Psyllid ID: psy13382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mewlfgrkitpeEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMddamdadededetNAVVTQVLDELGLqlgdqlasipdpassmmsdkgktpvaipggsgsnhsnnhgggggstlsDADADLQARLDNLRRE
Flexible Loop (DISEMBL)
mewlfgrkitpeemlrkNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMakegqmesvkimAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE
Low Complexity Region (SEG)
MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEImdmkeemmndamddamdadededeTNAVVTQVldelglqlgdqlASIPDPASSMMSDKGKTPVAIPggsgsnhsnnhgggggsTLSDADADLQARLDNLRRE
Disordered region (IsUnstruct)
***********************************************************KIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL**********************************************************************VTQVLDELGL****************************************************************
Disordered Region (DISOPRED)
*EW****KIT****************************************************AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRS******AMKGCSRAMQNMNRQMN*PQI**IL*******************************DETNAVVTQVLDELGLQLGD************************************************DLQARLDNLR**
Disordered Region (DISEMBL)
MEWLFGRKITPEEMLRKNQRALNKAMRDL***********KKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAM*********NAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE
Disordered Region (DISPRO)
*EW*FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLAS********************************************DLQARLDN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEWLFGRKITPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q7ZW25	220	Charged multivesicular bo	yes	N/A	0.928	1.0	0.654	7e-77
Q6DFS6	220	Charged multivesicular bo	yes	N/A	0.797	0.859	0.730	9e-72
Q6IP52	220	Charged multivesicular bo	N/A	N/A	0.797	0.859	0.724	1e-71
Q9DB34	222	Charged multivesicular bo	yes	N/A	0.797	0.851	0.693	3e-68
O43633	222	Charged multivesicular bo	yes	N/A	0.797	0.851	0.693	4e-68
Q5ZHN1	220	Charged multivesicular bo	yes	N/A	0.797	0.859	0.687	7e-62
Q54DB1	198	Charged multivesicular bo	yes	N/A	0.805	0.964	0.581	3e-59
Q9SKI2	225	Vacuolar protein sorting-	yes	N/A	0.940	0.991	0.5	3e-53
P36108	232	DOA4-independent degradat	yes	N/A	0.949	0.969	0.45	6e-49
O14177	210	ESCRT-III complex subunit	yes	N/A	0.772	0.871	0.422	4e-33

>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1

 Score =  286 bits (733), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/237 (65%), Positives = 192/237 (81%), Gaps = 17/237 (7%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1   MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFE+QSEIMDMKEEMMNDA+DDAM  ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
           ++P    S+    GK     P                 TL+DADADL+ RL+NLRR+
Sbjct: 181 NLPATGGSLSVAAGKKAEPQP-----------------TLADADADLEERLNNLRRD 220

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.
Danio rerio (taxid: 7955)

>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1

 Score =  270 bits (689), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 172/189 (91%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           ME+LFGR+ TPEEMLR+NQRALNKAMR++DRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1   MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFEKQSEIMDMKEEMMNDA+DDAM  ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180

Query: 181 SIPDPASSM 189
           ++P    S+
Sbjct: 181 NLPSTGGSL 189

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1

 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/189 (72%), Positives = 172/189 (91%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           ME+LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1   MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFEKQSEIMDMKEEMMNDA+DDAM  ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180

Query: 181 SIPDPASSM 189
           ++P    S+
Sbjct: 181 NLPSTGGSL 189

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1

 Score =  258 bits (659), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 170/189 (89%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFE+Q+EIMDMKEEMMNDA+DDAM  +EDE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query: 181 SIPDPASSM 189
           ++P    S+
Sbjct: 181 NLPSTGGSL 189

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 170/189 (89%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFE+Q+EIMDMKEEMMNDA+DDAM  +EDE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180

Query: 181 SIPDPASSM 189
           ++P    S+
Sbjct: 181 NLPSTGGSL 189

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1

 Score =  236 bits (603), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 166/189 (87%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM++VK
Sbjct: 1   MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKF+ M+AN+QAVSLKIQTL+S N+MA AMKG ++AM  MNRQ+ LP
Sbjct: 61  IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+I+ EFEKQ+ IMDMKEE+MNDA+DDAM  ++DE+E++AVV+QVLDELGL L D+LA
Sbjct: 121 QIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELA 180

Query: 181 SIPDPASSM 189
           ++P P  S+
Sbjct: 181 TLPPPGGSL 189

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 148/191 (77%)

Query: 3   WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
           +LFG++ TP+E+LR+NQR LNK+MR++DRE+  ++ QEKK+I DIKKMAK+GQM S KIM
Sbjct: 2   FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61

Query: 63  AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQI 122
           AKDLVRTR + +KF  MK  +QAVSL+IQTL+S  AMAEAMKG ++AM  MNRQMNLPQ 
Sbjct: 62  AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQF 121

Query: 123 QRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASI 182
            +I+ EFE+QS+ MDMKEEMMND MD  M+ D +E+++  ++ QVLDE+G+ L  QL   
Sbjct: 122 TKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181

Query: 183 PDPASSMMSDK 193
           P    + ++ K
Sbjct: 182 PTTVGTSVASK 192

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 172/236 (72%), Gaps = 13/236 (5%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           M  +FG++ TP E+LR+N+R L+K++R+++RE+Q ++ QEKKLI +IKK AK+GQM +VK
Sbjct: 2   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           +MAKDL+RTR   +KF  +K+ +Q VSL+IQTL+S  AM EAMKG ++AM  MNRQMNLP
Sbjct: 62  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
            +Q+I+QEFE+Q+E M+M  E+M DA+DDA++ DE+E+ET  +V+QVLDE+G+ +  +L 
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR 236
           + P  A ++ + K K   A   G     + + GG         D+DLQARLDNLR+
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATG-----AEDSGG--------IDSDLQARLDNLRK 224

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2

 Score =  194 bits (492), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 164/240 (68%), Gaps = 15/240 (6%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
            EW+FG+ +TP+E L+KNQRAL +  R+L+REK+ +E Q+KKL+++IKK AK GQ+ + K
Sbjct: 4   FEWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAK 63

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           + AKDLVRTR Y +KF  MKA +QA+SL+IQ +RS + M  +M   +  +  MNR MNLP
Sbjct: 64  VQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLP 123

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAM-DADEDEDETNAVVTQVLDELGLQLGDQL 179
           Q+QRI  EFEKQS++M  ++E M++A+D+ M D  ++++E + +V +VLDE+G+ L  QL
Sbjct: 124 QLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183

Query: 180 ASIPDPASSMMSDK--GKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            S P    +++S+    +T + IP   G+  S  HG        + D DLQARL+ L+++
Sbjct: 184 QSTP---QNLVSNAPIAETAMGIPEPIGAG-SEFHG--------NPDDDLQARLNTLKKQ 231

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies. Can directly stimulate VPS4 ATPase activity. The DID4/VPS2-VPS24 subcomplex is required for the VPS4-dependent dissociation of ESCRT-III.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=did4 PE=3 SV=2

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 130/187 (69%), Gaps = 4/187 (2%)

Query: 3   WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
           WLFG   +P+E LR +QR+L +A R+LDRE+  ++Q+E+ LI +IK  AK G   + +I 
Sbjct: 6   WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQ 65

Query: 63  AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQI 122
           A+DL+R R   KK M  K  +QA+SL++QT+R+   M ++M+G +R +  MN+ MN+P +
Sbjct: 66  ARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAM 125

Query: 123 QRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASI 182
            RI Q+FE+++EIM+ ++EM+++ MDDA   ++DE+E + +V +VLDE+G+ L      +
Sbjct: 126 ARITQQFERENEIMEQRQEMIDENMDDA-LEEDDEEEADELVNKVLDEIGVDLSQ---GL 181

Query: 183 PDPASSM 189
           PD A+ +
Sbjct: 182 PDAATQI 188

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
322790209	228	hypothetical protein SINV_04238 [Solenop	0.962	1.0	0.734	2e-87
350424105	227	PREDICTED: charged multivesicular body p	0.957	1.0	0.725	2e-87
307175574	227	Charged multivesicular body protein 2a [	0.957	1.0	0.729	5e-87
307206107	227	Charged multivesicular body protein 2a [	0.957	1.0	0.729	1e-86
383857259	227	PREDICTED: charged multivesicular body p	0.957	1.0	0.725	2e-86
66509926	227	PREDICTED: charged multivesicular body p	0.957	1.0	0.717	4e-86
380025498	227	PREDICTED: charged multivesicular body p	0.957	1.0	0.717	4e-86
332019427	228	Charged multivesicular body protein 2a [	0.962	1.0	0.717	5e-84
156551902	228	PREDICTED: charged multivesicular body p	0.962	1.0	0.708	2e-83
289741155	243	vacuolar assembly/sorting protein DID4 [	0.962	0.938	0.678	3e-83

>gi|322790209|gb|EFZ15208.1| hypothetical protein SINV_04238 [Solenopsis invicta]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 200/237 (84%), Gaps = 9/237 (3%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AKEGQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKMRMEQQEKKIIADIKKLAKEGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG ++AMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTKAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++AVV QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAVVAQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G         G   G  L DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLSVAGSKQPVAAAAG---------GNEDGGNLGDADADLQARLENLRRE 228

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424105|ref|XP_003493690.1| PREDICTED: charged multivesicular body protein 2a-like [Bombus impatiens]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 203/237 (85%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+I DIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIVDIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG +RAMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTRAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++A+V+QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAIVSQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N+ GG     L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLNVSNSKQPVATATG------NDEGGN----LTDADADLQARLENLRRE 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175574|gb|EFN65486.1| Charged multivesicular body protein 2a [Camponotus floridanus]

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 202/237 (85%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKVRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG ++AMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTKAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++A+V QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAIVAQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N  GG     L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLSVAGSKQPVAAAAG------NEEGG----NLADADADLQARLENLRRE 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206107|gb|EFN84187.1| Charged multivesicular body protein 2a [Harpegnathos saltator]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 202/237 (85%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERVRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG ++AMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTKAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++AVV QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAVVAQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N  GG     L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLNVVGSKQPVAAAAG------NEEGG----NLADADADLQARLENLRRE 227

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857259|ref|XP_003704122.1| PREDICTED: charged multivesicular body protein 2a-like [Megachile rotundata]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 204/237 (86%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAV+LKIQTLRSQN MA+AMKG +RAMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVALKIQTLRSQNTMAQAMKGVTRAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++A+V+QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEADEEESDAIVSQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N+ GG     L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLSVAGSKQPVATAAG------NDDGG----NLTDADADLQARLENLRRE 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66509926|ref|XP_625164.1| PREDICTED: charged multivesicular body protein 2a-like [Apis mellifera]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 202/237 (85%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG +RAMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTRAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+IL EFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++A+V+QVLDELGLQL DQL+
Sbjct: 121 QIQKILHEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAIVSQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N+ GG     ++DADADL ARL+NLRRE
Sbjct: 181 GLPQASGSLSVASSKQPVATATG------NDEGGN----VADADADLHARLENLRRE 227

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025498|ref|XP_003696510.1| PREDICTED: charged multivesicular body protein 2a-like [Apis florea]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 202/237 (85%), Gaps = 10/237 (4%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG +RAMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTRAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+IL EFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++A+V+QVLDELGLQL DQL+
Sbjct: 121 QIQKILHEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAIVSQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G      N+ GG     ++DADADL ARL+NLRRE
Sbjct: 181 GLPQASGSLSVASSKQPVAAATG------NDEGGN----IADADADLHARLENLRRE 227

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019427|gb|EGI59911.1| Charged multivesicular body protein 2a [Acromyrmex echinatior]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 199/237 (83%), Gaps = 9/237 (3%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AK+GQM++VK
Sbjct: 1   MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKVRMEQQEKKIIADIKKLAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG ++AMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTKAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++AVV QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDAVVAQVLDELGLQLTDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PV          +      G   L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLSVAGSKQPV---------AAAAGNEEGAGNLADADADLQARLENLRRE 228

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551902|ref|XP_001606844.1| PREDICTED: charged multivesicular body protein 2a-like [Nasonia vitripennis]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 200/237 (84%), Gaps = 9/237 (3%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           MEWLFG+++TPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+I DIKKMAK+GQM++VK
Sbjct: 1   MEWLFGKRVTPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIQDIKKMAKDGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTLRSQN MA+AMKG ++AMQNMN+Q+NLP
Sbjct: 61  IMAKDLVRTRRYVKKFMLMKANIQAVSLKIQTLRSQNTMAQAMKGVTKAMQNMNKQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+ILQEFEKQSEIMDMKEE+MNDA+DDAM+ + DE+E++ +V+QVLDELGLQL DQL+
Sbjct: 121 QIQKILQEFEKQSEIMDMKEEIMNDAIDDAMEDEGDEEESDQIVSQVLDELGLQLNDQLS 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
            +P  + S+     K PVA   G+     N         L+DADADLQARL+NLRRE
Sbjct: 181 GLPQASGSLSIASSKQPVAAAAGASDGDGN---------LADADADLQARLENLRRE 228

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741155|gb|ADD19325.1| vacuolar assembly/sorting protein DID4 [Glossina morsitans morsitans]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 204/252 (80%), Gaps = 24/252 (9%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
           M+WLFG+KI+P+EMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKKMAKEGQM++VK
Sbjct: 1   MDWLFGKKISPDEMLRKNQRALNKAMRDLDREKMKMEQQEKKIIADIKKMAKEGQMDAVK 60

Query: 61  IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
           IMAKDLVRTR+Y KKFM+MKANIQAVSLKIQTL+SQN MA+AMKG ++AMQNMNRQ+NLP
Sbjct: 61  IMAKDLVRTRRYIKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLP 120

Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
           QIQ+IL EFEKQSEIMDMKEEM+NDA+DDAM+ + DE+ET+AVV+QVLDELGLQLG+QL 
Sbjct: 121 QIQKILHEFEKQSEIMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLG 180

Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSN---------------HSNNHGGGGGSTLSDADA 225
            +P  + S+         +I GG+ +                 ++N   G  S +SDADA
Sbjct: 181 DLPTASGSL---------SIAGGNKATPAAVAAGGGAVAAGNGADNKSSGPSSPMSDADA 231

Query: 226 DLQARLDNLRRE 237
           DLQARLD LRR+
Sbjct: 232 DLQARLDKLRRD 243

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
FB|FBgn0039402	256	vps2 "vps2" [Drosophila melano	0.797	0.738	0.640	3.7e-64
ZFIN|ZDB-GENE-040426-2922	220	bc2 "putative breast adenocarc	0.822	0.886	0.579	6.9e-59
UNIPROTKB|Q5ZHN1	220	CHMP2A "Charged multivesicular	0.839	0.904	0.532	6.9e-55
WB|WBGene00012903	237	vps-2 [Caenorhabditis elegans	1.0	1.0	0.506	7e-54
UNIPROTKB|O43633	222	CHMP2A "Charged multivesicular	0.936	1.0	0.510	4.9e-53
MGI|MGI:1916203	222	Chmp2a "charged multivesicular	0.936	1.0	0.510	4.9e-53
RGD|1305050	222	Chmp2a "charged multivesicular	0.936	1.0	0.510	4.9e-53
UNIPROTKB|E2RIU2	222	CHMP2A "Uncharacterized protei	0.936	1.0	0.510	8e-53
UNIPROTKB|Q3T0U5	222	CHMP2A "Chromatin modifying pr	0.936	1.0	0.510	1.3e-52
ASPGD|ASPL0000001940	226	AN6898 [Emericella nidulans (t	0.569	0.597	0.562	2.8e-42

FB|FBgn0039402 vps2 "vps2" [Drosophila melanogaster (taxid:7227)]

 Score = 599 (215.9 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 121/189 (64%), Positives = 144/189 (76%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKKMAKEGQM++VK
Sbjct:     1 MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVK 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+YAKKFM+MKANIQAVSLKIQTL+SQN MA+AMKG ++AMQNMNRQ+NLP
Sbjct:    61 IMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+ILQ+FEKQSE+                        T+AVV+QV             
Sbjct:   121 QIQKILQDFEKQSEMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLG 180

Query:   181 SIPDPASSM 189
              +P  + S+
Sbjct:   181 DLPSASGSL 189

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2922 bc2 "putative breast adenocarcinoma marker" [Danio rerio (taxid:7955)]

 Score = 549 (198.3 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 113/195 (57%), Positives = 141/195 (72%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct:     1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+QSEI                        ++AVV+QV            +
Sbjct:   121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180

Query:   181 SIPDPASSMMSDKGK 195
             ++P    S+    GK
Sbjct:   181 NLPATGGSLSVAAGK 195

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q5ZHN1 CHMP2A "Charged multivesicular body protein 2a" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 106/199 (53%), Positives = 139/199 (69%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM++VK
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y KKF+ M+AN+QAVSLKIQTL+S N+MA AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFEKQ+ I                        ++AVV+QV            A
Sbjct:   121 QIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELA 180

Query:   181 SIPDPASSMMSDKGKTPVA 199
             ++P P  S+ + +G+   A
Sbjct:   181 TLPPPGGSLAAGEGRAAEA 199

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

WB|WBGene00012903 vps-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 120/237 (50%), Positives = 151/237 (63%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M++LFGR+ TP E+LR+NQRALNKA+R+LDRE+  ME QEKK+IADIK MAK+ QM+SVK
Sbjct:     1 MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVK 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             +MAKDLVRTR+Y KKF++MKANIQAVSLK+QTL+SQ+AMA AMKG ++AMQ+MNRQ+NLP
Sbjct:    61 VMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFEKQSEI                        T+ +V QV            A
Sbjct:   121 QIQKIMMEFEKQSEIMDMKEEVMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEMA 180

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
              +P  A  + +   +                         +D D DLQARLD LRRE
Sbjct:   181 GLPSAAGGLNAGGERIGGRQAVAAGGSGGAHHGAGGAGGGNDVDDDLQARLDQLRRE 237

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O43633 CHMP2A "Charged multivesicular body protein 2a" [Homo sapiens (taxid:9606)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 121/237 (51%), Positives = 158/237 (66%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+Q+EI                        ++AVV+QV             
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGL------- 173

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
             S+ D  S++ S  G   VA                    L+DADADL+ RL NLRR+
Sbjct:   174 SLTDELSNLPSTGGSLSVA--------AGGKKAEAAASALADADADLEERLKNLRRD 222

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:1916203 Chmp2a "charged multivesicular body protein 2A" [Mus musculus (taxid:10090)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 121/237 (51%), Positives = 158/237 (66%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+Q+EI                        ++AVV+QV             
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGL------- 173

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
             S+ D  S++ S  G   VA                    L+DADADL+ RL NLRR+
Sbjct:   174 SLTDELSNLPSTGGSLSVA--------AGGKKAEATASALADADADLEERLKNLRRD 222

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

RGD|1305050 Chmp2a "charged multivesicular body protein 2A" [Rattus norvegicus (taxid:10116)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 121/237 (51%), Positives = 158/237 (66%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+Q+EI                        ++AVV+QV             
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGL------- 173

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
             S+ D  S++ S  G   VA                    L+DADADL+ RL NLRR+
Sbjct:   174 SLTDELSNLPSTGGSLSVA--------AGGKKAEATASALADADADLEERLKNLRRD 222

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

UNIPROTKB|E2RIU2 CHMP2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 121/237 (51%), Positives = 157/237 (66%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+Q+EI                        ++AVV+QV             
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGL------- 173

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
             S+ D  S++ S  G   VA                    L DADADL+ RL NLRR+
Sbjct:   174 SLTDELSNLPSTGGSLSVA--------ASGKKAEAAASALVDADADLEERLKNLRRD 222

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q3T0U5 CHMP2A "Chromatin modifying protein 2A" [Bos taurus (taxid:9913)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 121/237 (51%), Positives = 156/237 (65%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM  MNRQ+ LP
Sbjct:    61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120

Query:   121 QIQRILQEFEKQSEIXXXXXXXXXXXXXXXXXXXXXXXXTNAVVTQVXXXXXXXXXXXXA 180
             QIQ+I+ EFE+Q+EI                        ++AVV QV             
Sbjct:   121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVAQVLDELGL------- 173

Query:   181 SIPDPASSMMSDKGKTPVAIPXXXXXXXXXXXXXXXXXTLSDADADLQARLDNLRRE 237
             S+ D  S++ S  G   VA                    L DADADL+ RL NLRR+
Sbjct:   174 SLTDELSNLPSTGGSLSVA--------AGGKKAEATASALVDADADLEERLKNLRRD 222

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ASPGD|ASPL0000001940 AN6898 [Emericella nidulans (taxid:162425)]

 Score = 410 (149.4 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 76/135 (56%), Positives = 105/135 (77%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
             +EW FG+++TP E LRK+QRAL++  R+LDRE+  +E QEKKLI DIKK AK GQ+ + K
Sbjct:     4 VEWAFGKRMTPAERLRKHQRALDRTQRELDRERTKLENQEKKLIQDIKKSAKNGQIGACK 63

Query:    61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
             I AKDLVRTR+Y +KF  M+  +QA+SL+IQT+RS   M ++MKG +  + +MNRQMNLP
Sbjct:    64 IQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMMQSMKGATMLLGSMNRQMNLP 123

Query:   121 QIQRILQEFEKQSEI 135
              +QRI  EFE++++I
Sbjct:   124 ALQRIAMEFERENDI 138

GO:0003674 "molecular_function" evidence=ND

GO:0043936 "asexual sporulation resulting in formation of a cellular spore" evidence=IEA

GO:0045053 "protein retention in Golgi apparatus" evidence=IEA

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DFS6	CHM2A_XENTR	No assigned EC number	0.7301	0.7974	0.8590	yes	N/A
Q54DB1	CM2A2_DICDI	No assigned EC number	0.5811	0.8059	0.9646	yes	N/A
Q6IP52	CHM2A_XENLA	No assigned EC number	0.7248	0.7974	0.8590	N/A	N/A
P36108	DID4_YEAST	No assigned EC number	0.45	0.9493	0.9698	yes	N/A
Q5ZHN1	CHM2A_CHICK	No assigned EC number	0.6878	0.7974	0.8590	yes	N/A
O43633	CHM2A_HUMAN	No assigned EC number	0.6931	0.7974	0.8513	yes	N/A
Q9SKI2	VPS2A_ARATH	No assigned EC number	0.5	0.9409	0.9911	yes	N/A
Q7ZW25	CHM2A_DANRE	No assigned EC number	0.6540	0.9282	1.0	yes	N/A
Q9DB34	CHM2A_MOUSE	No assigned EC number	0.6931	0.7974	0.8513	yes	N/A
O14177	DID4_SCHPO	No assigned EC number	0.4224	0.7721	0.8714	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	237
pfam03357	169	pfam03357, Snf7, Snf7	2e-41
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	3e-13

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  138 bits (350), Expect = 2e-41
 Identities = 58/167 (34%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 17  KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76
           +   +L KA+R+LD++++ +E++ KKL A+IKK+AK+G  ++  I+ K   R  K   + 
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 77  MMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIM 136
               AN++ V + I+  ++   +  AMKG ++AM+ MN+ M++ +I  ++ E E Q E  
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 137 DMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIP 183
           D   EM++D +DDA   +EDE+E +A +  +LDE+G +   +L S P
Sbjct: 121 DEISEMLSDTLDDA--DEEDEEELDAELDALLDEIGDEELVELPSAP 165

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 37  EQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK--KFMMMKANIQAVSLKIQTLR 94
           E+Q KKL+ ++K+ AK+GQ+   +I  K   R R   +  K    ++ + A   ++Q+L 
Sbjct: 6   ERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLD 65

Query: 95  SQNAMAEAMKGCSRAMQNMNRQMN-LPQIQRILQEFEKQSEIMD---MKEEMMNDAMDDA 150
           +       M+  S  M      MN L  I+RI+Q FE Q   ++   ++ E M++ MD  
Sbjct: 66  TMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVV 125

Query: 151 MDADEDEDETNA--VVTQVLDELGLQLGDQLASIPDPASSMMSDK 193
           +     ED      +V +VL E+GL+L +   S+P       S  
Sbjct: 126 VGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVP 170

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG3230|consensus	224		100.0
KOG3231|consensus	208		100.0
KOG3232|consensus	203		100.0
KOG3229|consensus	227		100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.93
PTZ00464	211	SNF-7-like protein; Provisional	99.91
KOG1656|consensus	221		99.86
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.85
KOG1655|consensus	218		99.84
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.61
KOG2910|consensus	209		99.56
KOG2911|consensus	439		99.2
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	98.12
PTZ00464	211	SNF-7-like protein; Provisional	98.08
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.92
PRK10698	222	phage shock protein PspA; Provisional	97.91
KOG3230|consensus	224		97.73
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.49
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.44
KOG1656|consensus	221		97.37
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.33
KOG3231|consensus	208		97.26
KOG3232|consensus	203		96.78
KOG3229|consensus	227		96.61
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	96.55
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.64
KOG1655|consensus	218		90.7
KOG2911|consensus	439		88.35
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.13
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	83.2

>KOG3230|consensus

Probab=100.00  E-value=3e-60  Score=393.10  Aligned_cols=223  Identities=66%  Similarity=0.932  Sum_probs=205.9

Q ss_pred             CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK   80 (237)
Q Consensus         1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~   80 (237)
                      |+ +||+++||.|.+|+++|.|.+++|+|+|++.+++.++||+..+||+.+|+|++.++||+|++|||.|+++.+|+.++
T Consensus         1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k   79 (224)
T KOG3230|consen    1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK   79 (224)
T ss_pred             CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHH
Q psy13382         81 ANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDET  160 (237)
Q Consensus        81 aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~  160 (237)
                      +||.+|+.++|+.+++..|+.+|+++|++|..||++||||+++++|++|++|++.|++.+|||+|++|++++++++|||.
T Consensus        80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEt  159 (224)
T KOG3230|consen   80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEET  159 (224)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchhhhhhccCCCCCCCCcCccCC-CCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhcC
Q psy13382        161 NAVVTQVLDELGLQLGDQLASIPDPASSMMSDKG-KTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE  237 (237)
Q Consensus       161 d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~~  237 (237)
                      |++|+|||||||++++.+|.++|+..+++|.+.. ...++.++|           ++  ..++.||||++||++||+.
T Consensus       160 d~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~g-----------s~--~~~~~dddLqaRL~~Lrk~  224 (224)
T KOG3230|consen  160 DDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAG-----------SE--FHSDADDDLQARLDNLRKD  224 (224)
T ss_pred             HHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccc-----------cc--cCCCchhHHHHHHHHHhcC
Confidence            9999999999999999999999998888887632 112222211           11  1245689999999999974

>KOG3231|consensus

Probab=100.00  E-value=6.2e-48  Score=312.72  Aligned_cols=208  Identities=36%  Similarity=0.585  Sum_probs=194.2

Q ss_pred             CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK   80 (237)
Q Consensus         1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~   80 (237)
                      ++ +|++ +||+|+.|++.|.||++.|.|+|++++++++|++|+.+||+.+..||.++||+|||+||..|||+.+-|.++
T Consensus         1 ~n-iF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s   78 (208)
T KOG3231|consen    1 AN-IFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVS   78 (208)
T ss_pred             CC-cccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            35 8987 699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHH
Q psy13382         81 ANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDET  160 (237)
Q Consensus        81 aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~  160 (237)
                      +++.+++.|-..+.++..|.++|...+++|+.||+.|+|+++..+|.+|++..++|++.+|||+|++|++++.++|+||.
T Consensus        79 ~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs  158 (208)
T KOG3231|consen   79 SKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEES  158 (208)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchhhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382        161 NAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR  236 (237)
Q Consensus       161 d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~  236 (237)
                      +++|+|||||||||++++++++|+..+ +|..                       +  +.....+||++.|++||.
T Consensus       159 ~aiVNqVLDEIGIEisgKma~~P~a~s-~~~~-----------------------s--t~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  159 QAIVNQVLDEIGIEISGKMAKAPSARS-LPSA-----------------------S--TSKATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHHHHhhhhhcchhccCCccCC-CCcc-----------------------c--cCCCcHHHHHHHHHHhcC
Confidence            999999999999999999999998543 2221                       0  112346789999999984

>KOG3232|consensus

Probab=100.00  E-value=6e-44  Score=291.05  Aligned_cols=197  Identities=27%  Similarity=0.465  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL   93 (237)
Q Consensus        14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a   93 (237)
                      .+-+..+.|+++.++|.|..++|+++||.++.++|+++++||++.|||||.++||+|++..+|+++++++|+|++++|++
T Consensus         6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTa   85 (203)
T KOG3232|consen    6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTA   85 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhch
Q psy13382         94 RSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL  173 (237)
Q Consensus        94 ~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~  173 (237)
                      .+|.+++++|.+++++|....+.|||++|+.+|+.|++||+++++..++|+++|++.+..+.|+++||.|+++|+||.|+
T Consensus        86 vtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGl  165 (203)
T KOG3232|consen   86 VTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGL  165 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhch
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             hhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382        174 QLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR  236 (237)
Q Consensus       174 e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~  236 (237)
                      |++..|+..-.+  +.|++                        ++.+.+++|+|.+||++||.
T Consensus       166 Elnq~lp~~~~~--a~~~~------------------------t~~~~~e~d~L~qRLaaLR~  202 (203)
T KOG3232|consen  166 ELNQELPQNVVP--AISVK------------------------TSAVVDEEDDLTQRLAALRA  202 (203)
T ss_pred             hhhhcCCCCCCC--CcCCC------------------------CccccchhhHHHHHHHHHhc
Confidence            999887532111  11211                        11234566999999999995

>KOG3229|consensus

Probab=100.00  E-value=8.3e-44  Score=297.36  Aligned_cols=180  Identities=27%  Similarity=0.496  Sum_probs=171.6

Q ss_pred             ccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA   81 (237)
Q Consensus         4 ~Fg~--k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~a   81 (237)
                      +||+  +|||||++|+|++-||++.|.|||+++.+++++++.+..||+++|+|++..|++|||++|+.|+++.|||..++
T Consensus         3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            6776  58999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHH
Q psy13382         82 NIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETN  161 (237)
Q Consensus        82 ql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d  161 (237)
                      ||+||++++..+.++..++++|.+++.+|+.||++|.+|+|..||.+|+++|+++|+|+||++++|+++.|.++.++++|
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d  162 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD  162 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhchhhhhhccCCCCCC
Q psy13382        162 AVVTQVLDELGLQLGDQLASIPDPA  186 (237)
Q Consensus       162 ~lv~qvldE~g~e~~~~L~~~P~~~  186 (237)
                      ++|++||.+|.   ++.++++|.+.
T Consensus       163 eEVdkIL~~it---~~~~~~~p~a~  184 (227)
T KOG3229|consen  163 EEVDKILTEIT---GEKAGEAPLAV  184 (227)
T ss_pred             HHHHHHHHHHh---ccccccCCcch
Confidence            99999999996   44566666553

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.93  E-value=4.3e-26  Score=187.98  Aligned_cols=167  Identities=30%  Similarity=0.472  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ   96 (237)
Q Consensus        17 ~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~   96 (237)
                      ++.+.|+.+++.|++.+.+|+.+.+++..++|+++++|+...|++|++..++.+++..+++.+..+|+.+..+++++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhchhh-
Q psy13382         97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQL-  175 (237)
Q Consensus        97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~e~-  175 (237)
                      ..+..+|+.++++|+.+|+.|++++|..+|++|.++++.+++++++|++.++..  .+++++|++++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999998754  45567899999999999999887 


Q ss_pred             -hhhccCCCCC
Q psy13382        176 -GDQLASIPDP  185 (237)
Q Consensus       176 -~~~L~~~P~~  185 (237)
                       ...||++|++
T Consensus       159 ~~~~lp~~P~~  169 (171)
T PF03357_consen  159 EKQQLPSVPST  169 (171)
T ss_dssp             -SS-SS---HH
T ss_pred             ccccCCcCCCC
Confidence             6666666653

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.91  E-value=1.8e-22  Score=173.38  Aligned_cols=169  Identities=19%  Similarity=0.303  Sum_probs=145.6

Q ss_pred             CccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----
Q psy13382          1 MEWLFGRKI-TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK----   75 (237)
Q Consensus         1 m~~~Fg~k~-tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~----   75 (237)
                      |++|||+++ .|+..++++...|+.....|++.+.+|+.|..+.+..+++.-. ......|..|..++|.||.+++    
T Consensus         1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~   79 (211)
T PTZ00464          1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDM   79 (211)
T ss_pred             CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999865 6888999999999999999999999999998888888876543 2224468899999999997755    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccc
Q psy13382         76 FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADE  155 (237)
Q Consensus        76 l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~  155 (237)
                      ++....+|+.+.+.|+++..+..|..+|+.++++|+.+|+.|++++|+.+|+++..+++..+.|+++|+..++.  .++.
T Consensus        80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~--~~~~  157 (211)
T PTZ00464         80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDV--PDDI  157 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999987642  2234


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy13382        156 DEDETNAVVTQVLDELG  172 (237)
Q Consensus       156 ~eeE~d~lv~qvldE~g  172 (237)
                      ||+|++++++.+..|+.
T Consensus       158 DEdELe~ELe~Le~e~~  174 (211)
T PTZ00464        158 DEDEMLGELDALDFDME  174 (211)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            66677777777776653

>KOG1656|consensus

Probab=99.86  E-value=2.9e-19  Score=149.87  Aligned_cols=165  Identities=21%  Similarity=0.377  Sum_probs=117.2

Q ss_pred             CccccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHH
Q psy13382          1 MEWLFGRK-----ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK-EGQMESVKIMAKDLVRTRKYAK   74 (237)
Q Consensus         1 m~~~Fg~k-----~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak-kg~~~~aki~Ak~lvr~rk~~~   74 (237)
                      |+||||+.     +||++.+.    .||-+..-|++   |-+-.++++..++...++ .|..  -|..|.++++++|.++
T Consensus         4 ~~~~FG~~k~~~~~t~~eaI~----kLrEteemL~K---Kqe~Le~ki~~e~e~~A~k~~tk--NKR~AlqaLkrKK~~E   74 (221)
T KOG1656|consen    4 FSRLFGGMKQEAKPTPQEAIQ----KLRETEEMLEK---KQEFLEKKIEQEVENNARKYGTK--NKRMALQALKRKKRYE   74 (221)
T ss_pred             HHHHhCcccccCCCChHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence            68899985     36665543    34444444444   455556667777666444 3333  4778888888887776


Q ss_pred             H-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--
Q psy13382         75 K-FMMMKANIQAVSLK---IQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD--  148 (237)
Q Consensus        75 ~-l~~~~aql~sv~~~---lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~--  148 (237)
                      + |.+.-..+..+..|   |+++..+..|..+|+.++++||.+++.||+++|+.+|+++..|.+.+..|+++|+.+++  
T Consensus        75 ~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~  154 (221)
T KOG1656|consen   75 KQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFG  154 (221)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            5 44444444444444   67788999999999999999999999999999999999999999999999999999986  


Q ss_pred             hccCccccHHHHHHHHHHHHHHhchh
Q psy13382        149 DAMDADEDEDETNAVVTQVLDELGLQ  174 (237)
Q Consensus       149 ~~~~~~~~eeE~d~lv~qvldE~g~e  174 (237)
                      ..+|+++...|+|+|-+..||.--++
T Consensus       155 a~~DEDEL~~ELdeLeqeeld~~ll~  180 (221)
T KOG1656|consen  155 ADFDEDELMAELDELEQEELDKELLD  180 (221)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            22444444555555555555544333

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.85  E-value=4.1e-19  Score=150.00  Aligned_cols=165  Identities=16%  Similarity=0.339  Sum_probs=135.8

Q ss_pred             CccccCCCC-Ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy13382          1 MEWLFGRKI-TP---------EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR   70 (237)
Q Consensus         1 m~~~Fg~k~-tp---------ke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~r   70 (237)
                      |+|||||++ .|         +..+.++...||.+...|++...+|+....++...+|+++++|+..    -|..++|+|
T Consensus         1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrK   76 (191)
T PTZ00446          1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRK   76 (191)
T ss_pred             CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHH
Confidence            789999965 34         1258888899999999999999999999999999999999999954    477889988


Q ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q psy13382         71 KYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA  146 (237)
Q Consensus        71 k~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~  146 (237)
                      |.+++    ++....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++|+..
T Consensus        77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~  156 (191)
T PTZ00446         77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN  156 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            87755    66778888888899999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCccccHHHHHHHHHHHHH
Q psy13382        147 MDDAMDADEDEDETNAVVTQVLD  169 (237)
Q Consensus       147 ~~~~~~~~~~eeE~d~lv~qvld  169 (237)
                      +.+..|+++.++|+++|..+-++
T Consensus       157 ~~~~~DEdELe~ELe~Le~e~l~  179 (191)
T PTZ00446        157 LLNNVDDDEIDKELDLLKEQTME  179 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Confidence            43223333444444444443333

>KOG1655|consensus

Probab=99.84  E-value=6.4e-19  Score=146.96  Aligned_cols=168  Identities=20%  Similarity=0.327  Sum_probs=156.1

Q ss_pred             CccccCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---
Q psy13382          1 MEWLFGRK--ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK---   75 (237)
Q Consensus         1 m~~~Fg~k--~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~---   75 (237)
                      |++|||.+  +.|-+.+.++...+.+....++..|.+|+.+-.+++.+|++.-..+-..+.|..|..++++||+|++   
T Consensus         1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d   80 (218)
T KOG1655|consen    1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD   80 (218)
T ss_pred             CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            89999985  3688999999999999999999999999999999999999997777889999999999999998866   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCcc
Q psy13382         76 -FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDAD  154 (237)
Q Consensus        76 -l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~  154 (237)
                       |+..+++|+.+.+..+..+.+..++.+|+.+++.|+.+.+.||+++|..+-++++.-|+..+.++|+++..++.  . +
T Consensus        81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~--p-e  157 (218)
T KOG1655|consen   81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNT--P-D  157 (218)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--C-C
Confidence             89999999999999999999999999999999999999999999999999999999999999999999999874  2 3


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy13382        155 EDEDETNAVVTQVLDEL  171 (237)
Q Consensus       155 ~~eeE~d~lv~qvldE~  171 (237)
                      .++++++++++.+.+|.
T Consensus       158 ide~dL~aELdaL~~E~  174 (218)
T KOG1655|consen  158 IDEADLDAELDALGQEL  174 (218)
T ss_pred             cCHHHHHHHHHHHHhHh
Confidence            67788888888886665

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.61  E-value=5e-14  Score=119.94  Aligned_cols=150  Identities=27%  Similarity=0.371  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         29 LDREKQHMEQQEKKLIADIKKMAKEG--QMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGC  106 (237)
Q Consensus        29 Lere~~kle~eekk~~~~iKkaakkg--~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~  106 (237)
                      +++++.++-.+.+.......+..++-  .....+++++.+++.++++       ++|+.+.++||+..++....-+|..+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~-------srL~~~~sRLqs~~~~~~e~~~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKAR-------SRLDASISRLQSLDTMLFEKVVMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666555555432  3344566666666655554       66666666666667777777778888


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhccC--ccccHHHHHHHHHHHHHHhchhhhhhcc
Q psy13382        107 SRAMQNMNRQMN-LPQIQRILQEFEKQSEIMDMKE---EMMNDAMDDAMD--ADEDEDETNAVVTQVLDELGLQLGDQLA  180 (237)
Q Consensus       107 ~k~M~~~n~~m~-l~ki~~~M~ef~~q~e~~~~~~---e~m~d~~~~~~~--~~~~eeE~d~lv~qvldE~g~e~~~~L~  180 (237)
                      +..|..++..|| ++.|.++|+.|+.++..++...   |.|.+.++...+  ..++.+++|++|+.|++|+|+++.....
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence            888888888888 9999999999999999999999   777777776664  4457889999999999999999997777


Q ss_pred             CCCCC
Q psy13382        181 SIPDP  185 (237)
Q Consensus       181 ~~P~~  185 (237)
                      ++|..
T Consensus       158 ~~~~~  162 (204)
T COG5491         158 SLPAN  162 (204)
T ss_pred             cchhh
Confidence            77763

>KOG2910|consensus

Probab=99.56  E-value=3.5e-12  Score=106.41  Aligned_cols=179  Identities=17%  Similarity=0.326  Sum_probs=140.5

Q ss_pred             CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH--
Q psy13382          1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMM--   78 (237)
Q Consensus         1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~--   78 (237)
                      |..+|+|++ +---...+.-.|+..-+.|-+-.+++++.....+...|++++.|..+.|    .-+++++++...|+.  
T Consensus         1 MG~lfsK~~-~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrA----lllLKkKryQE~Ll~qt   75 (209)
T KOG2910|consen    1 MGNLFSKKS-RITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRA----LLLLKKKRYQEELLTQT   75 (209)
T ss_pred             CCccccCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHHHH
Confidence            677999843 3233455677889989999999999999999999999999999997655    558888888887664  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCcccc
Q psy13382         79 --MKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADED  156 (237)
Q Consensus        79 --~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~  156 (237)
                        .-.+|..+.+.|.-.....++...++..+.+++++|+.|+++.|+.+|++-...++--+.+.+|+++.|..     ++
T Consensus        76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~d  150 (209)
T KOG2910|consen   76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----ED  150 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----cc
Confidence              33445555666666777889999999999999999999999999999999999999999999999999862     24


Q ss_pred             HHHHHHHHHHHHHHhchhhhhhccCCCCCCCCcCc
Q psy13382        157 EDETNAVVTQVLDELGLQLGDQLASIPDPASSMMS  191 (237)
Q Consensus       157 eeE~d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~  191 (237)
                      ++++.++++.+..|...+  .+++++|+...++|.
T Consensus       151 Eddi~~EldaLese~~~e--~e~PevPs~ep~lPe  183 (209)
T KOG2910|consen  151 EDDILAELDALESELEVE--AELPEVPSTEPELPE  183 (209)
T ss_pred             HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCCccc
Confidence            455555555555555433  468888887644443

>KOG2911|consensus

Probab=99.20  E-value=2.5e-09  Score=99.25  Aligned_cols=156  Identities=13%  Similarity=0.178  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLR   94 (237)
Q Consensus        15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~   94 (237)
                      +.-..-.|..+.-.|.|++..|+.+-++.+.+++.+.|.|....|..|++..-+.-|-+.++.....+|++|-.+|.++.
T Consensus       231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~  310 (439)
T KOG2911|consen  231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ  310 (439)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            45566778999999999999999999999999999999999988888888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382         95 SQNAMAEAMKGCSRAMQNMNR-QMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG  172 (237)
Q Consensus        95 s~~~~~~am~~~~k~M~~~n~-~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g  172 (237)
                      ++.-+..||+.++.+|+.++. ...+++|..+|++...-++....++++|....-...  +.++|+++.++..++.+..
T Consensus       311 ~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~--d~~de~lEkEL~~L~~D~~  387 (439)
T KOG2911|consen  311 TNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNI--DFEDEDLEKELEDLEADEK  387 (439)
T ss_pred             ccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC--ccchHHHHHHHHHHHhccc
Confidence            999999999999999999998 568899999999999999999999999888765433  3345667777776665553

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=98.12  E-value=0.0005  Score=58.48  Aligned_cols=144  Identities=14%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK-----DLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ   96 (237)
Q Consensus        22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak-----~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~   96 (237)
                      ..+++-.|...+..|++.+..+..+|.+.-.     .||.+.+     .+++.=+.+..|.....++++..+.|+.+..+
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~   99 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999977642     2332221     12222233444666778888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHH
Q psy13382         97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQE---FEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE  170 (237)
Q Consensus        97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~e---f~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE  170 (237)
                      ...+..=..+..+|+..++.|+--.=.-.+++   +..++...-..++=|++++.....++.||+|++++++.+..|
T Consensus       100 iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446        100 LENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            88888778888888888877643321112334   444444444455566777875544567899999999988765

>PTZ00464 SNF-7-like protein; Provisional

Probab=98.08  E-value=0.0017  Score=56.08  Aligned_cols=168  Identities=14%  Similarity=0.175  Sum_probs=120.6

Q ss_pred             CCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q psy13382          7 RKITPEEM---LRKNQRALNKAMRDLDREKQHMEQQEKKL--------IADIKKMAKEGQMESVKIMAKDLVRTRKYAKK   75 (237)
Q Consensus         7 ~k~tpke~---~r~~~r~Lr~~~R~Lere~~kle~eekk~--------~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~   75 (237)
                      .++|+.+.   +|+-...|.+.+..|++++.++-+.-++.        +..++.++|     .-|.|=+++-+...+..+
T Consensus        12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK-----~KK~~E~ql~~l~~q~~n   86 (211)
T PTZ00464         12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQ-----QKRMYQNQQDMMMQQQFN   86 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence            34677655   56666668888888999888887665544        555555655     346788888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHhhhHHHHHhhhhhhccCcc
Q psy13382         76 FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQE-FEKQSEIMDMKEEMMNDAMDDAMDAD  154 (237)
Q Consensus        76 l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~e-f~~q~e~~~~~~e~m~d~~~~~~~~~  154 (237)
                      |..+...|+.......+..++..-+.+|+...+.| .+   =+++.|..-|.+ ++.+.+..+++..-+.-.-+  +|++
T Consensus        87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~i---d~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~--~DEd  160 (211)
T PTZ00464         87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-NV---DKVEDLQDELADLYEDTQEIQEIMGRAYDVPDD--IDED  160 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCHH
Confidence            99999999999999999999999999999888776 23   377777444444 55566666667665532112  4667


Q ss_pred             ccHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q psy13382        155 EDEDETNAVVTQVLDELGLQLGDQLASIPDP  185 (237)
Q Consensus       155 ~~eeE~d~lv~qvldE~g~e~~~~L~~~P~~  185 (237)
                      +.++|+++|...+..|.....-..++++|+.
T Consensus       161 ELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~  191 (211)
T PTZ00464        161 EMLGELDALDFDMEKEADASYLADALAVPGT  191 (211)
T ss_pred             HHHHHHHHHHHHHhccccchhhhccccCCCC
Confidence            8899999999998888764433334444443

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.92  E-value=0.00061  Score=58.45  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhhhHHHHHhhhhh-hccC-cc
Q psy13382         78 MMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQ-SEIMDMKEEMMNDAMD-DAMD-AD  154 (237)
Q Consensus        78 ~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q-~e~~~~~~e~m~d~~~-~~~~-~~  154 (237)
                      ..+++|+++...++...+|.++.+-|..++..|..+.....+++.-.|+...-++ -..++.+.+.++...+ ++.+ ..
T Consensus        56 ~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~  135 (204)
T COG5491          56 ASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLE  135 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHH
Confidence            3568999999999999999999999999999999999888888887777643322 2256788888887774 4444 44


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q psy13382        155 EDEDETNAVVTQVLDELG  172 (237)
Q Consensus       155 ~~eeE~d~lv~qvldE~g  172 (237)
                      +.++.+..++.++--|..
T Consensus       136 ~lde~v~~v~pEi~lel~  153 (204)
T COG5491         136 ELDELVNKVLPEIGLELD  153 (204)
T ss_pred             HHHHHHHhhchhhhhhhh
Confidence            557777777777655543

>PRK10698 phage shock protein PspA; Provisional

Probab=97.91  E-value=0.0028  Score=55.18  Aligned_cols=130  Identities=12%  Similarity=0.217  Sum_probs=92.8

Q ss_pred             CCChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------HHHHH
Q psy13382          8 KITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI-------MAKDL   66 (237)
Q Consensus         8 k~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki-------~Ak~l   66 (237)
                      --+|...++...+.++.              ..+.++|+...++....+...+...|+.+|+-+-||.       |+..+
T Consensus        22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~  101 (222)
T PRK10698         22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLI  101 (222)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            34888777766666654              4567888899999999999999999999999998887       77777


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q psy13382         67 VRTRKYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMD  137 (237)
Q Consensus        67 vr~rk~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~  137 (237)
                      -..+.++..    .-.+..++..+..+|+.+++-..+.-+=..++.+...+|..+.--.....|..|++--++.+
T Consensus       102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~  176 (222)
T PRK10698        102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID  176 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence            776666654    33456667777777777777777776767777777777766655555555655554444433

>KOG3230|consensus

Probab=97.73  E-value=0.0023  Score=54.28  Aligned_cols=146  Identities=21%  Similarity=0.255  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK----DLVRT-RKYAKKFMMMKANIQAVSLKIQTLRSQ   96 (237)
Q Consensus        22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak----~lvr~-rk~~~~l~~~~aql~sv~~~lq~a~s~   96 (237)
                      ||.+.|.|++-.+.|+|+..+++.+-|+.+-     -.|-.||    .+++. -|...|+-+...++.....+||....-
T Consensus        14 Lr~nqRal~~a~ReleRer~~le~qeKklva-----eIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~   88 (224)
T KOG3230|consen   14 LRENQRALNKATRELERERQKLELQEKKLVA-----EIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLR   88 (224)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666677766666666665543     1122222    22221 233444445555555666666665555


Q ss_pred             HHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382         97 NAMAEAMKGCSRAMQNM---NRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG  172 (237)
Q Consensus        97 ~~~~~am~~~~k~M~~~---n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g  172 (237)
                      .++..+-...+.+|+.+   ...||-.----.+..+..+|++-..+=+|-.+.|++++|+--+++|-+++-+.|..-.-
T Consensus        89 iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVL  167 (224)
T KOG3230|consen   89 IQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVL  167 (224)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            55544444444444443   33344433344455666666666666666666666666655445555555555554443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.49  E-value=0.043  Score=47.16  Aligned_cols=139  Identities=16%  Similarity=0.285  Sum_probs=89.5

Q ss_pred             CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy13382          9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK   74 (237)
Q Consensus         9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~   74 (237)
                      -+|...++...|.+..              ..+.|++++..++.+..+...++..|+++|+-+.||.++........++.
T Consensus        22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~  101 (221)
T PF04012_consen   22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE  101 (221)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            4777665555555444              44567888888888888999999999999999988888777666655544


Q ss_pred             HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhHH
Q psy13382         75 KF-----------MMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQ---MNLPQIQRILQEFEKQSEIMDMKE  140 (237)
Q Consensus        75 ~l-----------~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~---m~l~ki~~~M~ef~~q~e~~~~~~  140 (237)
                      .|           ..++.+|..+..++..+.+-..+..+-..++++-..++..   +++......++.++...+.+.-..
T Consensus       102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a  181 (221)
T PF04012_consen  102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARA  181 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence            43           3355555556666666666666665555555555555544   455555555555555555555555


Q ss_pred             HHHhhhh
Q psy13382        141 EMMNDAM  147 (237)
Q Consensus       141 e~m~d~~  147 (237)
                      +.+.+..
T Consensus       182 ~a~~el~  188 (221)
T PF04012_consen  182 EASAELA  188 (221)
T ss_pred             HHHHHhc
Confidence            5555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.44  E-value=0.058  Score=46.64  Aligned_cols=127  Identities=13%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Q psy13382          9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT-----   69 (237)
Q Consensus         9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~-----   69 (237)
                      .+|...++...+.++.              ..+.+++++..++....+...+++.|+++|+-+-||-.+..-...     
T Consensus        23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~  102 (219)
T TIGR02977        23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE  102 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            4887666666666654              335678888888888888999999999999988655443222111     


Q ss_pred             --HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy13382         70 --RKYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEI  135 (237)
Q Consensus        70 --rk~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~  135 (237)
                        ..++..    +..+..+|..+..+++.+++...+..+=..++.+...+|..+.--.+...+..|++-.++
T Consensus       103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence              111211    334555555556666666666555444444566655665555333334445555444444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1656|consensus

Probab=97.37  E-value=0.034  Score=47.57  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         25 AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD----LVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMA  100 (237)
Q Consensus        25 ~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~----lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~  100 (237)
                      ++-.|..-..-|++.+.-++.+|-.-.+.    .||.|+..    ++..=|.+.+|...-+||+++.+.|..+.-+.+-+
T Consensus        22 aI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA   97 (221)
T KOG1656|consen   22 AIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENA   97 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence            44444444555666666666666655442    25666543    44445566778899999999999999888877777


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHH---HHhhhhhhccC--ccccHHHHHHHHHHHHHHhchhh
Q psy13382        101 EAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEE---MMNDAMDDAMD--ADEDEDETNAVVTQVLDELGLQL  175 (237)
Q Consensus       101 ~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e---~m~d~~~~~~~--~~~~eeE~d~lv~qvldE~g~e~  175 (237)
                      +.=..+-.+|+..-+.|+--.-.--+|+.-+-|++....++   =|++++..-+.  .+.||+|+.++++.+..|.   +
T Consensus        98 ~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee---l  174 (221)
T KOG1656|consen   98 NTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE---L  174 (221)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH---H
Confidence            77777778888887777665544444455555555554444   46667776665  2468999999999988876   5


Q ss_pred             hhhccCCCCCCCCcC
Q psy13382        176 GDQLASIPDPASSMM  190 (237)
Q Consensus       176 ~~~L~~~P~~~~~~~  190 (237)
                      ...|-+++.++.++|
T Consensus       175 d~~ll~~~~p~v~LP  189 (221)
T KOG1656|consen  175 DKELLDIRAPPVPLP  189 (221)
T ss_pred             HHHHhccCCCCCCCC
Confidence            666666555544454

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.33  E-value=0.0025  Score=52.08  Aligned_cols=148  Identities=18%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         25 AMRDLDREKQHMEQQEKKLIADIKKMA---KEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAE  101 (237)
Q Consensus        25 ~~R~Lere~~kle~eekk~~~~iKkaa---kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~  101 (237)
                      ++..|...+.+|++..+++..+|++.-   ++-...+-+..|+.++|.++.+.   ....++.....+|+........+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999998763   33444556778888887776654   445677778888888888888888


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHhhhHHHHHhhhhhhccCcccc--HHHHHHHHHHHHHHhchhhhh
Q psy13382        102 AMKGCSRAMQNMNRQMNLPQIQRILQ--EFEKQSEIMDMKEEMMNDAMDDAMDADED--EDETNAVVTQVLDELGLQLGD  177 (237)
Q Consensus       102 am~~~~k~M~~~n~~m~l~ki~~~M~--ef~~q~e~~~~~~e~m~d~~~~~~~~~~~--eeE~d~lv~qvldE~g~e~~~  177 (237)
                      ....+..+|+..++.|+  ++...|+  ++..-++.+...-+.++. +++++.+..+  .+.-|+.++..|+++.-+...
T Consensus        79 ~~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~e-i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~  155 (171)
T PF03357_consen   79 SNQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDE-ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE  155 (171)
T ss_dssp             HHHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS-----------------TTSTTCHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999888876643  3443333  333444333333332222 2222322221  455566777777777655544


Q ss_pred             h
Q psy13382        178 Q  178 (237)
Q Consensus       178 ~  178 (237)
                      .
T Consensus       156 ~  156 (171)
T PF03357_consen  156 E  156 (171)
T ss_dssp             T
T ss_pred             h
Confidence            3

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3231|consensus

Probab=97.26  E-value=0.026  Score=46.83  Aligned_cols=158  Identities=18%  Similarity=0.298  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEG---QMESVKIMAKDLVRTRKYAKKFMMMKANIQ   84 (237)
Q Consensus        13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~-----iKkaakkg---~~~~aki~Ak~lvr~rk~~~~l~~~~aql~   84 (237)
                      -.+|...|.|-+.-|.++++-++||.|-++.-..     ++-.+|+=   ...-.|.||-        ..++..+.+|=-
T Consensus        18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~--------s~ki~s~~~QnK   89 (208)
T KOG3231|consen   18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAV--------SSKITSMSTQNK   89 (208)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhh--------hhhhhhhHHHHH
Confidence            3578888888888888888888888888876432     23233310   0011233332        223334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHH
Q psy13382         85 AVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV  164 (237)
Q Consensus        85 sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv  164 (237)
                      .+.+++..+.+|..++..|+..++.|.----.-+...++.--.+++  | .-.++.+.++|.|+..-|+++...=|..++
T Consensus        90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMe--m-TeEMiNDTLDdild~sgDeeEs~aiVNqVL  166 (208)
T KOG3231|consen   90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKME--M-TEEMINDTLDDILDGSGDEEESQAIVNQVL  166 (208)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh--h-HHHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence            4555565566666666666666665543222222333333322222  1 224677888888888777777788888899


Q ss_pred             HHHHHHhchhhhhhccCC
Q psy13382        165 TQVLDELGLQLGDQLASI  182 (237)
Q Consensus       165 ~qvldE~g~e~~~~L~~~  182 (237)
                      +.|-=|+.--+.. .|++
T Consensus       167 DEIGIEisgKma~-~P~a  183 (208)
T KOG3231|consen  167 DEIGIEISGKMAK-APSA  183 (208)
T ss_pred             HHhhhhhcchhcc-CCcc
Confidence            9998888877764 4433

>KOG3232|consensus

Probab=96.78  E-value=0.086  Score=44.13  Aligned_cols=175  Identities=17%  Similarity=0.221  Sum_probs=93.4

Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM---AKEGQMESVKIMAKDLVRTRKYAKKFMM   78 (237)
Q Consensus         2 ~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka---akkg~~~~aki~Ak~lvr~rk~~~~l~~   78 (237)
                      +.+|..||+.+++-|.+++-        +++- |+  |..|++.-|++-   +.+=.-+.|=..-.+.|+.=+...|+-.
T Consensus         9 ~~lf~LkF~sk~L~r~a~kc--------eKeE-K~--Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDA   77 (203)
T KOG3232|consen    9 NHLFDLKFTSKQLQRQAKKC--------EKEE-KA--EKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDA   77 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--------hhHH-HH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888888888776332        2211 11  122333444430   0000001111111223344455667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHH
Q psy13382         79 MKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDED  158 (237)
Q Consensus        79 ~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~ee  158 (237)
                      ..+++++....-+--.+|..+..+|.   .+|+.||=..=-.=+++-=.+|+.---..+..+.+|+++-.-.++.++.+.
T Consensus        78 VaaRvqTavtmr~Vt~sM~gVvK~md---~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~  154 (203)
T KOG3232|consen   78 VAARVQTAVTMRKVTKSMAGVVKSMD---SALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDS  154 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHH
Confidence            88888877666555666666666666   555555533222223334445655555666777888876544455555444


Q ss_pred             HHHHHHHHHHHHhchhhhhhc-cCCCCCCCCcC
Q psy13382        159 ETNAVVTQVLDELGLQLGDQL-ASIPDPASSMM  190 (237)
Q Consensus       159 E~d~lv~qvldE~g~e~~~~L-~~~P~~~~~~~  190 (237)
                      =....-+.---|+..++...+ +.+|.+....+
T Consensus       155 Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~~  187 (203)
T KOG3232|consen  155 LMQQVADEAGLELNQELPQNVVPAISVKTSAVV  187 (203)
T ss_pred             HHHHHHHHhchhhhhcCCCCCCCCcCCCCcccc
Confidence            444555555666766776665 56777665443

>KOG3229|consensus

Probab=96.61  E-value=0.4  Score=41.25  Aligned_cols=31  Identities=29%  Similarity=0.601  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKL   43 (237)
Q Consensus        13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~   43 (237)
                      -.+|+..|.|.+.+|.|.|+.++.++.-|+.
T Consensus        21 ~kiRke~r~ldrqir~iqree~kv~~~iK~a   51 (227)
T KOG3229|consen   21 SKIRKEGRQLDRQIRDIQREEEKVQKSIKQA   51 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888888888888888887776654

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=96.55  E-value=0.017  Score=48.06  Aligned_cols=156  Identities=16%  Similarity=0.284  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         19 QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNA   98 (237)
Q Consensus        19 ~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~   98 (237)
                      |..|+.++..|.-..+|-....+..+.+|-..++.|..+.||+.+.++|+-.+...=|.-+.--.+-+..++........
T Consensus         1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~   80 (165)
T PF03398_consen    1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            35677888888888888999999999999999999999999999999999999888877777777777777766655433


Q ss_pred             HHHHHHHHHH-HHHHHHhcCCHHHHHHHHH----HHHHHHHHhhhH--HHHHhhhhhhccCc-cccHHHHHHHHHHHHHH
Q psy13382         99 MAEAMKGCSR-AMQNMNRQMNLPQIQRILQ----EFEKQSEIMDMK--EEMMNDAMDDAMDA-DEDEDETNAVVTQVLDE  170 (237)
Q Consensus        99 ~~~am~~~~k-~M~~~n~~m~l~ki~~~M~----ef~~q~e~~~~~--~e~m~d~~~~~~~~-~~~eeE~d~lv~qvldE  170 (237)
                      .-..++.+.. .+-...+.-++|++..+=.    .|-++|...-+-  .-.++.-+=.-+.. .-+++.++..+..|+.|
T Consensus        81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e  160 (165)
T PF03398_consen   81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKE  160 (165)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence            3333333333 3333334347777655433    345555322111  01111111111111 11356788888888888


Q ss_pred             hchh
Q psy13382        171 LGLQ  174 (237)
Q Consensus       171 ~g~e  174 (237)
                      +|++
T Consensus       161 ~~i~  164 (165)
T PF03398_consen  161 YGIP  164 (165)
T ss_dssp             CT-S
T ss_pred             cCCC
Confidence            8874

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.64  E-value=1.4  Score=38.55  Aligned_cols=123  Identities=16%  Similarity=0.273  Sum_probs=75.6

Q ss_pred             CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy13382          9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK   74 (237)
Q Consensus         9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~   74 (237)
                      .+|+..+....+.+..              ..+.++|+..++.....+++.+.+.|+.+|+.+-|+    .++..+..+.
T Consensus        23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr----~al~~~~~le   98 (225)
T COG1842          23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR----EALEEKQSLE   98 (225)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHH
Confidence            4787665554444333              567889999999999999999999999999976544    4443333222


Q ss_pred             H---------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q psy13382         75 K---------------FMMMKANIQAVSLKIQTLRSQNAMA---EAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIM  136 (237)
Q Consensus        75 ~---------------l~~~~aql~sv~~~lq~a~s~~~~~---~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~  136 (237)
                      +               ...++.++..+..+|....+-..+.   .+...+...|..+...++.   ...|..|++.-++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~ki  175 (225)
T COG1842          99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKI  175 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHH
Confidence            2               3345555555555555554444444   4455555555555566666   55555555554444


Q ss_pred             hh
Q psy13382        137 DM  138 (237)
Q Consensus       137 ~~  138 (237)
                      ..
T Consensus       176 ee  177 (225)
T COG1842         176 EE  177 (225)
T ss_pred             HH
Confidence            43

>KOG1655|consensus

Probab=90.70  E-value=10  Score=32.60  Aligned_cols=150  Identities=15%  Similarity=0.260  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAK---EGQMESV-KIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ   96 (237)
Q Consensus        21 ~Lr~~~R~Lere~~kle~eekk~~~~iKkaak---kg~~~~a-ki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~   96 (237)
                      .|.-++-.++.-...++..-.+|..++.+.-.   +=...-+ -.+-+.++|.=|++.-|..++-+|+.-++.+..+.-+
T Consensus        16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            35667778888888888888888888876632   2211112 2233345555567777888888999888888777766


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382         97 NAMAEAMKGCSRAMQNMNRQMNLPQ----IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG  172 (237)
Q Consensus        97 ~~~~~am~~~~k~M~~~n~~m~l~k----i~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g  172 (237)
                      .+-.+.-..+..+|+..|+.|+-.-    |++ +++++.+|+++=....=|.++++  ..-..++-+.++|. --|+-+|
T Consensus        96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~-IedlQDem~Dlmd~a~EiQE~Lg--r~y~~peide~dL~-aELdaL~  171 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDK-IEDLQDEMEDLMDQADEIQEVLG--RNYNTPDIDEADLD-AELDALG  171 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHh--hccCCCCcCHHHHH-HHHHHHH
Confidence            6655555566778888888776543    444 46666676665555555555555  23456664444433 3344444


Q ss_pred             hh
Q psy13382        173 LQ  174 (237)
Q Consensus       173 ~e  174 (237)
                      -+
T Consensus       172 ~E  173 (218)
T KOG1655|consen  172 QE  173 (218)
T ss_pred             hH
Confidence            33

>KOG2911|consensus

Probab=88.35  E-value=18  Score=34.56  Aligned_cols=151  Identities=19%  Similarity=0.193  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ---MESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ   96 (237)
Q Consensus        20 r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~---~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~   96 (237)
                      ..+.-.+-.|-+-+.+|.++-..+.++|+++-++=.   .++-|..|...+|.|+-.++   -..++.+...+|++.-++
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK---~~er~~~~l~~l~~vl~~  305 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEK---DLERKVSSLNNLETVLSQ  305 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence            456777888889999999999999999998755332   34567777778877766554   334455555566777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh--hhhccCcc--ccHHHHHHHHHHHHHHhc
Q psy13382         97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA--MDDAMDAD--EDEDETNAVVTQVLDELG  172 (237)
Q Consensus        97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~--~~~~~~~~--~~eeE~d~lv~qvldE~g  172 (237)
                      ...+..=+-+-.+++.-+..++.-..+  +-.-++--+-++.+.+.++..  +++++...  ...+.-|+.|.+-|+++-
T Consensus       306 Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~  383 (439)
T KOG2911|consen  306 IDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLE  383 (439)
T ss_pred             HHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHH
Confidence            777766677778888877666554332  222233333333344443331  22222222  224677888999998885


Q ss_pred             hhh
Q psy13382        173 LQL  175 (237)
Q Consensus       173 ~e~  175 (237)
                      .|-
T Consensus       384 ~D~  386 (439)
T KOG2911|consen  384 ADE  386 (439)
T ss_pred             hcc
Confidence            444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=86.13  E-value=4.3  Score=37.54  Aligned_cols=69  Identities=26%  Similarity=0.458  Sum_probs=37.7

Q ss_pred             CccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Q psy13382          1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE-----GQMESVKIMAKDLVRT   69 (237)
Q Consensus         1 m~~~Fg~k-~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakk-----g~~~~aki~Ak~lvr~   69 (237)
                      |++|||++ ++|.|.+|..+-.|-+-.-.-++...+...+-.|.-.+||.-+-.     .+.+.+-.+|.++++.
T Consensus         1 M~FlF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~   75 (335)
T PF08569_consen    1 MSFLFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS   75 (335)
T ss_dssp             -----------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence            88999975 699999998866665532222455566666666777777776653     2345677888888764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.20  E-value=12  Score=28.12  Aligned_cols=48  Identities=8%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13382         69 TRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQ  116 (237)
Q Consensus        69 ~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~  116 (237)
                      +++...||-+...|+.+|..-++.-.-...+...+..+..++..++..
T Consensus         8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~   55 (89)
T COG1937           8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE   55 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888999999999999998888899998888888888887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		4e-08
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		5e-08
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		1e-04

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 4   LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
           LFG+  +  P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ +   +
Sbjct: 5   LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 64
Query: 62  MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
           +AK+++R+RK   K    KA++ +V + ++   +   +A +++  +  M+ M   + +P+
Sbjct: 65  LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 124
Query: 122 IQRILQEFEKQ 132
           IQ  ++E  K+
Sbjct: 125 IQATMRELSKE 135

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 73/122 (59%)
Query: 11  PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70
           P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ +   ++AK+++R+R
Sbjct: 8   PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR 67
Query: 71  KYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFE 130
           K   K    KA++ +V + ++   +   +A +++  +  M+ M   + +P+IQ  ++E  
Sbjct: 68  KAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELS 127
Query: 131 KQ 132
           K+
Sbjct: 128 KE 129

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 11  PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70
           P+E++ +    + K  R +DR+ + ++++E+K+   +K  AK+GQ +   ++AK+ +R+R
Sbjct: 8   PKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXIRSR 67
Query: 71  KYAKKFMMMKANIQAVSL----KIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRIL 126
           K   K    KA+  +V      ++  LR   ++ ++ +   +A Q++   + +P+IQ   
Sbjct: 68  KAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTE-VXKAXQSL---VKIPEIQATX 123
Query: 127 QEFEKQ 132
           +E  K+
Sbjct: 124 RELSKE 129
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	4e-40
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	2e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  136 bits (343), Expect = 4e-40
 Identities = 50/230 (21%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 6   GRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
            ++  P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ +   ++AK+
Sbjct: 3   MQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62

Query: 66  LVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRI 125
           ++R+RK   K    KA++ +V + ++   +   +A +++  +  M+ M   + +P+IQ  
Sbjct: 63  MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122

Query: 126 LQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDP 185
           ++E  K+     + EEM+ D  +   D +E E+E    + ++L E+      +  S    
Sbjct: 123 MRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTD 182

Query: 186 ASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLR 235
           A       G    +                      +A   +Q+RL  LR
Sbjct: 183 ALPEPEPPGAMAAS---------------EDEEEEEEALEAMQSRLATLR 217

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  133 bits (335), Expect = 2e-39
 Identities = 42/174 (24%), Positives = 95/174 (54%)

Query: 8   KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67
           +  P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ +   ++AK+++
Sbjct: 5   EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 64

Query: 68  RTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQ 127
           R+RK   K    KA++ +V + ++   +   +A +++  +  M+ M   + +P+IQ  ++
Sbjct: 65  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 124

Query: 128 EFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLAS 181
           E  K+     + EEM+ D  +   D +E E+E    + ++L E+      +  S
Sbjct: 125 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 26/254 (10%), Positives = 71/254 (27%), Gaps = 81/254 (31%)

Query: 3   WL-FGRKITPEEMLRKNQRALNKAMRDL------------------DREKQHMEQQEKK- 42
           WL      +PE +L   Q+ L +   +                      ++ ++ +  + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 43  --LIAD---IKKMAKEGQMESVKIMAKDLVRTR----------KYAKKFMMMKAN----- 82
             L+       K        +  +  K L+ TR                 +   +     
Sbjct: 246 CLLVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 83  -------IQAVSLKIQTLRSQ----NAMAEAMKGCSRAMQNMN------RQMNLPQIQRI 125
                  ++ +  + Q L  +    N    ++   + ++++        + +N  ++  I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 126 LQEFEKQSEIMDMKEEMMNDAM--DDA-------------MDADEDEDETNAVVTQVLDE 170
           ++      E  + ++     ++    A             +   +     N +    L  
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-- 416

Query: 171 LGLQLGDQLASIPD 184
           +  Q  +   SIP 
Sbjct: 417 VEKQPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 30/202 (14%), Positives = 75/202 (37%), Gaps = 40/202 (19%)

Query: 22  LNKAMRDLDREKQHMEQQEKKLI--ADIKKMAKEGQMESVKIMAKDLVRTR--KYAKKFM 77
            +  + + D   + ++   K ++   +I  +       S  +     + ++  +  +KF+
Sbjct: 26  EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 78  --MMKANIQAVSLKIQTLRSQNAMAEAM-KGCSRAMQNMNR---QMNLP------QIQRI 125
             +++ N + +   I+T + Q +M   M       + N N+   + N+       ++++ 
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 126 LQEFEKQSEIM--DM----KEEMMNDAMDD-----AMD--------ADEDEDETNAVVTQ 166
           L E      ++   +    K  +  D          MD         + +  ET   V +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLE 200

Query: 167 VLDELGLQLGDQLASIPDPASS 188
           +L +L  Q+     S  D +S+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSN 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	99.02
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.37
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	98.07
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	97.73
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.63
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	97.15
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.11
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	96.97
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	95.91
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	93.97
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	83.68
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	81.14

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-52  Score=355.85  Aligned_cols=177  Identities=24%  Similarity=0.434  Sum_probs=140.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV   86 (237)
Q Consensus         7 ~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv   86 (237)
                      .++||+|++|+|+|.||+++|+|+|++++|+++|++++.+||+++|+||+++|||||+++||+|+++.+||.++++|++|
T Consensus         4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV   83 (218)
T 3frt_A            4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV   83 (218)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHH
Q psy13382         87 SLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQ  166 (237)
Q Consensus        87 ~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~q  166 (237)
                      +++|++++++.+|+++|++++++|+.||++||||+|+.+|++|++||+++|+++|||+|+|+++++++++++|+|++|++
T Consensus        84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k  163 (218)
T 3frt_A           84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR  163 (218)
T ss_dssp             HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             HHHHhchhhhhhccCCCCCC
Q psy13382        167 VLDELGLQLGDQLASIPDPA  186 (237)
Q Consensus       167 vldE~g~e~~~~L~~~P~~~  186 (237)
                      ||+|+|   .++|..+|++.
T Consensus       164 VldEi~---~~~l~~~p~~~  180 (218)
T 3frt_A          164 ILFEIT---AGALGKAPSKV  180 (218)
T ss_dssp             HHHTC---------------
T ss_pred             HHHHHh---HhHhhcCCCCC
Confidence            999998   46788888753

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=1.1e-46  Score=315.16  Aligned_cols=177  Identities=24%  Similarity=0.429  Sum_probs=141.7

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANI   83 (237)
Q Consensus         4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql   83 (237)
                      +|++ |||+|.+|+|++.||+++|+|+|++.+|++++++++.+||+++++|++++|||||+++||+|+++.+||.++++|
T Consensus         2 ~~~~-~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l   80 (179)
T 2gd5_A            2 AMAE-KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM   80 (179)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHH
Q psy13382         84 QAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAV  163 (237)
Q Consensus        84 ~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~l  163 (237)
                      ++|+++|+++.++..++++|++++++|+.+|+.||+++|+.+|++|+++++++|+++|+|+|+|+++++++++++|+|++
T Consensus        81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~  160 (179)
T 2gd5_A           81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME  160 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             HHHHHHHhchhhhhhccCCCC
Q psy13382        164 VTQVLDELGLQLGDQLASIPD  184 (237)
Q Consensus       164 v~qvldE~g~e~~~~L~~~P~  184 (237)
                      |++||+|+|+   ++|+.+|+
T Consensus       161 v~kVl~E~~~---~~l~~~P~  178 (179)
T 2gd5_A          161 IDRILFEITA---GALGKAPS  178 (179)
T ss_dssp             HHHTTCCC-------------
T ss_pred             HHHHHHHhhH---hhcccCCC
Confidence            9999999985   46776665

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=99.02  E-value=8e-12  Score=82.90  Aligned_cols=50  Identities=24%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhchhhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382        159 ETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR  236 (237)
Q Consensus       159 E~d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~  236 (237)
                      +||+||+||+||+|+|++..|+.+|.+..  +.+                          ....++|+|.+||++||+
T Consensus         1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~--~~~--------------------------~~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            1 QVDMLLQEMADEAGLDLNMELPQGQTGSV--GTS--------------------------VASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCCHHHHHHHHHTTCC---------CHHH--HHH--------------------------HHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHhCchHHhhccccccccc--CCC--------------------------CCcccHHHHHHHHHHHhC
Confidence            36899999999999999999988776431  111                          013458999999999995

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.37  E-value=1.6e-06  Score=65.67  Aligned_cols=55  Identities=18%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCccccHHHHHHHHHHHHHH
Q psy13382        116 QMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD--DAMDADEDEDETNAVVTQVLDE  170 (237)
Q Consensus       116 ~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~--~~~~~~~~eeE~d~lv~qvldE  170 (237)
                      .|++++|..+|+++..+++..+.|+++|+..++  +.+++++.+.|+++|....+++
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~   58 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK   58 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999874  2233333344455544444444

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=98.07  E-value=6.1e-07  Score=60.12  Aligned_cols=16  Identities=50%  Similarity=0.900  Sum_probs=13.7

Q ss_pred             CcHHHHHHHHHhhhcC
Q psy13382        222 DADADLQARLDNLRRE  237 (237)
Q Consensus       222 ~~ed~L~~RL~~Lr~~  237 (237)
                      ..|||||+||++||++
T Consensus        38 ~~ddDLQARLdsLRR~   53 (54)
T 2v6x_B           38 NPDDDLQARLNTLKKQ   53 (54)
T ss_dssp             -CCHHHHHHHHHHHCC
T ss_pred             CchHHHHHHHHHhccC
Confidence            4589999999999985

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=97.73  E-value=1.7e-05  Score=67.52  Aligned_cols=147  Identities=18%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSL   88 (237)
Q Consensus        14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~-----iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~   88 (237)
                      .||...|.|.+.++.|+++-+++..+-|+.-.+     +|-.|+  +.=..|-+...+++.   ..+|.....+|+...+
T Consensus        18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk--elVR~Rk~~~rl~~~---kaqL~sV~~rlqt~~s   92 (218)
T 3frt_A           18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK--EMIRSRKAVSKLYAS---KAHMNSVLMGMKNQLA   92 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            455555556666666666555555554443322     222222  222223233333322   2344445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHH
Q psy13382         89 KIQTLRSQNAMAEAMKGCSRAM--QNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQ  166 (237)
Q Consensus        89 ~lq~a~s~~~~~~am~~~~k~M--~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~q  166 (237)
                      ..+.+.++..++.+|+.+.+.|  ..+.+.|  .++++   +|.+--..-++++++|+++++...++++.+++++.+++.
T Consensus        93 ~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM--~efek---E~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldE  167 (218)
T 3frt_A           93 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATM--RELSK---EMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFE  167 (218)
T ss_dssp             CC----CCCCCHHHHHHHHHSTTSHHHHHHH--HHHHH---HHHHHSCC----------------CTTSTTTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH---HHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHH
Confidence            5455555555555555555554  3333332  22222   233322233445555555554433344445555555555


Q ss_pred             HHHH
Q psy13382        167 VLDE  170 (237)
Q Consensus       167 vldE  170 (237)
                      +...
T Consensus       168 i~~~  171 (218)
T 3frt_A          168 ITAG  171 (218)
T ss_dssp             C---
T ss_pred             HhHh
Confidence            5544

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.63  E-value=1.7e-05  Score=65.49  Aligned_cols=148  Identities=14%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT-RKYAKKFMMMKANIQAVSLKIQTLRSQNAM   99 (237)
Q Consensus        21 ~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~-rk~~~~l~~~~aql~sv~~~lq~a~s~~~~   99 (237)
                      .||...+.|.+.++.|+++..+++.+-|+....= ..+++--.++..|. =+...+.-+...+|-...++|++.....+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999998888877663310 11222111223332 234455566788888899999999999888


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHh
Q psy13382        100 AEAMKGCSRAMQNMNRQMNLPQIQRIL-----QEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDEL  171 (237)
Q Consensus       100 ~~am~~~~k~M~~~n~~m~l~ki~~~M-----~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~  171 (237)
                      ..++..++.+|+...+.|+.  +...|     ..+..+|++--..-++++++|++.+++..++++.+++++.+++.+
T Consensus        90 ~~~~~~v~~am~~~~~~M~~--~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHHTSSCCCCSHHHHT--TTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            88888888888777655432  22333     334445555555555568899988876656566666666666555

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=97.15  E-value=0.023  Score=47.21  Aligned_cols=166  Identities=7%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382          3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKAN   82 (237)
Q Consensus         3 ~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aq   82 (237)
                      .+||..+.+    -+.+..|+.++-.|.=-.+|-+...++.+.+|-..++.|..+.||+-+.++||-.+...=|.-+---
T Consensus         2 ~mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilEly   77 (191)
T 3frr_A            2 HMLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELY   77 (191)
T ss_dssp             --CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478887764    3677778888888887778888888899999999999999999999999999999988776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-CCHHHHHHHH----HHHHHHHHHhhh------HHHHHhhhhhhc
Q psy13382         83 IQAVSLKIQTLRSQNAMAEAMKGCS-RAMQNMNRQ-MNLPQIQRIL----QEFEKQSEIMDM------KEEMMNDAMDDA  150 (237)
Q Consensus        83 l~sv~~~lq~a~s~~~~~~am~~~~-k~M~~~n~~-m~l~ki~~~M----~ef~~q~e~~~~------~~e~m~d~~~~~  150 (237)
                      .+-+..++.....+...-..++.+. ..+=...+. -++|++..+=    .+|-++|...-+      +.+.+-.-+.. 
T Consensus        78 CelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~-  156 (191)
T 3frr_A           78 CDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSV-  156 (191)
T ss_dssp             HHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCC-
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCC-
Confidence            6666666555544333333333333 344445554 6888886554    445555554311      11111112221 


Q ss_pred             cCccccHHHHHHHHHHHHHHhchhh
Q psy13382        151 MDADEDEDETNAVVTQVLDELGLQL  175 (237)
Q Consensus       151 ~~~~~~eeE~d~lv~qvldE~g~e~  175 (237)
                        ..-+.+-++..+..|+.++|++.
T Consensus       157 --~~P~~~lv~~yL~EIA~~y~V~w  179 (191)
T 3frr_A          157 --EAPPKILVERYLIEIAKNYNVPY  179 (191)
T ss_dssp             --SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             --CCcCHHHHHHHHHHHHHHcCCCC
Confidence              12245678888888888888765

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.11  E-value=0.016  Score=41.48  Aligned_cols=74  Identities=14%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy13382         14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK-FMMMKANIQAVSLKIQT   92 (237)
Q Consensus        14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~-l~~~~aql~sv~~~lq~   92 (237)
                      .++++...|+.....|++....|+..-.......|+++ .+|    |.-|..++|.+|+++. |-...+++..+..++.+
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667778888888899988999988888888899888 556    4478899999998877 55566677776666544

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.0005  Score=46.40  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHH
Q psy13382        117 MNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE  170 (237)
Q Consensus       117 m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE  170 (237)
                      ||+.+|..+++++...++..+.++++|+.+++--..++.++++++++++.+.+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            588999999999999999999999999999873222356789999999888877

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=95.91  E-value=0.26  Score=40.93  Aligned_cols=160  Identities=6%  Similarity=0.122  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382         13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT   92 (237)
Q Consensus        13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~   92 (237)
                      ...-+.+..|+.++-.|.=-.+|-+...+..+.+|-..++.|..+.||+-+.++||-.+.+.=|.-+---.+-+..++..
T Consensus         7 ~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~l   86 (193)
T 3ggy_A            7 PFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQV   86 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557888899999999888889999999999999999999999999999999999998877665555555555555444


Q ss_pred             HHH--------HHHHHHHHHHHH-HHHHHHHhcCCHHHHHHH----HHHHHHHHHHh------hhHHHHHhhhhhhccCc
Q psy13382         93 LRS--------QNAMAEAMKGCS-RAMQNMNRQMNLPQIQRI----LQEFEKQSEIM------DMKEEMMNDAMDDAMDA  153 (237)
Q Consensus        93 a~s--------~~~~~~am~~~~-k~M~~~n~~m~l~ki~~~----M~ef~~q~e~~------~~~~e~m~d~~~~~~~~  153 (237)
                      ...        ....-..++.+. ..+=...+.-+++++..+    +.+|-++|...      |+-..++.- +..   .
T Consensus        87 l~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~  162 (193)
T 3ggy_A           87 INDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---S  162 (193)
T ss_dssp             HTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---C
T ss_pred             HHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---C
Confidence            433        222222333333 333444454688887554    34455555432      222222222 221   1


Q ss_pred             cccHHHHHHHHHHHHHHhchhhh
Q psy13382        154 DEDEDETNAVVTQVLDELGLQLG  176 (237)
Q Consensus       154 ~~~eeE~d~lv~qvldE~g~e~~  176 (237)
                      .-+.+-++..+..|+.++|++.+
T Consensus       163 ~P~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          163 VPKEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCC
Confidence            12467788999999999998765

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=93.97  E-value=0.026  Score=32.48  Aligned_cols=16  Identities=31%  Similarity=0.524  Sum_probs=13.9

Q ss_pred             CCcHHHHHHHHHhhhc
Q psy13382        221 SDADADLQARLDNLRR  236 (237)
Q Consensus       221 ~~~ed~L~~RL~~Lr~  236 (237)
                      .+.||.|.+||++||.
T Consensus        14 eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           14 DEKEDKLAQRLRALRG   29 (29)
T ss_pred             chhhHHHHHHHHHHcC
Confidence            5668999999999993

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=83.68  E-value=0.32  Score=30.11  Aligned_cols=10  Identities=50%  Similarity=0.800  Sum_probs=8.9

Q ss_pred             HHHHHHhhhc
Q psy13382        227 LQARLDNLRR  236 (237)
Q Consensus       227 L~~RL~~Lr~  236 (237)
                      ++.||++||.
T Consensus        31 MqsRLaALRS   40 (40)
T 2xze_Q           31 MQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            7889999995

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=81.14  E-value=1  Score=30.01  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=15.5

Q ss_pred             HHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382        133 SEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG  172 (237)
Q Consensus       133 ~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g  172 (237)
                      |+..+.|+++|+.+++  +. +.+|+|+++++..+.+|..
T Consensus         1 ~e~a~EIqealsr~~g--~~-diDEdEL~aELe~LeqE~~   37 (57)
T 2lxm_B            1 MEDANEINEALSRSYG--TP-ELDEDDLEAELDALGDELL   37 (57)
T ss_dssp             ---------------C--CC-CCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCC--CC-CCCHHHHHHHHHHHHHHHh
Confidence            4567788999999876  33 4677888888888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00