Psyllid ID: psy1343

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSPTAMSEG
cccccHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEEccccccccHHHHHcEEcccccccEEcccccccccccccccccccccHHHccccccccHHHHcccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccEEEEcccccccccccccccHHHHcccHHHHHHHcccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEEEccEEEEcccccccccccEEEEEEEEccccccccccc
cccccHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHccccHcccccccHHccEEEEEEccccEEEEEEEEEcccccEEEcccEEEEccccccccHHHccccccccccccccccccccccccEEEEEEEEEccccccccEEEEEEEcccccEEEEEcccEEccccHHHcccccEEEEEEEccccccccccccc
alchvtplRDYFLREINYarvkrppgdssFLLVQRFGELMRklwnprnfkshvsphEMLQAVVLWSRKQfqfteqsdpidFLSWFLNTLHRALngtkkkdssIVYKTFLGsmkvktrkippvelEEKVRQRLLLTEEyketetespflyltcdlpppplfkdevleniipqvNLYTILTKFNNESEKEYKTYKENFLKrfeitslppyLILYVKRFtkntffveknptivnfpvknvdfgdiltpEVKAKYESTMYDLVKAKYESTMYDLVANIVhdgepsngtyrVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYElrttpsptamseg
alchvtplrdYFLREINyarvkrppgdsSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAlngtkkkdssivyktflgsmkvktrkippveleekVRQRLLLTeeyketetespflYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFfveknptivnfpvknvdfgDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELrttpsptamseg
ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRlllteeyketeteSPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSPTAMSEG
**CHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR***********
ALCHVTPLRDYFLREINY************LLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQ*TEQSDPIDFLSWFLNTLHRA*******************MKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVK**************YESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIY**************
ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP********
ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEV******TMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVExxxxxxxxxxxxxxxxxxxxxSPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSPTAMSEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q5R761565 U4/U6.U5 tri-snRNP-associ yes N/A 0.931 0.555 0.647 1e-117
Q3TIX9564 U4/U6.U5 tri-snRNP-associ yes N/A 0.931 0.556 0.644 1e-117
Q53GS9565 U4/U6.U5 tri-snRNP-associ yes N/A 0.931 0.555 0.644 1e-117
Q9USR2502 Probable mRNA-splicing pr yes N/A 0.881 0.591 0.409 1e-60
P43589448 Pre-mRNA-splicing factor yes N/A 0.780 0.587 0.266 1e-17
O75604605 Ubiquitin carboxyl-termin no N/A 0.916 0.510 0.243 1e-13
Q91W36520 Ubiquitin carboxyl-termin no N/A 0.824 0.534 0.263 2e-12
Q9Y6I4520 Ubiquitin carboxyl-termin no N/A 0.824 0.534 0.263 4e-12
O88623613 Ubiquitin carboxyl-termin no N/A 0.916 0.504 0.234 6e-12
Q5U349618 Ubiquitin carboxyl-termin no N/A 0.863 0.470 0.231 2e-11
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1 Back     alignment and function desciption
 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/326 (64%), Positives = 253/326 (77%), Gaps = 12/326 (3%)

Query: 1   ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
           AL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRKLWNPRNFK+HVSPHEMLQ
Sbjct: 242 ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ 301

Query: 61  AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
           AVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +IV   F GSM++ T+K+P
Sbjct: 302 AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361

Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
             +L  + +++LL  +EY+ET  ES F+YLT DLP  PL+KDE  + IIPQV L+ IL K
Sbjct: 362 HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK 421

Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
           FN  +EKEYKTYKENFLKRF++T LPPYLI  +KRFTKN FFVEKNPTIVNFP+ NVD  
Sbjct: 422 FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR 481

Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
           + L+ E            V+A +E+T YDL+ANIVHDG+PS G+YR+H+ H G GKWYE+
Sbjct: 482 EYLSEE------------VQAVHENTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYEL 529

Query: 301 QDLHVTDILPQMITLTEAYIQIYELR 326
           QDL VTDILPQMITL+EAYIQI++ R
Sbjct: 530 QDLQVTDILPQMITLSEAYIQIWKRR 555
May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).
Pongo abelii (taxid: 9601)
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2 Back     alignment and function description
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2 Back     alignment and function description
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1 Back     alignment and function description
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1 Back     alignment and function description
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2 Back     alignment and function description
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2 Back     alignment and function description
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2 Back     alignment and function description
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus GN=Usp2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
328703901 461 PREDICTED: u4/U6.U5 tri-snRNP-associated 0.934 0.683 0.807 1e-153
307214210 509 U4/U6.U5 tri-snRNP-associated protein 2 0.955 0.632 0.783 1e-153
307184634 504 U4/U6.U5 tri-snRNP-associated protein 2 0.931 0.623 0.797 1e-152
242017490 482 U4/U6.U5 tri-snRNP-associated protein, p 0.928 0.649 0.8 1e-152
332028251 507 U4/U6.U5 tri-snRNP-associated protein 2 0.931 0.619 0.797 1e-152
322783229 539 hypothetical protein SINV_09876 [Solenop 0.955 0.597 0.774 1e-152
350415794 508 PREDICTED: LOW QUALITY PROTEIN: U4/U6.U5 0.931 0.618 0.794 1e-151
340713360 502 PREDICTED: u4/U6.U5 tri-snRNP-associated 0.931 0.625 0.794 1e-151
345489070 496 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.931 0.633 0.797 1e-151
380021530 508 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.931 0.618 0.797 1e-151
>gi|328703901|ref|XP_001946816.2| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/327 (80%), Positives = 291/327 (88%), Gaps = 12/327 (3%)

Query: 1   ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
           AL +VTPLRDYFL E NYA+VKRPPGDS FLLVQRFGELMRKLWNPRNFK+HVSPHEMLQ
Sbjct: 145 ALSNVTPLRDYFLDERNYAKVKRPPGDSVFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ 204

Query: 61  AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
           AVVLWS K+FQFTEQ DPIDFLSWFLN+LHRALNG K + SSIVYKTF+GSM+VKTRKIP
Sbjct: 205 AVVLWSGKKFQFTEQGDPIDFLSWFLNSLHRALNGKKSRHSSIVYKTFMGSMRVKTRKIP 264

Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
           PVEL+EK R  LL T+EY E  +ESPFLYLTCDLPPPPLFKDEV+ENIIPQV+LY++LTK
Sbjct: 265 PVELDEKQRYSLLCTDEYAEHVSESPFLYLTCDLPPPPLFKDEVMENIIPQVSLYSLLTK 324

Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
           FNNESEKEYKTYKENF+KRFEIT LPPYLILY+KRFTKNTFFVEKNPTIVNFPVKNVDFG
Sbjct: 325 FNNESEKEYKTYKENFMKRFEITQLPPYLILYIKRFTKNTFFVEKNPTIVNFPVKNVDFG 384

Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
           DILTPE            VKA +++T YDL+ANIVHDGEP+ GTYRVH+  +G  KWYE+
Sbjct: 385 DILTPE------------VKAAHKNTSYDLIANIVHDGEPNKGTYRVHVLKQGNSKWYEM 432

Query: 301 QDLHVTDILPQMITLTEAYIQIYELRT 327
           QDLHV+DILPQMITLTEAYIQIY+LRT
Sbjct: 433 QDLHVSDILPQMITLTEAYIQIYKLRT 459

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307214210|gb|EFN89316.1| U4/U6.U5 tri-snRNP-associated protein 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307184634|gb|EFN70965.1| U4/U6.U5 tri-snRNP-associated protein 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242017490|ref|XP_002429221.1| U4/U6.U5 tri-snRNP-associated protein, putative [Pediculus humanus corporis] gi|212514110|gb|EEB16483.1| U4/U6.U5 tri-snRNP-associated protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332028251|gb|EGI68298.1| U4/U6.U5 tri-snRNP-associated protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322783229|gb|EFZ10815.1| hypothetical protein SINV_09876 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|350415794|ref|XP_003490754.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340713360|ref|XP_003395212.1| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345489070|ref|XP_001603642.2| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380021530|ref|XP_003694616.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
FB|FBgn0030969494 CG7288 [Drosophila melanogaste 0.928 0.633 0.685 3.7e-119
UNIPROTKB|A6QQX8565 USP39 "Uncharacterized protein 0.931 0.555 0.622 4e-106
UNIPROTKB|E2QZF6561 USP39 "Uncharacterized protein 0.931 0.559 0.622 4e-106
UNIPROTKB|Q53GS9565 USP39 "U4/U6.U5 tri-snRNP-asso 0.931 0.555 0.622 4e-106
MGI|MGI:107622564 Usp39 "ubiquitin specific pept 0.931 0.556 0.622 4e-106
RGD|1308103564 Usp39 "ubiquitin specific pept 0.931 0.556 0.622 4e-106
ZFIN|ZDB-GENE-030131-966497 usp39 "ubiquitin specific pept 0.922 0.625 0.623 6.7e-104
UNIPROTKB|B8ZZD1502 USP39 "U4/U6.U5 tri-snRNP-asso 0.409 0.274 0.626 4.8e-93
UNIPROTKB|B9A018536 USP39 "U4/U6.U5 tri-snRNP-asso 0.827 0.520 0.604 7.3e-91
WB|WBGene00017280602 usp-39 [Caenorhabditis elegans 0.961 0.538 0.526 9.6e-89
FB|FBgn0030969 CG7288 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 222/324 (68%), Positives = 256/324 (79%)

Query:     1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
             AL HV PLRDYFL++ +YA V RPPGDS F LVQRFGELMRK+WNPRNFKSHVSPHEMLQ
Sbjct:   176 ALSHVGPLRDYFLQKQSYAHVVRPPGDSVFTLVQRFGELMRKMWNPRNFKSHVSPHEMLQ 235

Query:    61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
             AVVLWS K+FQ TEQ DPIDFLSWFLNTLHRAL G K  +SSI+YK FLG MK+ TRK+P
Sbjct:   236 AVVLWSSKRFQITEQGDPIDFLSWFLNTLHRALKGNKHPNSSILYKIFLGEMKIYTRKMP 295

Query:   121 PVELEEKVRQRXXXXXXXXXXXXXSPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
             PVEL++  + +               F+YLTCDLPPPPLF DE  ENIIPQVNLY +L+K
Sbjct:   296 PVELDDAAKAQLLATEEYKDQVEDKNFIYLTCDLPPPPLFTDEFRENIIPQVNLYQLLSK 355

Query:   181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
             FN  +EKEYKTYK NF+KRFEIT LP ++ILY+KRFTKNTFF+EKNPTIVNFP+K+VDFG
Sbjct:   356 FNGTAEKEYKTYKANFMKRFEITRLPQFIILYIKRFTKNTFFLEKNPTIVNFPIKHVDFG 415

Query:   241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
             DIL    + K      D+     + T Y+LVANIVHDG+P  GTYR H+ HK  G+WYE+
Sbjct:   416 DILGMRQRDK------DV-----KDTKYNLVANIVHDGDPKKGTYRAHILHKANGQWYEM 464

Query:   301 QDLHVTDILPQMITLTEAYIQIYE 324
             QDLHVT+ILPQMITLTE+YIQIYE
Sbjct:   465 QDLHVTEILPQMITLTESYIQIYE 488
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC
GO:0071011 "precatalytic spliceosome" evidence=IDA
UNIPROTKB|A6QQX8 USP39 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZF6 USP39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS9 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107622 Usp39 "ubiquitin specific peptidase 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308103 Usp39 "ubiquitin specific peptidase 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-966 usp39 "ubiquitin specific peptidase 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZD1 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B9A018 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00017280 usp-39 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q53GS9SNUT2_HUMANNo assigned EC number0.64410.93170.5557yesN/A
Q5R761SNUT2_PONABNo assigned EC number0.64720.93170.5557yesN/A
Q3TIX9SNUT2_MOUSENo assigned EC number0.64410.93170.5567yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 1e-144
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-38
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 7e-38
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-19
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 4e-11
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 2e-10
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-09
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 4e-07
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 4e-06
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 5e-06
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-04
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 4e-04
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 0.001
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 0.003
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  414 bits (1066), Expect = e-144
 Identities = 165/325 (50%), Positives = 218/325 (67%), Gaps = 22/325 (6%)

Query: 1   ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
           AL HV P+R++FL   NY  +K         LV+R  EL+RK+WNPRNFK HVSPHE+LQ
Sbjct: 137 ALSHVKPIRNFFLLYENYENIKDRKS----ELVKRLSELIRKIWNPRNFKGHVSPHELLQ 192

Query: 61  AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
           AV   S+K+F  TEQSDP++FLSW LNTLH+ L G+KK +SSI++  F G ++++T+KI 
Sbjct: 193 AVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIK 252

Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
           P   EE  +      +   +  + SPFL LT DLPPPPLFKD   ENIIPQV L  +L K
Sbjct: 253 PHAEEEGSKD-KFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK 311

Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
           ++ ++E E K      LKR+ I+ LP YLI ++KRF+KN FF EKNPTIVNFP+KN+D  
Sbjct: 312 YDGKTETELKDS----LKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLS 367

Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPS-NGTYRVHLYHKGIGKWYE 299
           D +  +              +   ST Y+LVANIVH+G P  +GT+RV L HK   KW+E
Sbjct: 368 DYVHFD------------KPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFE 415

Query: 300 IQDLHVTDILPQMITLTEAYIQIYE 324
           IQDL+V ++LPQ+I L+E+YIQI+E
Sbjct: 416 IQDLNVKEVLPQLIFLSESYIQIWE 440

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG1865|consensus 545 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG1868|consensus653 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG0944|consensus763 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1867|consensus492 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG2026|consensus442 100.0
KOG1870|consensus842 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1866|consensus 944 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1873|consensus877 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
KOG4598|consensus 1203 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.98
KOG1864|consensus587 99.97
KOG1863|consensus 1093 99.96
KOG1872|consensus473 99.92
KOG1871|consensus420 99.91
KOG1275|consensus 1118 99.74
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 97.94
KOG1887|consensus806 96.36
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 91.24
PF08715320 Viral_protease: Papain like viral protease; InterP 90.15
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=2.7e-59  Score=445.45  Aligned_cols=302  Identities=54%  Similarity=0.914  Sum_probs=257.1

Q ss_pred             CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343           1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID   80 (337)
Q Consensus         1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E   80 (337)
                      ||+|+|+||+|||........    .....+++++|+.+++++|+++.++..++|.+|+++++...++.|.++.||||||
T Consensus       137 ~L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~E  212 (440)
T cd02669         137 ALSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVE  212 (440)
T ss_pred             HHHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHH
Confidence            689999999999987644221    1223589999999999999988777899999999999877667899999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCc-eeeeeecceeeeccCCCCCC
Q psy1343          81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYK-ETETESPFLYLTCDLPPPPL  159 (337)
Q Consensus        81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-~s~~~e~f~~lsl~ip~~~~  159 (337)
                      ||.+|||.||++++...+...++|.++|+|++++.++|+.+....+..  ...|..|+. .+.+.+||++|+|+||..+.
T Consensus       213 Fl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~--~~~~~~c~~~~s~~~~pF~~LsLdip~~~~  290 (440)
T cd02669         213 FLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGS--KDKFFKDSRVKKTSVSPFLLLTLDLPPPPL  290 (440)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeeccccccccc--ccccccccccceeeeccceEEEecCCCCcc
Confidence            999999999999987666678999999999999988877664332221  224667774 67888999999999999888


Q ss_pred             ccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCC
Q psy1343         160 FKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDF  239 (337)
Q Consensus       160 ~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl  239 (337)
                      +.+....+.++.++|++||++|.+++|..+    ..++|+..|.++|+||+||||||.++.+..+|+++.|+||++.|||
T Consensus       291 ~~~~~~~~~l~~~~l~e~L~ky~~~~c~~~----~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm  366 (440)
T cd02669         291 FKDGNEENIIPQVPLKQLLKKYDGKTETEL----KDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDL  366 (440)
T ss_pred             ccccccccccCcccHHHHHHhcCCccceec----ccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccch
Confidence            777777777889999999999987776553    5679999999999999999999998877778999999999656899


Q ss_pred             CCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCC-CCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCc
Q psy1343         240 GDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEA  318 (337)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~-~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~a  318 (337)
                      ++|+..+.....            ....|+|+|||+|.|+. ++|||+||+|+..+|+||+|||+.|+++++++|...+|
T Consensus       367 ~~y~~~~~~~~~------------~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~ea  434 (440)
T cd02669         367 SDYVHFDKPSLN------------LSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSES  434 (440)
T ss_pred             hhhhCccccccC------------CCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCc
Confidence            999975332222            67899999999999997 99999999998668999999999999999999999999


Q ss_pred             EEEEEE
Q psy1343         319 YIQIYE  324 (337)
Q Consensus       319 YiLfY~  324 (337)
                      |||||+
T Consensus       435 Yll~Y~  440 (440)
T cd02669         435 YIQIWE  440 (440)
T ss_pred             eEEEeC
Confidence            999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG1865|consensus Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868|consensus Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1867|consensus Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2026|consensus Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866|consensus Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598|consensus Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>KOG1872|consensus Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information
>KOG1275|consensus Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1887|consensus Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 2e-20
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-13
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 5e-13
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 5e-13
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 5e-13
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-08
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 6e-07
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 3e-05
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 3e-05
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 3e-05
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 148/354 (41%), Gaps = 49/354 (13%)
Query: 1   ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
            L +  PL DYFL++   A + R  P      + + + EL++++W+ R+  +HV+P  M 
Sbjct: 26  CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAP-RMF 82
Query: 60  QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKD-----------SSIVYKTF 108
           +  V     QF   +Q D  + L++ L+ LH  LN  KKK             ++V K  
Sbjct: 83  KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEA 142
Query: 109 LGSMKVKTRKIPPVELEEKVRQRXXXXXXXXXXXXXSPFLYLTCDLPPPPLFKDEVLEN- 167
             + +++   +         +                PF YLT    P PL KD V+E  
Sbjct: 143 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRVMEGP 199
Query: 168 -IIPQ------------VNLYTILTKFNNESEKEYKTYK--ENFLKRFEITSLPPYLILY 212
            + PQ            + L+T +              K  +   K+F++ SLP  L+++
Sbjct: 200 MLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVH 259
Query: 213 VKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVA 272
           +KRF+ N ++ +K  T+V FP++ ++  + +       Y               +YDL+A
Sbjct: 260 LKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPY---------------VYDLIA 304
Query: 273 NIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR 326
              H G    G Y  +  +K  GKWY   D +V+      I    AY+  Y+ R
Sbjct: 305 VSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 2e-35
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-33
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-33
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 5e-33
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 3e-30
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 5e-25
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 4e-22
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 6e-16
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 7e-16
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  130 bits (329), Expect = 2e-35
 Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 76/363 (20%)

Query: 1   ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
            L +   LRDY L+   Y R      ++   LV+ F +L++ +W   +    VSP E   
Sbjct: 27  CLSNTRELRDYCLQR-LYMRDLHHGSNAHTALVEEFAKLIQTIWT-SSPNDVVSPSEFKT 84

Query: 61  AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
            +  ++  +F    Q D  +FL + L+ LH  +N    +  S            +     
Sbjct: 85  QIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKS----------NPENLDHL 133

Query: 121 PVELEEKVRQRLLLTEEY---------------------KETETESPFLYLTCDLPPPPL 159
           P + + +   R  L  E                        +    PF  L+  +     
Sbjct: 134 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY 193

Query: 160 ------------FKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPP 207
                        K++VL+             K      +     ++  +K+F I   P 
Sbjct: 194 PEVTLMDCMRLFTKEDVLDGD----------EKPTCCRCRG----RKRCIKKFSIQRFPK 239

Query: 208 YLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTM 267
            L+L++KRF+++     K  T VNFP++++D  +  +                      +
Sbjct: 240 ILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTN----------------HAV 283

Query: 268 YDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327
           Y+L A   H G    G Y  +    G G+W+   D  VT +    +  ++AY+  YEL +
Sbjct: 284 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 343

Query: 328 TPS 330
            PS
Sbjct: 344 PPS 346
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.81
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.1e-61  Score=451.68  Aligned_cols=298  Identities=29%  Similarity=0.448  Sum_probs=246.5

Q ss_pred             CCCCChHHHHHhhccccccccCC-CCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343           1 ALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI   79 (337)
Q Consensus         1 ~L~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~   79 (337)
                      ||+|+|+||+||+...+....+. .+....++++++|++|+..||+++  ...++|..|+.+++.. .+.|.++.|||||
T Consensus        26 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~~l~~~-~~~f~~~~QqDA~  102 (367)
T 2y6e_A           26 CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRMFKTQVGRF-APQFSGYQQQDSQ  102 (367)
T ss_dssp             HHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHHHHHHHHHH-CGGGCSSSCCCHH
T ss_pred             HHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHHHHHHHHHHh-hhhcCCCCCCCHH
Confidence            68999999999998766544322 233345789999999999999987  6789999999999876 7999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCC---------------------------CCCcceeccCCeEeeeeecCCCcchhHhhhhhc
Q psy1343          80 DFLSWFLNTLHRALNGTKKK---------------------------DSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRL  132 (337)
Q Consensus        80 Efl~~ll~~l~~~~~~~~~~---------------------------~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~  132 (337)
                      |||.+|||.||++++...+.                           ..++|.++|+|+++                +++
T Consensus       103 Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~----------------s~~  166 (367)
T 2y6e_A          103 ELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK----------------STL  166 (367)
T ss_dssp             HHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE----------------EEE
T ss_pred             HHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe----------------eeE
Confidence            99999999999998764321                           34678999999999                667


Q ss_pred             cccccCceeeeeecceeeeccCCCCCCccccc-----cccCCCcccHHHHHhhhccc---------chhhhcccccceeE
Q psy1343         133 LLTEEYKETETESPFLYLTCDLPPPPLFKDEV-----LENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLK  198 (337)
Q Consensus       133 ~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~-----~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k  198 (337)
                      +|..|++.+.+.|+|++|+|+||.........     .....+.++|++||+.|+..         .|+.|+.. +.+.|
T Consensus       167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~-~~a~K  245 (367)
T 2y6e_A          167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH-QQATK  245 (367)
T ss_dssp             ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE-ECCEE
T ss_pred             EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC-ceEEE
Confidence            89999999999999999999999753211000     00112357999999999865         38888877 88999


Q ss_pred             EEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeec
Q psy1343         199 RFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDG  278 (337)
Q Consensus       199 ~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G  278 (337)
                      +..|.++|+||+|||+||.++.+...|++..|.||++.|||++|+.....               ....|+|+|||+|.|
T Consensus       246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~---------------~~~~Y~L~avv~H~G  310 (367)
T 2y6e_A          246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA---------------RPYVYDLIAVSNHYG  310 (367)
T ss_dssp             EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS---------------CCCEEEEEEEEEEEC
T ss_pred             EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC---------------CCceEEEEEEeecCC
Confidence            99999999999999999999887788999999999657999999876432               467999999999999


Q ss_pred             CCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCCCCCC
Q psy1343         279 EPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSPTA  333 (337)
Q Consensus       279 ~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~~  333 (337)
                      ++++|||+||+|+..+++||+|||+.|+++++++|....||||||+|++.....+
T Consensus       311 ~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~~  365 (367)
T 2y6e_A          311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYKT  365 (367)
T ss_dssp             SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-----
T ss_pred             CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCCC
Confidence            9999999999999767999999999999999999999999999999988655443
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-33
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 3e-33
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-18
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-11
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-10
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 2e-33
 Identities = 69/336 (20%), Positives = 128/336 (38%), Gaps = 34/336 (10%)

Query: 1   ALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
            LC+   L DYF R      + R         + + FG +M+ LW  +    ++SP +  
Sbjct: 33  CLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDF- 89

Query: 60  QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
           +  +     QF    Q D  + L + ++ LH  LN    +           D     +  
Sbjct: 90  KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHA 149

Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENI 168
               K     I     + + +  +     +K++ T   F+YL+  L        +    +
Sbjct: 150 WQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRL 209

Query: 169 IPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPT 228
             +    T   +F     +  +    + LK+ EI  LPP L++++KRF+ +  + +K  T
Sbjct: 210 FSKEEKLTDNNRFYCSHCRARR----DSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQT 265

Query: 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVH 288
            V+FP++N+D                   ++  K     Y+L +   H G    G Y  +
Sbjct: 266 SVDFPLENLDL---------------SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAY 310

Query: 289 LYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
             +    +W++  D  V+DI    +  + AYI  Y 
Sbjct: 311 CKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYT 346
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-51  Score=376.90  Aligned_cols=267  Identities=19%  Similarity=0.257  Sum_probs=224.2

Q ss_pred             CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343           1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID   80 (337)
Q Consensus         1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E   80 (337)
                      ||+++|+||++++......      .....++.++|+++|..|+.+.   .++.|..++..+.   .+.|..+.||||+|
T Consensus        24 ~L~~~~~f~~~i~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~~---~~~~~~~~qqDa~E   91 (347)
T d1nbfa_          24 TLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---WETLDSFMQHDVQE   91 (347)
T ss_dssp             HHHTSHHHHHHHHTSCCTT------CCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHTT---CCGGGGGSCBCHHH
T ss_pred             HHHcCHHHHHHHHhCCccC------CcccchHHHHHHHHHHHHhcCC---CCcChHHHHHhhc---hhhcchHHHHHHHH
Confidence            5899999999998755332      1223579999999999999875   4789999988773   46789999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343          81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF  160 (337)
Q Consensus        81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~  160 (337)
                      |+..||+.|++++....  ..+++.++|+|.+.                +.+.|..|+..+.+.|+|+.|+|++|...  
T Consensus        92 f~~~ll~~l~~~~~~~~--~~~~i~~lF~g~~~----------------~~~~C~~C~~~s~~~e~f~~l~L~i~~~~--  151 (347)
T d1nbfa_          92 LCRVLLDNVENKMKGTC--VEGTIPKLFRGKMV----------------SYIQCKEVDYRSDRREDYYDIQLSIKGKK--  151 (347)
T ss_dssp             HHHHHHHHHHHHHTTST--TTTHHHHHHCEEEE----------------EEEEESSSCCEEEEEEEESSEEEECTTCC--
T ss_pred             HHHHHHHHHHHHHhhcc--ccccccceeceEEE----------------EeEEeCCccceeeeecccccccccccccc--
Confidence            99999999999986543  45679999999999                66789999999999999999999998764  


Q ss_pred             cccccccCCCcccHHHHHhhhcccc--------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCCceE
Q psy1343         161 KDEVLENIIPQVNLYTILTKFNNES--------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNPTIV  230 (337)
Q Consensus       161 ~~~~~~~~~~~~sl~~~L~~~~~~~--------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~~~v  230 (337)
                                  ++.++|..++..+        |..|+.. ..+.++..|.++|++|+|||+||.+..  ....|++..|
T Consensus       152 ------------~~~~~l~~~~~~e~l~~~~~~~~~~~~~-~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v  218 (347)
T d1nbfa_         152 ------------NIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF  218 (347)
T ss_dssp             ------------BHHHHHHHHTCCEEECGGGCEECSTTCE-ECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCC
T ss_pred             ------------chhhhHHhhcchheeccccccccccCcc-eeccEEEEEEecCChheEeeeeeeeccccCcccccCceE
Confidence                        7889999887654        2223333 778899999999999999999998643  4667999999


Q ss_pred             eeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCc
Q psy1343         231 NFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILP  310 (337)
Q Consensus       231 ~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~  310 (337)
                      .|| +.|||++|+......              ....|+|+|||+|.|++++|||+||+|+..+++||+|||+.|+++++
T Consensus       219 ~fp-~~Ldl~~~~~~~~~~--------------~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~  283 (347)
T d1nbfa_         219 EFP-EQLPLDEFLQKTDPK--------------DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTK  283 (347)
T ss_dssp             BCC-SEEECGGGBSSCCTT--------------SCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECCH
T ss_pred             eee-eeecccccccccccc--------------CccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECCH
Confidence            999 689999998765422              46789999999999998999999999987678999999999999999


Q ss_pred             ccccc---------------CCcEEEEEEecC
Q psy1343         311 QMITL---------------TEAYIQIYELRT  327 (337)
Q Consensus       311 ~~v~~---------------~~aYiLfY~r~~  327 (337)
                      ++|..               .+||||||+|++
T Consensus       284 ~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~  315 (347)
T d1nbfa_         284 EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES  315 (347)
T ss_dssp             HHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGG
T ss_pred             HHHHHhhcCCCccccccCCCCCEEEEEEEecC
Confidence            99873               369999999986
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure