Psyllid ID: psy13340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEEccccccccEEEEEEEEccccccEEEEEccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mehipktltpngiidsapkKFAVWGLrekydenptllgefmydsegptlQYFEAKMVADTFDMVELKILsnhgnieytclyrfrvhgnlapspspvhtynrfssanhntlhhmtsskynpv
Flexible Loop (DISEMBL)
mehipktltpngiidsapKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSanhntlhhmtsskynpv
Low Complexity Region (SEG)
MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPV
Disordered region (IsUnstruct)
************IIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA*******************************
Disordered Region (DISOPRED)
**HIPKT********SAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH************************HHMTSSKYN**
Disordered Region (DISEMBL)
MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHH*********
Disordered Region (DISPRO)
*****KTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHT**RF*S*******HMT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
O94901	812	SUN domain-containing pro	no	N/A	0.719	0.107	0.617	5e-25
Q9D666	913	SUN domain-containing pro	no	N/A	0.719	0.095	0.602	1e-23
Q8BJS4	731	SUN domain-containing pro	no	N/A	0.735	0.121	0.532	3e-22
Q9UH99	717	SUN domain-containing pro	no	N/A	0.735	0.124	0.521	1e-21
Q8TAQ9	357	SUN domain-containing pro	no	N/A	0.719	0.243	0.477	2e-17
Q95LV7	261	SUN domain-containing pro	N/A	N/A	0.719	0.333	0.477	2e-17
Q5SS91	320	SUN domain-containing pro	no	N/A	0.719	0.271	0.477	6e-17
Q0II64	360	SUN domain-containing pro	no	N/A	0.719	0.241	0.477	1e-16
Q8TC36	379	SUN domain-containing pro	no	N/A	0.793	0.253	0.391	2e-13
Q9DA32	348	SUN domain-containing pro	no	N/A	0.735	0.255	0.402	2e-13

>sp|O94901|SUN1_HUMAN SUN domain-containing protein 1 OS=Homo sapiens GN=SUN1 PE=1 SV=3

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
           +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct: 720 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 779

Query: 60  T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
           T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct: 780 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 808

Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. Helps to define the distribution of nuclear pore complexes (NPCs).
Homo sapiens (taxid: 9606)

>sp|Q9D666|SUN1_MOUSE SUN domain-containing protein 1 OS=Mus musculus GN=Sun1 PE=1 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           MEHIPKTL+P G I SAPK FAV+GL  +Y E    LG F YD EG +LQ F      D 
Sbjct: 822 MEHIPKTLSPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQ 881

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
            F +VEL++LSN G+ EYTCLYRFRVHG
Sbjct: 882 AFQIVELRVLSNWGHPEYTCLYRFRVHG 909

Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. Helps to define the distribution of nuclear pore complexes (NPCs).

Mus musculus (taxid: 10090)

>sp|Q8BJS4|SUN2_MOUSE SUN domain-containing protein 2 OS=Mus musculus GN=Sun2 PE=1 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 65/92 (70%), Gaps = 3/92 (3%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG F YD +G  +Q  YF+A  +A
Sbjct: 640 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGTFAYDQDGEPIQTFYFQASKMA 699

Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 700 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 730

Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Specifically, Syne2 and Sun2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. May also function on endocytic vesicles as a receptor for Rab5-GDP and participate in the activation of Rab5.

Mus musculus (taxid: 10090)

>sp|Q9UH99|SUN2_HUMAN SUN domain-containing protein 2 OS=Homo sapiens GN=SUN2 PE=1 SV=3

 Score =  102 bits (253), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q  +F+A  +A
Sbjct: 626 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 685

Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 686 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 716

Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Specifically, SYNE2 and SUN2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. May also function on endocytic vesicles as a receptor for RAB5-GDP and participate in the activation of RAB5.

Homo sapiens (taxid: 9606)

>sp|Q8TAQ9|SUN3_HUMAN SUN domain-containing protein 3 OS=Homo sapiens GN=SUN3 PE=2 SV=4

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAK-MVAD 59
           MEHI + ++P+G I SAPK+F+V+G+ +K +     LG+F+Y+  G T+Q FE +  V++
Sbjct: 264 MEHISEKVSPSGNISSAPKEFSVYGITKKCEGEEIFLGQFIYNKTGTTVQTFELQHAVSE 323

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
               V+L I SN G+ +YTCLYRFRVHG
Sbjct: 324 YLLCVKLNIFSNWGHPKYTCLYRFRVHG 351

Homo sapiens (taxid: 9606)

>sp|Q95LV7|SUN3_MACFA SUN domain-containing protein 3 OS=Macaca fascicularis GN=SUN3 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAK-MVAD 59
           MEHI + ++P+G I SAPK+F+V+G+ +K +     LG+F+Y+  G T+Q FE +  V++
Sbjct: 168 MEHISEKVSPSGNISSAPKEFSVYGITKKCEGEEIFLGQFIYNKTGTTVQTFELQHAVSE 227

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
               V+L I SN G+ +YTCLYRFRVHG
Sbjct: 228 YLLCVKLNIFSNWGHPKYTCLYRFRVHG 255

Macaca fascicularis (taxid: 9541)

>sp|Q5SS91|SUN3_MOUSE SUN domain-containing protein 3 OS=Mus musculus GN=Sun3 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVA-D 59
           MEHI + ++P+G I SAPK+F+V+G+ +K +     LG+F+Y+    T+Q FE +  A +
Sbjct: 227 MEHISEKVSPSGNISSAPKEFSVYGVMKKCEGEEIFLGQFIYNKMEATIQTFELQNEASE 286

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
           +   V+L+ILSN G+ +YTCLYRFRVHG
Sbjct: 287 SLLCVKLQILSNWGHPKYTCLYRFRVHG 314

Mus musculus (taxid: 10090)

>sp|Q0II64|SUN3_BOVIN SUN domain-containing protein 3 OS=Bos taurus GN=SUN3 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADT 60
           MEHI + ++P+G I SAPK+F+V+G+ ++ +     LG+F+Y+  G T+Q F  +     
Sbjct: 267 MEHISEKVSPSGNISSAPKEFSVYGVLKQCEGEEIFLGQFVYNKTGTTVQTFALQHEVPE 326

Query: 61  FDM-VELKILSNHGNIEYTCLYRFRVHG 87
           F + V+LKILSN G+  YTCLYRFRVHG
Sbjct: 327 FLLCVKLKILSNWGHPNYTCLYRFRVHG 354

Bos taurus (taxid: 9913)

>sp|Q8TC36|SUN5_HUMAN SUN domain-containing protein 5 OS=Homo sapiens GN=SUN5 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADT 60
           ++HIPKT++ +G +D+APK F ++G+ E   +    LG F +  E     +      A  
Sbjct: 276 LQHIPKTISLSGSLDTAPKDFVIYGM-EGSPKEEVFLGAFQFQPENIIQMFPLQNQPARA 334

Query: 61  FDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVH 97
           F  V++KI SN GN  +TCLYR RVHG++AP     H
Sbjct: 335 FSAVKVKISSNWGNPGFTCLYRVRVHGSVAPPREQPH 371

Homo sapiens (taxid: 9606)

>sp|Q9DA32|SUN5_MOUSE SUN domain-containing protein 5 OS=Mus musculus GN=Sun5 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAK-MVAD 59
           ++HIPKT++ +G +D+APK F ++GL E        LG F +  E   +Q F+ + +   
Sbjct: 249 LQHIPKTISLSGSLDTAPKDFVIYGL-ESLPREEVFLGAFQFQPEN-IIQTFQLQNLPPR 306

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91
           +F  V++KI SN GN  +TC+YR RVHG++ P
Sbjct: 307 SFAAVKVKISSNWGNPRFTCMYRVRVHGSVTP 338

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
390361391	1269	PREDICTED: uncharacterized protein LOC58	0.735	0.070	0.6	6e-25
301791810	801	PREDICTED: LOW QUALITY PROTEIN: SUN doma	0.719	0.108	0.636	7e-25
281351387	832	hypothetical protein PANDA_021492 [Ailur	0.719	0.104	0.636	7e-25
195120956	573	GI19306 [Drosophila mojavensis] gi|19391	0.760	0.160	0.531	2e-24
326928877	901	PREDICTED: SUN domain-containing protein	0.743	0.099	0.577	3e-24
363739323	906	PREDICTED: SUN domain-containing protein	0.743	0.099	0.577	4e-24
348568394	757	PREDICTED: SUN domain-containing protein	0.743	0.118	0.615	5e-24
395514702	858	PREDICTED: SUN domain-containing protein	0.743	0.104	0.604	9e-24
355722661	610	unc-84-like protein A [Mustela putorius	0.719	0.142	0.613	9e-24
402862688	702	PREDICTED: SUN domain-containing protein	0.719	0.123	0.595	1e-23

>gi|390361391|ref|XP_791258.3| PREDICTED: uncharacterized protein LOC586381 [Strongylocentrotus purpuratus]

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 65/90 (72%), Gaps = 1/90 (1%)

Query: 1    MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAK-MVAD 59
            +EHIPK L P GIIDSAPK F VWGLR++YD +  LLG ++YD +   LQ+F  +   + 
Sbjct: 1178 LEHIPKALDPAGIIDSAPKNFTVWGLRDEYDHDGYLLGSYVYDVDSSPLQFFPVQNQDSG 1237

Query: 60   TFDMVELKILSNHGNIEYTCLYRFRVHGNL 89
                VELKI SNHGN+EYTCLYRFRVHG L
Sbjct: 1238 PIQFVELKIGSNHGNMEYTCLYRFRVHGVL 1267

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|301791810|ref|XP_002930873.1| PREDICTED: LOW QUALITY PROTEIN: SUN domain-containing protein 1-like [Ailuropoda melanoleuca]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+FMYD EG +LQ F      D 
Sbjct: 710 LEHIPKTLSPTGNITSAPKDFAVYGLENEYQEEGQLLGQFMYDQEGESLQMFHVLERPDG 769

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
           TF +VEL+ILSN G+ EYTCLYRFRVHG
Sbjct: 770 TFQIVELRILSNWGHPEYTCLYRFRVHG 797

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281351387|gb|EFB26971.1| hypothetical protein PANDA_021492 [Ailuropoda melanoleuca]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+FMYD EG +LQ F      D 
Sbjct: 741 LEHIPKTLSPTGNITSAPKDFAVYGLENEYQEEGQLLGQFMYDQEGESLQMFHVLERPDG 800

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
           TF +VEL+ILSN G+ EYTCLYRFRVHG
Sbjct: 801 TFQIVELRILSNWGHPEYTCLYRFRVHG 828

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195120956|ref|XP_002004987.1| GI19306 [Drosophila mojavensis] gi|193910055|gb|EDW08922.1| GI19306 [Drosophila mojavensis]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKM--VA 58
           +EHIPK+L+P G IDSAP+ F VWGL  + D++P L GE+ Y   G +LQ+F  +   + 
Sbjct: 479 LEHIPKSLSPTGRIDSAPRNFTVWGLEHEKDQDPVLFGEYEYQDNGASLQFFPVQNMDIK 538

Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92
             F++VEL+I SNHG  +YTCLYRFRVHG   PS
Sbjct: 539 RPFEIVELRIESNHGQPDYTCLYRFRVHGKPPPS 572

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326928877|ref|XP_003210599.1| PREDICTED: SUN domain-containing protein 1-like [Meleagris gallopavo]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADT 60
           +EHIPKTL+P+G I SAP+KF+V+GL ++Y E  T LG+++YD EG  LQ F  +   + 
Sbjct: 811 LEHIPKTLSPSGNITSAPRKFSVYGLDDEYQEEGTFLGQYVYDQEGEPLQMFTVEKSENV 870

Query: 61  FDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
           F +VEL+ILSN G+ EYTCLYRFRVHG  A
Sbjct: 871 FQIVELRILSNWGHAEYTCLYRFRVHGKPA 900

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363739323|ref|XP_414757.3| PREDICTED: SUN domain-containing protein 1 [Gallus gallus]

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADT 60
           +EHIPKTL+P+G I SAP+KF+V+GL ++Y E  T LG+++YD EG  LQ F  +   + 
Sbjct: 816 LEHIPKTLSPSGNITSAPRKFSVYGLDDEYQEEGTFLGQYVYDQEGEPLQMFTVEKSENV 875

Query: 61  FDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
           F +VEL+ILSN G+ EYTCLYRFRVHG  A
Sbjct: 876 FQIVELRILSNWGHAEYTCLYRFRVHGKPA 905

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348568394|ref|XP_003469983.1| PREDICTED: SUN domain-containing protein 1-like [Cavia porcellus]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           MEHIPKTL+P G I SAPK FAV+GL  +Y E    LG+F YD EG +LQ F A  + D 
Sbjct: 666 MEHIPKTLSPMGNISSAPKDFAVYGLENEYQEEGQPLGQFTYDQEGESLQMFPALEIPDR 725

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            F +VEL+ILSN G++EYTCLYRFRVHG  A
Sbjct: 726 AFQIVELRILSNWGHLEYTCLYRFRVHGQPA 756

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395514702|ref|XP_003761552.1| PREDICTED: SUN domain-containing protein 1 [Sarcophilus harrisii]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
           MEHIPKTL+P G I SAPK F+V+GL  +Y E   LLG+F+YD EG +LQ F+A K    
Sbjct: 767 MEHIPKTLSPTGNITSAPKDFSVYGLDNEYQEEGMLLGQFVYDQEGESLQIFQAMKSPGK 826

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            F +VEL+I SN G+ EYTCLYRFRVHG L 
Sbjct: 827 AFQIVELRIFSNWGHPEYTCLYRFRVHGELT 857

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355722661|gb|AES07645.1| unc-84-like protein A [Mustela putorius furo]

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F+YD EG +LQ F      D 
Sbjct: 522 LEHIPKTLSPTGNITSAPKDFAVYGLENEYQEEGQLLGQFVYDQEGESLQMFHVLKRPDG 581

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHG 87
            F +VEL+ILSN G+ EYTCLYRFRVHG
Sbjct: 582 AFQIVELRILSNWGHPEYTCLYRFRVHG 609

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402862688|ref|XP_003895678.1| PREDICTED: SUN domain-containing protein 1 isoform 2 [Papio anubis]

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A    D 
Sbjct: 610 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKTPDD 669

Query: 60  -TFDMVELKILSNHGNIEYTCLYRFRVHG 87
             F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct: 670 RVFQIVELRIFSNWGHPEYTCLYRFRVHG 698

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
UNIPROTKB|E1BQ86	865	E1BQ86 "Uncharacterized protei	0.743	0.104	0.577	1.8e-23
UNIPROTKB|E7EP45	583	SUN1 "SUN domain-containing pr	0.719	0.149	0.617	4.3e-23
UNIPROTKB|H0Y6N5	634	SUN1 "SUN domain-containing pr	0.719	0.137	0.617	5.3e-23
UNIPROTKB|H0Y742	710	SUN1 "SUN domain-containing pr	0.719	0.122	0.617	6.9e-23
UNIPROTKB|O94901	812	SUN1 "SUN domain-containing pr	0.719	0.107	0.617	9e-23
UNIPROTKB|E9PHI4	822	SUN1 "SUN domain-containing pr	0.719	0.105	0.617	9.2e-23
UNIPROTKB|A4D2Q0	974	UNC84A "Unc-84 homolog A (C. e	0.719	0.089	0.617	1.2e-22
UNIPROTKB|E2R4M4	823	SUN1 "Uncharacterized protein"	0.719	0.105	0.602	2.5e-22
UNIPROTKB|E2R8J5	923	SUN1 "Uncharacterized protein"	0.719	0.094	0.602	3e-22
MGI|MGI:1924303	913	Sun1 "Sad1 and UNC84 domain co	0.719	0.095	0.602	1.7e-21

UNIPROTKB|E1BQ86 E1BQ86 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADT 60
             +EHIPKTL+P+G I SAP+KF+V+GL ++Y E  T LG+++YD EG  LQ F  +   + 
Sbjct:   775 LEHIPKTLSPSGNITSAPRKFSVYGLDDEYQEEGTFLGQYVYDQEGEPLQMFTVEKSENV 834

Query:    61 FDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
             F +VEL+ILSN G+ EYTCLYRFRVHG  A
Sbjct:   835 FQIVELRILSNWGHAEYTCLYRFRVHGKPA 864

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0005521 "lamin binding" evidence=IEA

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

UNIPROTKB|E7EP45 SUN1 "SUN domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 4.3e-23, P = 4.3e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   491 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 550

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   551 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 579

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|H0Y6N5 SUN1 "SUN domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 5.3e-23, P = 5.3e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   542 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 601

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   602 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 630

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|H0Y742 SUN1 "SUN domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   618 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 677

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   678 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 706

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|O94901 SUN1 "SUN domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 9.0e-23, P = 9.0e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   720 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 779

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   780 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 808

GO:0016021 "integral to membrane" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0034993 "SUN-KASH complex" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0090292 "nuclear matrix anchoring at nuclear membrane" evidence=IDA

GO:0090286 "cytoskeletal anchoring at nuclear membrane" evidence=IDA

GO:0006998 "nuclear envelope organization" evidence=IGI

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E9PHI4 SUN1 "SUN domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   730 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 789

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   790 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 818

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A4D2Q0 UNC84A "Unc-84 homolog A (C. elegans)" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 55/89 (61%), Positives = 66/89 (74%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL  +Y E   LLG+F YD +G +LQ F+A K   D
Sbjct:   882 LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALKRPDD 941

Query:    60 T-FDMVELKILSNHGNIEYTCLYRFRVHG 87
             T F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   942 TAFQIVELRIFSNWGHPEYTCLYRFRVHG 970

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2R4M4 SUN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 53/88 (60%), Positives = 63/88 (71%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL ++Y E   LLG+F YD EG +LQ F   K    
Sbjct:   732 LEHIPKTLSPTGNITSAPKDFAVYGLEDEYQEEGQLLGQFTYDQEGESLQMFHVPKRPEG 791

Query:    60 TFDMVELKILSNHGNIEYTCLYRFRVHG 87
              F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   792 AFQIVELRIFSNWGHPEYTCLYRFRVHG 819

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E2R8J5 SUN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 53/88 (60%), Positives = 63/88 (71%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEA-KMVAD 59
             +EHIPKTL+P G I SAPK FAV+GL ++Y E   LLG+F YD EG +LQ F   K    
Sbjct:   832 LEHIPKTLSPTGNITSAPKDFAVYGLEDEYQEEGQLLGQFTYDQEGESLQMFHVPKRPEG 891

Query:    60 TFDMVELKILSNHGNIEYTCLYRFRVHG 87
              F +VEL+I SN G+ EYTCLYRFRVHG
Sbjct:   892 AFQIVELRIFSNWGHPEYTCLYRFRVHG 919

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1924303 Sun1 "Sad1 and UNC84 domain containing 1" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 53/88 (60%), Positives = 61/88 (69%)

Query:     1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
             MEHIPKTL+P G I SAPK FAV+GL  +Y E    LG F YD EG +LQ F      D 
Sbjct:   822 MEHIPKTLSPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQ 881

Query:    60 TFDMVELKILSNHGNIEYTCLYRFRVHG 87
              F +VEL++LSN G+ EYTCLYRFRVHG
Sbjct:   882 AFQIVELRVLSNWGHPEYTCLYRFRVHG 909

GO:0002080 "acrosomal membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005521 "lamin binding" evidence=IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=ISO;IDA

GO:0005639 "integral to nuclear inner membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006998 "nuclear envelope organization" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0034993 "SUN-KASH complex" evidence=ISO

GO:0090286 "cytoskeletal anchoring at nuclear membrane" evidence=ISO

GO:0090292 "nuclear matrix anchoring at nuclear membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
pfam07738	135	pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal	1e-25

>gnl|CDD|203750 pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal

 Score = 93.1 bits (232), Expect = 1e-25
 Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD- 59
           +EH+ K++ P     SAPK F V G     D    LLG+F YD +G T+Q F+ +   D 
Sbjct: 49  LEHVEKSVAP---YSSAPKDFEVSGSDRYPDTKWVLLGKFTYDLDGKTIQTFQLENPPDI 105

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGN 88
               V+L+ILSN+GN  YTCLYRFRVHG 
Sbjct: 106 WVKYVKLRILSNYGNEHYTCLYRFRVHGT 134

The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG2687|consensus	414		100.0
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	99.97
KOG1396|consensus	530		98.06
cd00057	143	FA58C Substituted updates: Jan 31, 2002	97.05
PF06201	152	PITH: PITH domain; InterPro: IPR010400 The full-le	95.11
PF03256	193	APC10: Anaphase-promoting complex, subunit 10 (APC	86.43
PF00754	129	F5_F8_type_C: F5/8 type C domain; InterPro: IPR000	83.83
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	82.32

>KOG2687|consensus

Probab=100.00  E-value=7.7e-35  Score=246.38  Aligned_cols=92  Identities=46%  Similarity=0.863  Sum_probs=87.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340          1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC   79 (121)
Q Consensus         1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC   79 (121)
                      |||||++++|+++++||||||.|||+..++.++.++||+|+||.++.++|||.|+.. ..+|+.|+|+|+||||++.|||
T Consensus       321 leHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD~d~~~~QtF~~q~~~~~~~~~V~l~~~SN~G~p~fTC  400 (414)
T KOG2687|consen  321 LEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYDLDGSPIQTFSLQHDTSAPFKTVELRFNSNHGHPKFTC  400 (414)
T ss_pred             eecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEECCCCCcceEEeccCCCccccceEEEEEecCCCCCCceE
Confidence            699999999999999999999999999987788899999999999999999999998 6789999999999999999999


Q ss_pred             EEEEEEeceeCCC
Q psy13340         80 LYRFRVHGNLAPS   92 (121)
Q Consensus        80 lYR~RVHG~~~~~   92 (121)
                      ||||||||++++.
T Consensus       401 iYR~RVhG~~~~~  413 (414)
T KOG2687|consen  401 IYRFRVHGRPVDP  413 (414)
T ss_pred             EEEEEEcCccCCC
Confidence            9999999997764

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=99.97  E-value=5.2e-32  Score=195.73  Aligned_cols=86  Identities=52%  Similarity=0.915  Sum_probs=63.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340          1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC   79 (121)
Q Consensus         1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC   79 (121)
                      |||+++++++   ++||||+|+|||+.+..+..+++||+|+|+.++..+|+|+|+.. ..+++.|+|+|+||||+++|||
T Consensus        49 i~h~~~~~~~---~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytc  125 (135)
T PF07738_consen   49 IEHVEKSIAP---FSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTC  125 (135)
T ss_dssp             EE---GGGSG----TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEE
T ss_pred             EEEeccccCC---cCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEE
Confidence            6899999997   89999999999999998777999999999999999999999997 3589999999999999999999


Q ss_pred             EEEEEEecee
Q psy13340         80 LYRFRVHGNL   89 (121)
Q Consensus        80 lYR~RVHG~~   89 (121)
                      ||||||||+.
T Consensus       126 lyr~rVhG~~  135 (135)
T PF07738_consen  126 LYRFRVHGES  135 (135)
T ss_dssp             E-EEEEEEE-
T ss_pred             EEEEEEEeeC
Confidence            9999999973

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

>KOG1396|consensus

Probab=98.06  E-value=4.7e-07  Score=79.38  Aligned_cols=79  Identities=24%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             CCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340         12 GIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP   91 (121)
Q Consensus        12 ~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~   91 (121)
                      .-.+|-||+|+|.+-.......|+.+|+|.--.. +.+|+|+++. ..+.+++++.++|.||...|+-|--+||.|..+.
T Consensus       189 e~~ss~pk~f~v~~s~~~P~~~w~~~G~f~a~N~-r~lQsF~~n~-~~wakYlKIellsHygsEfyCpvSli~VyG~tm~  266 (530)
T KOG1396|consen  189 EHFSSPPKDFSVSISIRYPTPSWIHLGQFHARNE-RNLQSFPLNE-QKWAKYLKIELLSHYGSEFYCPVSLIRVYGKTMV  266 (530)
T ss_pred             cccCCCCCceeeccccccCCccceecCcccccch-hhhcCCCCCc-hhhhhHhhhhhhhhcccccccchhhhhhhchhHH
Confidence            3578999999999887776667999999998777 5799999555 6899999999999999855555899999998764


Q ss_pred             C
Q psy13340         92 S   92 (121)
Q Consensus        92 ~   92 (121)
                      +
T Consensus       267 E  267 (530)
T KOG1396|consen  267 E  267 (530)
T ss_pred             H
Confidence            3

>cd00057 FA58C Substituted updates: Jan 31, 2002

Probab=97.05  E-value=0.0044  Score=43.36  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEE----EEE--cCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGE----FMY--DSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG   87 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~----f~Y--d~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG   87 (121)
                      ..-++.|+|.+..+.  ..|..+.+    ..|  ..++...+++.+.. ....++|+|.++++.|   +.|| ||.|+|
T Consensus        72 ~~~~~~~~i~~s~dg--~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~-pv~aRyvRl~~~~~~~---~~~l-e~evyG  143 (143)
T cd00057          72 SEWVTSYKVQYSLDG--ETWTTYKDKGEEKVFTGNSDGSTPVTNDFPP-PIVARYIRILPTTWNG---NISL-RLELYG  143 (143)
T ss_pred             cCeeEEEEEEEECCC--CCEeEEEcCCcEEEEeCCcCCCeEEEEeCCC-CEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence            445778888766553  23555553    233  33335688888877 3578999999999777   8999 999998

>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome

Probab=95.11  E-value=0.064  Score=40.26  Aligned_cols=66  Identities=21%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             CCCCCCCeEEEEEE-ecCCCCCceEEEEEEEcC--CCCceeEEEecCC--------------CccccEEEEEEecCCCCC
Q psy13340         13 IIDSAPKKFAVWGL-REKYDENPTLLGEFMYDS--EGPTLQYFEAKMV--------------ADTFDMVELKILSNHGNI   75 (121)
Q Consensus        13 ~~sSAPKdF~V~G~-~~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~--------------~~~~~~V~l~i~SN~Gn~   75 (121)
                      +-.+|||.+.||.= ...-          .|+.  +..+.|++++...              =.-++.+.|-|.+|+|..
T Consensus        69 ~~~~~P~~iKlf~N~~~~l----------dF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~KFqnV~sLtif~~~n~g~~  138 (152)
T PF06201_consen   69 DDDSAPKTIKLFINQRPNL----------DFDDAESIKPTQELELTEEDSDGGVEYPLKFVKFQNVNSLTIFFEDNQGGD  138 (152)
T ss_dssp             STTTSEEEEEEEES-SS-------------CCHHCCS--SCEEE--TTTCCCT--EE--TTT-TTEEEEEEEEEEETT--
T ss_pred             CCCCCCeEEEEEECCCCCc----------CccccccCCCCceEEcCccccCCceEeeeeeeccCCccEEEEEEeCCcCCC
Confidence            45899999999985 2211          1221  2246677766651              136789999999999977


Q ss_pred             CCceEEEEEEece
Q psy13340         76 EYTCLYRFRVHGN   88 (121)
Q Consensus        76 ~YTClYR~RVHG~   88 (121)
                      +-|-||++++.|+
T Consensus       139 ~~T~I~~i~l~G~  151 (152)
T PF06201_consen  139 DVTRIYYIGLRGE  151 (152)
T ss_dssp             SS-EESEEEEEEE
T ss_pred             ccEEEEEEEEEee
Confidence            9999999999996

PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.

>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=86.43  E-value=5.2  Score=31.26  Aligned_cols=81  Identities=16%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             CCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-C--ccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340         16 SAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-A--DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS   92 (121)
Q Consensus        16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~--~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~   92 (121)
                      =.|+.+.|.+=....+  ...+...+.+... .-....|... .  ..+..|++.|++||=+..-|.|-.+||.|-....
T Consensus        95 YtPs~I~V~aG~~~~d--l~e~~~v~l~~p~-GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~~  171 (193)
T PF03256_consen   95 YTPSKISVRAGNSPHD--LQEVKTVELEEPN-GWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPSE  171 (193)
T ss_dssp             GSEEEEEEEEESSTTT---EEEEEEEECC-E-EEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE----
T ss_pred             CCceEEEEEEeCCcCc--eEEEEEEEecCCC-ccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCcc
Confidence            3566666655443332  2455555555411 2234455443 2  2456799999999999999999999999977765


Q ss_pred             CCCCCcc
Q psy13340         93 PSPVHTY   99 (121)
Q Consensus        93 ~~~~~~~   99 (121)
                      .....+.
T Consensus       172 ~~~~~~~  178 (193)
T PF03256_consen  172 SSSANDD  178 (193)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            4444433

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.

>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain

Probab=83.83  E-value=6.9  Score=25.87  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEecCCCCCceEEEEEEEc-CCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEE
Q psy13340         17 APKKFAVWGLREKYDENPTLLGEFMYD-SEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLY   81 (121)
Q Consensus        17 APKdF~V~G~~~~~~~~~~~LG~f~Yd-~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClY   81 (121)
                      .|+.|.|....+.  ..|..+++..++ ......+...+.. ....++|+|.+++-.|...+.+|.
T Consensus        65 ~~~~~~i~~s~dg--~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~ryiri~~~~~~~~~~~~~i~  127 (129)
T PF00754_consen   65 RPKSFKIEYSNDG--SNWTTVASQFYGNTNSGSVVTISFFP-PVKARYIRITVTSWNGNNGWVSIA  127 (129)
T ss_dssp             EEEEEEEEEESSS--SSEEEEEETEEEESSSSSSEEEEEEE-EEEEEEEEEEEEEEESCSSEEEEE
T ss_pred             eeeeeeeeeeccc--ccccccccceeeccCCCceEEEEeCC-CeEEEEEEEEEEEECCCCceEEEE
Confidence            7899999988665  347788775222 2333344444444 346799999998644555677665

In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=82.32  E-value=17  Score=26.89  Aligned_cols=72  Identities=17%  Similarity=0.087  Sum_probs=48.2

Q ss_pred             CCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC----CccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340         13 IIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV----ADTFDMVELKILSNHGNIEYTCLYRFRVHG   87 (121)
Q Consensus        13 ~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~----~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG   87 (121)
                      |=+=.|+.+.|.+=....+  ...+...+.+.. ..-..+.|...    ...+..|++.|++||=|..-|=|--+||+|
T Consensus        64 DeSYtP~~I~v~~G~~~~d--l~e~~~v~l~~p-~Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g  139 (139)
T cd08366          64 DESYTPSKISIRAGTSPHD--LQEVRTVELEEP-NGWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG  139 (139)
T ss_pred             CCCCCCEEEEEEEECCcCc--hhheEEEEcCCC-CEEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence            4456777777776554433  234555555544 22344555542    256779999999999999999999999987

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
4fi9_A	195	Structure Of Human Sun-Kash Complex Length = 195		2e-22
4dxt_A	198	Human Sun2 (Aa 522-717) Length = 198		2e-22
3unp_A	203	Structure Of Human Sun2 Sun Domain Length = 203		2e-22
4dxr_A	202	Human Sun2-Kash1 Complex Length = 202		2e-22

>pdb|4FI9|A Chain A, Structure Of Human Sun-Kash Complex Length = 195

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q  +F+A  +A
Sbjct: 104 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 163
Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 164 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 194

>pdb|4DXT|A Chain A, Human Sun2 (Aa 522-717) Length = 198

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q  +F+A  +A
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166
Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 167 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197

>pdb|3UNP|A Chain A, Structure Of Human Sun2 Sun Domain Length = 203

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q  +F+A  +A
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166
Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 167 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197

>pdb|4DXR|A Chain A, Human Sun2-Kash1 Complex Length = 202

Iteration: 1
 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q  +F+A  +A
Sbjct: 111 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 170
Query: 59  DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
            T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 171 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 201

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
4dxt_A	198	SUN domain-containing protein 2; beta-sandwich, LI	7e-35

>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* Length = 198

 Score =  118 bits (296), Expect = 7e-35
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFE-AKMVAD 59
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q F        
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
           T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 167 TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
4dxt_A	198	SUN domain-containing protein 2; beta-sandwich, LI	100.0
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	98.92
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	98.16
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	97.3
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	97.17
2j1a_A	150	Hyaluronidase, CBM32; protein-carbohydrate interac	96.37
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	95.75
3hnm_A	172	Putative chitobiase; PSI-2, protein structure init	95.13
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	94.84
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	94.59
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	94.57
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	93.87
2v72_A	143	CBM32, EXO-alpha-sialidase; galactose, bacterial p	93.6
1jhj_A	171	APC10; beta sandwich, jellyroll, cell cycle; 1.60A	93.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	89.5
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	88.92

>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A

Probab=100.00  E-value=1.5e-37  Score=240.20  Aligned_cols=90  Identities=51%  Similarity=0.956  Sum_probs=85.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340          1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC   79 (121)
Q Consensus         1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC   79 (121)
                      ||||+++++|+++++||||+|+|||+.++.++++++||+|+||.++..+|+|+|+.+ ...++.|+|+|+|||||++|||
T Consensus       107 ieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~~~~~~~V~l~i~SN~G~~~~TC  186 (198)
T 4dxt_A          107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHPEYTC  186 (198)
T ss_dssp             EECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCCSCCEEEEEEEECCBSSCSSEEE
T ss_pred             EEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCCCcceeEEEEEEECCCCCCCcEE
Confidence            699999999999999999999999999988778899999999999989999999987 6789999999999999999999


Q ss_pred             EEEEEEeceeC
Q psy13340         80 LYRFRVHGNLA   90 (121)
Q Consensus        80 lYR~RVHG~~~   90 (121)
                      ||||||||+++
T Consensus       187 lYr~RVhG~~~  197 (198)
T 4dxt_A          187 IYRFRVHGEPA  197 (198)
T ss_dssp             ECEEEEEEECC
T ss_pred             EEEEEEcCEeC
Confidence            99999999985

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=98.92  E-value=3.4e-09  Score=76.23  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             CCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340         18 PKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGN   88 (121)
Q Consensus        18 PKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~   88 (121)
                      +|+|+|.+..+.....|..+++.++.......|++.++.. ..+++|+|+|+++||+  |+|||||+|+|.
T Consensus        71 ~k~~~ie~s~~~~p~~w~~i~~~~f~~~~~~~q~~~f~~~-~~a~~lrl~i~s~~d~--f~~iy~~~v~G~  138 (139)
T 2yc2_A           71 VRKLAVEKCDQDKPDQFEKVFEVELANRGDRLQTEVHQVN-IRAKYLKFILLQGHGE--FATVNRVSVVGG  138 (139)
T ss_dssp             EEEEEEEEECSSSCCCCEEEEEEECCCC--CCEEEEEEEE-EEEEEEEEEEEEESSS--CCEEEEEEEEEC
T ss_pred             CcEEEEEEecCCCCCceEEEEEEEeecCCCCceEEEccCC-CcEEEEEEEEEeccCc--eEEEEEEEEEec
Confidence            5677777665543346888888777665457899766542 2389999999999996  899999999996

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=98.16  E-value=1.1e-05  Score=59.37  Aligned_cols=72  Identities=11%  Similarity=0.026  Sum_probs=54.9

Q ss_pred             CCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340         18 PKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS   92 (121)
Q Consensus        18 PKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~   92 (121)
                      +|+|+|.+..+.....|..+++.+|.......|+|.++. ....++|+|.|+++++.  |.+||+|+|.|....+
T Consensus        79 vk~~~ie~s~d~~p~~w~~i~e~ef~~~~n~~Q~~~~~~-~~~a~~lRl~i~s~~d~--fv~Iy~l~v~G~~~~~  150 (153)
T 1tvg_A           79 VQTLKIEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIVA-HGSATYLRFIIVSAFDH--FASVHSVSAEGTVVSN  150 (153)
T ss_dssp             EEEEEEEEECSSSSCCCEEEEEEECCCCTTCCEEEEECC-CEEEEEEEEEEEEESSS--CCEEEEEEEEEEEEC-
T ss_pred             CEEEEEEEECCCCCcceEEeEEEEecCCCCcEEEEEcCC-CceeEEEEEEEEccccc--EEEEEEEEEEEEEccc
Confidence            455555554433212688899988877655689999986 34689999999999995  8999999999998765

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=97.30  E-value=0.0022  Score=45.35  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS   92 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~   92 (121)
                      ...|++|+|+...|.  ..|..++++++...+ ..|+|.++  ....++|+|++++++|+..+.+|.-|+|+|....-
T Consensus        80 ~~~~~~~~I~~S~Dg--~~W~~v~~~~~~~~~-~~~~~~~~--~~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~~~~  152 (159)
T 3f2z_A           80 NNPIKVVRFEASEDG--TNWESIGQFGFTNQD-AALKYYVK--SSTARYIKLVIPDGVGNGTVAAIRELDVRGTVVNL  152 (159)
T ss_dssp             CCCCCEEEEEEESSS--SSCEEEEEEECCCCS-SCEEECCC--CEEEEEEEEEECSSSSCCSCCEEEEEEEEEEECC-
T ss_pred             CCCeeEEEEEEEcCC--CCeEEeEEeecCCCC-ccEEEecC--CceEEEEEEEEEeccCCCceEEEEEEEEEcCCCCc
Confidence            457999999986654  357889998876543 46777554  35789999999999997679999999999987653

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.0036  Score=44.97  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS   92 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~   92 (121)
                      ...|++|+|+...|.  ..|..+++.++...+ ..|++.++.  ...++|+|++++++|+..+.+|.-|+|+|....-
T Consensus        90 ~~~~~~y~I~~S~Dg--~~W~~v~~~~~~~~~-~~~~~~f~~--~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~~~~  162 (169)
T 3ggl_A           90 NNPIKVVEFAASEDN--VNWTPIGRFGFTNQD-AALEYYVKS--IKARYIRLTIPDDGGNSTVAAIRELDVKGTIINL  162 (169)
T ss_dssp             CCCCCEEEEEEESSS--SCCEEEEEEECCCCS-SCEEECCCC--EEEEEEEEEECSSSSCCSCCEEEEEEEEEEECC-
T ss_pred             CCCeeEEEEEEeCCC--CCcEEeEEEEeccCC-CcEEEEecC--ceEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCc
Confidence            457999999986554  357889998876553 357775543  4789999999999997679999999999987653

>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*

Probab=96.37  E-value=0.011  Score=40.08  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCC-----CCCCCceEEEEEEec
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNH-----GNIEYTCLYRFRVHG   87 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~-----Gn~~YTClYR~RVHG   87 (121)
                      ...|+.|+|.+..+.  ..|..+++.+++..+ ..|++.+..  ...++|+|.+++.+     |...+.+|+-|+|+|
T Consensus        78 ~~~~~~~~i~~S~Dg--~~w~~v~~~~~~~~~-~~~~~~~~~--~~aryvRi~~~~~~~~~~~~~~~~~~i~Ei~v~G  150 (150)
T 2j1a_A           78 NGRITGYKVSVSLDG--ENFTEVKTGTLEDNA-AIKFIEFDS--VDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG  150 (150)
T ss_dssp             TTEEEEEEEEEESSS--SSEEEEEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEECCC--CTTTCCEESEEEEEC
T ss_pred             CCCEEEEEEEEEcCC--CceEEEEEeeECCCC-ceEEEEECC--eEEEEEEEEEEecccccccCCCceEEEEEEEEeC
Confidence            346788888877553  347788887766554 357776663  47899999999765     233689999999998

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=95.75  E-value=0.076  Score=36.02  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             CCCCeEEEEEEecCCCCCceEEEEEEEcCC-CCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340         16 SAPKKFAVWGLREKYDENPTLLGEFMYDSE-GPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS   92 (121)
Q Consensus        16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~-~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~   92 (121)
                      ..|++|.|....|..  .|..+.+.+.... ....+++.+.  ....++|+|.+..+.++ .+..|+.|+|+|....+
T Consensus        68 ~~~~~~~i~~S~Dg~--~w~~~~~~~~~~~~~~~~~~~~f~--~~~aryvRi~~~~~~~~-~~~~i~Ei~v~g~~~~~  140 (145)
T 2jda_A           68 ERKLKFSIFYSNDGK--NWQPLAEGLETSSADKNGEKLTFT--PVTAKYIKLDTFGTDVN-NWSAINEIAINSAAALP  140 (145)
T ss_dssp             TCCEEEEEEEESSSS--SCEEEEEEEECCCSCSSCEEEEEE--EEEEEEEEEEEEEESSS-SEEEEEEEEESCCCSSC
T ss_pred             CceEEEEEEEeCCCC--ceEEeeeCccccCCCCccEEEEeC--cccEEEEEEEEECCCCC-cEeEEEEEEEECCCCCC
Confidence            368899998865432  4777877665222 2345777773  34779999999998875 47899999999987654

>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}

Probab=95.13  E-value=0.024  Score=41.87  Aligned_cols=56  Identities=11%  Similarity=-0.013  Sum_probs=43.1

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCC
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGN   74 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn   74 (121)
                      ...||+++||+..+..  .|..||++++...+...+.+.+++  ..+++|+|.|++.|+.
T Consensus        94 ~g~ik~~~I~~S~Dg~--~W~~v~~~~~~~~~~~~~~~~~~~--~~aRYIR~~v~~g~~~  149 (172)
T 3hnm_A           94 AGTSKAGYVEASIDNE--NWVKLKDWTSPKIGEPNVNMDVPA--TQARYIRFVITDTYPT  149 (172)
T ss_dssp             TCCEEEEEEEEESSSS--CEEEEECCBCSSTTCSCEEEEEEE--EEEEEEEEEEEEECCC
T ss_pred             CCCeEEEEEEEEeCCC--CeEEeEEEEecCCCCceEEeecCC--CceEEEEEEEccCccc
Confidence            4589999999987753  589999999988765444444433  4679999999998863

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}

Probab=94.84  E-value=0.024  Score=42.58  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=47.0

Q ss_pred             CCCCCeEEEEEEe-cCCCCCceEEEEEEEcC--CCCceeEEEecCC-------------C-ccccEEEEEEecCCCCCCC
Q psy13340         15 DSAPKKFAVWGLR-EKYDENPTLLGEFMYDS--EGPTLQYFEAKMV-------------A-DTFDMVELKILSNHGNIEY   77 (121)
Q Consensus        15 sSAPKdF~V~G~~-~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~-------------~-~~~~~V~l~i~SN~Gn~~Y   77 (121)
                      .+|||.+.||.=. ..-+          ||.  +..+.|+|+|...             + ..++.+.|-|.+|||..+-
T Consensus        74 ~~~Pk~iKlf~N~~~~ld----------Fd~a~~~~p~Q~~eL~~~~~~~g~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~  143 (171)
T 1wwy_A           74 GQGPKYVKIFINLPRSMD----------FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEET  143 (171)
T ss_dssp             SCCBCEEEEEESCSSCCC----------TTHHHHSCCSSCEECCTTTSSTTCCEECCTTTCTTEEEEEEEECCBTTCCSS
T ss_pred             CCCCcEEEEeecCCCCcC----------hhhhccCCCceEEEcCCcccCCCcEEEccceEEcccCEEEEEEecCCCCCcc
Confidence            5799999999654 2212          111  1235566655543             1 2456788889999977789


Q ss_pred             ceEEEEEEeceeCCC
Q psy13340         78 TCLYRFRVHGNLAPS   92 (121)
Q Consensus        78 TClYR~RVHG~~~~~   92 (121)
                      |-||++++.|++...
T Consensus       144 T~I~~I~l~Ge~~~~  158 (171)
T 1wwy_A          144 TRISYFTFIGTPVQA  158 (171)
T ss_dssp             CCBCCEEEEEEESSC
T ss_pred             EEEEEEEEEeEecCc
Confidence            999999999998764

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=94.59  E-value=0.15  Score=42.49  Aligned_cols=69  Identities=10%  Similarity=0.062  Sum_probs=50.6

Q ss_pred             CCCCeEEEEEEecCCCCCceE-EEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEecee
Q psy13340         16 SAPKKFAVWGLREKYDENPTL-LGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNL   89 (121)
Q Consensus        16 SAPKdF~V~G~~~~~~~~~~~-LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~   89 (121)
                      ..++.|+|++..+..  .|.. +..-++..++ ..|++.+..  ...++|+|++++++|...+.+|.-|+|+|.+
T Consensus       532 ~~~~~y~i~~S~Dg~--~w~~~v~~~~~~~~~-~~~~~~f~~--~~aRyvRi~~~~~~~~~~~~~i~Ei~v~g~~  601 (601)
T 1w8o_A          532 EQVADYEIYTSLNGT--TWDGPVASGRFTTSL-APQRAVFPA--RDARYIRLVALSEQTGHKYAAVAELEVEGQR  601 (601)
T ss_dssp             TCBCEEEEEEESSSS--SCEEEEEEEECCSCS-SCEEEEEEE--EEEEEEEEEECCBTTSCSCCEEEEEEEEECC
T ss_pred             CceEEEEEEEECCCC--ccceeeeeEEEcCCC-ceEEEEeCC--cceEEEEEEEEEcCCCCceEEEEEEEEEecC
Confidence            368899999886653  3553 5555555443 356666653  4679999999999987689999999999964

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=94.57  E-value=0.084  Score=37.61  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH   86 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH   86 (121)
                      ...|++|+|+...|.  ..|..+++.+++.++ ..|++.+..  ...++|+|.++++.|+  |.+|.-|+|+
T Consensus        96 ~~~~~~y~I~~S~DG--~~W~~v~~g~~~~~~-~~~~~~f~~--v~aRYVRi~~~~~~~~--~~si~E~~Vy  160 (161)
T 4a41_A           96 NGNITKYELHVSEDG--NNFRKISEGNWDDSG-SLKTLKFNS--TKATHVKLVALEGVGG--FASAAELNVF  160 (161)
T ss_dssp             TTCEEEEEEEEESSS--SCEEEEEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEGGG--CCEESEEEEE
T ss_pred             CCcEEEEEEEEECCC--CceEEeeeeeecCCC-cEEEEEeCC--ceEEEEEEEEEEccCC--eEEeEeEEEE
Confidence            346888999886544  347788877766554 367777763  4679999999999884  8899999986

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26

Probab=93.87  E-value=0.078  Score=39.28  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=44.6

Q ss_pred             CCCCeEEEEEEecCCCCCceEEEEEEEcC--CCCceeEEEecCCC-------------ccccEEEEEEecCCCCCCCceE
Q psy13340         16 SAPKKFAVWGLREKYDENPTLLGEFMYDS--EGPTLQYFEAKMVA-------------DTFDMVELKILSNHGNIEYTCL   80 (121)
Q Consensus        16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~~-------------~~~~~V~l~i~SN~Gn~~YTCl   80 (121)
                      +|||.+.||.=...-          .||.  +..+.|+|++....             ..++.+.|-|.+|||..+-|-|
T Consensus        83 ~~Pk~iKlf~N~~~l----------dFd~a~~~~p~Q~~el~~~~~~g~~~~lr~vkFqnV~sLtlf~~~n~~g~e~T~I  152 (161)
T 1xoy_A           83 EGPKTVKFFSNKEHM----------CFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKV  152 (161)
T ss_dssp             TSEEEEEEEESCSCC----------CHHHHTTSCCSEEECCCTTGGGTCCEECCTTTCSCEEEEEEEEEEETTCCSCCEE
T ss_pred             CCCcEEEEeeCCCCC----------ChhhhccCCCceEEECCCCcCCCcEEeccceeEcccCEEEEEEecCCCCCccEEE
Confidence            799999999543321          1222  12456776665431             2456788889999977789999


Q ss_pred             EEEEEecee
Q psy13340         81 YRFRVHGNL   89 (121)
Q Consensus        81 YR~RVHG~~   89 (121)
                      |++++.|++
T Consensus       153 ~~I~l~G~~  161 (161)
T 1xoy_A          153 QKIALYGST  161 (161)
T ss_dssp             SEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999975

>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}

Probab=93.60  E-value=0.13  Score=34.62  Aligned_cols=65  Identities=9%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH   86 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH   86 (121)
                      ...++.|+|+...+...   ..+...+++..+ ..+++.+.. ....++|+|.+++.+|  .|.+|.-|+|+
T Consensus        78 ~~~~~~~~i~~S~Dg~~---~~v~~g~~~~~~-~~~~~~f~~-p~~aRyvRi~~~~~~~--~~~~i~Ei~v~  142 (143)
T 2v72_A           78 NGFITKYEIHAINNGVE---TLVAEGTWEENN-LVKTVTFDS-PIDAEEIKITAIQGVG--GFASIAELNVY  142 (143)
T ss_dssp             TTCEEEEEEEEEETTEE---EEEEEEECCSSS-SCEEEEEEE-EEEEEEEEEEEEEEGG--GCCEESEEEEE
T ss_pred             CCCEEEEEEEEEcCCCc---cEEeEEEEcCCC-ceEEEEeCC-CCcEEEEEEEEEEcCC--CeEEEEEEEEE
Confidence            34578888887765432   344444444433 356666654 2467999999999998  58999999986

>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9

Probab=93.32  E-value=0.29  Score=36.61  Aligned_cols=74  Identities=14%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC---CccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP   91 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~---~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~   91 (121)
                      +=.|+.++|.+=.+..  ....+...+.+.. ..-..+.+...   ......|++.|++||.|..-|+|-.+||+|....
T Consensus        87 SYtPs~I~v~aG~~~~--dL~ei~~v~l~~p-~Gwv~i~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~~~  163 (171)
T 1jhj_A           87 SYTPSKISVRVGNNFH--NLQEIRQLELVEP-SGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEE  163 (171)
T ss_dssp             GGSEEEEEEEEESSTT--SCEEEEEEECSSC-EEEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC--
T ss_pred             CCCcEEEEEEEeCCcc--cceeEEEEEccCC-CEEEEEEeccCCCCceeEEEEEEEEeccCCCCCccEEEEEEEEecCCC
Confidence            3356666665544433  3567888877754 23456666432   2455699999999998888999999999998544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=89.50  E-value=0.71  Score=38.82  Aligned_cols=69  Identities=9%  Similarity=0.058  Sum_probs=52.4

Q ss_pred             CCCeEEEEEEecCCCCCc-eEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeC
Q psy13340         17 APKKFAVWGLREKYDENP-TLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA   90 (121)
Q Consensus        17 APKdF~V~G~~~~~~~~~-~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~   90 (121)
                      -+++|+|+...|...  | ..+.+.+++.++. .|++.+..  ...++|+|+++++.+...|..|.-|+|+|...
T Consensus        98 ~~~~y~i~~S~Dg~~--w~~~v~~~~~~~~~~-~~~~~~~~--~~aRyvRi~~~~~~~~~~~~si~E~~v~~~~~  167 (656)
T 1k3i_A           98 WIGRHEVYLSSDGTN--WGSPVASGSWFADST-TKYSNFET--RPARYVRLVAITEANGQPWTSIAEINVFQASS  167 (656)
T ss_dssp             CBCEEEEEEESSSSC--CCSCSEEEECCSSSS-CEEEEEEE--EEEEEEEEEECSBTTSCSCCEESEEEEEECSC
T ss_pred             CeeEEEEEEECCCCC--cceeeeeeeecCCCc-ceeeecCC--cceEEEEEEEecccccCCceeEEEEEEeeccc
Confidence            589999998776543  5 5666666666553 46666653  46799999999999877789999999999863

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=88.92  E-value=0.61  Score=41.28  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             CCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCC-----CCCCCceEEEEEEec
Q psy13340         17 APKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNH-----GNIEYTCLYRFRVHG   87 (121)
Q Consensus        17 APKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~-----Gn~~YTClYR~RVHG   87 (121)
                      -++.|+|+...|..  .|..+++.++..++ ..|++.+..  ...++|+|.+++++     |+..+..|+-|+|+|
T Consensus       667 ~v~~y~I~~S~DG~--~W~~v~~gt~~~~~-~~~~v~f~~--v~ARYVRi~~~~~~~~~~~G~~~~~siaE~~VyG  737 (737)
T 2v5d_A          667 RITGYKVSVSLDGE--NFTEVKTGTLEDNA-AIKFIEFDS--VDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG  737 (737)
T ss_dssp             EEEEEEEEEESSSS--CCCCSEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEECSSSSCTTTCCEESEEEEEC
T ss_pred             ceEEEEEEEEcCCC--ceEEEEeeeecCCC-ceEEEEeCC--ceEEEEEEEEEeeccccccCCCCcEEEEEEEEEC
Confidence            45777777765543  35666666655433 456666653  46799999999886     345789999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	97.75
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	96.9
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	96.33
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	95.5
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	94.59
d1xoya_	161	Hypothetical protein AT3g04780/F7O18_27 {Thale cre	91.63
d1o59a1	188	Allantoicase {Baker's yeast (Saccharomyces cerevis	90.15

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00011  Score=49.79  Aligned_cols=56  Identities=13%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             CCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeC
Q psy13340         32 ENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA   90 (121)
Q Consensus        32 ~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~   90 (121)
                      ..|..+++.+....+...|+-.+.. ....++|+|+|+++||+  |..||.|+|.|...
T Consensus        80 ~~w~~v~~~~~~~~~~~~~~~~~~~-~~~aryvR~~i~s~~g~--~~~i~ev~v~G~~v  135 (136)
T d1tvga_          80 VDFEQWIEKDLVHTEGQLQNEEIVA-HGSATYLRFIIVSAFDH--FASVHSVSAEGTVV  135 (136)
T ss_dssp             CCCEEEEEEECCCCTTCCEEEEECC-CEEEEEEEEEEEEESSS--CCEEEEEEEEEEEE
T ss_pred             ceeEEEEEecccCCCCcceEEecCC-ccEEEEEEEEEEeccCC--cEEEEEEEEEeEEc
Confidence            4578899988877654444433333 34669999999999994  99999999999764

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.90  E-value=0.0056  Score=39.98  Aligned_cols=71  Identities=10%  Similarity=0.076  Sum_probs=50.8

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEecee
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNL   89 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~   89 (121)
                      ..-|++|.|.+-.+... ...++...+.+..+ ..|.|.+..  ..+++|+|++++++|...+..|--|+|+|+.
T Consensus        72 ~~~~~~~~i~~S~dg~~-w~~~~~~~~~~~~~-~~~~~~~~~--~~aryvRl~~~~~~~~~~~~~i~Ei~v~G~~  142 (142)
T d1w8oa2          72 NEQVADYEIYTSLNGTT-WDGPVASGRFTTSL-APQRAVFPA--RDARYIRLVALSEQTGHKYAAVAELEVEGQR  142 (142)
T ss_dssp             TTCBCEEEEEEESSSSS-CEEEEEEEECCSCS-SCEEEEEEE--EEEEEEEEEECCBTTSCSCCEEEEEEEEECC
T ss_pred             cCCceeEEEEEecCCCc-eEEEEEeeecCCCC-ceEEEecCc--eEEEEEEEEEEecCCCCceEEEEEEEEEEEC
Confidence            44699999998765433 12344444444443 467777654  3679999999999987788999999999973

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0027  Score=44.44  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             CCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC---CccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340         14 IDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHG   87 (121)
Q Consensus        14 ~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~---~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG   87 (121)
                      -+-.|++++|++-.+..  .|..+.+++.+... .-....+...   ....++|+|.|.+|+.+..-|+|.-|||+|
T Consensus        86 ~s~~p~~~~i~~s~d~~--~w~~v~~~~~~~~~-g~~~~~~~~~~~~~~~~ryiri~i~~n~~~G~D~~Ir~i~V~G  159 (161)
T d1jhja_          86 ESYTPSKISVRVGNNFH--NLQEIRQLELVEPS-GWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYT  159 (161)
T ss_dssp             GGGSEEEEEEEEESSTT--SCEEEEEEECSSCE-EEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEE
T ss_pred             cCCCcEEEEEEEcCCcC--CceeEEEEEecCCC-CceEEEeeccCCCcEEEEEEEEEEeecccCCcccEEEEEEEEe
Confidence            34578999999866654  37889988877543 2234444332   345689999999998666789999999999

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.031  Score=40.41  Aligned_cols=71  Identities=14%  Similarity=0.024  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-----CccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-----ADTFDMVELKILSNHGNIEYTCLYRFRVHGN   88 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-----~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~   88 (121)
                      +-.|+.++|.+-.+..  .|..+...+.+... .-.++.+...     ...+++|+|+|++||-+..-|-|.-|||.|-
T Consensus       118 sy~p~~~~i~~s~d~~--~w~~v~t~~~~~~~-Gwv~i~l~~~~~~~~pv~aryIri~i~~nhqnGkDt~IR~irv~Gp  193 (194)
T d1gqpa_         118 SYAPSLVKVYAGHSPS--DARFYKMLEVRNVN-GWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVP  193 (194)
T ss_dssp             GGSEEEEEEEEESSTT--TCEEEEEEEEEECE-EEEEECCC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEE
T ss_pred             cCCceEEEEEEeCCcC--CceEEEEEEecCCC-ceEEEEcccCcccCCeEEEEEEEEEEEecccCCcccEEEeeEEeCC
Confidence            3467788887765544  36778877776532 2345555432     2355789999999998777788999999983

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.63  E-value=0.12  Score=36.53  Aligned_cols=65  Identities=15%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEEEecCCCCCceEEEEEEEcC--CCCceeEEEecCCC-------------ccccEEEEEEecCCCCCCCce
Q psy13340         15 DSAPKKFAVWGLREKYDENPTLLGEFMYDS--EGPTLQYFEAKMVA-------------DTFDMVELKILSNHGNIEYTC   79 (121)
Q Consensus        15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~~-------------~~~~~V~l~i~SN~Gn~~YTC   79 (121)
                      .+|||.+.||.=...       |   .|+.  ...+.|++++..+.             .-++.+.|-|.+|||..+.|=
T Consensus        82 ~~~Pk~iklf~N~~~-------i---dF~~a~~~~p~q~iel~~~~~~~~~~~L~~~kFqnV~sLtif~~~N~~g~e~T~  151 (161)
T d1xoya_          82 EEGPKTVKFFSNKEH-------M---CFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTK  151 (161)
T ss_dssp             TTSEEEEEEEESCSC-------C---CHHHHTTSCCSEEECCCTTGGGTCCEECCTTTCSCEEEEEEEEEEETTCCSCCE
T ss_pred             CCCCcEEEEEeCCCc-------C---CcchhhhCCccceEEeCCccCCceEEeecceeeccccEEEEEEeCCCCCCceEE
Confidence            589999999974322       1   1222  23566777766540             256788899999998788999


Q ss_pred             EEEEEEecee
Q psy13340         80 LYRFRVHGNL   89 (121)
Q Consensus        80 lYR~RVHG~~   89 (121)
                      ||++++.|+.
T Consensus       152 I~~I~l~Ges  161 (161)
T d1xoya_         152 VQKIALYGST  161 (161)
T ss_dssp             ESEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            9999999973

>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Allantoicase repeat
domain: Allantoicase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=1.4  Score=31.62  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEEEecC--------CCCCceEEEEEEEcCCCCceeEEEecCC--CccccEEEEEEecCCCCCCCceEEEEE
Q psy13340         15 DSAPKKFAVWGLREK--------YDENPTLLGEFMYDSEGPTLQYFEAKMV--ADTFDMVELKILSNHGNIEYTCLYRFR   84 (121)
Q Consensus        15 sSAPKdF~V~G~~~~--------~~~~~~~LG~f~Yd~~~~~iQtF~v~~~--~~~~~~V~l~i~SN~Gn~~YTClYR~R   84 (121)
                      .-.|-.++|.|+...        .+..|..|-.-+ .........|.+...  ..++..|+|.|-=--|      |-|||
T Consensus       108 GN~P~~~Sie~~~~~~~~~~~~~~~~~W~~lL~~t-kL~~d~~h~F~~~~~~~~~~~THvRLnIyPDGG------IaRlR  180 (188)
T d1o59a1         108 GNHAPFVSIEALYDEGEEGNIVEDDSRWVEIVEKF-ECGPSQRHLFVRGNGLTKERFTHIKLKMYPDGG------IARFR  180 (188)
T ss_dssp             SSBCSEEEEEEECCCSCCSCCCTTCTTCEEEEEEE-ECCTTCEEEEECTTCSCSSCBSEEEEEEESCCE------ESEEE
T ss_pred             CCcccEEEEEEEecCCCcccccccccchhhhcccc-ccCCCccceeeccccccCCeeEEEEEEEECCCC------eeEEE
Confidence            347899999998532        123466555444 344455678988764  5689999999965555      78999


Q ss_pred             EeceeCCC
Q psy13340         85 VHGNLAPS   92 (121)
Q Consensus        85 VHG~~~~~   92 (121)
                      |+|++.++
T Consensus       181 v~G~vvpp  188 (188)
T d1o59a1         181 LYGRVVPP  188 (188)
T ss_dssp             EEEEECCC
T ss_pred             EeeeeCCC
Confidence            99998763