Psyllid ID: psy13344

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccEEEcccEEEEccccccEEEEccccccccccEEEEEEEccEEEEEEEccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHcHEEEEEccEEEEEcccccEEEEEccccHHHHHHHHHHHHHcccEEEEEccccccccccccccEccccccccEEEEEccccEEccccHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtglcdansrffksnkkqfpmfpfhetkikydeygnhsswaygeeiftgpIWKIVKEGEEEIVYgvdfnlkkerhlngcvldrfirptvVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWrnkdsglvs
Flexible Loop (DISEMBL)
mtglcdansrffksnkkqfpmfpFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKkerhlngcvldrfirptvvitDTMSAIYQqarrrtrdeRLMTNILqtlrnngnvlvAVDTAGRVLELTHMLeqlwrnkdsglvs
Low Complexity Region (SEG)
MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS
Disordered region (IsUnstruct)
****************KQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR********
Disordered Region (DISOPRED)
*******NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY*****RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL**
Disordered Region (DISEMBL)
MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS
Disordered Region (DISPRO)
****CDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q9V3D6	756	Probable cleavage and pol	no	N/A	0.832	0.170	0.627	7e-44
Q10568	782	Cleavage and polyadenylat	yes	N/A	0.696	0.138	0.638	1e-37
O35218	782	Cleavage and polyadenylat	yes	N/A	0.696	0.138	0.638	2e-37
Q9P2I0	782	Cleavage and polyadenylat	yes	N/A	0.696	0.138	0.638	2e-37
Q9W799	783	Cleavage and polyadenylat	N/A	N/A	0.677	0.134	0.657	4e-37
O17403	843	Probable cleavage and pol	yes	N/A	0.838	0.154	0.469	5e-30
A8XUS3	842	Probable cleavage and pol	N/A	N/A	0.8	0.147	0.448	2e-26
Q9LKF9	739	Cleavage and polyadenylat	yes	N/A	0.664	0.139	0.504	9e-24
Q652P4	738	Cleavage and polyadenylat	yes	N/A	0.774	0.162	0.406	1e-22
O74740	797	Cleavage factor two prote	yes	N/A	0.625	0.121	0.361	2e-14

>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2 OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1

 Score =  176 bits (445), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.
Drosophila melanogaster (taxid: 7227)

>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 89/108 (82%)

Query: 46  IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
           +  G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213

Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
            RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3' end pre-mRNA processing.

Bos taurus (taxid: 9913)

>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 89/108 (82%)

Query: 46  IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
           +  G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213

Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
            RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3' end pre-mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 89/108 (82%)

Query: 46  IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
           +  G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213

Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
            RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3' end pre-mRNA processing.

Homo sapiens (taxid: 9606)

>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query: 49  GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
           G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRD 216

Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
           E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. In X.laevis this subunit seems to be predominantly involved in cytoplasmic polyadenylation reaction. May also be involved in the histone 3'-end pre-mRNA processing.

Xenopus laevis (taxid: 8355)

>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 85/130 (65%)

Query: 24  FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
           +++T +   + G H +      +  G IW+I +   E+IVY VDFN KKERHLNGC  D 
Sbjct: 131 YNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDN 190

Query: 84  FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
           F RP ++IT        Q RR+ RDE+L+T IL+T+R  G+ ++ +DTAGRVLEL H+L+
Sbjct: 191 FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLD 250

Query: 144 QLWRNKDSGL 153
           QLW N D+GL
Sbjct: 251 QLWSNADAGL 260

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)

Query: 29  IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
           +K D   N ++   G  I  G +W+I +   E+I+Y VDFN +K+RHL+GC  D F RP 
Sbjct: 137 LKGDSGVNFTAMPAGHMI-GGSMWRICRITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPH 195

Query: 89  VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
           ++IT        Q +R+ RDE+L+T IL+T+R  G+ ++ +DTAGRVLEL ++L+QLW N
Sbjct: 196 LLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLDQLWAN 255

Query: 149 KDSGL 153
           +D+GL
Sbjct: 256 QDAGL 260

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2

 Score =  108 bits (271), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 46  IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
           +  G IW+I K+GE+ ++Y VD+N +KERHLNG VL  F+RP V+ITD   A+Y  Q  R
Sbjct: 154 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 212

Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
           + RD+  +  I + L   GNVL+ VDTAGRVLEL  +LEQ W  +
Sbjct: 213 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)

Query: 27  TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
            ++KY +  NH     GE I   P          +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 VRLKYSQ--NHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED-VVYAVDFNHRKERHL 183

Query: 77  NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
           NG  L  F+RP V+ITD  +A+     +R +D+  +  +++ L   G+VL+ +DTAGRVL
Sbjct: 184 NGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVL 243

Query: 137 ELTHMLEQLWRNK 149
           E+  +LEQ W  +
Sbjct: 244 EILLILEQYWAQR 256

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cft2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 49  GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------VLDRFIRPTVVITDTMSAIYQQ 101
           G +W ++KE E  ++Y VD+N  K++HLNG        +L+   RP  +ITD  +++   
Sbjct: 143 GTLWSLIKESES-VLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSI 201

Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
             R+ RDE  + +++ +L   G VL+ VD A RVLEL  +L+  W
Sbjct: 202 PSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHW 246

RNA-binding component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. May be involved in poly(A)-site recognition. May be involved in the association of the CPF, CPFIA and RNA polymerase II complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
195574631	664	GD21403 [Drosophila simulans] gi|1942012	0.832	0.194	0.635	1e-42
195054718	754	GH10247 [Drosophila grimshawi] gi|193896	0.832	0.171	0.627	2e-42
195392300	693	GJ24636 [Drosophila virilis] gi|19415288	0.832	0.186	0.620	2e-42
24650920	664	cleavage and polyadenylation specificity	0.832	0.194	0.627	4e-42
195109795	754	GI23051 [Drosophila mojavensis] gi|19391	0.832	0.171	0.620	4e-42
195341087	743	GM12754 [Drosophila sechellia] gi|194131	0.832	0.173	0.627	4e-42
194906654	756	GG11633 [Drosophila erecta] gi|190656044	0.832	0.170	0.627	4e-42
21358013	756	cleavage and polyadenylation specificity	0.832	0.170	0.627	4e-42
195503417	756	GE26465, isoform A [Drosophila yakuba] g	0.832	0.170	0.627	4e-42
194745794	756	GF16269 [Drosophila ananassae] gi|190628	0.832	0.170	0.627	4e-42

>gi|195574631|ref|XP_002105288.1| GD21403 [Drosophila simulans] gi|194201215|gb|EDX14791.1| GD21403 [Drosophila simulans]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 35  TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 94

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 95  CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 154

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NKDSGL++
Sbjct: 155 AHMLDQLWKNKDSGLMA 171

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054718|ref|XP_001994270.1| GH10247 [Drosophila grimshawi] gi|193896140|gb|EDV95006.1| GH10247 [Drosophila grimshawi]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY +DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIVYAIDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392300|ref|XP_002054797.1| GJ24636 [Drosophila virilis] gi|194152883|gb|EDW68317.1| GJ24636 [Drosophila virilis]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+I+Y +DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIIYAIDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24650920|ref|NP_733264.1| cleavage and polyadenylation specificity factor 100, isoform B [Drosophila melanogaster] gi|23172526|gb|AAN14148.1| cleavage and polyadenylation specificity factor 100, isoform B [Drosophila melanogaster]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 35  TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 94

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 95  CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 154

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 155 AHMLDQLWKNKESGLMA 171

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109795|ref|XP_001999467.1| GI23051 [Drosophila mojavensis] gi|193916061|gb|EDW14928.1| GI23051 [Drosophila mojavensis]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G +WKIVK GEE+I+Y VDFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTVWKIVKVGEEDIIYAVDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195341087|ref|XP_002037143.1| GM12754 [Drosophila sechellia] gi|194131259|gb|EDW53302.1| GM12754 [Drosophila sechellia]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194906654|ref|XP_001981406.1| GG11633 [Drosophila erecta] gi|190656044|gb|EDV53276.1| GG11633 [Drosophila erecta]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358013|ref|NP_651658.1| cleavage and polyadenylation specificity factor 100, isoform A [Drosophila melanogaster] gi|18203548|sp|Q9V3D6.1|CPSF2_DROME RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit; Short=CPSF 100 kDa subunit gi|5679134|gb|AAD46873.1|AF160933_1 LD14168p [Drosophila melanogaster] gi|7301732|gb|AAF56844.1| cleavage and polyadenylation specificity factor 100, isoform A [Drosophila melanogaster]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503417|ref|XP_002098643.1| GE26465, isoform A [Drosophila yakuba] gi|194184744|gb|EDW98355.1| GE26465, isoform A [Drosophila yakuba]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae] gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 27  TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
           T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query: 79  CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
           C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query: 139 THMLEQLWRNKDSGLVS 155
            HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
FB|FBgn0027873	756	Cpsf100 "Cleavage and polyaden	0.832	0.170	0.627	1.3e-39
UNIPROTKB|F1SD85	385	CPSF2 "Uncharacterized protein	0.677	0.272	0.647	2.2e-34
ZFIN|ZDB-GENE-040718-79	790	cpsf2 "cleavage and polyadenyl	0.677	0.132	0.647	3.3e-34
UNIPROTKB|F1NMN0	782	CPSF2 "Uncharacterized protein	0.677	0.134	0.657	5.2e-34
UNIPROTKB|Q10568	782	CPSF2 "Cleavage and polyadenyl	0.677	0.134	0.657	5.2e-34
UNIPROTKB|E2R496	782	CPSF2 "Uncharacterized protein	0.677	0.134	0.657	5.2e-34
UNIPROTKB|Q9P2I0	782	CPSF2 "Cleavage and polyadenyl	0.677	0.134	0.657	5.2e-34
MGI|MGI:1861601	782	Cpsf2 "cleavage and polyadenyl	0.677	0.134	0.657	5.2e-34
RGD|1309687	782	Cpsf2 "cleavage and polyadenyl	0.677	0.134	0.657	5.2e-34
UNIPROTKB|Q9W799	783	cpsf2 "Cleavage and polyadenyl	0.677	0.134	0.657	6.7e-34

FB|FBgn0027873 Cpsf100 "Cleavage and polyadenylation specificity factor 100" [Drosophila melanogaster (taxid:7227)]

 Score = 429 (156.1 bits), Expect = 1.3e-39, P = 1.3e-39
 Identities = 86/137 (62%), Positives = 105/137 (76%)

Query:    27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
             T++KY++  +     YG  I          G IWKIVK GEE+IVY  DFN KKERHL+G
Sbjct:   127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186

Query:    79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
             C LDR  RP+++ITD  +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct:   187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246

Query:   139 THMLEQLWRNKDSGLVS 155
              HML+QLW+NK+SGL++
Sbjct:   247 AHMLDQLWKNKESGLMA 263

GO:0006379 "mRNA cleavage" evidence=ISS;NAS

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS

GO:0003730 "mRNA 3'-UTR binding" evidence=NAS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1SD85 CPSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 68/105 (64%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +G+VL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

ZFIN|ZDB-GENE-040718-79 cpsf2 "cleavage and polyadenylation specific factor 2" [Danio rerio (taxid:7955)]

 Score = 380 (138.8 bits), Expect = 3.3e-34, P = 3.3e-34
 Identities = 68/105 (64%), Positives = 89/105 (84%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEI+YGVDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIIYGVDFNHKREIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+++TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

UNIPROTKB|F1NMN0 CPSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IEA

UNIPROTKB|Q10568 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Bos taurus (taxid:9913)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0006398 "histone mRNA 3'-end processing" evidence=ISS

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

UNIPROTKB|E2R496 CPSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0006398 "histone mRNA 3'-end processing" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

UNIPROTKB|Q9P2I0 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006398 "histone mRNA 3'-end processing" evidence=IDA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

MGI|MGI:1861601 Cpsf2 "cleavage and polyadenylation specific factor 2" [Mus musculus (taxid:10090)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISO;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1309687 Cpsf2 "cleavage and polyadenylation specific factor 2, 100kDa" [Rattus norvegicus (taxid:10116)]

 Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA;ISO

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IEA;ISO

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9W799 cpsf2 "Cleavage and polyadenylation specificity factor subunit 2" [Xenopus laevis (taxid:8355)]

 Score = 377 (137.8 bits), Expect = 6.7e-34, P = 6.7e-34
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query:    49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
             G IWKIVK+GEEEIVY VDFN K+E HLNGC L+   RP+++ITD+ +A Y Q RR+ RD
Sbjct:   157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRD 216

Query:   109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
             E+L+TN+L+TLR +GNVL+AVDTAGRVLEL  +L+Q+WR KD+GL
Sbjct:   217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P2I0	CPSF2_HUMAN	No assigned EC number	0.6388	0.6967	0.1381	yes	N/A
O35218	CPSF2_MOUSE	No assigned EC number	0.6388	0.6967	0.1381	yes	N/A
Q10568	CPSF2_BOVIN	No assigned EC number	0.6388	0.6967	0.1381	yes	N/A
Q9LKF9	CPSF2_ARATH	No assigned EC number	0.5047	0.6645	0.1393	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	155
COG1236	427	COG1236, YSH1, Predicted exonuclease of the beta-l	4e-09
TIGR03675	630	TIGR03675, arCOG00543, arCOG00543 universal archae	6e-05
COG1782	637	COG1782, COG1782, Predicted metal-dependent RNase,	7e-04

>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 51  IWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDER 110
              +  +G   I+Y  D   +K+R LNG  L       V+I ++         R   + R
Sbjct: 148 AILLEVDGGR-ILYTGDVKRRKDRLLNGAELPP--CIDVLIVESTYGDRLHPNRDEVERR 204

Query: 111 LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
            + ++   L   G VL+     GR  EL  +L +L    D
Sbjct: 205 FIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAGD 244

Length = 427

>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 57  EGEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSA--IYQQARRRTRDERLMT 113
           +G   IVY  DF  +K R L+  V ++F R  T+++  T      YQ +R    ++ L+ 
Sbjct: 336 DGLYNIVYTGDFKYEKTRLLDPAV-NKFPRVETLIMESTYGGRDDYQPSREEA-EKELIK 393

Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
            + +T++  G VL+ V   GR  E+  +LE+  R   
Sbjct: 394 VVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGL 430

This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782. Length = 630

>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 57  EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM---SAIYQQARRRTRDERLMT 113
           +G   IVY  DF  +K R L     ++F R   +I ++        Q  R    ++ L+ 
Sbjct: 342 DGLYNIVYTGDFKFEKTRLLEPAN-NKFPRVETLIMESTYGGRDDVQPPREEA-EKELIK 399

Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
            I  TL+  G VL+ V   GR  E+  +LE+  R  
Sbjct: 400 VINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKG 435

Length = 637

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2i7t_A	459	Structure Of Human Cpsf-73 Length = 459		1e-06
2ycb_A	636	Structure Of The Archaeal Beta-Casp Protein With N-		9e-05

>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24  FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
           FHE K    E      W Y      G    +++    +++Y  DF+ +++RHL    +  
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84  FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
            I+P ++I ++    +   +R  R+ R    +   +   G  L+ V   GR  EL  +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
           + W+N
Sbjct: 255 EYWQN 259

>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 55  VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
           + +G+  +VY  DF  ++ R L     +RF R   ++ ++    ++  Q  R   ++ L+
Sbjct: 340 IGDGQHNMVYTGDFKYEQSRLLEAAA-NRFPRIETLVMESTYGGHEDVQPSRNRAEKELV 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
             I  TLR  G +L+ V   GR  EL  +LE+  R
Sbjct: 399 KTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIR 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	1e-22
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	5e-05
2i7t_A	459	Cleavage and polyadenylation specificity factor 73	6e-08
3af5_A	651	Putative uncharacterized protein PH1404; archaeal	2e-07
2ycb_A	636	Beta-CAsp RNAse, cleavage and polyadenylation spec	4e-07
2xr1_A	640	Cleavage and polyadenylation specificity factor 1	5e-07

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717

 Score = 92.2 bits (228), Expect = 1e-22
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 11/142 (7%)

Query: 17  KQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTG-PIWKIVKEGEEEIVYGVDFNLKKERH 75
                  + +       Y   +  AY   +  G  IW I     E++VY   +N  ++  
Sbjct: 129 DHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCI-STYSEKLVYAKRWNHTRDNI 187

Query: 76  LNGC--------VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
           LN           L   +RP+ +IT        Q  ++ R +     + + L ++G+V++
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKK-RSKIFKDTLKKGLSSDGSVII 246

Query: 128 AVDTAGRVLELTHMLEQLWRNK 149
            VD +G+ L+L   + +L    
Sbjct: 247 PVDMSGKFLDLFTQVHELLFES 268

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 8   NSRFFKSNKKQFPMFPFHETKIKYDEYGNHS 38
           +     S   +  MFPF+  KIK D+YG   
Sbjct: 523 DIIIQPSAASKHKMFPFNPAKIKKDDYGTVV 553

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 55  VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
           ++    +++Y  DF+ +++RHL    +   I+P ++I ++    +   +R  R+ R    
Sbjct: 167 IEIAGVKLLYTGDFSRQEDRHLMAAEIP-NIKPDILIIESTYGTHIHEKREEREARFCNT 225

Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK----------DSGL 153
           +   +   G  L+ V   GR  EL  +L++ W+N            S L
Sbjct: 226 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSL 274

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 55  VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM--SAIYQQARRRTRDERLM 112
           +  G   I    DF     R L       F R   ++ ++    A   Q  R   ++RL+
Sbjct: 355 IGNGLHNIAITGDFKFIPTRLLEPANAK-FPRLETLVMESTYGGANDIQMPREEAEKRLI 413

Query: 113 TNILQTLRNNGNVLV---AVDTAGRVLELTHMLEQLWRNK 149
             I  T++  G VL+   AV   GR  E+  +LE+  R  
Sbjct: 414 EVIHNTIKRGGKVLIPAMAV---GRAQEVMMVLEEYARIG 450

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 55  VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM--SAIYQQARRRTRDERLM 112
           + +G+  +VY  DF  ++ R L       F R   ++ ++        Q  R   ++ L+
Sbjct: 340 IGDGQHNMVYTGDFKYEQSRLLEAAANR-FPRIETLVMESTYGGHEDVQPSRNRAEKELV 398

Query: 113 TNILQTLRNNGNVLV---AVDTAGRVLELTHMLEQLWRNKD 150
             I  TLR  G +L+   AV   GR  EL  +LE+  R   
Sbjct: 399 KTIYSTLRRGGKILIPVFAV---GRAQELMIVLEEYIRTGI 436

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 55  VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDT--MSAIYQQARRRTRDERLM 112
           + +G   +V+  D+  +K R  +  V   F R   VI++    +A   Q   +  ++ L 
Sbjct: 343 IGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNANAFQPALKDAEKHLQ 401

Query: 113 TNILQTLRNNGNVLV---AVDTAGRVLELTHMLEQLWRNKD 150
             +  T+   G  ++   AV   GR  E+  +LE+  R   
Sbjct: 402 MVVKNTIERGGIAVIPAFAV---GRSQEVMIVLEESIRKGL 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3iek_A	431	Ribonuclease TTHA0252; metallo beta lactamase fold	99.91
2i7t_A	459	Cleavage and polyadenylation specificity factor 73	99.88
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	99.83
3af5_A	651	Putative uncharacterized protein PH1404; archaeal	99.82
2ycb_A	636	Beta-CAsp RNAse, cleavage and polyadenylation spec	99.79
2xr1_A	640	Cleavage and polyadenylation specificity factor 1	99.78
3zdk_A	336	5' exonuclease apollo; hydrolase; HET: TLA; 2.16A	99.6
4b87_A	367	DNA cross-LINK repair 1A protein; dclre1A, DCLRE,	99.58
3zq4_A	555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	99.57
3bk2_A	562	RNAse J, metal dependent hydrolase; endoribonuclea	99.35
2az4_A	429	Hypothetical protein EF2904; structural genomics,	98.98
3g1p_A	258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	97.22
2e7y_A	280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	97.08
1zkp_A	268	Hypothetical protein BA1088; zinc binding protein,	96.9
2cbn_A	306	Ribonuclease Z; phosphodiesterase beta lactamase t	96.63
1y44_A	320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	96.58
3kl7_A	235	Putative metal-dependent hydrolase; structural gen	94.71
3md7_A	293	Beta-lactamase-like; ssgcid, hydrolase, structural	94.03
3jxp_A	321	Coenzyme PQQ synthesis protein B; alpha-beta prote	93.92
1vjn_A	220	Zn-dependent hydrolase of metallo-beta-lactamase s	91.93
3zwf_A	368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	89.65
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	88.43
2wyl_A	360	L-ascorbate-6-phosphate lactonase ULAG; hydrolase;	85.44
3bv6_A	379	Metal-dependent hydrolase; metallo protein, beta-l	84.73
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	84.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	84.52
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	84.37
3m8t_A	294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	83.5
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	83.31
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	83.2
3rpc_A	264	Possible metal-dependent hydrolase; structural gen	82.06
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	81.65
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	80.26

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*

Probab=99.91  E-value=5.6e-24  Score=182.28  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=108.4

Q ss_pred             CCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCC
Q psy13344         20 PMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR   86 (155)
Q Consensus        20 p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~   86 (155)
                      |+|+.+|        ++++|++++++.  +++++     |..||+.+..+.++++|+||||++..++.++..+..  +.+
T Consensus       104 ~~y~~~~~~~~~~~~~~l~~~~~~~l~--g~~v~~~~agH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~~l~~~~~--~~~  179 (431)
T 3iek_A          104 PFFGPEDVEEALGHLRPLEYGEWLRLG--ALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL--PPL  179 (431)
T ss_dssp             CSSCHHHHHHHHHTEEECCTTCCEEET--TEEEEEEECCSSTTCEEEEEEETTEEEEECCCCCCTTSSSSCCCCB--CCC
T ss_pred             CCCCHHHHHHHHhccEEcCCCCeEEeC--CEEEEEEeCCCCcCceEEEEEECCEEEEEeCCCCCCCCcccCCccc--cCC
Confidence            7788776        689999999995  57776     666665544445679999999999998998866643  368


Q ss_pred             CcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHh
Q psy13344         87 PTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN  148 (155)
Q Consensus        87 ~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~  148 (155)
                      +|+||+||||+++.|+++.+++++|.+.|.+++++||+||||+|++||+|||+++|+++|++
T Consensus       180 ~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~  241 (431)
T 3iek_A          180 ADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR  241 (431)
T ss_dssp             CSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG
T ss_pred             ccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999965

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A

Probab=99.88  E-value=1.9e-22  Score=173.12  Aligned_cols=128  Identities=20%  Similarity=0.374  Sum_probs=102.4

Q ss_pred             CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCC
Q psy13344         19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFI   85 (155)
Q Consensus        19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~   85 (155)
                      .++|+.+|        ++++|++++++.  +++++     |..||+.+..+.++++|+||||++..++.++.++.++. .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~v~~~~~GH~~Gs~~~~i~~~~~~il~sGD~~~~~~~~~~~~~~~~-~  196 (459)
T 2i7t_A          120 DMLYTETDLEESMDKIETINFHEVKEVA--GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-I  196 (459)
T ss_dssp             --CCCHHHHHHHGGGEEEECTTCCEEET--TEEEEEEECCSSTTCEEEEEEETTEEEEECCSCCCC-----CCCCCCS-S
T ss_pred             ccccCHHHHHHHHhccEEeCCCCEEEEC--CEEEEEEeCCCccCcEEEEEEECCcEEEEeCCCCCCCCcccCCCCcCC-C
Confidence            35676544        678999999986  56666     65555544443567899999999999888887766544 5


Q ss_pred             CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhh
Q psy13344         86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK  149 (155)
Q Consensus        86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~  149 (155)
                      ++|+||+||||+++.|+++.+++++|.+.|.+++++||+|+||+|++||+|||+++|+++|+++
T Consensus       197 ~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~  260 (459)
T 2i7t_A          197 KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNH  260 (459)
T ss_dssp             CCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHHHHHHhc
Confidence            8999999999999999988899999999999999999999999999999999999999999764

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10

Probab=99.83  E-value=2.3e-20  Score=169.21  Aligned_cols=125  Identities=22%  Similarity=0.375  Sum_probs=102.9

Q ss_pred             CCCCCCC--------ceecCCceeccC--CCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCcc--
Q psy13344         20 PMFPFHE--------TKIKYDEYGNHS--SWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL--   81 (155)
Q Consensus        20 p~yt~~D--------~~v~Y~q~~~l~--~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l--   81 (155)
                      |+|+..|        ++++|++++++.  ..+++++     | +|+++|.+. .++.+|+||||++..+++++.++++  
T Consensus       117 ~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~-~~~~~IvytGD~~~~~~~~l~~~~~L~  195 (717)
T 2i7x_A          117 NKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCIS-TYSEKLVYAKRWNHTRDNILNAASILD  195 (717)
T ss_dssp             CCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEE-CSSCEEEECSSCCSSCCSSCCCCTTBC
T ss_pred             ccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEE-eCCCEEEEECCCCCCcccccCcccccc
Confidence            4666654        679999999982  1257776     5 455556665 4668999999999999998887653  


Q ss_pred             ------CCCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344         82 ------DRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW  146 (155)
Q Consensus        82 ------~~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~  146 (155)
                            ..+.++|+||+||||+.+.|+++ ++.++|.+.|.+++++||+||||+|++||+|||+++|.++|
T Consensus       196 ~~g~~l~~l~~~D~LI~EsTy~~~~h~~~-~~~~~l~~~i~~~l~~~G~VlIp~fa~gR~qell~~l~~~~  265 (717)
T 2i7x_A          196 ATGKPLSTLMRPSAIITTLDRFGSSQPFK-KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELL  265 (717)
T ss_dssp             TTSCBCSTTSSCSEEEECCSCCCCSSCHH-HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred             ccchhHHhccCCcEEEEcCCCCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEeccchHHHHHHHHHHHhh
Confidence                  34568999999999999998765 46779999999999999999999999999999999999998

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*

Probab=99.82  E-value=8.5e-20  Score=163.59  Aligned_cols=130  Identities=22%  Similarity=0.279  Sum_probs=106.8

Q ss_pred             CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCC
Q psy13344         19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDR   83 (155)
Q Consensus        19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~   83 (155)
                      .+.|+.+|        ++++|++++++. .+++++     |..||+.+....++.  +|+||||++..+++++.+++.+ 
T Consensus       305 ~~~~~~~~~~~~~~~~~~l~~g~~~~l~-ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-  382 (651)
T 3af5_A          305 DPLYRPRDIKEVIKHTITLDYGEVRDIS-PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAK-  382 (651)
T ss_dssp             CCSSCHHHHHHHHHTEEECCTTCCEEEE-TTEEEEEEECSSSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCB-
T ss_pred             CCCCCHHHHHHhhhcEEEeCCCCEEEec-CCEEEEEecCCCCcCcEEEEEEECCCceEEEEeCCCCCCccccccccccc-
Confidence            45676543        578999999993 256666     665665444434556  8999999999998888766443 


Q ss_pred             CCCCcEEEEcCCCCCcC--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344         84 FIRPTVVITDTMSAIYQ--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD  150 (155)
Q Consensus        84 ~~~~D~LI~EsTyg~~~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~  150 (155)
                      +.++|+||+||||+++.  |+++.+..++|.+.|.+++++||+||||+||+||+|||+.+|+++|++++
T Consensus       383 ~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~~g~vlIp~favgR~qell~~l~~~~~~~~  451 (651)
T 3af5_A          383 FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGG  451 (651)
T ss_dssp             CSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeccCccHHHHHHHHHHHhhhhcC
Confidence            36899999999999988  88888899999999999999999999999999999999999999997664

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.79  E-value=6.7e-19  Score=157.34  Aligned_cols=130  Identities=23%  Similarity=0.320  Sum_probs=106.5

Q ss_pred             CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCC
Q psy13344         19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDR   83 (155)
Q Consensus        19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~   83 (155)
                      .+.|+..|        +++.|++++++. .+++++     |+.||+.+....++.  +|+||||++...++++.++... 
T Consensus       290 ~~~~~~~~i~~~~~~~~~l~~g~~~~l~-ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-  367 (636)
T 2ycb_A          290 PLPFNVKHVKKSVKHTITLDYGEVTDIA-PDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANR-  367 (636)
T ss_dssp             CCSCCHHHHHHHHHTEEECCTTCCEEEE-TTEEEEEEECCSSTTCEEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCC-
T ss_pred             CCCCCHHHHHHHHhceEEeCCCCEEEec-CCeEEEEeCCCCCCCcEEEEEEECCCeEEEEEECCCCCCcccccCCcccC-
Confidence            35666543        568999999993 256665     766665544444556  8999999999988888776433 


Q ss_pred             CCCCcEEEEcCCCCCcC--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344         84 FIRPTVVITDTMSAIYQ--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD  150 (155)
Q Consensus        84 ~~~~D~LI~EsTyg~~~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~  150 (155)
                      +.++|+||+||||+++.  |+++....++|.+.|.+++++||+||||+|++||+||++.+|+++|++++
T Consensus       368 ~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~  436 (636)
T 2ycb_A          368 FPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGI  436 (636)
T ss_dssp             CSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTS
T ss_pred             CCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCC
Confidence            36899999999999988  88888889999999999999999999999999999999999999998653

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}

Probab=99.78  E-value=1.1e-18  Score=156.18  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=94.4

Q ss_pred             ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      +.+.|++++++. .+++++     |..||+.+....++.  +|+||||++...++++.+++.+ ..++|+||+||||+++
T Consensus       309 ~~l~~g~~i~l~-gg~~v~~~~~GH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLi~EsT~g~~  386 (640)
T 2xr1_A          309 IPLDYEEVTDIA-PDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNA  386 (640)
T ss_dssp             EECCTTCCEEEE-TTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCB-CSCCSEEEEECTTCST
T ss_pred             EEeCCCCEEEec-CCEEEEEEcCCCCcCcEEEEEEECCceEEEEEECCCCCCCcccccccccc-CCCCcEEEECCCCCCC
Confidence            568999999983 256665     766665444444556  9999999999888888766443 3589999999999998


Q ss_pred             C--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344        100 Q--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD  150 (155)
Q Consensus       100 ~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~  150 (155)
                      .  |+++.+..++|.+.|.+++++||+|+||+|++||+||++..|++++++++
T Consensus       387 ~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~favGR~qell~~l~~~~~~~~  439 (640)
T 2xr1_A          387 NAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGL  439 (640)
T ss_dssp             TCCCCCHHHHHHHHHHHC--------CEEEECCTTTHHHHHHHHHHHHHHHTS
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecccchHHHHHHHHHHHHHhCC
Confidence            8  98888899999999999999999999999999999999999999998654

>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}

Probab=99.60  E-value=4.2e-15  Score=124.09  Aligned_cols=116  Identities=11%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             ceecCCceeccCC-----CCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCC
Q psy13344         27 TKIKYDEYGNHSS-----WAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMS   96 (155)
Q Consensus        27 ~~v~Y~q~~~l~~-----~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTy   96 (155)
                      +++.+++++.+.+     .+++++     |+.||+.+..+.++.+|+||||++..++.+..+ .+....++|+||+||||
T Consensus        71 ~~~~~~~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~-~l~~~~~vD~Li~DsT~  149 (336)
T 3zdk_A           71 QALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-ALTLGKQIHTLYLDNTN  149 (336)
T ss_dssp             EECCTTSEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEEECCSCCCCGGGGGCG-GGSSCCCCSEEEECCTB
T ss_pred             EecCCCCeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEEEeCCCCCCcccccch-hhhccCCccEEEEecCC
Confidence            5677778776521     246666     877777766655678999999998766554432 23234689999999999


Q ss_pred             CCcCC--CChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344         97 AIYQQ--ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL  145 (155)
Q Consensus        97 g~~~~--~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~  145 (155)
                      +++.+  +++.+..+++.+.+.++  .||+|+||+|++||.|+++.+..++
T Consensus       150 ~~~~~~~pse~~v~~~l~~~i~~~--~~g~vii~~f~vgR~q~i~~~a~~~  198 (336)
T 3zdk_A          150 CNPALVLPSRQEAAHQIVQLIRKH--PQHNIKIGLYSLGKESLLEQLALEF  198 (336)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHTC--TTSEEEEEECSSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC--CCCcEEEeecchHHHHHHHHHHHHc
Confidence            99764  55666666777766654  4789999999999999999988754

>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}

Probab=99.58  E-value=8.5e-15  Score=123.45  Aligned_cols=114  Identities=10%  Similarity=0.047  Sum_probs=89.4

Q ss_pred             ceecCCceeccCCCCceeE-----EecCceEEEEEe-CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKE-GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ  100 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~-~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~  100 (155)
                      +++++++++++.  +++++     |..|++.+..+. ++++|+||||++..++...  +.++. .++|+||+||||+++.
T Consensus        98 ~~l~~g~~~~ig--~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~--~~l~~-~~~D~Li~EsTy~~~~  172 (367)
T 4b87_A           98 HPLPLDTECIVN--GVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER--SLLAD-QKVHMLYLDTTYCSPE  172 (367)
T ss_dssp             EECCBTSCEEET--TEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG--SGGGT-SCCCEEEECCTTCSTT
T ss_pred             EEeCCCCEEEEC--CEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch--hhhcc-CCCCEEEEecccCCCC
Confidence            567888888886  46666     777777655543 5578999999998766543  34432 4799999999999964


Q ss_pred             --CCChhHHHHHHHHHHHHHHhCCCeE--EEEecccHHHHHHHHHHHHH
Q psy13344        101 --QARRRTRDERLMTNILQTLRNNGNV--LVAVDTAGRVLELTHMLEQL  145 (155)
Q Consensus       101 --~~~~~~~~~~l~~~I~~tl~~gG~V--LIP~fa~GR~qEll~~L~~~  145 (155)
                        ++++++..+++++.+.++++++|++  ++|+|++||.|+++.+++++
T Consensus       173 ~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~  221 (367)
T 4b87_A          173 YTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVL  221 (367)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh
Confidence              5677778888999999999877765  47999999999999998875

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}

Probab=99.57  E-value=4e-15  Score=131.30  Aligned_cols=115  Identities=15%  Similarity=0.128  Sum_probs=90.4

Q ss_pred             ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCC-----CCCcEEEEcCC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF-----IRPTVVITDTM   95 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~-----~~~D~LI~EsT   95 (155)
                      +.+.+++++++.  +++++     | +.||+.+..+.++.+|+||||+....+++..+++++.+     .++|+||+|||
T Consensus       120 ~~v~~g~~~~ig--~~~v~~~~~~H~~pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT  197 (555)
T 3zq4_A          120 NIIGEDDIVKFR--KTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDST  197 (555)
T ss_dssp             EECCTTCCEEET--TEEEEEEEEBCSSSSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECT
T ss_pred             EEeCCCCEEEEC--CEEEEEEeCCCCCcCcEEEEEEECCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCc
Confidence            778899999886  46665     4 66665444444678999999999988877654554333     37899999999


Q ss_pred             CCCcCCCChhHHHHHHHHHHHHHHhC-CCeEEEEecc--cHHHHHHHHHHHHH
Q psy13344         96 SAIYQQARRRTRDERLMTNILQTLRN-NGNVLVAVDT--AGRVLELTHMLEQL  145 (155)
Q Consensus        96 yg~~~~~~~~~~~~~l~~~I~~tl~~-gG~VLIP~fa--~GR~qEll~~L~~~  145 (155)
                      |+.+.+.  ...++++.+.+.+++++ +|+|+||+||  +||+||++..+.++
T Consensus       198 ~~~~~~~--~~se~~v~~~i~~~~~~~~grvii~~fasnv~R~q~il~~a~~~  248 (555)
T 3zq4_A          198 NSENPEF--TMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQN  248 (555)
T ss_dssp             TTTCCSC--CCCHHHHHHHHHHHHHHCCSCEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             ccCCCCC--CCCHHHHHHHHHHHHHhCCCEEEEEEChhHHHHHHHHHHHHHHH
Confidence            9997543  34567888899999886 9999999999  99999999998764

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*

Probab=99.35  E-value=3.2e-12  Score=112.70  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccC-CCccCCC-----CCCcEEEEcC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLN-GCVLDRF-----IRPTVVITDT   94 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~-~~~l~~~-----~~~D~LI~Es   94 (155)
                      +.+++++++++.+ +++++     | +.||+.+..+.++.+|+||||+....+++.. +.++..+     .++|+||+||
T Consensus       134 ~~v~~g~~~~lg~-~~~v~~~~~~H~~~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~Es  212 (562)
T 3bk2_A          134 KEISPDDRIQVGR-YFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADA  212 (562)
T ss_dssp             EEECTTCEEEETT-TEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEEC
T ss_pred             EEECCCCEEEeCC-CEEEEEEECCCCCcccEEEEEEECCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecc
Confidence            7889999999872 36666     4 5555544443466899999999988777653 2332111     3799999999


Q ss_pred             CCCCcCCCChhHHHHHHHHHHHHHHh-CCCeEEEEecc--cHHHHHHHHHHHHH
Q psy13344         95 MSAIYQQARRRTRDERLMTNILQTLR-NNGNVLVAVDT--AGRVLELTHMLEQL  145 (155)
Q Consensus        95 Tyg~~~~~~~~~~~~~l~~~I~~tl~-~gG~VLIP~fa--~GR~qEll~~L~~~  145 (155)
                      ||+.+.+..  ..+..+.+.+.++++ .+|+++||+|+  ++|+||++..+.++
T Consensus       213 T~~~~~g~~--~~e~~v~~~l~~~~~~~~grvii~~fas~~~r~q~il~~a~~~  264 (562)
T 3bk2_A          213 TNAERPGYT--PSEMEIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKY  264 (562)
T ss_dssp             TTTTCCSCC--CCHHHHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCC--ChHHHHHHHHHHHHHhCCCEEEEEEccccchHHHHHHHHHHHh
Confidence            999765432  233456667777765 68999999999  99999999988765

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10

Probab=98.98  E-value=8e-10  Score=93.36  Aligned_cols=111  Identities=10%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCcc-CCCCCCcEEEEcCCCCCc
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-DRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l-~~~~~~D~LI~EsTyg~~   99 (155)
                      +.+++++++++.  +++++     | +.||+.+..+.++.+|+||||+.......-....+ ....++|+||+||||+.+
T Consensus       145 ~~~~~g~~~~~g--~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~  222 (429)
T 2az4_A          145 IGLNKNDVIKVG--EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISF  222 (429)
T ss_dssp             EEECTTCEEEET--TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGS
T ss_pred             EEeCCCCeEEEC--CEEEEEEECCCCChhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCc
Confidence            778899999887  46665     7 77666555545678999999998654331000000 112489999999999874


Q ss_pred             C------CCChhHHHHHHHHHHHHHHhCC-CeEEEEecc---cHHHHHHH
Q psy13344        100 Q------QARRRTRDERLMTNILQTLRNN-GNVLVAVDT---AGRVLELT  139 (155)
Q Consensus       100 ~------~~~~~~~~~~l~~~I~~tl~~g-G~VLIP~fa---~GR~qEll  139 (155)
                      .      +++...+.+++.+.+.++++++ ++++||.+.   ++|+|+++
T Consensus       223 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~a  272 (429)
T 2az4_A          223 PEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKII  272 (429)
T ss_dssp             CCCCCCTTBCCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHHH
Confidence            3      1222345567778888887764 558999998   89999993

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A

Probab=97.22  E-value=0.00044  Score=54.14  Aligned_cols=100  Identities=7%  Similarity=-0.030  Sum_probs=56.8

Q ss_pred             eecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCC
Q psy13344         28 KIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA  102 (155)
Q Consensus        28 ~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~  102 (155)
                      .++.++.+++.  +++++     |-.++..++.+.++++++|+||.+..++..+.-.  .. .++|+||+|+||......
T Consensus       122 ~~~~g~~~~~g--~~~v~~~~~~H~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~l--~~-~~~Dlli~e~t~~~~~~~  196 (258)
T 3g1p_A          122 TVEPFVVFDLQ--GLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFL--RN-NQPQVMVMDCSHPPRADA  196 (258)
T ss_dssp             ECCTTCCEEET--TEEEEEEECCSSSCCEEEEEECSSCEEEEECSCSSCCHHHHHHH--HH-TCCSEEEEECCBSSCSSC
T ss_pred             ccCCCCeEEEC--CEEEEEEECCCCCCceEEEEEeCCcEEEEECCCCCCCHHHHHHH--Hh-CCCCEEEEeCCCCCcccc
Confidence            55666777776  46665     5455554444456789999999986654333211  10 479999999999764311


Q ss_pred             C-hhHHHHHHHHHHHHHHhCCCeEEEEecccHHH
Q psy13344        103 R-RRTRDERLMTNILQTLRNNGNVLVAVDTAGRV  135 (155)
Q Consensus       103 ~-~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~  135 (155)
                      . .....++..+.+++.   +-+.+||+--.-+.
T Consensus       197 ~~~H~~~~~a~~~~~~~---~~k~lil~H~s~~~  227 (258)
T 3g1p_A          197 PRNHCDLNTVLALNQVI---RSPRVILTHISHQF  227 (258)
T ss_dssp             CSSSCBHHHHHHHHHHH---CCSCEEEESCCHHH
T ss_pred             CCCCCCHHHHHHHHHHc---CCCEEEEECccCcc
Confidence            1 111222323333322   34556777655544

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A

Probab=97.08  E-value=0.0019  Score=50.29  Aligned_cols=33  Identities=6%  Similarity=-0.114  Sum_probs=23.8

Q ss_pred             ceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        59 ~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      +++|+|+||.+..   ..   .  ...++|+||+|+||.+.
T Consensus       182 g~~i~ysgDt~~~---~~---~--~~~~~d~li~e~t~~~~  214 (280)
T 2e7y_A          182 KKVLTISGDSLAL---DP---E--EIRGTELLIHECTFLDA  214 (280)
T ss_dssp             EEEEEECCSCSSC---CH---H--HHTTCSCEEEECCBC--
T ss_pred             CCEEEEECCCChH---HH---H--hhcCCCEEEEeCCcCCh
Confidence            4789999998865   11   1  23579999999999865

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9

Probab=96.90  E-value=0.0025  Score=49.68  Aligned_cols=65  Identities=11%  Similarity=0.022  Sum_probs=41.5

Q ss_pred             ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      ..+.-++.+++.  +++++     |-.|+..+....++++|+|+||....++ +.     +...++|+||+|+||...
T Consensus       136 ~~~~~g~~~~~g--~~~v~~~~~~H~~~~~~~~i~~~~~~i~~~GD~~~~~~-~~-----~~~~~~d~li~e~~~~~~  205 (268)
T 1zkp_A          136 IPYNPEETLQIG--PFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPE-FI-----PFTKDADLFICECNMYAH  205 (268)
T ss_dssp             EECCTTSCEEET--TEEEEEEECCSSSCCEEEEEEETTEEEEECCSCCCCTT-HH-----HHHTTCSEEEEECCBCTT
T ss_pred             EEecCCCeEEEC--CEEEEEEECCCCCCceEEEEEECCeEEEEeCCCCCCHH-HH-----HHHcCCCEEEEECCCCcc
Confidence            345556666665  45555     4444544444346689999999886432 11     112579999999999764

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7

Probab=96.63  E-value=0.002  Score=51.04  Aligned_cols=36  Identities=14%  Similarity=-0.002  Sum_probs=26.9

Q ss_pred             CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      ++++|+|+||.+..+. +.     +.+.++|+||+|+||++.
T Consensus       204 ~g~~i~~sgDt~~~~~-~~-----~~~~~~D~li~E~t~~~~  239 (306)
T 2cbn_A          204 PGKALAIFGDTGPCDA-AL-----DLAKGVDVMVHEATLDIT  239 (306)
T ss_dssp             CCCEEEECCSCBSCST-HH-----HHHTTCSEEEEECCBCGG
T ss_pred             CCCEEEEeCCCCCHHH-HH-----HHhcCCCEEEEECcCChh
Confidence            4579999999986542 21     123579999999999874

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*

Probab=96.58  E-value=0.0021  Score=51.37  Aligned_cols=37  Identities=11%  Similarity=0.078  Sum_probs=27.3

Q ss_pred             CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344         58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ  100 (155)
Q Consensus        58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~  100 (155)
                      ++++|+|+||.+..+. +.     +.+.++|+||+|+||++..
T Consensus       202 ~g~~i~~sgDt~~~~~-~~-----~~~~~~D~li~E~t~~~~~  238 (320)
T 1y44_A          202 KGRSVVFSGDTRVSDK-LK-----ELARDCDVMVHEATFAKED  238 (320)
T ss_dssp             CCCEEEECCSCBCCHH-HH-----HHTTTCSEEEEECCBCTTC
T ss_pred             CCCEEEEeCCCCCHHH-HH-----HHhCCCCEEEEeccCCcch
Confidence            4579999999886542 22     1235899999999998753

>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}

Probab=94.71  E-value=0.29  Score=37.66  Aligned_cols=59  Identities=10%  Similarity=-0.056  Sum_probs=40.0

Q ss_pred             ceecCCc-eeccCCCCceeE-----Eec-----------CceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcE
Q psy13344         27 TKIKYDE-YGNHSSWAYGEE-----IFT-----------GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTV   89 (155)
Q Consensus        27 ~~v~Y~q-~~~l~~~~~~vt-----~lG-----------Ga~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~   89 (155)
                      ..+..++ .+++.  +++|+     |--           +..|++.. ++++|+|+||.+..++       +..+.++|+
T Consensus       108 ~~l~~g~~~~~~g--~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~-~g~~i~~~GDt~~~~~-------~~~l~~~Dv  177 (235)
T 3kl7_A          108 KVLKNGDTDTSIS--YMKIEAVPAYNTTPGRDKYHPRHRDNGYILTF-DGLRVYIAGDTEDIPE-------MKDLKDIDI  177 (235)
T ss_dssp             EECCTTCEECCST--TCEEEEEECCCCSTTGGGTSCTTTSEEEEEEE-TTEEEEECCSCCSCGG-------GGGCCSCSE
T ss_pred             EEecCCCEEEEEC--CEEEEEEEeecCCCccccccCCCCceEEEEEe-CCeEEEEECCCCchhh-------HHhhcCCCE
Confidence            4566677 77776  46666     211           35676664 6799999999876542       223457999


Q ss_pred             EEEcCC
Q psy13344         90 VITDTM   95 (155)
Q Consensus        90 LI~EsT   95 (155)
                      +++++.
T Consensus       178 ~il~~~  183 (235)
T 3kl7_A          178 AFLPVN  183 (235)
T ss_dssp             EEEECC
T ss_pred             EEECCC
Confidence            999985

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*

Probab=94.03  E-value=0.076  Score=42.04  Aligned_cols=63  Identities=16%  Similarity=0.028  Sum_probs=39.3

Q ss_pred             ceecCCceeccCC--CCceeE-----Ee-cCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCC
Q psy13344         27 TKIKYDEYGNHSS--WAYGEE-----IF-TGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAI   98 (155)
Q Consensus        27 ~~v~Y~q~~~l~~--~~~~vt-----~l-GGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~   98 (155)
                      +.++.++++++.+  ..++|+     |- .++..+...    +++|+||.+..++.++.     .+.++|+||+|+++..
T Consensus       165 ~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~----~~~y~gDt~~~~~~~~~-----~~~~~Dlli~e~~~~~  235 (293)
T 3md7_A          165 HDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG----SVVYCTDVSAFPEQSLQ-----YIKDADVLIIGALQYR  235 (293)
T ss_dssp             EECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET----TEEEECSCSBCCGGGHH-----HHTTCSEEEEECCCSS
T ss_pred             EEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe----EEEEECCCCCCCHHHHH-----HhcCCCEEEEeCccCC
Confidence            5666678888763  116666     43 234333331    79999998744333332     2358999999998644

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A

Probab=93.92  E-value=0.031  Score=45.58  Aligned_cols=65  Identities=8%  Similarity=-0.003  Sum_probs=41.3

Q ss_pred             ceecCCceecc---CCCCceeE---Ee---------------cCc-eEEEEE-eCceEEEEEeCCCCCCCCccCCCccCC
Q psy13344         27 TKIKYDEYGNH---SSWAYGEE---IF---------------TGP-IWKIVK-EGEEEIVYGVDFNLKKERHLNGCVLDR   83 (155)
Q Consensus        27 ~~v~Y~q~~~l---~~~~~~vt---~l---------------GGa-~~~i~~-~~~~~IvytGD~~~~~~~~l~~~~l~~   83 (155)
                      +.+.-++++++   .  +++|+   .-               +.+ .+.+.. .++++|+|+||.+..++.++     +.
T Consensus       140 ~~i~~g~~~~i~~~~--~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~~-----~~  212 (321)
T 3jxp_A          140 NRIELEGSFVIDACP--NLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLL-----AM  212 (321)
T ss_dssp             EECCSSSCEECTTST--TEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHHH-----HH
T ss_pred             EEcCCCCeEEeccCC--CeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCHHHH-----HH
Confidence            45556777777   4  56776   21               223 355542 46799999999875433322     12


Q ss_pred             CCCCcEEEEcCCCCC
Q psy13344         84 FIRPTVVITDTMSAI   98 (155)
Q Consensus        84 ~~~~D~LI~EsTyg~   98 (155)
                      +.++|+||+|+|+..
T Consensus       213 ~~~~D~li~eat~~~  227 (321)
T 3jxp_A          213 MHGADCLLVDGTLWE  227 (321)
T ss_dssp             HHHCSEEEEECCCSS
T ss_pred             hcCCCEEEEeCCCCC
Confidence            357999999998754

>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4

Probab=91.93  E-value=0.21  Score=38.19  Aligned_cols=70  Identities=7%  Similarity=0.006  Sum_probs=39.8

Q ss_pred             ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe
Q psy13344         50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV  129 (155)
Q Consensus        50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~  129 (155)
                      .+|.+. .++++|+|+||.+..+..-+    +..+.++|++|+|+.  ...|..-+ ...++++.    +  +-+.+||+
T Consensus       107 ~g~~i~-~~g~~i~~~GDt~~~~~~~~----~~~~~~~Dvlil~~g--~~~h~~~~-~a~~~~~~----~--~~k~vi~~  172 (220)
T 1vjn_A          107 IVFVFE-GEGIKVCHLGDLGHVLTPAQ----VEEIGEIDVLLVPVG--GTYTIGPK-EAKEVADL----L--NAKVIIPM  172 (220)
T ss_dssp             EEEEEE-ETTEEEEECTTCCSCCCHHH----HHHHCCCSEEEEECC--SSSSCCHH-HHHHHHHH----T--TCSEEEEE
T ss_pred             EEEEEE-ECCeEEEEeCCCCCcchHHH----HHhhCCCCEEEEcCC--CcCcCCHH-HHHHHHHh----c--CCCEEEEE
Confidence            446555 46799999999887653111    122347999999983  23333222 22233332    2  45778887


Q ss_pred             cccH
Q psy13344        130 DTAG  133 (155)
Q Consensus       130 fa~G  133 (155)
                      --..
T Consensus       173 H~~~  176 (220)
T 1vjn_A          173 HYKT  176 (220)
T ss_dssp             SCCC
T ss_pred             eccc
Confidence            5433

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}

Probab=89.65  E-value=1  Score=37.10  Aligned_cols=38  Identities=11%  Similarity=-0.095  Sum_probs=25.0

Q ss_pred             ceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344         59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ  100 (155)
Q Consensus        59 ~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~  100 (155)
                      +++|+|+||-...   .. ..-.+...++|+||+|+||.+..
T Consensus       243 g~~v~~~GDT~~~---~~-~~~~~~~~~~Dlli~Eat~~~~~  280 (368)
T 3zwf_A          243 GRKICILGDCSGV---VG-DGGVKLCFEADLLIHEATLDDAQ  280 (368)
T ss_dssp             CCEEEEECSCSEE---CS-SHHHHHTTTCSEEEEECCSCGGG
T ss_pred             ceEEEEEecCCcc---cc-hhHHHHhcCCCEEEEecCCChHH
Confidence            6899999994421   01 11112246899999999998743

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=88.43  E-value=0.36  Score=33.59  Aligned_cols=63  Identities=16%  Similarity=0.141  Sum_probs=46.4

Q ss_pred             CCcEEEEcCCCCCcCCCChhH-----HHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHh
Q psy13344         86 RPTVVITDTMSAIYQQARRRT-----RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN  148 (155)
Q Consensus        86 ~~D~LI~EsTyg~~~~~~~~~-----~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~  148 (155)
                      ..|++++...+....+.....     ....+++.+.+.|+.||.+++-.+.....++++..+..+|+.
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK  155 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhh
Confidence            679999977654332221111     126788889999999999999888888889998888887643

>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*

Probab=85.44  E-value=2.3  Score=34.53  Aligned_cols=41  Identities=7%  Similarity=-0.044  Sum_probs=25.1

Q ss_pred             ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCC
Q psy13344         50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM   95 (155)
Q Consensus        50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsT   95 (155)
                      ..|++. .++++|+|+||....++...-+   .. .++|++++...
T Consensus       210 ~g~~i~-~~g~~i~~sGDt~~~~~~~~i~---~~-~~~Dv~il~~g  250 (360)
T 2wyl_A          210 VNYLFK-TPGGSLYHSGDSHYSNYYAKHG---NE-HQIDVALGSYG  250 (360)
T ss_dssp             EEEEEE-ETTEEEEECTTCCCCTTHHHHH---HH-SCCCEEEEEBC
T ss_pred             EEEEEE-ECCcEEEEeCCCCcCHHHHHHh---hC-CCCCEEEecCC
Confidence            345555 4679999999987654321100   01 26899998654

>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}

Probab=84.73  E-value=2.9  Score=34.26  Aligned_cols=41  Identities=10%  Similarity=0.002  Sum_probs=25.3

Q ss_pred             ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCC
Q psy13344         50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM   95 (155)
Q Consensus        50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsT   95 (155)
                      ..|++. .++++|+|+||....++...-.   .. .++|++++...
T Consensus       235 ~g~~i~-~~g~~i~~sGDt~~~~~~~~i~---~~-~~~Dv~il~~g  275 (379)
T 3bv6_A          235 VNYLIE-TSGGSVYHSGDSHYSNYYAKHG---ND-YQIDVALLSYG  275 (379)
T ss_dssp             EEEEEE-ETTEEEEECTTCCCCTTHHHHH---HH-SCCSEEEEEBC
T ss_pred             EEEEEE-eCCeEEEEeCCCCccHHHHHHh---hc-CCCCEEEecCC
Confidence            445555 4679999999988654321100   01 26899998654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=84.65  E-value=0.45  Score=35.34  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CCcEEEEcCCCCCcCCCCh-----hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHH
Q psy13344         86 RPTVVITDTMSAIYQQARR-----RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR  147 (155)
Q Consensus        86 ~~D~LI~EsTyg~~~~~~~-----~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~  147 (155)
                      ..|+++.+.......+...     ....+..++.+.+.|+.||+.++-+|.....++++..|..+|.
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~  157 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFS  157 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcC
Confidence            6899999764322211111     1223456677788999999999999999998999888876653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=84.52  E-value=3  Score=30.82  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=40.2

Q ss_pred             CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344         85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL  145 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~  145 (155)
                      ...|++++....         . .. +++.+.+.|+.||.+++-+.......+++..|.+.
T Consensus       121 ~~~D~v~~~~~~---------~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          121 PLPEAVFIGGGG---------S-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH  170 (204)
T ss_dssp             CCCSEEEECSCC---------C-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcc---------c-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence            468999976622         1 23 88889999999999999999999999988888764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=84.37  E-value=0.72  Score=33.28  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=43.1

Q ss_pred             CCcEEEEcCCCCCcCCCChh-----HHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHH
Q psy13344         86 RPTVVITDTMSAIYQQARRR-----TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR  147 (155)
Q Consensus        86 ~~D~LI~EsTyg~~~~~~~~-----~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~  147 (155)
                      ..|+++++.......+....     .....+++.+.+.|+.||.+++-.+......+++..+...+.
T Consensus        97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~  163 (196)
T 2nyu_A           97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQ  163 (196)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEE
T ss_pred             CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhc
Confidence            68999986533222221111     112467888899999999999999988888888888877654

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A

Probab=83.50  E-value=5.9  Score=30.33  Aligned_cols=43  Identities=7%  Similarity=-0.089  Sum_probs=26.7

Q ss_pred             ceecCCceeccCCCCceeE------EecCceEEEEEeCce----EEEEEeCCCCC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKEGEE----EIVYGVDFNLK   71 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~~~~----~IvytGD~~~~   71 (155)
                      +.+.-++.+++.  +.+++      |-.|++.+....++.    +++|+||....
T Consensus       154 ~~~~~g~~~~~g--~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~  206 (294)
T 3m8t_A          154 RAVKEGDRVTLG--DTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVA  206 (294)
T ss_dssp             EEECTTCEEEET--TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCT
T ss_pred             eEeCCCCEEEeC--CEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCccCC
Confidence            567777888877  34444      555555544322223    79999998743

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=83.31  E-value=3.5  Score=33.17  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCC-CeEEEEecc--cHHHHHHHHHHHHHHHh
Q psy13344         85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNN-GNVLVAVDT--AGRVLELTHMLEQLWRN  148 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~g-G~VLIP~fa--~GR~qEll~~L~~~~~~  148 (155)
                      ..+|+++.+-.-- .-+... ..+.-.|++.+.++|+.| |+.++=+|.  -+-.+|++..|..+|..
T Consensus       139 ~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~  205 (277)
T 3evf_A          139 VKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG  205 (277)
T ss_dssp             CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred             CCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCC
Confidence            4689999975433 222211 122235688899999999 999999999  88999999999999865

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=83.20  E-value=3.9  Score=29.66  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344         85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL  145 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~  145 (155)
                      ...|++++.....         ...++++.+.+.|+.||.+++-........++...|.+.
T Consensus       107 ~~~D~i~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          107 PDPDRVFIGGSGG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH  158 (204)
T ss_dssp             CCCSEEEESCCTT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence            4689999877553         234788889999999999999888878888877777643

>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}

Probab=82.06  E-value=0.58  Score=36.26  Aligned_cols=43  Identities=14%  Similarity=-0.058  Sum_probs=27.1

Q ss_pred             ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCC
Q psy13344         50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMS   96 (155)
Q Consensus        50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTy   96 (155)
                      +.|++...++++|+|+||-+..++..    .+....++|++|+++..
T Consensus       151 ~g~~i~~~~~~~i~~~GDt~~~~~~~----~~~~~~~~Dv~il~~g~  193 (264)
T 3rpc_A          151 MGVIFEAADEPTVYLVGDTVWTSDVE----KALLRFDPNVIIMNTGY  193 (264)
T ss_dssp             CEEEEECTTSCCEEECCSCCSCHHHH----HHHHHHCCSEEEEECSC
T ss_pred             EEEEEEeCCccEEEEECCcCchHHHH----HHHHHhCCCEEEEecCc
Confidence            45666642268999999987654311    00000258999999974

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=81.65  E-value=0.4  Score=34.88  Aligned_cols=61  Identities=10%  Similarity=0.159  Sum_probs=41.2

Q ss_pred             CCcEEEEcCCCCCcCC--CChh---HHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344         86 RPTVVITDTMSAIYQQ--ARRR---TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW  146 (155)
Q Consensus        86 ~~D~LI~EsTyg~~~~--~~~~---~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~  146 (155)
                      ..|+++++........  .+..   .....++..+.+.|+.||.+++.++.....++++..|..+|
T Consensus       106 ~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f  171 (201)
T 2plw_A          106 KIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMF  171 (201)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTE
T ss_pred             cccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            6799998764322111  0011   11234777888999999999998888777888888777654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=80.26  E-value=3.6  Score=33.20  Aligned_cols=64  Identities=14%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCC--CeEEEEecc--cHHHHHHHHHHHHHHHhh
Q psy13344         85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNN--GNVLVAVDT--AGRVLELTHMLEQLWRNK  149 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~g--G~VLIP~fa--~GR~qEll~~L~~~~~~~  149 (155)
                      .++|+++.+-.-- +-+... ..+.-.|++...++|+.|  |+.++=+|.  -+-.+|++..|..+|..-
T Consensus       155 ~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V  223 (282)
T 3gcz_A          155 IPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGG  223 (282)
T ss_dssp             CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred             CCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCE
Confidence            5789999986543 222211 123335788889999999  999999999  889999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2i7xa1	514	d.157.1.10 (A:1-422,A:626-717) Cleavage factor two	2e-13

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 17  KQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHL 76
                  + +       Y   +  AY   +  G     +    E++VY   +N  ++  L
Sbjct: 129 DHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNIL 188

Query: 77  NGC--------VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
           N           L   +RP+ +IT        Q   + R +     + + L ++G+V++ 
Sbjct: 189 NAASILDATGKPLSTLMRPSAIITTLDRFGSSQ-PFKKRSKIFKDTLKKGLSSDGSVIIP 247

Query: 129 VDTAGRVLELTHMLEQLWR 147
           VD +G+ L+L   + +L  
Sbjct: 248 VDMSGKFLDLFTQVHELLF 266

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2i7xa1	514	Cleavage factor two protein 2, CFT2 {Baker's yeast	99.93
d2dkfa1	431	Putative RNA-degradation protein TTHA0252 {Thermus	99.87
d2i7ta1	451	Cleavage and polyadenylation specificity factor su	99.64
d2az4a1	183	Hypothetical protein EF2904 {Enterococcus faecalis	98.46
d1zkpa1	244	Hypothetical protein BA1088 (BAS1016) {Bacillus an	97.06
d2e7ya1	280	Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax	93.42
d2cbna1	305	Ribonuclease Z (RNase Z) {Escherichia coli [TaxId:	86.98
d1y44a1	307	Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId	83.89
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	81.68

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.8e-26  Score=197.47  Aligned_cols=131  Identities=18%  Similarity=0.308  Sum_probs=111.0

Q ss_pred             CCCCCCCCC--------ceecCCceeccCCC--CceeE-----EecCce-EEEEEeCceEEEEEeCCCCCCCCccCCCcc
Q psy13344         18 QFPMFPFHE--------TKIKYDEYGNHSSW--AYGEE-----IFTGPI-WKIVKEGEEEIVYGVDFNLKKERHLNGCVL   81 (155)
Q Consensus        18 ~~p~yt~~D--------~~v~Y~q~~~l~~~--~~~vt-----~lGGa~-~~i~~~~~~~IvytGD~~~~~~~~l~~~~l   81 (155)
                      ..|+|+.+|        .+++|+|++++.+.  ++.++     |+.||+ |.|. .++.+|||||||++.++++++++++
T Consensus       115 ~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa~~~I~-~~~~~IvytGD~~~~~~~~l~~~~~  193 (514)
T d2i7xa1         115 DTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCIS-TYSEKLVYAKRWNHTRDNILNAASI  193 (514)
T ss_dssp             TTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEE-CSSCEEEECSSCCSSCCSSCCCCTT
T ss_pred             ccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCceEEEEE-ECCeEEEEEeccCCCCCccCCCccc
Confidence            458899988        78999999998643  45566     555555 6555 5678999999999999999998875


Q ss_pred             CC-------CCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhh
Q psy13344         82 DR-------FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK  149 (155)
Q Consensus        82 ~~-------~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~  149 (155)
                      +.       ...+|.+++|+||+.+.++++.+++++|.+.|.+++++||+||||+||+||+|||+++|+++|++.
T Consensus       194 ~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~gG~VlIP~fa~gR~QEil~~l~~~~~~~  268 (514)
T d2i7xa1         194 LDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFES  268 (514)
T ss_dssp             BCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccCCCEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHhCCCEEEEEEcCchHHHHHHHHHHHHHHHH
Confidence            32       135678889999999999999999999999999999999999999999999999999999999764

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Putative RNA-degradation protein TTHA0252
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=2.8e-22  Score=167.60  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=110.8

Q ss_pred             CCCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCC
Q psy13344         18 QFPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF   84 (155)
Q Consensus        18 ~~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~   84 (155)
                      ..|+|+.+|        .++.|++++++.  +++++     |+.|+++..++.++++|+||||+++.++.+++++.++  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~v~~~~~gH~~g~~~~~i~~~~~~i~ytgD~~~~~~~~l~~~~~~--  177 (431)
T d2dkfa1         102 DEPFFGPEDVEEALGHLRPLEYGEWLRLG--ALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLP--  177 (431)
T ss_dssp             SSCSSCHHHHHHHHTTEEECCSSCCEESS--SCEEEEEECCSSTTCEEEEEEETTEEEEECCSCCCTTSSSSCCCCBC--
T ss_pred             ccccCCHHHHHHHHhhcccccCCCeEEEC--CEEEEEEecCCCCccEEEEEEECCeeeeecCCcCcCCCccCCCchhh--
Confidence            346777766        678899999987  46665     7777776666567899999999999999999988765  


Q ss_pred             CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhh
Q psy13344         85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK  149 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~  149 (155)
                      +.+|+||+|||||++.++++...+.++.+.|.+++++||+|+||+||+||+||++.+|+++|...
T Consensus       178 ~~~d~li~e~t~~~~~~~~~~~~~~~~~~~i~~~~~~~g~vli~~fa~gr~qeil~~l~~~~~~~  242 (431)
T d2dkfa1         178 PLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRL  242 (431)
T ss_dssp             CCCSEEEEECTTSSCCCCCHHHHHHHHHHHHHHHHHTTCEEEEEECTTHHHHHHHHHHHTTTTSS
T ss_pred             hhccccccccccCCCCcccchHHHHHHHHHHHHHHhcCCeEEEEeccchHHHHHHHHHHHhcccc
Confidence            47999999999999998888888899999999999999999999999999999999999887654

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-15  Score=125.20  Aligned_cols=120  Identities=21%  Similarity=0.416  Sum_probs=100.3

Q ss_pred             ceecCCceeccCCCCceeE------EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ  100 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~  100 (155)
                      ..+.|+++..+.  .+.|+      ++|+++|.+. .++++++||||+++.+.+++.....+. .++|+|++|+|++...
T Consensus       128 ~~~~~~~~~~~~--~~~v~~~~~~H~~Gs~~~~i~-~~~~~i~~tgD~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  203 (451)
T d2i7ta1         128 ETINFHEVKEVA--GIKFWCYHAGHVLGAAMFMIE-IAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHI  203 (451)
T ss_dssp             EEECTTCCEEET--TEEEEEEECCSSTTCEEEEEE-ETTEEEEECCSCCCC-----CCCCCCS-SCCSEEEEECTTTTCC
T ss_pred             ceecCCceEeeC--CEEEEEeccCCCCCceeEEee-cCCceEEecCCCCCCCCcccccccccc-cccceeEeecccCccc
Confidence            778899998876  57776      5555556665 577999999999999999988877665 5899999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344        101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD  150 (155)
Q Consensus       101 ~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~  150 (155)
                      +++..+.+.++.+.+..+++++++++||+++.||.||++..|.++|++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~g~~~e~l~~l~~~~~~~~  253 (451)
T d2i7ta1         204 HEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHP  253 (451)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHCG
T ss_pred             cccchhHHhhhhHHHhHHHhcCCcEEEEEecchHHHHHHHHHHHHhhccc
Confidence            98888899999999999999999999999999999999999999997753

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Hypothetical protein EF2904
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.46  E-value=2e-08  Score=74.05  Aligned_cols=72  Identities=10%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             ceecCCceeccCCCCceeE------EecCceEEEEEeCceEEEEEeCCCCCCCCccC-CCccCCCCCCcEEEEcCCCCCc
Q psy13344         27 TKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLN-GCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~-~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      +.+.+++++++.  +++++      |+.||.++.++.++++|+||||+......--. ........++|+||+|+|+.++
T Consensus        90 ~~i~~~~~~~ig--~~~v~~~~~~h~~pgs~~~~i~~~~~~i~ysGD~~~~g~~~~~~~~~~~~~~~~DlLI~E~T~~~~  167 (183)
T d2az4a1          90 IGLNKNDVIKVG--EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISF  167 (183)
T ss_dssp             EEECTTCEEEET--TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGS
T ss_pred             EEecCCCceEEC--CEEEEeecccccccccceeeeeccCceEEEcCcccccCCCCchhhhHHhhCCCCCEEEECCCCCCC
Confidence            789999999997  56666      56667766665677999999998643221111 1111223689999999998765


Q ss_pred             C
Q psy13344        100 Q  100 (155)
Q Consensus       100 ~  100 (155)
                      .
T Consensus       168 p  168 (183)
T d2az4a1         168 P  168 (183)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: YhfI-like
domain: Hypothetical protein BA1088 (BAS1016)
species: Bacillus anthracis [TaxId: 1392]

Probab=97.06  E-value=0.00044  Score=51.17  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCC
Q psy13344         27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ  101 (155)
Q Consensus        27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~  101 (155)
                      ..++.++.+++.  +..++     |-..+..+..+.++++++|+||-...++ .     .+-..++|+||.|+++.....
T Consensus       112 ~~~~~~~~~~~~--~~~v~~~~~~h~~~~~~~~i~~~~~~~~~~gDt~~~~~-~-----~~~~~~~D~li~e~~~~~~~~  183 (244)
T d1zkpa1         112 IPYNPEETLQIG--PFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPE-F-----IPFTKDADLFICECNMYAHQE  183 (244)
T ss_dssp             EECCTTSCEEET--TEEEEEEECCSSSCCEEEEEEETTEEEEECCSCCCCTT-H-----HHHHTTCSEEEEECCBCTTSC
T ss_pred             eecccceEEEEe--ccceeeeeecccccccceeeccccccccccccccccch-h-----hhhhcccceeEEeecccchhh
Confidence            667777777776  45555     4444554444457799999999654322 1     122357999999998765332


Q ss_pred             CCh--hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344        102 ARR--RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW  146 (155)
Q Consensus       102 ~~~--~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~  146 (155)
                      ...  ....++.++.+++ ++.+..++......++-++++...++.+
T Consensus       184 ~~~~~H~~~~e~~~~~~~-~~~k~~vl~H~~~~~~~~~~~~~~~~~~  229 (244)
T d1zkpa1         184 AAKAGHMNSTEVASIAKD-ANVKELLLTHLPHTGNPADLVTEAKQIF  229 (244)
T ss_dssp             CGGGTCCBHHHHHHHHHH-TTCSEEEEESBCSSSCTHHHHHHHHTTC
T ss_pred             hhcccCCCHHHHHHHHHH-cCCCEEEEECCCCCCCHHHHHHHHHHhc
Confidence            211  1233445554444 4554444444445677778776665544

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.42  E-value=0.042  Score=40.26  Aligned_cols=79  Identities=6%  Similarity=0.009  Sum_probs=42.2

Q ss_pred             CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCCChh--HHHHHHHHHHHHHHhCCCeEEEEecc---c
Q psy13344         58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR--TRDERLMTNILQTLRNNGNVLVAVDT---A  132 (155)
Q Consensus        58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~~~~--~~~~~l~~~I~~tl~~gG~VLIP~fa---~  132 (155)
                      .+.+++|+||-.....      +  ....+|+||+|+||++..+....  ...+++.+.+++.  +-.++++-=|+   .
T Consensus       181 ~~~~~~~~gd~~~~~~------~--~~~~~d~li~e~~~~~~~~~~~~~H~t~~e~~~la~~~--~~k~lvltH~s~ry~  250 (280)
T d2e7ya1         181 HKKVLTISGDSLALDP------E--EIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAA--GVKKVILYHISTRYI  250 (280)
T ss_dssp             EEEEEEECCSCSSCCH------H--HHTTCSCEEEECCBC--------CCCBHHHHHHHHHHH--TCCEEEEESCCGGGH
T ss_pred             CCceeeecCCccCCcH------H--HHhcCCeEEEeccchhHHHhhhccCCCHHHHHHHHHHc--CCCEEEEEecCcccC
Confidence            4588999999654321      1  23579999999999986543211  1234444444442  22455554444   3


Q ss_pred             HHHHHHHHHHHHHH
Q psy13344        133 GRVLELTHMLEQLW  146 (155)
Q Consensus       133 GR~qEll~~L~~~~  146 (155)
                      ++.++++....+.+
T Consensus       251 ~~~~~~~~~~~~~~  264 (280)
T d2e7ya1         251 RQLKSVIKKYREEM  264 (280)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHhC
Confidence            55666665555544

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Escherichia coli [TaxId: 562]

Probab=86.98  E-value=0.085  Score=39.15  Aligned_cols=36  Identities=11%  Similarity=-0.010  Sum_probs=26.0

Q ss_pred             CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      .+.+++|+||-+.. +.+..     -..++|+||.|+||.+.
T Consensus       203 ~g~~i~~sgDt~~~-~~l~~-----~~~~~d~LI~E~t~~~~  238 (305)
T d2cbna1         203 PGKALAIFGDTGPC-DAALD-----LAKGVDVMVHEATLDIT  238 (305)
T ss_dssp             CCCEEEECCSCBSC-STHHH-----HHTTCSEEEEECCBCGG
T ss_pred             ccceeecccccCCc-hhHHH-----Hhhccceeeeccccchh
Confidence            56899999997643 22221     23689999999999763

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Bacillus subtilis [TaxId: 1423]

Probab=83.89  E-value=0.15  Score=37.87  Aligned_cols=36  Identities=11%  Similarity=0.089  Sum_probs=26.2

Q ss_pred             CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344         58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY   99 (155)
Q Consensus        58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~   99 (155)
                      .+.+++|+||-... +.+..     -..++|+||.|++|.+.
T Consensus       202 ~g~~~~~sgDt~~~-~~l~~-----~~~~~DlLi~E~~~~~~  237 (307)
T d1y44a1         202 KGRSVVFSGDTRVS-DKLKE-----LARDCDVMVHEATFAKE  237 (307)
T ss_dssp             CCCEEEECCSCBCC-HHHHH-----HTTTCSEEEEECCBCTT
T ss_pred             ccccccccccccch-HHHHH-----hhcCCceEEEeccccch
Confidence            46899999996532 33332     23689999999999874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=81.68  E-value=2  Score=32.35  Aligned_cols=61  Identities=20%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CCCcEEEEcCCCCCcCCCC-hhHHHHHHHHHHHHHHhCCCeEEEEecc--cHHHHHHHHHHHHHH
Q psy13344         85 IRPTVVITDTMSAIYQQAR-RRTRDERLMTNILQTLRNNGNVLVAVDT--AGRVLELTHMLEQLW  146 (155)
Q Consensus        85 ~~~D~LI~EsTyg~~~~~~-~~~~~~~l~~~I~~tl~~gG~VLIP~fa--~GR~qEll~~L~~~~  146 (155)
                      ..+|++|++-.-. ..++. ...+.-++++.+.+.|+.||.-++=+|+  -....|+|..|...|
T Consensus       131 ~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~f  194 (257)
T d2p41a1         131 ERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH  194 (257)
T ss_dssp             CCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             CcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHh
Confidence            5799999996321 11111 1233346788889999999999999997  445555555555554