Psyllid ID: psy13413

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
LFHKLTSLGLGLVTDVRVFLSHADHDTLVAGSADNGGEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQATPTTTPTPQLTPQLTPPC
ccccccccccccccEEEEEEEcccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEccccccccEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEcccccEEEHHHHHHHHHcccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEcccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccccHHHccccHHHHHHHHHHHHHHHHHHHHcHHEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccEEEEEcccEEEccccEEEEEEEccccccccccccccccccc
LFHKLTSLGLGLVTDVRVFLShadhdtlvagsadnggehgtggiisgksglahtgsvvdneggnfFVTHVDILQATVAHKASFISLveaspkltlvdmpgwaglggvryvppawgatdtdQAKAELNRLNIQVVRTLRtsdaafslgegtdglacvrfgmVTAETDITELLSLVEETGQQEEESWKFIDSMAeihhsprrLTAIDYVWTQLKVFVQCSLvnwwspvdkdptrvkgrtldltagrieTTENIYKYhaqatptttptpqltpqltppc
lfhkltslglgLVTDVRVFLSHADHDTLVagsadnggeHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSdaafslgegtdglACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVnwwspvdkdptrvkgrtldltagrieTTENIYKYHaqatptttptpqltpqltppc
LFHKLTSLGLGLVTDVRVFLSHADHDTLVAGSADNggehgtggiisgKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQAtptttptpqltpqltppC
****LTSLGLGLVTDVRVFLSHADHDTLVAGS*******GTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET*****ESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHA********************
***KLTSLGLGLVTDVRVFLSHADHDTLVAGSADNGGEHGTGGIISGKSGLAHT*SVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPP******************IQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET*Q*******FIDSMAEIHHSPRRL****YVWTQLKVFVQCSLVNWWSPVDK*****KGRTLDLTAGRIETTENI*************************
LFHKLTSLGLGLVTDVRVFLSHADHDTLVAGSADNGGEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQATP****************
*FHKLTSLGLGLVTDVRVFLSHADHDTLVAGSADNGGEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQAT*****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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LFHKLTSLGLGLVTDVRVFLSHADHDTLVAGSADNGGEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQATPTTTPTPQLTPQLTPPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
A7MBC2787 Pyridoxal-dependent decar yes N/A 0.702 0.246 0.293 1e-16
Q6P996788 Pyridoxal-dependent decar yes N/A 0.688 0.241 0.316 1e-15
Q99K01787 Pyridoxal-dependent decar no N/A 0.670 0.235 0.279 2e-14
Q6DF78782 Pyridoxal-dependent decar N/A N/A 0.648 0.228 0.286 7e-14
Q66HY8751 Pyridoxal-dependent decar yes N/A 0.692 0.254 0.283 1e-12
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Bos taurus GN=PDXDC1 PE=2 SV=1 Back     alignment and function desciption
 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 38/232 (16%)

Query: 68  THVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELN 127
           + + +L  T+  +  F   VEA+  L  VD P W G+G VRY        + D++  +L+
Sbjct: 485 SKLPVLTCTLQLREEFKQEVEATAGLLYVDDPNWPGIGVVRY-----EHANDDKSSLKLD 539

Query: 128 ----RLNIQVVRTLRT--SDAAFSLG-EGTDGLACVRFGMVTAETDITELLSLVEETGQQ 180
               +++  +++ L    SD  F +G E     +C+  GM + + DI+EL+  +  T ++
Sbjct: 540 PEGEKIHAGLLKKLNELESDLTFKMGPEYKSMKSCIYIGMASDDIDISELVETIAVTARE 599

Query: 181 EEESWKFIDSMAEIHHSPRRLTAIDYVWTQLK---------------VFVQCSLVNWWSP 225
            EE  + +++M E+         I     QL+               + V  S++NW+SP
Sbjct: 600 IEEDSRLLENMTEVVRK-----GIQEAQVQLQKANEERLLEEGVLRQIPVVGSVLNWFSP 654

Query: 226 VDKDPTRVKGRTLDLTAGRIETTENIYKYHAQA---TPTTTPTPQLTPQLTP 274
           V       KGRT +LTAG +E+TE+ Y Y  Q    TP  TPT   T Q  P
Sbjct: 655 VQASQ---KGRTFNLTAGSLESTEHTYVYKVQGSGVTPPQTPTGTRTKQRLP 703

Bos taurus (taxid: 9913)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2 Back     alignment and function description
>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Mus musculus GN=Pdxdc1 PE=1 SV=2 Back     alignment and function description
>sp|Q6DF78|PDXD1_XENLA Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Xenopus laevis GN=pdxdc1 PE=2 SV=1 Back     alignment and function description
>sp|Q66HY8|PDXD1_DANRE Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Danio rerio GN=pdxdc1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
328788766 797 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.243 0.546 1e-53
380027761 798 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.243 0.546 1e-53
350424592 798 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.243 0.541 8e-53
383855170 798 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.243 0.541 1e-52
332022029 808 Pyridoxal-dependent decarboxylase domain 0.717 0.245 0.526 1e-52
307201067 810 Pyridoxal-dependent decarboxylase domain 0.702 0.239 0.541 2e-52
307168915 823 Pyridoxal-dependent decarboxylase domain 0.695 0.233 0.532 7e-52
345487629 802 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.241 0.536 7e-52
345487627 817 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.237 0.536 8e-52
340728508 800 PREDICTED: pyridoxal-dependent decarboxy 0.702 0.242 0.536 2e-51
>gi|328788766|ref|XP_393418.3| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 139/205 (67%), Gaps = 11/205 (5%)

Query: 69  HVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNR 128
            ++ILQATV HKA+F+ LV  +  L LV+MPGWAGLGGVRY PP W    TDQAK ELNR
Sbjct: 532 QIEILQATVEHKATFVRLVSENDSLHLVEMPGWAGLGGVRYAPPTWIHVMTDQAKEELNR 591

Query: 129 LNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFI 188
           LN Q+V  LR +DAAFSLGEG DGLACVRFGMVT +TD+ ELLSLV + GQ+ E S K +
Sbjct: 592 LNTQLVEALRNTDAAFSLGEGADGLACVRFGMVTQDTDVAELLSLVLQVGQEVEASSKLL 651

Query: 189 DSMAEIHHSPRRLTAIDY-------VWTQ---LKVFVQCSLVNWWSPVDKDPTRVKGRTL 238
           D+++E+          D        +W +     V V  + VNWWSP  K+ T V+GR+L
Sbjct: 652 DTISEVVKRGIEAAQTDLERENAEKLWQEGILRHVPVVGTFVNWWSPPSKE-TGVRGRSL 710

Query: 239 DLTAGRIETTENIYKYHAQATPTTT 263
           +L AG +E+TENIYKYH Q  P +T
Sbjct: 711 NLQAGVVESTENIYKYHMQLQPNST 735

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380027761|ref|XP_003697587.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|350424592|ref|XP_003493847.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383855170|ref|XP_003703090.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332022029|gb|EGI62355.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307201067|gb|EFN80999.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307168915|gb|EFN61815.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345487629|ref|XP_001604406.2| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345487627|ref|XP_003425730.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340728508|ref|XP_003402564.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
FB|FBgn0031174852 CG1486 [Drosophila melanogaste 0.681 0.220 0.522 3.8e-46
WB|WBGene00007593802 C14H10.3 [Caenorhabditis elega 0.659 0.226 0.304 8.1e-22
UNIPROTKB|E1C4Q3794 PDXDC1 "Uncharacterized protei 0.666 0.231 0.318 1.4e-16
UNIPROTKB|E7EMH5697 PDXDC1 "Pyridoxal-dependent de 0.641 0.253 0.313 3.6e-15
UNIPROTKB|E7EPL4760 PDXDC1 "Pyridoxal-dependent de 0.641 0.232 0.313 4.7e-15
UNIPROTKB|H3BNZ1761 PDXDC1 "Pyridoxal-dependent de 0.641 0.232 0.313 4.8e-15
UNIPROTKB|J3KNK7773 PDXDC1 "Pyridoxal-dependent de 0.641 0.228 0.313 5e-15
UNIPROTKB|Q6P996788 PDXDC1 "Pyridoxal-dependent de 0.641 0.224 0.313 5.3e-15
UNIPROTKB|H3BND4806 PDXDC1 "Pyridoxal-dependent de 0.641 0.219 0.313 5.6e-15
UNIPROTKB|F1PRF8788 PDXDC1 "Uncharacterized protei 0.659 0.230 0.299 1.8e-14
FB|FBgn0031174 CG1486 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 491 (177.9 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 104/199 (52%), Positives = 135/199 (67%)

Query:    69 HVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNR 128
             HVDIL+AT+ HKA FI LVE S  L LV +P WAG+GGVR+VP  W +  TDQAK ELN+
Sbjct:   546 HVDILRATIKHKARFIHLVECSDVLRLVPLPEWAGMGGVRFVPEGWESLLTDQAKTELNK 605

Query:   129 LNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFI 188
             LNI +V  L+++D AFSLGEGTDGL CVRFGMVT ET++ ELL LV   G+  +E+ + +
Sbjct:   606 LNIDLVEALKSTDNAFSLGEGTDGLICVRFGMVTHETEVEELLDLVVTVGKSVQENSRVL 665

Query:   189 DSMAEIHHSPRRLTAIDY-------VWTQ--LK-VFVQCSLVNWWSPVDKDPTRVKGRTL 238
             D+M+EI          D        +W +  L+ V V   + NWWSP  K+ + +KGR+L
Sbjct:   666 DTMSEIVKKGIEAVTADLQRESEEKLWQEGILRHVPVVGRVFNWWSPPAKE-SGIKGRSL 724

Query:   239 DLTAGRIETTENIYKYHAQ 257
             +LT G +E+TENIYKYH Q
Sbjct:   725 NLTQGVVESTENIYKYHMQ 743
GO:0019752 "carboxylic acid metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0016831 "carboxy-lyase activity" evidence=IEA
WB|WBGene00007593 C14H10.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4Q3 PDXDC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7EMH5 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EPL4 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BNZ1 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNK7 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P996 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BND4 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRF8 PDXDC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG0630|consensus838 100.0
PLN02590539 probable tyrosine decarboxylase 99.41
PLN02880490 tyrosine decarboxylase 99.2
TIGR03799522 NOD_PanD_pyr putative pyridoxal-dependent aspartat 98.9
KOG0628|consensus511 98.77
TIGR01788431 Glu-decarb-GAD glutamate decarboxylase. This model 97.98
TIGR03811608 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu 97.12
COG0076460 GadB Glutamate decarboxylase and related PLP-depen 96.79
cd06450345 DOPA_deC_like DOPA decarboxylase family. This fami 96.67
TIGR01979403 sufS cysteine desulfurases, SufS subfamily. This m 92.43
PF00282373 Pyridoxal_deC: Pyridoxal-dependent decarboxylase c 91.87
PRK10874401 cysteine sulfinate desulfinase; Provisional 91.73
TIGR03392398 FeS_syn_CsdA cysteine desulfurase, catalytic subun 88.8
TIGR00461939 gcvP glycine dehydrogenase (decarboxylating). This 88.32
PLN02721353 threonine aldolase 86.74
KOG0629|consensus510 85.68
TIGR01366361 serC_3 phosphoserine aminotransferase, putative. T 83.75
>KOG0630|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-62  Score=483.60  Aligned_cols=227  Identities=37%  Similarity=0.648  Sum_probs=210.9

Q ss_pred             CcccCCccceeecceeec--cchhhhhhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecC----CCCCC
Q psy13413         43 GIISGKSGLAHTGSVVDN--EGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVP----PAWGA  116 (276)
Q Consensus        43 ~~~~~~~~~~~~~~~~d~--~~~~~l~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP----~~w~~  116 (276)
                      +.-|-+-|+|---+-+|+  .|+..|+++++|+++||.+|..|.++++-+++|++++.++|||+|+|||+|    ++|++
T Consensus       550 RfCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi~eWAGiGaV~fiPsivkE~~~e  629 (838)
T KOG0630|consen  550 RFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPIPEWAGIGAVCFIPSIVKEGNEE  629 (838)
T ss_pred             EecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeeccccccccceEecccccccCCHh
Confidence            445677777777777776  578999999999999999999999999999999999999999999999999    89999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhcCCcceeccccc-CCceeEEEEecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHh
Q psy13413        117 TDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT-DGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIH  195 (276)
Q Consensus       117 ~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~-~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~v  195 (276)
                      ..+|++|+|+|+||.+||+.|+++|.+||+|++. +|..||||||+|+++|++||+|+|++.|+|||+|||+||+|+|+|
T Consensus       630 ~~nDiaKqeinhLNidLVeaLKStDaAFS~Gd~Tr~Gl~CVkFGMlsd~kdleeLldlVaqkGKeieenqq~LDslaeii  709 (838)
T KOG0630|consen  630 DLNDIAKQEINHLNIDLVEALKSTDAAFSLGDCTRDGLICVKFGMLSDEKDLEELLDLVAQKGKEIEENQQVLDSLAEII  709 (838)
T ss_pred             HhhHHHHHHHhhccHHHHHHHhhhhhhcccCCccccceeEEEeccccchhhHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987 999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhHh-------hhc-----eecceeecCceeeecCCCCCCCCCcccceeeccCcceeehhhhhhhhhccCCCCC
Q psy13413        196 HSPRRLTAID-------YVW-----TQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQATPTTT  263 (276)
Q Consensus       196 rKGI~~A~~d-------~l~-----RqvPvv~~gSvvNW~SP~~k~~~~iKGRtfnL~~G~lesTE~~Yk~k~Q~~~~~~  263 (276)
                      |||||+|+.+       |||     ||+|||  ||++|||||+.|+.++||||.|||++|.+|+||++|||||||++..+
T Consensus       710 kkGIEAanaaLqkEndekL~nEGilRhlPim--Grl~NWWSP~a~ESq~IkGRafNLkqGemeeTd~ifKshknMdgaaa  787 (838)
T KOG0630|consen  710 KKGIEAANAALQKENDEKLQNEGILRHLPIM--GRLFNWWSPLAKESQGIKGRAFNLKQGEMEETDNIFKSHKNMDGAAA  787 (838)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhchhhhcchh--hhhhhccCCCCccccCcccceeccccccchhhHHHHHHhhcCccccC
Confidence            9999999986       665     999999  99999999999998899999999999999999999999999996554


Q ss_pred             C--CCCCCCC
Q psy13413        264 P--TPQLTPQ  271 (276)
Q Consensus       264 ~--~~~~~~~  271 (276)
                      +  +.+++||
T Consensus       788 ~pi~aNesP~  797 (838)
T KOG0630|consen  788 HPIPANESPP  797 (838)
T ss_pred             CCCCCCCCCC
Confidence            4  3444444

>PLN02590 probable tyrosine decarboxylase Back     alignment and domain information
>PLN02880 tyrosine decarboxylase Back     alignment and domain information
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase Back     alignment and domain information
>KOG0628|consensus Back     alignment and domain information
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase Back     alignment and domain information
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type Back     alignment and domain information
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] Back     alignment and domain information
>cd06450 DOPA_deC_like DOPA decarboxylase family Back     alignment and domain information
>TIGR01979 sufS cysteine desulfurases, SufS subfamily Back     alignment and domain information
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK10874 cysteine sulfinate desulfinase; Provisional Back     alignment and domain information
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA Back     alignment and domain information
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating) Back     alignment and domain information
>PLN02721 threonine aldolase Back     alignment and domain information
>KOG0629|consensus Back     alignment and domain information
>TIGR01366 serC_3 phosphoserine aminotransferase, putative Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
2okj_A504 Glutamate decarboxylase 1; PLP-dependent decarboxy 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 46/264 (17%), Positives = 83/264 (31%), Gaps = 67/264 (25%)

Query: 39  HGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVD--ILQATVAHKASFISLVEASPKLTLV 96
            G  G  SGK+ +A    V  +         +D  I    + +  S  +++E   KL   
Sbjct: 156 DGVLG--SGKTWVA--LDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 97  DMPGWAGLGGVRYVPPAWGATDTDQAKAELNRL--------------NIQVVRTLRTSDA 142
             P W                     +AEL RL              N+Q  +       
Sbjct: 209 IDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---- 260

Query: 143 AFSLGEGTDGLACVRFGMVTAETDITELLSLVEET---------GQQEEESW----KFID 189
           AF+L        C +  + T    +T+ LS    T             +E      K++D
Sbjct: 261 AFNLS-------C-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 190 SMAE------IHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAG 243
              +      +  +PRRL+ I      ++  +  +  + W  V+ D        ++ +  
Sbjct: 313 CRPQDLPREVLTTNPRRLSII---AESIRDGL--ATWDNWKHVNCDK---LTTIIESSLN 364

Query: 244 RIETTENIYKYHAQAT-PTTTPTP 266
            +E  E    +   +  P +   P
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIP 388
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
3vp6_A511 Glutamate decarboxylase 1; catalytic loop SWAP, ly 98.3
3k40_A475 Aromatic-L-amino-acid decarboxylase; PLP dependent 98.2
2jis_A515 Cysteine sulfinic acid decarboxylase; pyridoxal ph 98.14
2qma_A497 Diaminobutyrate-pyruvate transaminase and L-2,4- d 98.13
4e1o_A481 HDC, histidine decarboxylase; lyase; HET: PLP PVH; 98.12
2okj_A504 Glutamate decarboxylase 1; PLP-dependent decarboxy 98.05
1js3_A486 DDC;, DOPA decarboxylase; carbidopa, parkinson'S d 97.88
2dgk_A452 GAD-beta, GADB, glutamate decarboxylase beta; gadb 96.89
3hbx_A502 GAD 1, glutamate decarboxylase 1; calmodulin-bindi 96.52
4hvk_A382 Probable cysteine desulfurase 2; transferase and I 92.84
2fyf_A398 PSAT, phosphoserine aminotransferase; PLP-dependen 92.56
1vjo_A393 Alanine--glyoxylate aminotransferase; 17130350, AL 92.23
2z9v_A392 Aspartate aminotransferase; pyridoxamine, pyruvate 92.08
2dr1_A386 PH1308 protein, 386AA long hypothetical serine ami 92.04
3ffr_A362 Phosphoserine aminotransferase SERC; structural ge 91.71
2dkj_A407 Serine hydroxymethyltransferase; PLP dependent enz 91.45
4eb5_A382 Probable cysteine desulfurase 2; scaffold, transfe 90.99
3dzz_A391 Putative pyridoxal 5'-phosphate-dependent C-S LYA; 90.45
3lvm_A423 Cysteine desulfurase; structural genomics, montrea 90.3
1iug_A352 Putative aspartate aminotransferase; wild type, py 90.19
3op7_A375 Aminotransferase class I and II; PLP-dependent tra 89.38
1t3i_A420 Probable cysteine desulfurase; PLP-binding enzyme, 89.21
3isl_A416 Purine catabolism protein PUCG; pyridoxalphosphate 89.17
3pj0_A359 LMO0305 protein; structural genomics, joint center 88.94
3mad_A514 Sphingosine-1-phosphate lyase; carboxy-lyase activ 88.43
1elu_A390 L-cysteine/L-cystine C-S lyase; FES cluster biosyn 87.98
2ch1_A396 3-hydroxykynurenine transaminase; PLP-enzyme, kynu 87.85
1eg5_A384 Aminotransferase; PLP-dependent enzymes, iron-sulf 87.83
3mc6_A497 Sphingosine-1-phosphate lyase; carboxy-lyase activ 87.73
1kmj_A406 Selenocysteine lyase; persulfide perselenide NIFS 87.58
1v72_A356 Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 87.53
2bkw_A385 Alanine-glyoxylate aminotransferase 1; analine-gly 87.01
3nnk_A411 Ureidoglycine-glyoxylate aminotransferase; PLP-dep 86.65
2yrr_A353 Aminotransferase, class V; structural genomics, NP 86.44
3cai_A406 Possible aminotransferase; RV3778C; 1.80A {Mycobac 86.43
3dyd_A427 Tyrosine aminotransferase; PLP, SGC, structural ge 86.17
1vp4_A425 Aminotransferase, putative; structural genomics, j 85.92
3zrp_A384 Serine-pyruvate aminotransferase (AGXT); HET: PLP; 85.85
3kgw_A393 Alanine-glyoxylate aminotransferase; AAH25799.1, p 84.89
1j32_A388 Aspartate aminotransferase; HET: PLP; 2.10A {Phorm 84.72
1xi9_A406 Putative transaminase; alanine aminotransferase, s 84.04
3f0h_A376 Aminotransferase; RER070207000802, structural geno 83.82
3f9t_A397 TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L 83.78
1wyu_A438 Glycine dehydrogenase (decarboxylating) subunit 1; 83.73
3nra_A407 Aspartate aminotransferase; structural genomics, j 83.72
1c7n_A399 Cystalysin; transferase, aminotransferase, pyridox 83.5
3ffh_A363 Histidinol-phosphate aminotransferase; APC88260, l 83.44
1bw0_A416 TAT, protein (tyrosine aminotransferase); tyrosine 82.86
3ihj_A498 Alanine aminotransferase 2; helix, structural geno 82.76
3lws_A357 Aromatic amino acid beta-eliminating lyase/threoni 82.46
3kax_A383 Aminotransferase, classes I and II; PLP, C-S lyase 82.13
3aow_A448 Putative uncharacterized protein PH0207; protein-P 81.7
2vi8_A405 Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, 80.87
2huf_A393 Alanine glyoxylate aminotransferase; alpha and bet 80.72
2zc0_A407 Alanine glyoxylate transaminase; alanine:glyoxylat 80.7
3gbx_A420 Serine hydroxymethyltransferase; structural genomi 80.36
2c0r_A362 PSAT, phosphoserine aminotransferase; pyridoxal-5' 80.01
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* Back     alignment and structure
Probab=98.30  E-value=2.3e-06  Score=81.85  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             HHHHHhHHHHHHHHHHHhcCCCeeeec--CCCCceEEEEeecCCCCCCC-CchHHHHHHHHHHHHHHHHHhcCCcceecc
Q psy13413         71 DILQATVAHKASFISLVEASPKLTLVD--MPGWAGLGGVRYVPPAWGAT-DTDQAKAELNRLNIQVVRTLRTSDAAFSLG  147 (276)
Q Consensus        71 ~iL~~TI~lr~~F~elVe~~psLelVe--~~~waGLG~VRYvP~~w~~~-~~d~~k~ELnKLN~eLl~kLqesd~aFssG  147 (276)
                      .++....+++++|.+.+++.|+|+++.  .+.. ++.+|||.|....+. +.......+++.|.+|.++|.+.+.++...
T Consensus       389 ~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~-~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~  467 (511)
T 3vp6_A          389 NQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY  467 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSS-SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCe-EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            456778889999999999999999997  4555 889999999876543 334455679999999999999988776654


Q ss_pred             cccC-CceeEEEEec---CCcccHHHHHHHHHHHhHhHH
Q psy13413        148 EGTD-GLACVRFGMV---TAETDITELLSLVEETGQQEE  182 (276)
Q Consensus       148 ~~~~-G~~CVRfGMv---T~d~DV~ELVd~I~~~GrEIE  182 (276)
                      +... +..++|+++.   +++.||+.+++.|.+.|+++.
T Consensus       468 ~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~  506 (511)
T 3vp6_A          468 QPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH  506 (511)
T ss_dssp             EEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             EEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            3334 4579999985   788899999999999998875
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 Back     alignment and structure
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Back     alignment and structure
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Back     alignment and structure
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Back     alignment and structure
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Back     alignment and structure
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Back     alignment and structure
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Back     alignment and structure
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Back     alignment and structure
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* Back     alignment and structure
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Back     alignment and structure
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Back     alignment and structure
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Back     alignment and structure
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Back     alignment and structure
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Back     alignment and structure
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Back     alignment and structure
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 Back     alignment and structure
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Back     alignment and structure
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Back     alignment and structure
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Back     alignment and structure
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Back     alignment and structure
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Back     alignment and structure
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Back     alignment and structure
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Back     alignment and structure
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Back     alignment and structure
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Back     alignment and structure
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Back     alignment and structure
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Back     alignment and structure
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Back     alignment and structure
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Back     alignment and structure
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Back     alignment and structure
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Back     alignment and structure
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Back     alignment and structure
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Back     alignment and structure
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Back     alignment and structure
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Back     alignment and structure
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Back     alignment and structure
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Back     alignment and structure
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Back     alignment and structure
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Back     alignment and structure
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Back     alignment and structure
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Back     alignment and structure
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Back     alignment and structure
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 Back     alignment and structure
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Back     alignment and structure
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Back     alignment and structure
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Back     alignment and structure
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Back     alignment and structure
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Back     alignment and structure
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Back     alignment and structure
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* Back     alignment and structure
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1js3a_476 DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] 99.12
d1pmma_450 Glutamate decarboxylase beta, GadB {Escherichia co 96.33
d1v72a1345 Phenylserine aldolase PSALD {Pseudomonas putida [T 93.57
d1elua_381 Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 88.89
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.12  E-value=9.4e-11  Score=110.70  Aligned_cols=101  Identities=12%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceec
Q psy13413         67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL  146 (276)
Q Consensus        67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFss  146 (276)
                      +-.-.+++..++++++|.+.+++.|+|+++.++.+ +++||||.|.              |.+|.+|+++|++++.+|.+
T Consensus       372 ~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l-~iV~Fr~~~~--------------d~~n~~l~~~l~~~G~~~~s  436 (476)
T d1js3a_         372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL-GLVCFRLKGS--------------DGLNEALLERINSARKIHLV  436 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS-SEEEEEESSC--------------HHHHHHHHHHHHHHTSCBCE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce-EEEEEEccCC--------------hHHHHHHHHHHHhcCCEEEe
Confidence            34446778899999999999999999999999999 9999999774              46899999999999999999


Q ss_pred             ccccCCceeEEEEec---CCcccHHHHHHHHHHHhHhHH
Q psy13413        147 GEGTDGLACVRFGMV---TAETDITELLSLVEETGQQEE  182 (276)
Q Consensus       147 G~~~~G~~CVRfGMv---T~d~DV~ELVd~I~~~GrEIE  182 (276)
                      .+..+|+.+||+.+.   |++.||+.+++.|.++|+||-
T Consensus       437 ~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         437 PCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             EEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999987   888899999999999999873
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure