen  293 GVRYDCGLPQREDRL-DVTSYIGEWRFGIIFRGS-----GLSVSGHKGVLQGNS---NILVSRITNEESVFLGGIINIET  363 (964)
T ss_pred             cccccccCcchhhhh-ccccccceeeeeEeeecc-----cccccCcceeecccc---cccccceeecccccCCceeeecc
Confidence            356666665555443 236889999999999922     222333 11122221   1334456666788888852    


Q ss_pred             -----ccCccceeeeceeEEcChh
Q psy13333         78 -----SMTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        78 -----~~~~GF~GCls~v~~N~i~   96 (114)
                           ....||.||+.++++|...
T Consensus       364 l~~~~~~~eGf~gci~~~~~~~k~  387 (964)
T KOG3509|consen  364 LQHNLPLPEGFAGCIRDLVMNLKD  387 (964)
T ss_pred             ccccCCCccCccceehhhhhhccc
Confidence                 2389999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	8e-19
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-18
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-04
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	4e-13
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	2e-12
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	2e-11
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	3e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	9e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	2e-05
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	2e-04
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	2e-06
3v64_A	191	Low-density lipoprotein receptor-related protein;	2e-06
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	3e-06
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	6e-06
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	4e-06
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	8e-06
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	5e-06
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	1e-05
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	3e-05
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	3e-05
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	5e-04

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 78.9 bits (194), Expect = 8e-19
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +      
Sbjct: 287 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERY--PAGR 342

Query: 61  ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
               FN+   + IG  E   + F G +S + ++ +  L +  + D  AN+  +G
Sbjct: 343 QLTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 393

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 1   HLRVVFDFGFERQEL-IFPNKHFGLGQYHDIRIRRKNSGATLLMQVDS---YEPKEFHFN 56
           +L  VFD G     +    NK     Q+H++ I R  S    + ++D+    +      N
Sbjct: 62  YLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAGARN 120

Query: 57  IKDSADAQF---NNIQYMYIGRNESMTEGFIGCVSRVEFDD 94
           +   +D          Y  + +     EGF GC++ V+ + 
Sbjct: 121 LDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNG 161

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 77.6 bits (190), Expect = 3e-18
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 1    HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
             + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E        
Sbjct: 1119 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIE--RYPAGR 1174

Query: 61   ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR 111
                FN+   + IG  E   + F G +S + ++ +  L +  + D    + 
Sbjct: 1175 QLTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 1224

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 22/128 (17%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
           HL ++ D G    ++    K    G+++ +  +R     T+   V++             
Sbjct: 491 HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTI--SVNTLRTPYTA----PG 544

Query: 61  ADAQFNNIQYMYIG---------------RNESMTEGFIGCVSRVEFDD-IYPLKLLFQE 104
                +    +Y+G                   +  G++GC+  +  D     ++ + + 
Sbjct: 545 ESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEV 604

Query: 105 DGPANVRS 112
              A V+ 
Sbjct: 605 QSTAGVKP 612

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 20/119 (16%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L++ F         +  +     G +H++RIRR+    TL   +D  E K        S
Sbjct: 58  RLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTL--FIDQVEAKWVE---VKS 112

Query: 61  ADAQFNNIQYMYIG---------------RNESMTEGFIGCVSRVEFDDIYPLKLLFQE 104
                     +++G                +    E F G +  V       L +   E
Sbjct: 113 KRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGE 171

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 1   HLRVVFDFGFERQEL-IFPNKHFGLGQYHDIRIRRKNSGATLLMQVD---SYEPKEFHFN 56
           +L  VFD G     +    NK     Q+H++ I R  S    + ++D   + +      N
Sbjct: 894 YLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAGARN 952

Query: 57  IKDSADAQFNNI---QYMYIGRNESMTEGFIGCVSRVEFDDIYP 97
           +   +D     +    Y  + +     EGF GC++ V+ +   P
Sbjct: 953 LDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLP 996

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 1   HLRVVFDFGFERQELI--FPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
            + +V + G    E +    N  F    +HD+++ R     T+   VD       +    
Sbjct: 289 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTI--SVDGILTTTGYTQ-- 344

Query: 59  DSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYP 97
                   +  + Y+G            ++  F+GC+  V + +   
Sbjct: 345 -EDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDV 390

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 62.1 bits (150), Expect = 4e-13
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 33/142 (23%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFH------ 54
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +      
Sbjct: 73  KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGNND 130

Query: 55  ----------------------FNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF 92
                                    K      FN+   + IG  E   + F G +S + +
Sbjct: 131 NERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKE-QGQPFQGQLSGLYY 189

Query: 93  DDIYPLKLLFQEDGPANVRSIG 114
           + +  L +  + D   N+  +G
Sbjct: 190 NGLKVLNMAAENDA--NIAIVG 209

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +   +  
Sbjct: 101 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQL 158

Query: 61  ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR 111
               FN+   + IG  +   + F G +S + ++ +  L +  + D    + 
Sbjct: 159 --TIFNSQATIIIG-GKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 206

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +   +  
Sbjct: 67  KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQL 124

Query: 61  ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
               FN+   + IG  +   + F G +S + ++ +  L +  + D   N+  +G
Sbjct: 125 --TIFNSQATIIIG-GKEQGQPFQGQLSGLYYNGLKVLNMAAENDA--NIAIVG 173

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            +++  + G +  E +F   +    ++H +R+ R+     L   VD  +        + +
Sbjct: 64  RVKLTVNLG-KGPETLFAGYNLNDNEWHTVRVVRRGKSLKL--TVDDQQAMTG----QMA 116

Query: 61  ADAQFNNIQYMYIG------RNESMTEGFIGCVSRVEFDDIYPLKLL 101
            D        +  G         S+   FIG +  + F+ +  + L 
Sbjct: 117 GDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLC 163

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 45.1 bits (106), Expect = 9e-07
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 1   HLRVVFDFG---FERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
            L V    G     +  +      F  G+ H + + R     T+  Q+D          +
Sbjct: 443 RLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTV--QIDEDRRH-----M 495

Query: 58  KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
           ++  + Q   ++ +++G                F GCV  +  + 
Sbjct: 496 QNLTEEQPIEVKKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINS 540

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 14/108 (12%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            +  ++D G     + +P+       ++ I   R     ++ ++           +   S
Sbjct: 68  KVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHS 127

Query: 61  ADAQFNNIQY------MYIG--------RNESMTEGFIGCVSRVEFDD 94
                  I        +++G         +      F GC+    FD+
Sbjct: 128 VSPPGYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDN 175

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
           H++V +D G     ++  N++   G++    + R    A +   +   +  +       S
Sbjct: 262 HVKVSYDLGSGMTSVV-SNQNHNDGKWKAFTLSRIQKQANI--SIVDIDSNQEENVATSS 318

Query: 61  A----DAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
           +             +Y G        R E   + + GC+  +E   
Sbjct: 319 SGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEISR 364

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            +++++D G  +  ++          +  I+  R     +L  QV +  P          
Sbjct: 86  FVQMMYDLG-SKPVVLRSTVPINTNHWTHIKAYRVQREGSL--QVGNEAPITGSSP---L 139

Query: 61  ADAQFNNIQYMYIG----------RNESMTEGFIGCVSRVEFDD 94
              Q +    +++G            ++ + GFIGC+  V  D 
Sbjct: 140 GATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDR 183

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
           HL++ +D G  +  ++         ++  IR  R++   +L  QV +  P          
Sbjct: 73  HLQLSYDLG-SQPVVLRSTVKVNTNRWLRIRAHREHREGSL--QVGNEAPVTGSSP---L 126

Query: 61  ADAQFNNIQYMYIG----------RNESMTEGFIGCVSRVEFDD 94
              Q +    +++G            ++   GF+GC+  V    
Sbjct: 127 GATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGH 170

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L  +FD G  R ++  P      G++H ++       A +   VD  E           
Sbjct: 80  RLHFMFDLGKGRTKVSHPAL-LSDGKWHTVKTEYIKRKAFM--TVDGQESPSVTVV---G 133

Query: 61  ADAQFNNIQYMYIG---------RNESMTEGFIGCVSRVEFDD 94
                +  + +Y+G            ++T     C+  +  + 
Sbjct: 134 KATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNG 176

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 16/112 (14%)

Query: 1   HLRVVFDFG---FERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
            +    + G             +    G++H ++  +      L   VD           
Sbjct: 256 KVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVL--TVDGNSV---RAES 310

Query: 58  KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLL 101
             +     +    +Y+G         + S    F GCV  +       ++ L
Sbjct: 311 PHTHSTSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQVQSL 362

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 1   HLRVVFDFGFERQELIF---PNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
            L    D G  R   I+      H   GQ+H +  ++  +   L   VD  +        
Sbjct: 268 KLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLEL--VVDGNQV---DAQS 322

Query: 58  KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPAN 109
            +SA    +    +++G           +    F GC+  ++        L         
Sbjct: 323 PNSASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALE 382

Query: 110 VRSI 113
           +R +
Sbjct: 383 LRGV 386

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
                +D G      + P K    GQ+H I+I R       ++ VD              
Sbjct: 94  FPYFSYDLGSGDTSTMIPTK-INDGQWHKIKIVR--VKQEGILYVDDASS---QTISPKK 147

Query: 61  ADAQFNNIQYMYIG---------RNESMTEGFIGCVSRVEFDD 94
           AD   + +  +Y+G         R   +T    GCV  +  + 
Sbjct: 148 AD-ILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQ 189

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 11/108 (10%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L +   +      +         G +  I +        L+++V+     +        
Sbjct: 98  RLELQLRYN-GVGRVTSSGPVINHGMWQTISVEEL--ARNLVIKVNRDAVMKIAVAGDLF 154

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKL 100
              +      + +G          + +     GC+    + +     +
Sbjct: 155 QPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTI 202

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
           HL   +D G +   +I   +   LG +  + + R      L  QV            +  
Sbjct: 73  HLEFRYDLG-KGAAIIRSKEPIALGTWVRVFLERNGRKGAL--QVGDGPRVLG----ESP 125

Query: 61  ADAQFNNIQY-MYIG---------RNESMTEGFIGCVSRVEFDD 94
                 N++  +Y+G         R  ++  GF G +  V    
Sbjct: 126 VPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRG 169

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
           HL   +  G   +  +        G++H +   R+    ++  QVD  E           
Sbjct: 72  HLVFRYQLG-SGEARLVSEDPINDGEWHRVTALREGRRGSI--QVDGEELVSG---RSPG 125

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYP 97
            +   N    +YIG             + G  GCV  +      P
Sbjct: 126 PNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARP 170

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
            + +V + G    E +    +       +HD+++ R     T+   VD       +    
Sbjct: 63  AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTI--SVDGILTTTGY---T 117

Query: 59  DSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDI 95
                   +  + Y+G            ++  F+GC+  V + + 
Sbjct: 118 QEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNN 162

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
              +     + +  +    +    G++H + ++ +     L  +VD  E       +   
Sbjct: 75  RPEIQLHNHWAQLTVGAGPR-LDDGRWHQVEVKMEGDSVLL--EVDGEEVLRLR-QVSGP 130

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
             ++ + I  + +G            +     GC+ R  + D
Sbjct: 131 LTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.86
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.85
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.85
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.84
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.84
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.82
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.82
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.81
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.81
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.8
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.78
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.76
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.72
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.7
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.69
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.68
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.68
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.66
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.64
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.61
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.55
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.53
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.25
2erf_A	209	Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug	98.23
1za4_A	251	Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel	98.15
2uur_A	245	Collagen alpha-1(IX) chain; glycoprotein, hydroxyl	97.68
3pvn_A	206	C-reactive protein; pentraxin family, immune syste	97.48
3kqr_A	204	Serum amyloid P-component; glycoprotein, disulfide	97.37
3flp_A	217	SAP-like pentraxin; physiological doubly-stacked h	97.24
4dqa_A	355	Uncharacterized protein; two domains structure, DU	96.98
4b1m_A	185	Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil	86.73
2v73_A	191	CBM40, putative EXO-alpha-sialidase; carbohydrate-	82.63
1a8d_A	452	Tetanus neurotoxin; clostridial, ganglioside bindi	82.56

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.86  E-value=3e-21  Score=139.82  Aligned_cols=99  Identities=24%  Similarity=0.368  Sum_probs=83.7

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc-ceeeceeeEEEccCCcc
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD-AQFNNIQYMYIGRNESM   79 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~-~~ln~~~~L~lGg~~~~   79 (114)
                      .|+++|++|+++..+.....+++||+||+|+++|+.  +.++|+||+.......   +++.. ..|+....|||||.+. 
T Consensus        67 ~l~~~~~~G~~~~~~~~~~~~vnDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~~~~~~~l~~~~~lylGG~p~-  140 (178)
T 3bod_A           67 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERY---PAGRQLTIFNSQATIIIGGKEQ-  140 (178)
T ss_dssp             EEEEEEESSSCCEEEECCSSCCCSSSCEEEEEEEET--TEEEEEETTSCCEEEC---CCSCCCCCBCCEEEEEESCCTT-
T ss_pred             EEEEEEECCCCceEEecCCcCccCCCeEEEEEEEeC--CEEEEEEeCCceeeee---cCCCcceEEeCCCcEEEecccC-
Confidence            378999999998777754568999999999999998  9999999998766553   22333 5699999999999876 


Q ss_pred             CccceeeeceeEEcChhhhhhhccCC
Q psy13333         80 TEGFIGCVSRVEFDDIYPLKLLFQED  105 (114)
Q Consensus        80 ~~GF~GCls~v~~N~i~plk~a~~~~  105 (114)
                      ..+|.|||++|.+|+..++..|....
T Consensus       141 ~~~F~GCi~~v~in~~~vl~l~~~~~  166 (178)
T 3bod_A          141 GQPFQGQLSGLYYNGLKVLNMAAEND  166 (178)
T ss_dssp             SCBCCEEEEEEEETTEEHHHHHHTTC
T ss_pred             CCCCEEEEEEEEECCEehHhHhhcCC
Confidence            68999999999999999888887763

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.85  E-value=9.4e-21  Score=142.06  Aligned_cols=98  Identities=23%  Similarity=0.357  Sum_probs=80.1

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc------------------
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD------------------   62 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~------------------   62 (114)
                      .|+++|++|+++..+.....+++||+||+|+++|+.  +.+.|+||+.......   +++..                  
T Consensus        73 ~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~g~~~~~~l~~~~~~ip~~~~~  147 (220)
T 2r1b_A           73 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERY---PAGNNDNERLAIARQRIPYRLGR  147 (220)
T ss_dssp             EEEEEEESSSSCEEEECTTCCCCSSSCEEEEEEEET--TEEEEEETTSCCEEEC---C-----------------CHHHH
T ss_pred             EEEEEEECCCCceEEEeCceEecCCceEEEEEEEeC--CEEEEEECCcceeeec---cCCCccchheecccccccccccc
Confidence            378999999998888765568999999999999998  9999999998766542   11211                  


Q ss_pred             -------------ceeeceeeEEEccCCccCccceeeeceeEEcChhhhhhhccC
Q psy13333         63 -------------AQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        63 -------------~~ln~~~~L~lGg~~~~~~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                                   +-||....|||||.+ ..+||.|||++|.+|+..++..|.+.
T Consensus       148 ~~~~~~~~~~~~~~~~n~~~~l~lGG~p-~~~~F~GCi~~l~ing~~vl~la~~~  201 (220)
T 2r1b_A          148 VVDEWLLDKGRQLTIFNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEN  201 (220)
T ss_dssp             HHHHHHHHHHHGGGSBCCEEEEEESSTT-TTCCCCEEEEEEEETTBCHHHHHHTT
T ss_pred             ccccccccccccceEecCCCcEEECCcc-CCCCCEEEEeEEEECCChHHhHhhcC
Confidence                         114558899999998 58899999999999999998888874

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.85  E-value=5.2e-21  Score=171.06  Aligned_cols=103  Identities=25%  Similarity=0.367  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCC-CcceeeceeeEEEccCCcc
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS-ADAQFNNIQYMYIGRNESM   79 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~-~~~~ln~~~~L~lGg~~~~   79 (114)
                      +|+++|++|+++.++.....+++||+||+|+|+|..  +.++|+||+.+..+..   +++ ..+.||..++|||||.+. 
T Consensus      1119 ~l~~~~~~g~~~~~~~~~~~~v~DG~wH~V~i~r~~--~~~~l~VD~~~~~~~~---~~g~~~~~~~~~~~l~lGg~~~- 1192 (1245)
T 3qcw_A         1119 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERY---PAGRQLTIFNSQATIIIGGKEQ- 1192 (1245)
T ss_dssp             EEEEEEESSSCCEEEECCSCCCBSSSCEEEEEEEET--TEEEEEETTSCCEEEC---CCSCCCCCBCSEEEEEESSTTT-
T ss_pred             EEEEEEECCCCceEEecCCcEecCCCeEEEEEEECC--CEEEEEECCeeeeecc---CCcceeEEeccCceEEECCccC-
Confidence            489999999988888776779999999999999998  9999999998766542   222 344689999999999865 


Q ss_pred             CccceeeeceeEEcChhhhhhhccCCCCCCce
Q psy13333         80 TEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR  111 (114)
Q Consensus        80 ~~GF~GCls~v~~N~i~plk~a~~~~~~~~v~  111 (114)
                      .+||.||||+|+||+++|||+|++++  ++|+
T Consensus      1193 ~~~F~Gcls~v~~n~~~pl~~a~~~~--~~v~ 1222 (1245)
T 3qcw_A         1193 GQPFQGQLSGLYYNGLKVLNMAAEND--ANIA 1222 (1245)
T ss_dssp             TCCCCEEEEEEEETTBCHHHHHHTTC--TTEE
T ss_pred             CCCCEEEEceEEECChHHHHHhhcCC--CCeE
Confidence            69999999999999999999999974  4554

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=99.84  E-value=2.3e-20  Score=140.87  Aligned_cols=99  Identities=23%  Similarity=0.328  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccC
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMT   80 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~   80 (114)
                      .|+++|++|+++..+.....+++||+||+|+++|+.  +.+.|+||+.......  .+++....|+....|||||... .
T Consensus       101 ~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~--~~~~L~VD~~~~~~~~--~~~~~~~~l~~~~~lylGG~p~-~  175 (226)
T 2r1d_A          101 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERY--PAGRQLTIFNSQATIIIGGKEQ-G  175 (226)
T ss_dssp             EEEEEEESSSCEEEEECCSSCCCSSSCEEEEEEEET--TEEEEEETTSCCEEEC--CSSCCCCCBCSEEEEEESSTTT-T
T ss_pred             EEEEEEECCCCcEEEEeCCeEecCCCCEEEEEEEeC--CEEEEEEcCccceEEe--cCCCcceeccCCCeEEEccccC-C
Confidence            378999999999888765568999999999999998  9999999998655432  1224456789999999999875 5


Q ss_pred             ccceeeeceeEEcChhhhhhhccC
Q psy13333         81 EGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        81 ~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                      .||.|||++|.+|+..++..|.+.
T Consensus       176 ~~F~GCi~~v~ing~~vl~la~~~  199 (226)
T 2r1d_A          176 QPFQGQLSGLYYNGLKVLNMAAEN  199 (226)
T ss_dssp             CCCCEEEEEEEETTBCHHHHHHTT
T ss_pred             CCCeEEEeeEEECCEeHHhhhhcc
Confidence            899999999999999988888765

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.84  E-value=3.1e-20  Score=135.84  Aligned_cols=90  Identities=20%  Similarity=0.314  Sum_probs=77.3

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++.++++. .+++||+||+|.++|+.  +.++|+||+........   |+....|++..+|||||...  
T Consensus        73 ~l~~~~~~G~~~~~l~s~-~~v~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~---~~~~~~l~~~~~lylGG~p~~~  146 (191)
T 3v64_A           73 HLQLSYDLGSQPVVLRST-VKVNTNRWLRIRAHREH--REGSLQVGNEAPVTGSS---PLGATQLDTDGALWLGGLQKLP  146 (191)
T ss_dssp             EEEEEEESSSCCEEEEEE-EECTTSSCEEEEEEEET--TEEEEEETTSCCEEEEC---CTTCCCEEECSEEEESCCSSCC
T ss_pred             EEEEEEECCCccEEEecC-ccccCCCCEEEEEEEeC--CEEEEEECCeeeEeEEC---CCCcceeccCCceEEcccCccc
Confidence            378999999988877753 57999999999999998  99999999988777763   36677899999999999742  


Q ss_pred             --------cCccceeeeceeEEcChh
Q psy13333         79 --------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 --------~~~GF~GCls~v~~N~i~   96 (114)
                              ...||.|||++|++|+..
T Consensus       147 ~~~~~~~~~~~~F~GCi~~l~in~~~  172 (191)
T 3v64_A          147 VGQALPKAYGTGFVGCLRDVVVGHRQ  172 (191)
T ss_dssp             SSCCSCGGGTSBCEEEEEEEEETTEE
T ss_pred             ccccccccccCCceEEeeEEEECCEE
Confidence                    268999999999999985

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.82  E-value=5.1e-20  Score=135.05  Aligned_cols=92  Identities=22%  Similarity=0.346  Sum_probs=77.0

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++..+.+ ..+++||+||+|.++|+.  +.++|+||.........   ++....|++...|||||...  
T Consensus        72 ~l~~~~~~G~g~~~~~s-~~~l~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~---~~~~~~l~~~~~lyvGG~p~~~  145 (195)
T 3sh4_A           72 HLVFRYQLGSGEARLVS-EDPINDGEWHRVTALREG--RRGSIQVDGEELVSGRS---PGPNVAVNAKGSVYIGGAPDVA  145 (195)
T ss_dssp             EEEEEEECSSCEEEEEE-EEECCSSSCEEEEEEEET--TEEEEEETTCCCEEEEC---CSSCCCCCCCSCEEESCCTTHH
T ss_pred             EEEEEEECCCCcEEEEc-CceeCCCCeEEEEEEEeC--CEEEEEECCeeeeeeeC---CCCcccccCCCCEEECCCCCcc
Confidence            37899999998877764 458999999999999998  99999999987776652   25566789999999999752  


Q ss_pred             ------cCccceeeeceeEEcChhhh
Q psy13333         79 ------MTEGFIGCVSRVEFDDIYPL   98 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~pl   98 (114)
                            ...||.|||++|++|+..|+
T Consensus       146 ~~~~~~~~~~F~GCi~~l~in~~~~~  171 (195)
T 3sh4_A          146 TLTGGRFSSGITGCVKNLVLHSARPG  171 (195)
T ss_dssp             HHTTTSCCCCCSEEEEEEEEEECCTT
T ss_pred             cccccccccCCEEEEEEEEECCcCCC
Confidence                  37899999999999976655

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.82  E-value=2.5e-19  Score=130.11  Aligned_cols=97  Identities=14%  Similarity=0.283  Sum_probs=80.1

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++..+.+ ...++||+||+|.++|+.  +.++|+||+.......   +++....|+.. +||+||...  
T Consensus        64 ~l~~~~~~G~~~~~~~~-~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~g~~~~l~~~-~l~iGG~~~~~  136 (182)
T 2r16_A           64 RVKLTVNLGKGPETLFA-GYNLNDNEWHTVRVVRRG--KSLKLTVDDQQAMTGQ---MAGDHTRLEFH-NIETGIITERR  136 (182)
T ss_dssp             EEEEEEESSSCCEEEEE-CSSCCSSSCEEEEEEEET--TEEEEEETTCCEEEEE---CCSSCCCEEEE-EEEESSCCCCT
T ss_pred             EEEEEEECCCCceEEEc-CcccCCCCeEEEEEEEEC--CEEEEEECCceeEeEE---CCCCccEEecc-CeEECCccccc
Confidence            37899999998877764 468999999999999998  9999999998776655   23556678887 799999742  


Q ss_pred             ----cCccceeeeceeEEcChhhhhhhccC
Q psy13333         79 ----MTEGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        79 ----~~~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                          ...||.|||++|++|+...+..|...
T Consensus       137 ~~~~~~~~F~GCi~~l~in~~~~~~~~~~~  166 (182)
T 2r16_A          137 YLSSVPSNFIGHLQSLTFNGMAYIDLCKNG  166 (182)
T ss_dssp             TCSSCCCCCEEEEEEEEETTEEHHHHHHHT
T ss_pred             ccCCCCCCCEEEEeEEEECCEEhHHHHhcC
Confidence                25799999999999999877777654

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.81  E-value=2.5e-19  Score=131.81  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---   78 (114)
                      |+++|++|+++..+++ ..+++||+||+|.++|+.  +.++|+||+.......   +++....|+....|||||...   
T Consensus        87 l~~~~~~G~g~~~v~s-~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~~~~~~l~~~~~lylGG~p~~~~  160 (204)
T 1pz7_A           87 VQMMYDLGSKPVVLRS-TVPINTNHWTHIKAYRVQ--REGSLQVGNEAPITGS---SPLGATQLDTDGALWLGGMERLSV  160 (204)
T ss_dssp             EEEEEESSSCCEEEEE-EEECCSSSCEEEEEEEET--TEEEEEETTSCCEEEE---CCSSCCCEEECCEEEESSCSCCST
T ss_pred             EEEEEECCCCeEEEEC-CcccCCCCeEEEEEEEeC--CEEEEEECCcceEEEE---CCCCCceEcCCCCEEEecCCCccc
Confidence            7899999998877764 358999999999999998  9999999998777665   235566799999999999752   


Q ss_pred             -------cCccceeeeceeEEcChhh-h-hhhcc
Q psy13333         79 -------MTEGFIGCVSRVEFDDIYP-L-KLLFQ  103 (114)
Q Consensus        79 -------~~~GF~GCls~v~~N~i~p-l-k~a~~  103 (114)
                             ...||.|||++|++|+... | +.|..
T Consensus       161 ~~~~~~~~~~~F~GCi~~l~in~~~~dl~~~~~~  194 (204)
T 1pz7_A          161 AHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALN  194 (204)
T ss_dssp             TTTSCGGGGSBCEEEEEEEEETTEECCTTTSCSS
T ss_pred             ccccccccCCCceEEEEEEEECCEEccchhhhhc
Confidence                   2679999999999999853 4 34444

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.81  E-value=3.1e-19  Score=130.15  Aligned_cols=91  Identities=18%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++..+++ ..+++||+||+|.++|+.  +.++|+||+........   ++....|+...+|||||.+.  
T Consensus        73 ~l~~~~~~G~g~~~l~s-~~~l~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~---~~~~~~l~~~~~lyvGG~p~~~  146 (189)
T 3pve_A           73 HLEFRYDLGKGAAIIRS-KEPIALGTWVRVFLERNG--RKGALQVGDGPRVLGES---PVPHTMLNLKEPLYVGGAPDFS  146 (189)
T ss_dssp             EEEEEEESSSCEEEEEC-SSCCCTTSEEEEEEEEET--TEEEEEETTSCCEEEEC---CSSCCCCCCCSCEEESCCSCGG
T ss_pred             EEEEEEecCCCCEEEEc-CcccCCCCEEEEEEEEeC--CEEEEEECCceeEeEEc---CCCcceecCCCCEEECCcCchh
Confidence            37899999998877774 468999999999999998  99999999987776652   35666789999999999742  


Q ss_pred             -------cCccceeeeceeEEcChhh
Q psy13333         79 -------MTEGFIGCVSRVEFDDIYP   97 (114)
Q Consensus        79 -------~~~GF~GCls~v~~N~i~p   97 (114)
                             ...||.|||++|++|+...
T Consensus       147 ~~~~~~~~~~~F~GCi~~v~ing~~l  172 (189)
T 3pve_A          147 KLARGAAVASGFDGAIQLVSLRGHQL  172 (189)
T ss_dssp             GSCGGGCCCSBCEEEEEEEEETTEEC
T ss_pred             hcccccccCCCCcEEceEEEECCEEc
Confidence                   2689999999999999875

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.80  E-value=8.5e-19  Score=126.58  Aligned_cols=99  Identities=20%  Similarity=0.375  Sum_probs=77.0

Q ss_pred             CeEEEEEcCCeeEE-EE-ecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc
Q psy13333          1 HLRVVFDFGFERQE-LI-FPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~-l~-~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~   78 (114)
                      .|+++|++|+++.+ +. ....+++||+||+|.++|+.  +.+.|+||+.......   +++....++....|||||.+.
T Consensus        63 ~l~~~~~~G~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~~~~~~l~~~~~l~lGG~p~  137 (184)
T 2h0b_A           63 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNL--RQVTISVDGILTTTGY---TQEDYTMLGSDDFFYVGGSPS  137 (184)
T ss_dssp             EEEEEEEESSCEEEEEECCSSSCSSSSSCEEEEEEEET--TEEEEEETTTEEEEEE---CSTTCCCEEECSEEEESCCTT
T ss_pred             EEEEEEECCCCeEEEEEecCCcccCCCCeEEEEEEEeC--CEEEEEEcCceeeeeE---CCCCceeccCCCCEEECCCCc
Confidence            37899999998744 22 23458999999999999998  9999999997665544   224445678888999999753


Q ss_pred             --------cCccceeeeceeEEcChh----hhhhhccC
Q psy13333         79 --------MTEGFIGCVSRVEFDDIY----PLKLLFQE  104 (114)
Q Consensus        79 --------~~~GF~GCls~v~~N~i~----plk~a~~~  104 (114)
                              ...||.|||++|.+|+..    ..++|.++
T Consensus       138 ~~~~~~~~~~~~F~GCi~~v~in~~~~~l~l~~~a~~~  175 (184)
T 2h0b_A          138 TADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQG  175 (184)
T ss_dssp             GGGSTTCSCCCBCEEEEEEEEEEESSCEECHHHHHHHC
T ss_pred             cccCcCCcccCCCEEEeeEEEECCEEcchhHHHHHhcC
Confidence                    378999999999999975    45566544

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.78  E-value=1.5e-18  Score=138.59  Aligned_cols=98  Identities=23%  Similarity=0.340  Sum_probs=82.4

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCC-CcceeeceeeEEEccCCcc
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS-ADAQFNNIQYMYIGRNESM   79 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~-~~~~ln~~~~L~lGg~~~~   79 (114)
                      +|+++|++|+++..+++...+++||+||+|+++|..  +.+.|+||+.......   +++ ..+.++....|||||... 
T Consensus       287 ~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~v~r~~--~~~~L~VD~~~~~~~~---~~g~~~~~~~~~~~lylGG~p~-  360 (410)
T 3asi_A          287 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERY---PAGRQLTIFNSQATIIIGGKEQ-  360 (410)
T ss_dssp             EEEEEEESSSSCEEEECCSCCCCSSSCEEEEEEEET--TEEEEEETTSCCEEEC---CSSCCCCCBCCEEEEEESSTTT-
T ss_pred             EEEEEEECCCCceEEecCccCcCCCCeEEEEEEEEC--CEEEEEECCcceeccc---CCCccceeeeccceEEECCccc-
Confidence            378999999988777765578999999999999998  9999999998766543   223 234578899999999875 


Q ss_pred             CccceeeeceeEEcChhhhhhhccC
Q psy13333         80 TEGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        80 ~~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                      ..+|.|||++|.+|+..+|+.|...
T Consensus       361 ~~~F~GCi~~v~ing~~~l~~a~~~  385 (410)
T 3asi_A          361 GQPFQGQLSGLYYNGLKVLNMAAEN  385 (410)
T ss_dssp             TCCCCEEEEEEEETTBCHHHHHHTT
T ss_pred             CCCCEEEEEEEEECCHHHHHHHhcc
Confidence            4899999999999999999999865

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.76  E-value=4.2e-18  Score=122.76  Aligned_cols=92  Identities=12%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++..+.+ ...++||+||+|.++|+.  +.+.|+||+.......      ....++. ..|||||...  
T Consensus        63 ~l~~~~~~g~~~~~~~s-~~~vnDG~WH~V~v~~~~--~~~~L~VD~~~~~~~~------~~~~l~~-~~lylGG~p~~~  132 (170)
T 1d2s_A           63 RPEIQLHNHWAQLTVGA-GPRLDDGRWHQVEVKMEG--DSVLLEVDGEEVLRLR------QVSGHPI-MRIALGGLLFPA  132 (170)
T ss_dssp             EEEEEEESSSCEEEEEC-SCCCCSSSCEEEEEEEET--TEEEEEETTEEEEEET------TCCCCCE-EEEEESSCSSCG
T ss_pred             EEEEEEECCCceEEEeC-CCccCCCCCEEEEEEEeC--CEEEEEECCeeeeeec------cCCCccc-ccEEEECcccch
Confidence            37899999998766643 458999999999999998  9999999987654432      1122444 7999999742  


Q ss_pred             ------cCccceeeeceeEEcChhh--hhhhc
Q psy13333         79 ------MTEGFIGCVSRVEFDDIYP--LKLLF  102 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~p--lk~a~  102 (114)
                            ...||.|||++|.+|+..+  ++.|+
T Consensus       133 ~~~~~~~~~~F~GCi~~l~in~~~~~l~~~~~  164 (170)
T 1d2s_A          133 SNLRLPLVPALDGCLRRDSWLDKQAEISASAP  164 (170)
T ss_dssp             GGSSSCCCCCCCEEEEEEEESCGGGEEEEECS
T ss_pred             hhcccCCCCCeeeEeEEeEECCccceeeeccc
Confidence                  3689999999999999763  44444

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.72  E-value=5.7e-17  Score=119.38  Aligned_cols=92  Identities=13%  Similarity=0.246  Sum_probs=66.8

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|+++..+.+ ...++||+||+|.++|+.  +.+.|+||+........ ++.+..........|||||...  
T Consensus        75 ~l~~~~~~g~~~~~~~s-~~~vnDG~WH~V~v~r~~--~~~~L~VD~~~~~~~~~-~~~~~~~~~~~~~~lyiGG~p~~~  150 (205)
T 1f5f_A           75 RPEIQLHNHWAQLTVGA-GPRLDDGRWHQVEVKMEG--DSVLLEVDGEEVLRLRQ-VSGPLTSKRHPIMRIALGGLLFPA  150 (205)
T ss_dssp             EEEEEEESSSCEEEEEC-SCCCCSSSCEEEEEEEET--TEEEEEETTEEEEEECS-CCCCC----CCEEEEEESSCSSCG
T ss_pred             EEEEEEECCCceEEEec-CCccCCCCCEEEEEEEeC--CEEEEEECCeeeeeeec-cCCCcccccCCCceEEEeCccCcc
Confidence            37899999998766643 458999999999999998  99999999876544320 1101111233447999999742  


Q ss_pred             ------cCccceeeeceeEEcChh
Q psy13333         79 ------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~   96 (114)
                            ...||.|||++|.+|+..
T Consensus       151 ~~~~~~~~~~F~GCi~~l~i~~~~  174 (205)
T 1f5f_A          151 SNLRLPLVPALDGCLRRDSWLDKQ  174 (205)
T ss_dssp             GGSSSCCCCCCCEEEEEEECSCGG
T ss_pred             ccccccCCCCeeEEeeeeEECCee
Confidence                  368999999999977663

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.70  E-value=7.6e-17  Score=127.21  Aligned_cols=90  Identities=18%  Similarity=0.341  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|++..++++ ...++||+||+|+++|+.  +.+.|+||+.......   +++....|+....|||||...  
T Consensus        80 ~l~~~~~~g~~~~~~~~-~~~~~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~---~~g~~~~l~~~~~l~vGG~p~~~  153 (383)
T 2jd4_A           80 RLHFMFDLGKGRTKVSH-PALLSDGKWHTVKTEYIK--RKAFMTVDGQESPSVT---VVGKATTLDVERKLYLGGLPSHY  153 (383)
T ss_dssp             EEEEEEECSSCEEEEEC-CCCCTTSSCEEEEEEEET--TEEEEEETTEECCCEE---CCSSCCCCCCCSEEEESSCCTTC
T ss_pred             EEEEEEECCCCeEEEeC-cceecCCCcEEEEEEEeC--CEEEEEEcCcccccee---cCCCcceecCCCCeEEeccCccc
Confidence            37899999999888875 468999999999999998  9999999997766554   225566789999999999742  


Q ss_pred             -------cCccceeeeceeEEcChh
Q psy13333         79 -------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 -------~~~GF~GCls~v~~N~i~   96 (114)
                             ...||.|||++|.+|+..
T Consensus       154 ~~~~~~~~~~~F~GCi~~l~in~~~  178 (383)
T 2jd4_A          154 RARNIGTITHSIPACIGEIMVNGQQ  178 (383)
T ss_dssp             CCCSSCSCCSBCCEEEEEEEETTEE
T ss_pred             ccccccccCCCceEEeEEEEECCEE
Confidence                   258999999999999974

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.69  E-value=1.2e-16  Score=126.99  Aligned_cols=88  Identities=18%  Similarity=0.338  Sum_probs=74.0

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---   78 (114)
                      |+++|++|+++.++++ ...++||+||+|.++|+.  +.+.|+||+.......    ++....|++...|||||...   
T Consensus        95 l~~~~~~g~g~~~~~~-~~~~~Dg~WH~V~v~r~~--~~~~L~VD~~~~~~~~----~g~~~~l~~~~~l~vGG~p~~~~  167 (394)
T 1dyk_A           95 PYFSYDLGSGDTSTMI-PTKINDGQWHKIKIVRVK--QEGILYVDDASSQTIS----PKKADILDVVGILYVGGLPINYT  167 (394)
T ss_dssp             EEEEEESSSCEEEEEC-CSCCCSSSCEEEEEEEET--TEEEEEETTEEEEEEC----STTCCCCCCCSEEEESSCCTTCC
T ss_pred             EEEEEECCCCceEEEc-ccccCCCCEEEEEEEEeC--CEEEEEEcCcccceec----CCCCceecCCCCEEEcccCCccc
Confidence            7899999999888875 458999999999999998  9999999997655442    25556789989999999742   


Q ss_pred             ------cCccceeeeceeEEcChh
Q psy13333         79 ------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~   96 (114)
                            ...+|.|||++|.+|+..
T Consensus       168 ~~~~~~~~~~F~GCi~~l~in~~~  191 (394)
T 1dyk_A          168 TRRIGPVTYSLDGCVRNLHMEQAP  191 (394)
T ss_dssp             CCSSCSCCSBCSEEEEEEEESSSC
T ss_pred             ccccccCCCCccEeeeEEEECCEE
Confidence                  257899999999999975

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.68  E-value=9.3e-17  Score=128.27  Aligned_cols=89  Identities=24%  Similarity=0.424  Sum_probs=71.6

Q ss_pred             CeEEEEEcCCeeEEEEec-CccCCCCCceEEEEEEecCCCE-EEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc
Q psy13333          1 HLRVVFDFGFERQELIFP-NKHFGLGQYHDIRIRRKNSGAT-LLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~-~~~l~DgqwH~V~i~R~~~~k~-~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~   78 (114)
                      .|+++|++|+++.+++.. ..+++||+||+|.++|+.  ++ ++|+||........     .....|+....|||||...
T Consensus        62 ~l~~~~~~G~g~~~~~~~s~~~vnDg~WH~V~v~r~~--~~~~~l~VD~~~~~~~~-----~~~~~l~~~~~lyvGG~p~  134 (410)
T 3asi_A           62 YLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT--SNLHTVKIDTKITTQIT-----AGARNLDLKSDLYIGGVAK  134 (410)
T ss_dssp             EEEEEEESSSCEEEEECCCSSCSCSSSCEEEEEEECT--TCEEEEEETTEEEEEEC-----TTCCCCCBCSCEEESCCCG
T ss_pred             EEEEEEECCCCcEEEEeccCcEeCCCCeEEEEEEEcC--CceEEEEECCEeceecc-----CCccceecCCceEECcccc
Confidence            378999999999888743 458999999999999997  65 89999987543321     2345788888999999752


Q ss_pred             -----------cCccceeeeceeEEcChh
Q psy13333         79 -----------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 -----------~~~GF~GCls~v~~N~i~   96 (114)
                                 ...||.|||++|.+|+..
T Consensus       135 ~~~~~~~~~~~~~~~F~GCi~~l~ing~~  163 (410)
T 3asi_A          135 ETYKSLPKLVHAKEGFQGCLASVDLNGRL  163 (410)
T ss_dssp             GGGGGSCTTCCCSSBCCEEEEEEESSSCC
T ss_pred             chhhhhhhhcccccCchhheeheeeCCcc
Confidence                       257999999999999985

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.68  E-value=1.7e-16  Score=126.17  Aligned_cols=89  Identities=20%  Similarity=0.342  Sum_probs=72.1

Q ss_pred             CeEEEEEcCCeeEEEEec---CccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC
Q psy13333          1 HLRVVFDFGFERQELIFP---NKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~---~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~   77 (114)
                      .|+++|++|++...+.+.   ..+++||+||+|++.|..  +.+.|+||+.......   +++....++....|||||..
T Consensus       268 ~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v~~~~--~~~~L~VD~~~~~~~~---~~~~~~~l~~~~~lylGG~p  342 (394)
T 1dyk_A          268 KLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIK--NRLELVVDGNQVDAQS---PNSASTSADTNDPVFVGGFP  342 (394)
T ss_dssp             EEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEET--TEEEEEETTEEEEEEC---CCTTCCCBCCCBCCEESCCC
T ss_pred             EEEEEEECCCCcEEEEEecCCCccccCCceEEEEEEEeC--CEEEEEECCccccccc---CCCcceecccCCCEEEcCCC
Confidence            378999999887666553   458999999999999998  9999999997654432   22345678888999999975


Q ss_pred             c--------cCccceeeeceeEEcC
Q psy13333         78 S--------MTEGFIGCVSRVEFDD   94 (114)
Q Consensus        78 ~--------~~~GF~GCls~v~~N~   94 (114)
                      .        ...+|.|||++|++|+
T Consensus       343 ~~~~~~~~~~~~~F~GCi~~v~in~  367 (394)
T 1dyk_A          343 GGLNQFGLTTNIRFRGCIRSLKLTK  367 (394)
T ss_dssp             TTCCCTTCSCCCCCEEEEEEEEEEC
T ss_pred             ccccccccccCCCCceeeeEEEECC
Confidence            2        3789999999999998

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.66  E-value=4.5e-16  Score=122.75  Aligned_cols=91  Identities=13%  Similarity=0.292  Sum_probs=69.2

Q ss_pred             CeEEEEEcCCeeEEEEec---CccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC
Q psy13333          1 HLRVVFDFGFERQELIFP---NKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~---~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~   77 (114)
                      .|+++|++|+++..+.+.   ...++||+||+|+++|..  +.+.|+||+.......   ++.....++....|||||..
T Consensus       256 ~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~--~~~~L~VD~~~~~~~~---~~~~~~~l~~~~~lylGG~p  330 (383)
T 2jd4_A          256 KVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSK--HRIVLTVDGNSVRAES---PHTHSTSADTNDPIYVGGYP  330 (383)
T ss_dssp             EEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEET--TEEEEEETTEEEEEC-------CCCCBCCCEEEEESCCC
T ss_pred             EEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcC--CEEEEEECCeeccccc---CCCCcccccCCCCEEEeccc
Confidence            378999999987666543   247999999999999998  9999999997644432   22334578899999999974


Q ss_pred             c--------cCccceeeeceeEEcChh
Q psy13333         78 S--------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        78 ~--------~~~GF~GCls~v~~N~i~   96 (114)
                      .        ...+|.|||++|++|+..
T Consensus       331 ~~~~~~~~~~~~~F~GCi~~v~in~~~  357 (383)
T 2jd4_A          331 AHIKQNSLSSRASFRGCVRNLRLSRGS  357 (383)
T ss_dssp             TTSCCTTCSCCCBCEEEEEEEEEC---
T ss_pred             cccccCCccccCCCceEccEEEECCCC
Confidence            2        267999999999999963

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.64  E-value=1.1e-15  Score=122.82  Aligned_cols=89  Identities=10%  Similarity=0.103  Sum_probs=70.2

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceee---ceeeEEEccCC
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFN---NIQYMYIGRNE   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln---~~~~L~lGg~~   77 (114)
                      .|+++|++|++...+.+ ..+++||+||+|.++|+.  +.++|+||+........   ++....|+   ....|||||..
T Consensus        98 ~l~~~~~~g~~~~~~~~-~~~~nDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~---~g~~~~l~~~~~~~~lyvGG~p  171 (422)
T 1h30_A           98 RLELQLRYNGVGRVTSS-GPVINHGMWQTISVEELA--RNLVIKVNRDAVMKIAV---AGDLFQPERGLYHLNLTVGGIP  171 (422)
T ss_dssp             EEEEEEEETTEEEEEEE-EEECCSSCCEEEEEEECS--SEEEEEETTEEEEEEEC---CSCSSEEETTEEECEEEESSCS
T ss_pred             EEEEEEECCCCcEEEec-CceecCCCCEEEEEEEcC--CEEEEEECCeeeEEeec---CCcccccccccccceEEEecCc
Confidence            37899999998766543 458999999999999998  99999999986655542   24555677   67899999975


Q ss_pred             c--------cCccceeeeceeEEcCh
Q psy13333         78 S--------MTEGFIGCVSRVEFDDI   95 (114)
Q Consensus        78 ~--------~~~GF~GCls~v~~N~i   95 (114)
                      .        ...||.|||++|.+|+.
T Consensus       172 ~~~~~~~~~~~~~F~GCi~~v~i~~~  197 (422)
T 1h30_A          172 FHEKDLVQPINPRLDGCMRSWNWLNG  197 (422)
T ss_dssp             SCGGGSSSCCCCCCCEEEEEEEEC--
T ss_pred             ccccccccccCCCCeEEEEEeEECCc
Confidence            2        25799999999999543

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.61  E-value=3.9e-15  Score=124.03  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCC---------eEEEeecCCCCcceeece--e
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEP---------KEFHFNIKDSADAQFNNI--Q   69 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~---------~~~~~~l~~~~~~~ln~~--~   69 (114)
                      .|+++|++|+++.++++...+++||+||+|.++|+.  +.+.|+||....         ....   +++....||+.  .
T Consensus        68 ~l~~~~~~G~g~~~l~~~~~~~~dg~WH~V~v~r~~--~~~~l~Vd~~~~~~~~~~~~~~~~~---~~g~~~~L~l~~~~  142 (608)
T 2wjs_A           68 KVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTG--RNGSISVRALDGPKASMVPSTYHSV---SPPGYTILDVDANA  142 (608)
T ss_dssp             EEEEEEESSSCEEEEECCSCCCTTSCCEEEEEEEET--TEEEEEEEESSSTTTTSCCCCEEEE---CCSSCCSCCCCSSC
T ss_pred             EEEEEEECCCCceEEeeCCccccCCceEEEEEEEeC--CEEEEEEecccCccccccccccccc---cCCcceeeccCCCC
Confidence            378999999999888865568999999999999998  999999998643         1233   23455556665  6


Q ss_pred             eEEEccCCc--------cCccceeeeceeEEcChhh
Q psy13333         70 YMYIGRNES--------MTEGFIGCVSRVEFDDIYP   97 (114)
Q Consensus        70 ~L~lGg~~~--------~~~GF~GCls~v~~N~i~p   97 (114)
                      .|||||...        ...||+|||++|.+|+...
T Consensus       143 ~l~vGG~p~~~~~~~~~~~~~F~GCi~~l~in~~~i  178 (608)
T 2wjs_A          143 MLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPI  178 (608)
T ss_dssp             EEEESSCCTTSCCCTTCCCCCCCEEECCCEESSSBC
T ss_pred             cEEeCCcCccccCCcccccCCccEEEEEEEECCEEc
Confidence            799999752        1589999999999999753

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.55  E-value=1.2e-14  Score=130.14  Aligned_cols=88  Identities=24%  Similarity=0.431  Sum_probs=71.0

Q ss_pred             eEEEEEcCCeeEEEEec-CccCCCCCceEEEEEEecCCC-EEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-
Q psy13333          2 LRVVFDFGFERQELIFP-NKHFGLGQYHDIRIRRKNSGA-TLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~-~~~l~DgqwH~V~i~R~~~~k-~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-   78 (114)
                      |+++|++|+++..+++. ..+++||+||+|+++|+.  + ...|+||+.......     .....|++..+|||||... 
T Consensus       895 l~~~~~~G~g~~~~~~~s~~~vnDg~WH~V~~~~~~--~~~~~L~VD~~~~~~~~-----~~~~~l~~~~~lylGG~p~~  967 (1245)
T 3qcw_A          895 LHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT--SNLHTVKIDTKITTQIT-----AGARNLDLKSDLYIGGVAKE  967 (1245)
T ss_dssp             EEEEEESSSCCEEEECCCSSCSCSSSCEEEEEEECT--TCEEEEEETTEEEEEEC-----CCCCCCCEEEEEEESCCCGG
T ss_pred             EEEEEECCCCcEEEEecCcccccCCCeEEEEEEEeC--CeeEEEEECCEeeeecc-----CCcceeccCCCeEECccccc
Confidence            78999999999887754 359999999999999997  5 478999996543321     3345688899999999742 


Q ss_pred             ----------cCccceeeeceeEEcChh
Q psy13333         79 ----------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 ----------~~~GF~GCls~v~~N~i~   96 (114)
                                ...||.|||++|++|+..
T Consensus       968 ~~~~~~~~~~~~~~F~GCi~~l~ing~~  995 (1245)
T 3qcw_A          968 TYKSLPKLVHAKEGFQGCLASVDLNGRL  995 (1245)
T ss_dssp             GGGGCCTTCCCSSBCCEEEEEEEETTBC
T ss_pred             chhhhcccccccCCcEEEeeeEEECCEE
Confidence                      257999999999999985

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.53  E-value=4.8e-14  Score=117.50  Aligned_cols=93  Identities=16%  Similarity=0.288  Sum_probs=67.6

Q ss_pred             eEEEEEcCCee---EEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc
Q psy13333          2 LRVVFDFGFER---QELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES   78 (114)
Q Consensus         2 Lq~ry~Lg~~~---~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~   78 (114)
                      |+++|++|++.   .++......++||+||+|+++|..  +.+.|+||+.......  +  .....++. ..|||||...
T Consensus       444 l~~~~~~g~~~~~~~~l~~~~~~l~DG~WH~V~v~~~~--~~~~L~VD~~~~~~~~--~--~~~~~l~~-~~lylGG~p~  516 (608)
T 2wjs_A          444 LEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTR--GIFTVQIDEDRRHMQN--L--TEEQPIEV-KKLFVGGAPP  516 (608)
T ss_dssp             EEEEEEC----CEEEEECCCSSCSSSSSCEEEEEEECS--SEEEEEESSSCCEEEE--C--CCCSCBCC-SCEEESCCCC
T ss_pred             EEEEEECCCCceeEEEEeCCCcccCCCCeEEEEEEEeC--CEEEEEECCccccccc--C--Cccccccc-CceEEeCCCc
Confidence            78899999864   344434468999999999999998  9999999998765443  1  33334543 6899999752


Q ss_pred             --------cCccceeeeceeEEcChh-hhhhh
Q psy13333         79 --------MTEGFIGCVSRVEFDDIY-PLKLL  101 (114)
Q Consensus        79 --------~~~GF~GCls~v~~N~i~-plk~a  101 (114)
                              ...+|.|||++|++|+.. ++..+
T Consensus       517 ~~~~~~~~~~~~F~GCi~~v~in~~~ldl~~~  548 (608)
T 2wjs_A          517 EFQPSPLRNIPAFQGCVWNLVINSIPMDFAQP  548 (608)
T ss_dssp             --------CCCCCCEEEEEEEETTEECCCSSC
T ss_pred             cccccccccCCCCcEEEEEEEECCEEccchhh
Confidence                    367999999999999975 45444

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.25  E-value=7.2e-12  Score=100.50  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             EEEEEcCCeeEEEEecCccCCCCCceEE--EEEEecCCCEEEEEECCCCCeEEEee--cCCCC----cceeeceeeEEEc
Q psy13333          3 RVVFDFGFERQELIFPNKHFGLGQYHDI--RIRRKNSGATLLMQVDSYEPKEFHFN--IKDSA----DAQFNNIQYMYIG   74 (114)
Q Consensus         3 q~ry~Lg~~~~~l~~~~~~l~DgqwH~V--~i~R~~~~k~~~lqVD~~~~~~~~~~--l~~~~----~~~ln~~~~L~lG   74 (114)
                      ++.|+++++. ++++. .+++||+||+|  .+.|+.  +.  |+||.........+  + ++.    ...++....||||
T Consensus       296 ~l~~~~~~g~-~~~~~-~~l~DG~WH~V~~~l~~~~--~~--L~vD~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~lyiG  368 (422)
T 1h30_A          296 LVVLAVEHTA-LALME-IKVCDGQEHVVTVSLRDGE--AT--LEVDGTRGQSEVSAAQL-QERLAVLERHLRSPVLTFAG  368 (422)
T ss_dssp             EEEEEETTEE-EEEEE-CCTTSSCCEEEEEEEETTE--EE--EEETTEECEESSCHHHH-HHHHHHHHHHHTSCCEEEES
T ss_pred             eEEEEeCCee-EEEee-ecccCCCEeEeEEEEEEec--cE--EEEeCCccceeechhhc-ccchhhhhhhhccCCceEEc
Confidence            5888999876 45544 68999999999  999986  44  99998655433100  0 000    1125677899999


Q ss_pred             cCCc-------cCccceeeeceeEEcChh-hhhhhc
Q psy13333         75 RNES-------MTEGFIGCVSRVEFDDIY-PLKLLF  102 (114)
Q Consensus        75 g~~~-------~~~GF~GCls~v~~N~i~-plk~a~  102 (114)
                      |.+.       ...||.||| +|++|+.. +|..|.
T Consensus       369 G~p~~~~~~~~~~~~F~GCi-~l~ing~~ldl~~a~  403 (422)
T 1h30_A          369 GLPDVPVTSAPVTAFYRGCM-TLEVNRRLLDLDEAA  403 (422)
T ss_dssp             CCCSCCTTSSSCCSBCCEEE-EEEETTEECCGGGSS
T ss_pred             ccCCCCccccCccCCccccE-EEEECCEEecHHHHH
Confidence            9752       256899999 79999964 455454

>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A

Probab=98.23  E-value=1.1e-05  Score=59.62  Aligned_cols=97  Identities=11%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcce-----eeceeeEEEccC
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ-----FNNIQYMYIGRN   76 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~-----ln~~~~L~lGg~   76 (114)
                      |.+.|.-.+++..+.+..-+|+||+||++.+.=..  ..++|-||-....+..+  . .+...     +.....+++|..
T Consensus       104 l~~~y~~~g~~~~~~f~~v~l~dg~WH~l~l~V~~--~~v~L~vDC~~~~~~~l--~-~~~~~~~~~~~~~~~~~~iGq~  178 (209)
T 2erf_A          104 LDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQE--DRAQLYIDCEKMENAEL--D-VPIQSVFTRDLASIARLRIAKG  178 (209)
T ss_dssp             EEEEEEETTEEEEEEESSCCCCSSSEEEEEEEEET--TEEEEEETTTEEEEEEC--S-SCGGGTCCTTHHHHEEEEESCC
T ss_pred             EEEEEcCCCCEEEEEEeccccCCCcEEEEEEEEEC--CEEEEEEcCeEeEeEEc--c-CCchhccccccCCceEEEEecC
Confidence            56777666556666665568999999999999998  99999999988776663  2 22222     222568999987


Q ss_pred             CccCccceeeeceeEEcChhhhhhhccC
Q psy13333         77 ESMTEGFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        77 ~~~~~GF~GCls~v~~N~i~plk~a~~~  104 (114)
                      ..... |.|=|..+++---..+.++++.
T Consensus       179 ~~~~~-F~G~lq~l~i~~~~s~~~i~~~  205 (209)
T 2erf_A          179 GVNDN-FQGVLQNVRFVFGTTPEDILRN  205 (209)
T ss_dssp             TTTCB-CCEEEEEEEEECSCCHHHHHHT
T ss_pred             CCCCC-CeEEeEEEEEECCCCHHHHHHh
Confidence            66555 9999999988766666666554

>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A

Probab=98.15  E-value=3.5e-05  Score=58.70  Aligned_cols=86  Identities=13%  Similarity=0.204  Sum_probs=64.7

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcce-----eeceeeEEEccC
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ-----FNNIQYMYIGRN   76 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~-----ln~~~~L~lGg~   76 (114)
                      |.+.|.-..++..+.+...+|+||+||++.+.=..  ..++|-||-.......+  . .+...     |.....++||..
T Consensus       114 l~~~Y~~~g~~~~~~f~~~~L~Dg~WH~lalsV~~--~~VtLyvDC~~~~~~~l--~-~~~~~i~~~~~~~~~~~~iGq~  188 (251)
T 1za4_A          114 LDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQE--DRAQLYIDCEKMENAEL--D-VPIQSVFTRDLASIARLRIAKG  188 (251)
T ss_dssp             EEEEEEETTEEEEEEESSCCCCSSSCEEEEEEEET--TEEEEEETTSCCEEEEC--S-SCGGGTSCTTGGGTEEEEESCC
T ss_pred             EEEEEEcCCCeeeEEEecccccCCCEEEEEEEEEC--CEEEEEECCcccceeec--c-CccccccccccCCCcEEEEEec
Confidence            56788766666656665568999999999999998  99999999988777763  2 22222     233567999988


Q ss_pred             CccCccceeeeceeEEc
Q psy13333         77 ESMTEGFIGCVSRVEFD   93 (114)
Q Consensus        77 ~~~~~GF~GCls~v~~N   93 (114)
                      ..... |.|=|..+++=
T Consensus       189 ~~~~~-F~G~lq~l~i~  204 (251)
T 1za4_A          189 GVNDN-FQGVLQNVRFV  204 (251)
T ss_dssp             STTCB-CCEEEEEEEEE
T ss_pred             CCCCC-CeEEeEEEEEE
Confidence            66555 99999998764

>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}

Probab=97.68  E-value=0.00033  Score=53.10  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=65.5

Q ss_pred             eEEEEEcC-CeeEEEEecCc-cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCcc
Q psy13333          2 LRVVFDFG-FERQELIFPNK-HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESM   79 (114)
Q Consensus         2 Lq~ry~Lg-~~~~~l~~~~~-~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~   79 (114)
                      |.+.|.=. ++..++.+... +|+||+||+|.+.=..  ..++|-||=....+..  +  .....++....++||+....
T Consensus       130 l~~~y~~~~g~~q~v~F~~~~~L~Dg~WHklalsV~~--~~VtLyvDC~~~~~~~--l--~~~~~i~~~G~~~lG~~~~~  203 (245)
T 2uur_A          130 VVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVER--SSATLFVDCNRIESLP--I--KPRGPIDIDGFAVLGKLADN  203 (245)
T ss_dssp             EEEEEEBTTSCEEEEEECCCGGGCSSSCEEEEEEEET--TEEEEEETTEEEEEEE--C--CCBCCCCCSSEEEEEEESSC
T ss_pred             EEEEecCCCCCeeEEEecCCccccCCCEEEEEEEEEC--CEEEEEEecCcccccc--c--CCCCccccCCEEEEEEecCC
Confidence            34455322 23355566543 5999999999999998  9999999987766665  3  23456788888999987433


Q ss_pred             Cc-cceeeeceeEEcChhhhhhhcc
Q psy13333         80 TE-GFIGCVSRVEFDDIYPLKLLFQ  103 (114)
Q Consensus        80 ~~-GF~GCls~v~~N~i~plk~a~~  103 (114)
                      .. .|.|=|..+++--. |-.||.+
T Consensus       204 ~~~~f~g~lQ~l~i~~d-p~~a~~~  227 (245)
T 2uur_A          204 PQVSVPFELQWMLIHCD-PLRPRRE  227 (245)
T ss_dssp             TTCBCCEEEEEEEEESC-TTGGGGC
T ss_pred             CCCceEEEeEEEEEEcC-cchhhhh
Confidence            33 69999988876432 4455443

>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A

Probab=97.48  E-value=0.0015  Score=47.92  Aligned_cols=69  Identities=9%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC-------ccCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-------SMTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-------~~~~GF~GCls~v~~   92 (114)
                      .++.||+||+|-++-+.....+.|-||........  +  .....+.....|.||...       .....|.|.|++|++
T Consensus        86 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~--~--~~g~~i~~~g~l~lGq~qd~~gg~f~~~~~f~G~i~~v~i  161 (206)
T 3pvn_A           86 VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKS--L--KKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNM  161 (206)
T ss_dssp             CSSCCSSCEEEEEEEETTTCEEEEEETTEECCCEE--C--CTTCCBCSSCEEEESSCCSBTTBCCCGGGCCCEEEEEEEE
T ss_pred             ccCCCCceEEEEEEEECCCCeEEEEECCEEccccc--c--cCCcEECCCCEEEEccccccCCCCcCCccceEEEEeeEEE
Confidence            47899999999999986335789999996544332  2  333345667789999753       125789999999976

>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*

Probab=97.37  E-value=0.0026  Score=46.64  Aligned_cols=72  Identities=8%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~   92 (114)
                      .++.||+||+|-++.+.....+.|-||........  +  .....+.....|.||....       ....|.|-|+.|++
T Consensus        84 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~--~--~~g~~i~~~g~l~lGq~qd~~gg~f~~~~~f~G~i~~v~i  159 (204)
T 3kqr_A           84 VIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKG--L--RQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYM  159 (204)
T ss_dssp             CCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEE--C--CTTCCBCSSCEEEESSCCSSSSCCCCGGGCCCEEEEEEEE
T ss_pred             cccCCCceEEEEEEEECCCCeEEEEECCEEeeeec--c--CCCCEECCCcEEEEcccccCCCCCcCcccceeEEEeeEEE
Confidence            47899999999999986335788999996544333  2  2333466677899998541       25789999999976


Q ss_pred             -cCh
Q psy13333         93 -DDI   95 (114)
Q Consensus        93 -N~i   95 (114)
                       |-+
T Consensus       160 W~~a  163 (204)
T 3kqr_A          160 WDSV  163 (204)
T ss_dssp             ESSC
T ss_pred             ECcc
Confidence             443

>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A

Probab=97.24  E-value=0.0022  Score=47.24  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE-
Q psy13333         21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF-   92 (114)
Q Consensus        21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~-   92 (114)
                      ++.||+||+|-++.+.....+.|-||......... +  .....+.....|.||....       ....|.|.|++|++ 
T Consensus        93 ~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~~~~~-~--~~g~~i~~~g~l~lG~~~~~~gg~f~~~~~f~G~i~~v~iw  169 (217)
T 3flp_A           93 EIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMEN-V--GKGHQISAGGTVVIGQEQDKIGGGFEEQESWSGELSDLQVW  169 (217)
T ss_dssp             ECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESC-S--STTCCBCSCBEEEESSCCSBTTBCCCGGGCCCEEEEEEEEE
T ss_pred             ccCCCCEEEEEEEEECCCCEEEEEECCEEecceec-c--ccCcEECCCCEEEeCCcccCCCCccCCCCceEEEEeeEEEE
Confidence            68999999999999963358899999966544221 1  2333456678899998542       25789999999976 


Q ss_pred             cCh
Q psy13333         93 DDI   95 (114)
Q Consensus        93 N~i   95 (114)
                      |..
T Consensus       170 ~~a  172 (217)
T 3flp_A          170 DEA  172 (217)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            443

>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}

Probab=96.98  E-value=0.0025  Score=50.46  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---cCccceeeeceeEEcCh
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---MTEGFIGCVSRVEFDDI   95 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---~~~GF~GCls~v~~N~i   95 (114)
                      .++.+|+||+|-+..+..+..+.|-||.........  + .....+.....|+||+...   ....|.|.|..|++=..
T Consensus       216 ~~l~~g~W~HvA~t~d~~~~~~~lYvNG~~~~~~~~--~-~~~~~~~~~~~l~IG~~~~~~~~~~~f~G~IdevrIw~~  291 (355)
T 4dqa_A          216 KPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDW--G-IDGFDPNSDMGFYIGRIYGFKWGERPFHGKMSEVRVWSV  291 (355)
T ss_dssp             SCCCSSCEEEEEEEEETTTTEEEEEETTEEEEEEEC--C-CCCBCTTSTTCEEESCCTTCTTCCCCCEEEEEEEEEESS
T ss_pred             CcccCCCEEEEEEEEECCCCEEEEEECCEEEEEEec--C-CCccccCCCceEEECCCCCCCCCCcceeEEEEEEEEECC
Confidence            489999999999999943389999999966554431  0 1112222336799998643   36789999999987544

>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A

Probab=86.73  E-value=3.4  Score=29.12  Aligned_cols=39  Identities=3%  Similarity=-0.003  Sum_probs=29.4

Q ss_pred             EEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEE
Q psy13333         13 QELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEF   53 (114)
Q Consensus        13 ~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~   53 (114)
                      ..|.....++..|+||+++|.-..  ..+.+-||.......
T Consensus       119 ~~L~~~~~~~~~g~w~~l~I~~~G--~~i~~~vnG~~v~~~  157 (185)
T 4b1m_A          119 SVIAEYKTPIDVNKKYHLKTEAEG--DRFKIYLDDRLVIDA  157 (185)
T ss_dssp             EEEEEEECCCCSSCCEEEEEEEET--TEEEEEETTEEEEEE
T ss_pred             EEeeeccccCCCCCeEEEEEEEEC--CEEEEEECCEEEEEE
Confidence            344332347888999999999998  899999999654433

>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}

Probab=82.63  E-value=12  Score=27.31  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=47.9

Q ss_pred             CCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCC-cceeeceeeEEEccCCc----cCccceeeeceeEE-cC
Q psy13333         23 GLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSA-DAQFNNIQYMYIGRNES----MTEGFIGCVSRVEF-DD   94 (114)
Q Consensus        23 ~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~-~~~ln~~~~L~lGg~~~----~~~GF~GCls~v~~-N~   94 (114)
                      .+++||+|.+.-+. ++..+|-||.....+...  +... -..+ -..+|.||++.-    ..-+|.|=|..+.+ |.
T Consensus       103 ~~~~wntvaf~~d~-~~~~~ly~NG~~V~t~~~--~~~~fi~~i-~ln~~~IG~~~r~sg~~~y~F~G~Id~~~iYn~  176 (191)
T 2v73_A          103 FNRGINTLALKIEK-GIGAKIFLNGSLVKTVSD--PNIKFLNAI-NLNSGFIGKTDRANGYNEYLFRGNIDFMNIYDK  176 (191)
T ss_dssp             CCSSCEEEEEEEET-TTEEEEEETTEEEEEEEC--TTCCCGGGS-CCCEEEESSCCCCSSSCCCCCCEEEEEEEEESS
T ss_pred             cCCceEEEEEEEcC-CccEEEEECCEEEEEEec--ccccceeec-CCceEEEcceeecCCceeeccCCeEEEEEEEcC
Confidence            34599999887775 379999999987776652  1111 2234 455899999742    36789999999965 44

>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*

Probab=82.56  E-value=11  Score=31.10  Aligned_cols=64  Identities=6%  Similarity=0.059  Sum_probs=42.5

Q ss_pred             CCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEc--cCCccCccceeeeceeEE
Q psy13333         22 FGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIG--RNESMTEGFIGCVSRVEF   92 (114)
Q Consensus        22 l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lG--g~~~~~~GF~GCls~v~~   92 (114)
                      ..||+||+|.|+-++. .+..+-||+....+..  +  ..-..+....-+-+|  +..  ..++-|+|..+.+
T Consensus       163 ~~~nkW~fVtItvDR~-g~~~IYING~Lv~s~~--I--t~lG~I~ss~~i~~gi~~~~--d~~~~~~IDef~I  228 (452)
T 1a8d_A          163 YLANKWVFITITNDRL-SSANLYINGVLMGSAE--I--TGLGAIREDNNITLKLDRCN--NNNQYVSIDKFRI  228 (452)
T ss_dssp             SSSSSCEEEEEEECTT-SEEEEEETTEEEEEEE--C--TTCCCCCCCSEEEEEEESCC--CTTCEEEEEEEEE
T ss_pred             ccCCeEEEEEEEECCC-CCEEEEECCEEeeccc--h--hhccceeecCeEEEEEcccC--CCcccceEeeEEE
Confidence            3369999999999964 6779999997766665  3  233344444444444  433  3556688988854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	3e-09
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	0.001
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	0.004

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 3e-09
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +   +  
Sbjct: 66  KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQ- 122

Query: 61  ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
               FN+   + IG  E   + F G +S + ++ +  L +  + D  AN+  +G
Sbjct: 123 -LTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 172

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 1   HLRVVFDFGFERQELIF---PNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
            L    D G  R   I+      H   GQ+H +  ++  +   L++  +           
Sbjct: 60  KLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQV-----DAQS 114

Query: 58  KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPAN 109
            +SA    +    +++G           +    F GC+  ++        L         
Sbjct: 115 PNSASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALE 174

Query: 110 VRSI 113
           +R +
Sbjct: 175 LRGV 178

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 8/95 (8%), Positives = 24/95 (25%), Gaps = 11/95 (11%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L +   +      +         G +  I +        L+++V+     +        
Sbjct: 94  RLELQLRY-NGVGRVTSSGPVINHGMWQTISVEE--LARNLVIKVNRDAVMKIAVAGDLF 150

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCV 87
              +      + +G          + +     GC+
Sbjct: 151 QPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCM 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	99.86
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.79
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.76
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.73
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	99.7
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.62
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	99.53
d2erfa1	206	Thrombospondin 1 N-terminal domain {Human (Homo sa	98.43
d2slia1	196	Leech intramolecular trans-sialidase, N-terminal d	96.97
d1b09a_	206	C-reactive protein (CRP) {Human (Homo sapiens) [Ta	96.95
d1epwa1	218	Botulinum neurotoxin {Clostridium botulinum, serot	96.45
d3btaa1	207	Botulinum neurotoxin {Clostridium botulinum, serot	95.89
d1saca_	204	Serum amyloid P component (SAP) {Human (Homo sapie	95.79
d1a8da1	247	Tetanus neurotoxin {Clostridium tetani [TaxId: 151	95.43
g2ltn.1	229	Legume lectin {Garden pea (Pisum sativum) [TaxId:	82.8
d1nlsa_	237	Concanavalin A {Jack bean (Canavalia ensiformis) [	82.72
d1gzca_	239	Legume lectin {Cockspur coral tree (Erythrina cris	82.14
d2d3sa1	237	Legume lectin {Winged bean (Psophocarpus tetragono	81.86
d1v6ia_	232	Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3	80.8

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.7e-21  Score=137.06  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=82.0

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCc
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTE   81 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~   81 (114)
                      |+++|++|+++..+.....+++||+||.|.++|+.  +.++|+||+........  +......|+....|||||.+. .+
T Consensus        67 l~~~~~~g~~~~~~~~~~~~vnDg~WH~V~v~~~~--~~~~L~VD~~~~~~~~~--~~~~~~~~~~~~~l~iGG~p~-~~  141 (177)
T d2r1da1          67 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GNATLQVDSWPVIERYP--AGRQLTIFNSQATIIIGGKEQ-GQ  141 (177)
T ss_dssp             EEEEEESSSCEEEEECCSSCCCSSSCEEEEEEEET--TEEEEEETTSCCEEECC--SSCCCCCBCSEEEEEESSTTT-TC
T ss_pred             EEEEEcCCCceEEEEeCCceecCCCEEEEEEEEEC--CEEEEEECCeeeEEEec--ccCccccccccceEEEccCCC-CC
Confidence            78999999877666555679999999999999998  99999999987766541  223445688899999999875 67


Q ss_pred             cceeeeceeEEcChhhhhhhccC
Q psy13333         82 GFIGCVSRVEFDDIYPLKLLFQE  104 (114)
Q Consensus        82 GF~GCls~v~~N~i~plk~a~~~  104 (114)
                      ||.|||++|++|++.+|+.|.+.
T Consensus       142 ~F~GCi~~v~~Ng~~~l~la~~~  164 (177)
T d2r1da1         142 PFQGQLSGLYYNGLKVLNMAAEN  164 (177)
T ss_dssp             CCCEEEEEEEETTBCHHHHHHTT
T ss_pred             CCEEEEEEEEECCEEHHHHHhcc
Confidence            89999999999999999988863

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.79  E-value=5.6e-19  Score=127.19  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC----
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE----   77 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~----   77 (114)
                      |+++|++|++..++++. .+++||+||+|.|+|+.  +.+.|+||+........   +.....++....|||||.+    
T Consensus        81 l~~~~~~g~~~~~~~~~-~~v~dg~wh~V~i~r~~--~~~~l~VD~~~~~~~~~---~~~~~~l~~~~~lyiGG~p~~~~  154 (195)
T d1pz7a_          81 VQMMYDLGSKPVVLRST-VPINTNHWTHIKAYRVQ--REGSLQVGNEAPITGSS---PLGATQLDTDGALWLGGMERLSV  154 (195)
T ss_dssp             EEEEEESSSCCEEEEEE-EECCSSSCEEEEEEEET--TEEEEEETTSCCEEEEC---CSSCCCEEECCEEEESSCSCCST
T ss_pred             EEEEEEcCCCCEEEeCC-ceecCCCEEEEEEEEcC--cEEEEEEeccceeeeeC---CCCceeeecCCceEEcccccccc
Confidence            78999999988777653 57999999999999998  99999999987777662   3556678889999999964    


Q ss_pred             ------ccCccceeeeceeEEcChhh--hhhhccC
Q psy13333         78 ------SMTEGFIGCVSRVEFDDIYP--LKLLFQE  104 (114)
Q Consensus        78 ------~~~~GF~GCls~v~~N~i~p--lk~a~~~  104 (114)
                            ....||.|||++|++|+...  .+.|+..
T Consensus       155 ~~~~~~~~~~~F~GCI~~l~in~~~l~l~~~~~~~  189 (195)
T d1pz7a_         155 AHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNN  189 (195)
T ss_dssp             TTTSCGGGGSBCEEEEEEEEETTEECCTTTSCSSC
T ss_pred             cccccccCcCCCEEEEEEEEECCEECCCchHhhcC
Confidence                  12679999999999999642  3666554

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.6e-18  Score=124.21  Aligned_cols=94  Identities=18%  Similarity=0.309  Sum_probs=74.9

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES---   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~---   78 (114)
                      |+++|++|+++.++.+ ..+++||+||+|.++|..  +.++|+||+.......    +.....++....|||||.+.   
T Consensus        76 l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~v~~~~--~~~~l~VD~~~~~~~~----~~~~~~l~~~~~lyiGG~p~~~~  148 (189)
T d1dyka1          76 PYFSYDLGSGDTSTMI-PTKINDGQWHKIKIVRVK--QEGILYVDDASSQTIS----PKKADILDVVGILYVGGLPINYT  148 (189)
T ss_dssp             EEEEEESSSCEEEEEC-CSCCCSSSCEEEEEEEET--TEEEEEETTEEEEEEC----STTCCCCCCCSEEEESSCCTTCC
T ss_pred             EEEEEECCCccEEecC-CcEeeCCCEEEEEEEEcc--cEEEEEECCcceeeEc----cCcccccccccceEEeccccccc
Confidence            7899999998877765 457999999999999998  9999999997544432    24556688889999999641   


Q ss_pred             ------cCccceeeeceeEEcChh-hhhhhc
Q psy13333         79 ------MTEGFIGCVSRVEFDDIY-PLKLLF  102 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~-plk~a~  102 (114)
                            ...||.|||++|++|+.. +|..+.
T Consensus       149 ~~~~~~~~~~F~GCi~~v~in~~~~~L~~~~  179 (189)
T d1dyka1         149 TRRIGPVTYSLDGCVRNLHMEQAPVDLDQPT  179 (189)
T ss_dssp             CCSSCSCCSBCSEEEEEEEESSSCCCTTSCS
T ss_pred             ccccCcCCCCcEEEEeEEEECCEEecCCCcc
Confidence                  257999999999999974 454443

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=9.6e-18  Score=119.39  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=70.6

Q ss_pred             eEEEEEcCCeeEEEEe--cC-ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc
Q psy13333          2 LRVVFDFGFERQELIF--PN-KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES   78 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~--~~-~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~   78 (114)
                      |+++|++|+++.....  .. ..++||+||.|.|+|..  +.+.|+||+.......   +.+....++....|||||.+.
T Consensus        61 l~~~~~~g~~~~~~~~~~~~~~~l~Dg~WH~V~i~~~~--~~~~l~vD~~~~~~~~---~~~~~~~~~~~~~lyiGG~p~  135 (185)
T d1dyka2          61 LMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIK--NRLELVVDGNQVDAQS---PNSASTSADTNDPVFVGGFPG  135 (185)
T ss_dssp             EEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEET--TEEEEEETTEEEEEEC---CCTTCCCBCCCBCCEESCCCT
T ss_pred             EEEEEECCCCeEEEEEEccCCceecCCCEEEEEEEEcC--CEEEEEEeecceeEEe---CCCCcceeecCCCEEEeCccc
Confidence            7899999998744322  22 48999999999999999  9999999986655543   234556678888999999742


Q ss_pred             --------cCccceeeeceeEEcChh
Q psy13333         79 --------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 --------~~~GF~GCls~v~~N~i~   96 (114)
                              ...||.|||++|++|+..
T Consensus       136 ~~~~~~~~~~~~F~GCi~~v~in~~~  161 (185)
T d1dyka2         136 GLNQFGLTTNIRFRGCIRSLKLTKGT  161 (185)
T ss_dssp             TCCCTTCSCCCCCEEEEEEEEEECTT
T ss_pred             cccccCccCCCCcEEEeeEEEECCcc
Confidence                    246999999999999864

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.1e-17  Score=114.43  Aligned_cols=86  Identities=14%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc--
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--   78 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--   78 (114)
                      .|+++|++|.++.++.+ ..+++||+||.|.|+|+.  +++.|+||+......       ....++....|||||...  
T Consensus        63 ~l~~~~~~g~~~~~~~s-~~~~~dg~WH~V~i~~~~--~~~~L~VD~~~~~~~-------~~~~~~~~~~lyiGG~p~~~  132 (170)
T d1d2sa_          63 RPEIQLHNHWAQLTVGA-GPRLDDGRWHQVEVKMEG--DSVLLEVDGEEVLRL-------RQVSGHPIMRIALGGLLFPA  132 (170)
T ss_dssp             EEEEEEESSSCEEEEEC-SCCCCSSSCEEEEEEEET--TEEEEEETTEEEEEE-------TTCCCCCEEEEEESSCSSCG
T ss_pred             EEEEEEeCCCcceEEec-ccccCCCceEEEEEEEEC--CEEEEEECCeeeEee-------ecCCCccCCeEEEccccCcc
Confidence            37899999998877764 468999999999999999  999999998754332       223356667899999742  


Q ss_pred             ------cCccceeeeceeEEcChh
Q psy13333         79 ------MTEGFIGCVSRVEFDDIY   96 (114)
Q Consensus        79 ------~~~GF~GCls~v~~N~i~   96 (114)
                            ...||.|||+++.+|+..
T Consensus       133 ~~~~~~~~~~F~GCir~~~~~~~~  156 (170)
T d1d2sa_         133 SNLRLPLVPALDGCLRRDSWLDKQ  156 (170)
T ss_dssp             GGSSSCCCCCCCEEEEEEEESCGG
T ss_pred             ccccCcCCCCeEEEECcCEeCCeE
Confidence                  257999999999999876

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.4e-16  Score=109.21  Aligned_cols=86  Identities=9%  Similarity=0.106  Sum_probs=65.9

Q ss_pred             CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcc---eeeceeeEEEccCC
Q psy13333          1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADA---QFNNIQYMYIGRNE   77 (114)
Q Consensus         1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~---~ln~~~~L~lGg~~   77 (114)
                      .|+++|++|.++.++.+ ...++||+||.|.|+|+.  +.+.|+||.........  + +...   .++....|||||..
T Consensus        94 ~l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~v~r~~--~~~~l~VD~~~~~~~~~--~-~~~~~~~~~~~~~~lyiGG~p  167 (191)
T d1h30a1          94 RLELQLRYNGVGRVTSS-GPVINHGMWQTISVEELA--RNLVIKVNRDAVMKIAV--A-GDLFQPERGLYHLNLTVGGIP  167 (191)
T ss_dssp             EEEEEEEETTEEEEEEE-EEECCSSCCEEEEEEECS--SEEEEEETTEEEEEEEC--C-SCSSEEETTEEECEEEESSCS
T ss_pred             EEEEEEEcCCCcEEecC-CccccCCCEEEEEEEEeC--CEEEEEECCcceEEEEc--c-CccccccccccCceEEEEeec
Confidence            37899999998877765 357999999999999998  99999999977666552  1 2222   33556789999974


Q ss_pred             c--------cCccceeeeceeEE
Q psy13333         78 S--------MTEGFIGCVSRVEF   92 (114)
Q Consensus        78 ~--------~~~GF~GCls~v~~   92 (114)
                      .        ..+||.|||++..|
T Consensus       168 ~~~~~~~~~~~~~F~GCir~~n~  190 (191)
T d1h30a1         168 FHEKDLVQPINPRLDGCMRSWNW  190 (191)
T ss_dssp             SCGGGSSSCCCCCCCEEEEEEEE
T ss_pred             CccccccccCCCCCEEeecccCc
Confidence            1        25699999998543

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.7e-15  Score=106.45  Aligned_cols=78  Identities=14%  Similarity=0.208  Sum_probs=57.6

Q ss_pred             CccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCC--------cceeeceeeEEEccCCc-------cCccc
Q psy13333         19 NKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSA--------DAQFNNIQYMYIGRNES-------MTEGF   83 (114)
Q Consensus        19 ~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~--------~~~ln~~~~L~lGg~~~-------~~~GF   83 (114)
                      ..+++||+||.|+|+|..  +.++|+||+.......   ++..        ...++....|||||.+.       ...||
T Consensus       106 ~~~lnDg~WH~V~v~~~~--~~~~L~VD~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lyvGG~P~~~~~~~~~~~~F  180 (218)
T d1h30a2         106 EIKVCDGQEHVVTVSLRD--GEATLEVDGTRGQSEV---SAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAFY  180 (218)
T ss_dssp             ECCTTSSCCEEEEEEEET--TEEEEEETTEECEESS---CHHHHHHHHHHHHHHHTSCCEEEESCCCSCCTTSSSCCSBC
T ss_pred             ccccCCCCeEEEEEEEEC--CEEEEEEecccceeee---ccccccccccccceecccCceeeccCCCCccccccccCCCe
Confidence            347999999999999998  9999999986655442   1111        11245667899999742       25799


Q ss_pred             eeeeceeEEcChh-hhhhhc
Q psy13333         84 IGCVSRVEFDDIY-PLKLLF  102 (114)
Q Consensus        84 ~GCls~v~~N~i~-plk~a~  102 (114)
                      .||| ++++|+.. .|..|.
T Consensus       181 ~GCi-~l~in~~~~dl~~~~  199 (218)
T d1h30a2         181 RGCM-TLEVNRRLLDLDEAA  199 (218)
T ss_dssp             CEEE-EEEETTEECCGGGSS
T ss_pred             eeeE-EEEECCEEeccchhh
Confidence            9999 89999964 455554

>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.3e-06  Score=61.28  Aligned_cols=95  Identities=12%  Similarity=0.211  Sum_probs=64.9

Q ss_pred             eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc----ceeeceeeEEEccCC
Q psy13333          2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD----AQFNNIQYMYIGRNE   77 (114)
Q Consensus         2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~----~~ln~~~~L~lGg~~   77 (114)
                      +.+.|.-+.....+.+...++.||+||+|-+....  ..+.|-||.....+..+  ..+..    ..+.....+++|+-.
T Consensus       101 l~~~~~~~~~~~~~~~~~~~l~d~~Whhva~~~~~--~~v~lyvD~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~  176 (206)
T d2erfa1         101 LDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQE--DRAQLYIDCEKMENAEL--DVPIQSVFTRDLASIARLRIAKGG  176 (206)
T ss_dssp             EEEEEEETTEEEEEEESSCCCCSSSEEEEEEEEET--TEEEEEETTTEEEEEEC--SSCGGGTCCTTHHHHEEEEESCCT
T ss_pred             EEEEEeCCCceEEEEeccccccCCCEEEEEEEEeC--CEEEEEECCEEEEeEEc--cCCcccccCCccceeEEEEEccCC
Confidence            55677766666666555568999999999999998  99999999977665542  11111    123445678888643


Q ss_pred             ccCccceeeeceeEE-cChhhhhhhc
Q psy13333         78 SMTEGFIGCVSRVEF-DDIYPLKLLF  102 (114)
Q Consensus        78 ~~~~GF~GCls~v~~-N~i~plk~a~  102 (114)
                       ....|.|||.+|+| =|. .|-+.+
T Consensus       177 -~~~~F~G~i~dvrli~g~-~l~~~~  200 (206)
T d2erfa1         177 -VNDNFQGVLQNVRFVFGT-TPEDIL  200 (206)
T ss_dssp             -TTCBCCEEEEEEEEECSC-CHHHHH
T ss_pred             -CCCCCEEEeEEEEEECCC-cHHHHH
Confidence             35679999999974 332 444443

>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Leech intramolecular trans-sialidase, N-terminal domain
domain: Leech intramolecular trans-sialidase, N-terminal domain
species: North american leech (Macrobdella decora) [TaxId: 6405]

Probab=96.97  E-value=0.00077  Score=45.50  Aligned_cols=70  Identities=6%  Similarity=0.096  Sum_probs=48.0

Q ss_pred             cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCC-CcceeeceeeEEEccCCcc---CccceeeeceeEE
Q psy13333         21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS-ADAQFNNIQYMYIGRNESM---TEGFIGCVSRVEF   92 (114)
Q Consensus        21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~-~~~~ln~~~~L~lGg~~~~---~~GF~GCls~v~~   92 (114)
                      .++||+||+|-+.++...+.+.|-||.....+...  +.. ..........+++|+....   ..-|.|+|..|++
T Consensus       104 ~~~~~~W~hva~t~d~~~~~~~lYvnG~~~~~~~~--~~~~~~~~~~~~~~~~ig~~~~~~~~~~~f~G~Id~v~i  177 (196)
T d2slia1         104 YKGERVFNTVALKADAANKQCRLFANGELLATLDK--DAFKFISDITGVDNVTLGGTKRQGKIAYPFGGTIGDIKV  177 (196)
T ss_dssp             ETTEECCEEEEEEEETTTTEEEEEETTEEEEEEEC--SSCCCGGGSTTCCEEEESSEEETTEEESCCCEEEEEEEE
T ss_pred             eecCCcEEEEEEEEECCCCEEEEEECCeEEEEEec--CCCccceeeeecceeeeeccccCCCCCccceEEeEEEEE
Confidence            57899999999999875567899999976555542  111 1112233457889875422   4559999999965

>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0018  Score=44.26  Aligned_cols=72  Identities=10%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~   92 (114)
                      .++.+++||+|-++.+..+..+.|-||.........    ...........++||+...       ....|.|+|+.+++
T Consensus        86 ~~~~~~~W~Hvavt~d~~~g~~~lYinG~~~~~~~~----~~~~~~~~~~~~~iG~~~~~~g~~~~~~~~F~G~i~~~~i  161 (206)
T d1b09a_          86 VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSL----KKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNM  161 (206)
T ss_dssp             CCCCCCSCEEEEEEEETTTCEEEEEETTEECCCEEC----CTTCCBCSSCEEEESSCCSBTTBCCCGGGCCCEEEEEEEE
T ss_pred             CcccCCcEEEEEEEEeccCCeEEEEECCeEEeeecc----cCCceeccCCcEEeccccccccccccCCCceeeEEeeEEE
Confidence            468899999999999874357899999866555441    3334456677899997421       24569999999965


Q ss_pred             -cCh
Q psy13333         93 -DDI   95 (114)
Q Consensus        93 -N~i   95 (114)
                       |-.
T Consensus       162 ~~ra  165 (206)
T d1b09a_         162 WDFV  165 (206)
T ss_dssp             ESSC
T ss_pred             Eccc
Confidence             443

>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]

Probab=96.45  E-value=0.0054  Score=41.00  Aligned_cols=67  Identities=3%  Similarity=-0.072  Sum_probs=49.5

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~GF~GCls~v~~   92 (114)
                      .++.+++||+|-++++.  ..+.+=||.....+..  .  +..........+.+|.......-|-|.|..|++
T Consensus       133 ~~~~~~~W~hi~~t~d~--~~~~iYvNG~l~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~g~id~v~i  199 (218)
T d1epwa1         133 ISEYINRWFFVTITNNL--NNAKIYINGKLESNTD--I--KDIREVIANGEIIFKLDGDIDRTQFIWMKYFSI  199 (218)
T ss_dssp             SCSSTTSCEEEEEEECS--SEEEEEETTEEEEEEE--C--SSCCCCCCCSEEEEEEEESCCTTCCEEEEEEEE
T ss_pred             ccccCCcEEEEEEEECC--CEEEEEECCEEEeeee--c--cCcccccCCCcEEEEEecCCCCCCceEeEEEEE
Confidence            36789999999999998  8999999997655554  1  333345556678888654445568899988865

>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]

Probab=95.89  E-value=0.018  Score=38.59  Aligned_cols=68  Identities=4%  Similarity=-0.065  Sum_probs=49.9

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~GF~GCls~v~~   92 (114)
                      ..+.+++||+|-++++.. ..+.|-||.....+..  +  +....++....+.+|.......-|.|=|.++++
T Consensus       135 ~~~~~~~W~Hva~t~d~~-~~~~lYiNG~lv~s~~--~--s~~~~~~~~~~~~~g~~~~~~~~~~~~id~~ri  202 (207)
T d3btaa1         135 ISDYINRWIFVTITNNRL-NNSKIYINGRLIDQKP--I--SNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNL  202 (207)
T ss_dssp             SCSSTTSEEEEEEEECTT-SEEEEEETTEEEEEEE--C--TTCCCCCCCSEEEEEEESCCCTTCEEEEEEEEE
T ss_pred             eeecCCcEEEEEEEEcCC-CcEEEEECCEEEEeEE--e--cCccccccCCcEEEEECCCCCCcceEEEeEEEE
Confidence            478999999999999863 4789999997766665  2  344457777788888765444455566888764

>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: Serum amyloid P component (SAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.075  Score=35.85  Aligned_cols=69  Identities=7%  Similarity=0.067  Sum_probs=49.9

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~   92 (114)
                      ..+.+++||+|-++++.....+.+-||.........    ...........|.||....       ....|.|=|+.+++
T Consensus        84 ~~~~~~~W~Hv~~t~d~~~g~~~~YiNG~~~~~~~~----~~~~~~~~~~~~~iG~~~~~~gg~~~~~~~f~G~i~~~~i  159 (204)
T d1saca_          84 VIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGL----RQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYM  159 (204)
T ss_dssp             CCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEEC----CTTCCBCSSCEEEESSCCSSSSCCCCGGGCCCEEEEEEEE
T ss_pred             ccccCCceEEEEEEEecCCCcEEEEECCEEEeeecc----cceeeeecccceeccccccccCCCCCcccceeEEecceEE
Confidence            478999999999999974457999999865444431    2333456667899997531       14569999999965

>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]

Probab=95.43  E-value=0.033  Score=38.25  Aligned_cols=68  Identities=4%  Similarity=0.029  Sum_probs=49.0

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCccceeeeceeEE
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF   92 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~GF~GCls~v~~   92 (114)
                      ..+.+++||+|-++++.+ +++.+-||........  .  ...........+.+|........|-|=|..|++
T Consensus       161 ~~~~~~~W~hia~t~d~~-~~~~lYinG~~~~~~~--~--~~~~~~~~~~~~~ig~~~~~~~~~~G~Idd~~i  228 (247)
T d1a8da1         161 NAYLANKWVFITITNDRL-SSANLYINGVLMGSAE--I--TGLGAIREDNNITLKLDRCNNNNQYVSIDKFRI  228 (247)
T ss_dssp             SCSSSSSCEEEEEEECTT-SEEEEEETTEEEEEEE--C--TTCCCCCCCSEEEEEEESCCCTTCEEEEEEEEE
T ss_pred             ccccCCcEEEEEEEEeCC-CcEEEEECCEEEEeEE--e--ccccccCCCCeEEEEEcCCCCCCceEEeeEEEE
Confidence            368899999999999862 6899999997655544  1  222234455567777665557779999999875

>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Concanavalin A
species: Jack bean (Canavalia ensiformis) [TaxId: 3823]

Probab=82.72  E-value=0.99  Score=32.06  Aligned_cols=30  Identities=13%  Similarity=0.005  Sum_probs=24.3

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCC
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYE   49 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~   49 (114)
                      .+|.||+||.|.|+-+...+.+.+.++...
T Consensus        40 ~~l~~G~~~~v~I~Yd~~~~~L~V~~~~~~   69 (237)
T d1nlsa_          40 WNMQNGKVGTAHIIYNSVDKRLSAVVSYPN   69 (237)
T ss_dssp             CCCCTTCEEEEEEEEETTTTEEEEEEECTT
T ss_pred             ccccCCCEEEEEEEEecCCcEEEEEEecCC
Confidence            489999999999999976677777776543

>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]

Probab=82.14  E-value=0.89  Score=31.85  Aligned_cols=29  Identities=14%  Similarity=0.102  Sum_probs=24.2

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCC
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSY   48 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~   48 (114)
                      .+++||+||.|.|.-+.+.+.+.+.++..
T Consensus       158 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~  186 (239)
T d1gzca_         158 FQLDNGQVANVVIKYDAPSKILHVVLVYP  186 (239)
T ss_dssp             CCCCTTCEEEEEEEEETTTTEEEEEEECT
T ss_pred             ccccCCCEEEEEEEEeCCCcEEEEEEecC
Confidence            47999999999999999767777777653

>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]

Probab=81.86  E-value=0.82  Score=32.05  Aligned_cols=28  Identities=14%  Similarity=0.078  Sum_probs=23.2

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECC
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDS   47 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~   47 (114)
                      .+++||+||.|.|+-+...|.+.+.++.
T Consensus       152 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~  179 (237)
T d2d3sa1         152 FTLDNGGIANVVIKYDASTKILHVVLVF  179 (237)
T ss_dssp             CCCCTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred             eeecCCCEEEEEEEEECCCCEEEEEEEc
Confidence            3789999999999999866777777764

>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Peanut (Arachis hypogaea) [TaxId: 3818]

Probab=80.80  E-value=1.2  Score=30.81  Aligned_cols=54  Identities=15%  Similarity=0.030  Sum_probs=34.1

Q ss_pred             ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEcc
Q psy13333         20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR   75 (114)
Q Consensus        20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg   75 (114)
                      .++.||+||.|+|+-+...+.+.+.+|...+....  ++..-+-.-.++...|+|=
T Consensus       153 ~~~~~g~~~~v~I~Yd~~~~~L~V~~~~~~~~~~~--l~~~vdL~~~l~~~vyvGF  206 (232)
T d1v6ia_         153 WNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITT--IAQVVDLKAKLPERVKFGF  206 (232)
T ss_dssp             CCCCTTCEEEEEEEEETTTTEEEEEEECTTSCEEE--EEEECCHHHHSCSEEEEEE
T ss_pred             cccCCCCEEEEEEEEeCCceEEEEEEecCCCCcce--EEEEEchhhccCCcEEEEE
Confidence            36899999999999987667888888864443332  1101121112456778873