Psyllid ID: psy13451

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
Protein Sequence
MHGRKKESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccEEcccccccccccHHHcccccHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEccccHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHEEEcccccEEEEEEEEEEcccccEEEcccccEEEEEcccccccccEEHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHccEEccccccccEcccHHHHEEEEEEccccccccEEEHHHHcccccccEEEcccccccEEEcccccccccEEEcccccccHHHHHHHHHEccccccHHHcccHHccccccEEEcccccccccccHHHccHHcccEEEEccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mhgrkkesVSVQEAKKRSAKVKWYHNLMETIFEKrknqeyddEALSLTSEVLrnipdinslWNYRKEVLLHMKATLAEEELHELVDRELKLTKdcllaqpksygtwfqrcyvldhisrapnyeKELELCNYYLEldernfhcwdyrryvtdrhkvaplkelnystekiEANFSNYSAWHYRSkllpllypdpnnhlpieqdkYVNEFSMVesavftepkdqsaWFYQRWLlgertspvqiisagvlpsgvtfvTFNQLvdltstsqikvdsNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLqhlhpgssdsneIILKRFDLlktldplrlnyykdseskyKIETFIQtnpranqitnlsslqltsIHHMHCfahckqvdlsnnpltnnclrhltplvaceslklthcslsslhvfphlpslesldvshnapnIILCVYFQSlklthcslsslhvfphlpslesldvshnaiDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Flexible Loop (DISEMBL)
mhgrkkesvsvqeakkrsakvkwyHNLMETIfekrknqeYDDEALSLTSevlrnipdinsLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLaqpksygtwfqRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTdrhkvaplkelnystekIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLtstsqikvdsNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLnyykdseskYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTgnpvsadmvvkhctlvv
Low Complexity Region (SEG)
MHGRKKESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Disordered region (IsUnstruct)
********************VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLV*
Disordered Region (DISOPRED)
*HGRKKE***************WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP******PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Disordered Region (DISEMBL)
******************AKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Disordered Region (DISPRO)
*****KESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGRKKESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	522	2.2.26 [Sep-21-2011]
Q92696	567	Geranylgeranyl transferas	yes	N/A	0.911	0.839	0.321	4e-63
Q5NVK5	567	Geranylgeranyl transferas	yes	N/A	0.911	0.839	0.323	4e-63
A5A779	567	Geranylgeranyl transferas	yes	N/A	0.446	0.410	0.477	1e-60
Q5EA80	567	Geranylgeranyl transferas	yes	N/A	0.909	0.837	0.328	2e-59
Q08602	567	Geranylgeranyl transferas	yes	N/A	0.547	0.504	0.419	1e-56
Q9JHK4	567	Geranylgeranyl transferas	yes	N/A	0.454	0.417	0.465	2e-56
Q55DQ4	311	Geranylgeranyl transferas	yes	N/A	0.434	0.729	0.382	8e-41
O94412	344	Geranylgeranyl transferas	yes	N/A	0.442	0.671	0.363	2e-32
O93829	371	Geranylgeranyl transferas	N/A	N/A	0.442	0.622	0.334	9e-29
Q00618	327	Geranylgeranyl transferas	yes	N/A	0.429	0.685	0.341	4e-28

>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2

 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 279/578 (48%), Gaps = 102/578 (17%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKV------DSNVLMSWTSLNGASR- 285
            R  P   +    +      +T +    L   S++++      DS +++ W + +G +R 
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRP 296

Query: 286 ----------------------SFIWVRFLLSLSCP-------------------YRNYI 304
                                   IW    +   C                    +R  +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCEL 356

Query: 305 SV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
           SV       + L S   LQ L P   ++   +L    L++ LDPL    Y+    +Y  +
Sbjct: 357 SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPL---LYEKETLQY-FQ 409

Query: 358 TFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACE 414
           T    +P RA  + +L S  L   S+  M  +A  + + L++  LT  C  HL  L+   
Sbjct: 410 TLKAVDPMRATYLDDLRSKFLLENSVLKME-YAEVRVLHLAHKDLTVLC--HLEQLLLVT 466

Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
            L L+H  L +L   P L +L  L+V   + N I                SL    +LP 
Sbjct: 467 HLDLSHNRLRTLP--PALAALRCLEVLQASDNAI---------------ESLDGVTNLPR 509

Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
           L+ L + +N +   + +V     +C +++   L GNP+
Sbjct: 510 LQELLLCNNRLQ--QPAVLQPLASCPRLVLLNLQGNPL 545

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0

>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii GN=RABGGTA PE=2 SV=1

 Score =  242 bits (618), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 187/578 (32%), Positives = 281/578 (48%), Gaps = 102/578 (17%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
            R  P   +    +        V+F++ + + S ++I +    DS +++ W + +G +R 
Sbjct: 238 -RADPQDALRCLHVSREEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRP 296

Query: 286 ----------------------SFIWVRFLLSLSCP-------------------YRNYI 304
                                   IW    +   C                    +R  +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCEL 356

Query: 305 SV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
           SV       + L S   LQ L P   ++   +L    L++ LDPL    Y+    +Y  +
Sbjct: 357 SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPL---LYEKETLRY-FQ 409

Query: 358 TFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACE 414
           T    +P RA  + +L S  L   S+  M  +A  + + L++  LT  C  HL  L+   
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKME-YAEVRVLHLAHKDLTVLC--HLEQLLLVT 466

Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
            L L+H  L +L   P L +L  L+V   + N I                SL    +LP 
Sbjct: 467 HLDLSHNRLRTLP--PALAALRCLEVLQASDNAI---------------ESLDGVTNLPR 509

Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
           L+ L + +N +     +V     +C +++   L GNP+
Sbjct: 510 LQELLLCNNRLQR--PAVLQPLASCPRLVLLNLQGNPL 545

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 156/245 (63%), Gaps = 12/245 (4%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y    +T+F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQTATQTVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSP 237
            R  P
Sbjct: 238 -RADP 241

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus GN=RABGGTA PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 278/579 (48%), Gaps = 104/579 (17%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y    +T+F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQ----------------------IISAGV-----------------LPSGVTFV 253
            R  P                        ++ +G+                  P G    
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDESPLAVEWRTPEGRNRP 296

Query: 254 TFNQLVDLTSTS---QIKVDSNVLMSWTSLNG-------ASRSFIWVRFLLSLSCPYRNY 303
           +   L DL +TS   Q+   +  ++ WT+ +          R   W R   +    +R  
Sbjct: 297 SHIWLCDLPATSLNDQLPQHTFRVI-WTAGDAQKECVLLKGRQEGWCRDSATDEQLFRCE 355

Query: 304 ISV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKI 356
           +SV       + L S   LQ L P   ++   +L    L++ LDPL+   Y+    +Y  
Sbjct: 356 LSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLQ---YEKETLQY-F 408

Query: 357 ETFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC 413
           +T    +P RA  + +L S  L   S+  M  +A  + + L +  LT  C  HL  L+  
Sbjct: 409 QTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YAEVRVLHLGHKDLTVLC--HLEQLLLV 465

Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLP 473
             L L+H  L +L   P L +L  L+V     N I                SL    +LP
Sbjct: 466 THLDLSHNRLRALP--PALAALRCLEVLQANDNAI---------------ESLDGVTNLP 508

Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
            L+ L + +N +   + +V     +C ++    L GNP+
Sbjct: 509 RLQELILCNNRLQ--QPAVLQPLTSCPRLTLLNLQGNPL 545

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus norvegicus GN=Rabggta PE=1 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 19/305 (6%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
            R  P  ++    +        V F++ + + S   T  + VD   L + W + +G +R 
Sbjct: 238 -RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 286 SFIWV 290
           S +W+
Sbjct: 297 SHVWL 301

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus GN=Rabggta PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/249 (46%), Positives = 158/249 (63%), Gaps = 12/249 (4%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLRELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQII 241
            R  P  ++
Sbjct: 238 -RAEPHDVL 245

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium discoideum GN=rabggta PE=3 SV=2

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 11/238 (4%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQ--EYDDEALSLTSEVLRN 54
           MHG  K   S ++AK    K   K++ Y+ L+++  E R+ Q   YD+ +LS++  VL  
Sbjct: 1   MHGVLKVRTSEEKAKAQRLKELEKIESYNKLVKSFEELREKQNGRYDEISLSVSKLVLIE 60

Query: 55  IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD 114
            P+  ++WNYR+  +L    T    EL  +   E+K  ++C+    KSY  WF R ++  
Sbjct: 61  NPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQRFTKSYWIWFHRQWIAL 120

Query: 115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174
            +    ++E+E++LC   L  D RNFHCW +RR++     +    EL Y+TEK+E NFSN
Sbjct: 121 RMDNC-DWEREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQNFSN 179

Query: 175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           YSAWH RS +LP +Y +P   L    +K + EF +V +AV+TEPKD S+W Y +WL+ 
Sbjct: 180 YSAWHQRSSILPKIYKEPEQLL----EKILEEFELVRNAVYTEPKDSSSWIYHKWLVA 233

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal-XCC or -XCXC, where both cysteines may become modified.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet4 PE=3 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 14/245 (5%)

Query: 1   MHGRKKESVSVQE----AKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHG  +  +S ++    A+K  AK++ Y  L+    E RK ++Y +  L LT+E+L   P
Sbjct: 1   MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60

Query: 57  DINSLWNYRKEVLLH-MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115
           +  S+WNYR+E+LL+ +   ++  E  +L+D ELK     +   PK Y  +  R + L++
Sbjct: 61  ETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLEN 120

Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----PLKELNYSTEKIEA 170
            +  PN+  E+ +    L  D RNFH W YRRYV  + + A       KE+ Y+T  I  
Sbjct: 121 -APYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIAT 179

Query: 171 NFSNYSAWHYRSKLLPL---LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ 227
           NFSN+SA H R+KL+     L  DPN+   + +     E  M+  AVFT+P D S W Y 
Sbjct: 180 NFSNFSALHNRTKLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYH 239

Query: 228 RWLLG 232
           RWL+G
Sbjct: 240 RWLMG 244

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal-XCC or -XCXC, where both cysteines may become modified.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1

 Score =  128 bits (322), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 41/272 (15%)

Query: 2   HGRKKESVSVQEAK-----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           HG K+  +S +EAK     K   K+K Y  L + IFE R N+ Y DEAL  T+E+L   P
Sbjct: 3   HGIKRVKLS-EEAKRLKLEKDQIKIKNYRQLTDEIFELRANENYSDEALIKTNELLIINP 61

Query: 57  DINSLWNYRKEVLL--HMKATLAEEELHE-LVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113
           +  ++WNYR+E+L+  +  +   +++++E +++++L      L   PK Y  W  R ++L
Sbjct: 62  EFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKFPKCYWIWNHRRWLL 121

Query: 114 DHISRAP--NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----------PLKE 160
             + +    N++ E  + +  L+LD+RNFH W YRR+V    ++             L E
Sbjct: 122 FELVKLGKVNWKYEFGVVSKLLDLDQRNFHGWHYRRFVVKNMELECKNDTTLILKINLDE 181

Query: 161 LNYSTEKIEANFSNYSAWHYRSKLLPLLY-----------PDPN--NHLP-IE--QDKYV 204
            NY+T KI+ +FSN+SAWH R+KL+P +Y            D      LP IE  Q+  +
Sbjct: 182 FNYTTLKIQKDFSNFSAWHNRTKLIPKIYNLIQQQQQQQQKDGKIFGDLPGIELFQNPIL 241

Query: 205 ---NEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
              N+  M+++ V+  P+D S W Y  WLL +
Sbjct: 242 LLKNDLEMIKTGVYMSPEDTSVWLYLYWLLTD 273

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1 SV=3

 Score =  126 bits (317), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 126/243 (51%), Gaps = 19/243 (7%)

Query: 1   MHGRKKESVSVQEAKKRSA----KVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHG K++  + +  +++      K+  Y +L E +   R  + Y  EAL  TSE+L   P
Sbjct: 1   MHGIKRKQWTKELLRQKRVQDEKKIYDYRSLTENVLNMRDEKIYSIEALKKTSELLEKNP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH- 115
           + N++WNYR++++    A+LA E      D+EL      L   PK Y  W  R +VL H 
Sbjct: 61  EFNAIWNYRRDII----ASLASELEIPFWDKELVFVMMLLKDYPKVYWIWNHRLWVLKHY 116

Query: 116 -ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR-----HKVAPLKELNYSTEKIE 169
             S    ++ EL + N  LE D RN+H W YRR V        +K    +E  Y+T KI 
Sbjct: 117 PTSSPKVWQTELAVVNKLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIKIN 176

Query: 170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVN-EFSMVESAVFTEPKDQSAWFYQR 228
            N SNYSAWH R +++  ++          Q +Y+  E S + +A+FT+ +DQS WFY +
Sbjct: 177 NNISNYSAWHQRVQIISRMFQKGEVG---NQKEYIRTEISYIINAMFTDAEDQSVWFYIK 233

Query: 229 WLL 231
           W +
Sbjct: 234 WFI 236

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	522
193705840	517	PREDICTED: geranylgeranyl transferase ty	0.810	0.818	0.367	7e-73
242024200	556	Geranylgeranyl transferase type-2 alpha	0.835	0.784	0.350	5e-70
405977843	571	Geranylgeranyl transferase type-2 subuni	0.896	0.819	0.320	4e-69
291222086	564	PREDICTED: Rab geranylgeranyltransferase	0.848	0.785	0.353	2e-66
391338990	491	PREDICTED: geranylgeranyl transferase ty	0.806	0.857	0.347	2e-66
260824986	566	hypothetical protein BRAFLDRAFT_276668 [	0.760	0.701	0.345	9e-66
147898455	565	Rab geranylgeranyltransferase alpha [Xen	0.913	0.844	0.332	4e-65
345492134	548	PREDICTED: LOW QUALITY PROTEIN: geranylg	0.875	0.833	0.349	5e-65
355778477	546	hypothetical protein EGM_16497 [Macaca f	0.831	0.794	0.341	2e-64
355693177	546	hypothetical protein EGK_18063 [Macaca m	0.831	0.794	0.339	1e-63

>gi|193705840|ref|XP_001943579.1| PREDICTED: geranylgeranyl transferase type-2 subunit alpha-like [Acyrthosiphon pisum]

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 181/493 (36%), Positives = 264/493 (53%), Gaps = 70/493 (14%)

Query: 1   MHGRKKESVSVQEAKKRSA------KVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRN 54
           MH R K  V   EA+K +A      K++ Y N +  +FE+R   EYD  AL  +  +LR+
Sbjct: 1   MHNRLK--VRTTEAQKAAADREKEKKLQLYRNTINDVFERRSRNEYDVLALKSSEGLLRS 58

Query: 55  IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD 114
            PDI ++WNYRKE+LLH+K +       E+++ EL LT+ CL   PKSY  W+ R ++LD
Sbjct: 59  NPDIVTIWNYRKEILLHLKPS------EEIINDELYLTEKCLQVNPKSYSAWYHRNWLLD 112

Query: 115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174
           ++  +P++ KEL+LC  YL++DERNFHCWDYR+ V  + +     EL ++ E IE+NFSN
Sbjct: 113 NVDPSPDWNKELQLCTKYLKIDERNFHCWDYRQIVASKCQEPNENELKFTMEMIESNFSN 172

Query: 175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
           YSAWHYRSKL      D       E+   ++E S+VESA FT+P DQSAW YQRWL+G+ 
Sbjct: 173 YSAWHYRSKLFSAAGKD-------EESTKISELSLVESAAFTDPSDQSAWIYQRWLIGKL 225

Query: 235 ------------TSPVQIISAGVLPSGVTFVTFNQL-------------VDLTSTSQIKV 269
                        + + +I    LP+    +   +              +D   +S+I++
Sbjct: 226 EPSKFIYKVSRIKNKIYLILNRKLPNNYKIIGLGETNWEQFDSKIWYKKLDNIDSSKIQI 285

Query: 270 --DSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNE 327
             + N ++   S++   ++     F L++S   R  ++   L S+  L  + P S  +  
Sbjct: 286 IDEVNQVIDNLSIDNVQQNI----FNLNISEQLRLVLN-GQLDSLHQLLDMEPESKWALL 340

Query: 328 II----------------LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQIT- 370
                             LK   LLK LD  R NYY D ES+Y+IE +I  N   N  + 
Sbjct: 341 TYVLLLYTLKPNNYFKNCLKNIKLLKELDSKRKNYYHDLESRYQIEHWIANNNNNNMDSV 400

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           NL    LT+ +HMH F   K +DLS+N L++  L HL  L+ CE L L +C L +L  FP
Sbjct: 401 NLKGYGLTAFYHMHMFLFNKNIDLSDNDLSHTNLNHLKNLIMCEQLSLKNCKLENLDNFP 460

Query: 431 HLPSLESLDVSHN 443
            L +LE LD+  N
Sbjct: 461 ALNNLEVLDLREN 473

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024200|ref|XP_002432517.1| Geranylgeranyl transferase type-2 alpha subunit, putative [Pediculus humanus corporis] gi|212517965|gb|EEB19779.1| Geranylgeranyl transferase type-2 alpha subunit, putative [Pediculus humanus corporis]

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 180/513 (35%), Positives = 259/513 (50%), Gaps = 77/513 (15%)

Query: 1   MHGRKK-------ESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLR 53
           MHGR K       + ++ QE +K++ + K    +M  I EKR  Q +D+E L+LT  +L 
Sbjct: 1   MHGRVKVRTTEEQKEIARQEKQKKAIEFK---KIMNQILEKRSLQIHDEEGLNLTGNLLT 57

Query: 54  NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113
             PDI +LWNYR+E+ L  K     E   +L++++L+LT+ CL   PKSYG+W  R ++L
Sbjct: 58  GNPDIITLWNYRREIFLSFKNDEDLESYQKLLEKDLQLTEQCLRVNPKSYGSWHHRIWIL 117

Query: 114 DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS 173
           D++ + P++ KEL LC  YL+LDERNFHCWDYRR V +R  V+ L E  ++ +KIE NFS
Sbjct: 118 DNLPK-PDWNKELNLCTKYLQLDERNFHCWDYRRIVAERSNVSHLSEYEFTMKKIETNFS 176

Query: 174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
           NYSAWH RSKLLP ++PD     PI ++K+  E  +VE+A FT+P DQSAWFY RWLLG 
Sbjct: 177 NYSAWHLRSKLLPKIFPDEKKKFPINEEKHNEELELVENAAFTDPNDQSAWFYLRWLLGL 236

Query: 234 RTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMS-------WTSLNGASRS 286
           +     II A          + +  +D       ++  N+ ++       W + N   +S
Sbjct: 237 KEPKTSIIYAKCSDEIYIITSKSLTMDSNENKNYEIKINIKINDVKLDGVWINGNLQPQS 296

Query: 287 FIWV--------------------------------RFLLSLSCPYRNYISVALLTSIT- 313
            +W+                                 F LS    + + +S  LL +IT 
Sbjct: 297 CLWIFKPHQQIQPADCISISLSDNNSVYETINVQPQGFYLS-KLNFHSVLSENLLETITK 355

Query: 314 ------LLQHLHPGSSDS-----------------NEIILKRFDLLKTLDPLRLNYYKDS 350
                  L  L P S  +                 NE I    D L  +D LR NYY D 
Sbjct: 356 QLDSCNQLIELEPDSKWTLLTSIFLMLTIDRLKYENE-IKNTIDKLTLIDSLRKNYYLDL 414

Query: 351 ESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPL 410
            SK  IE  +  N    ++ NLS   LT ++H        ++DLS N L ++ L++L  L
Sbjct: 415 RSKIIIELELLKNNEREKL-NLSRQNLTCLYHSQYLHGFVEIDLSYNSLKSDSLKYLYNL 473

Query: 411 VACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
           + C+ L L   S+ +L+    LP LE L V  N
Sbjct: 474 LNCKILNLKKNSIDNLNSLSVLPKLEILIVDDN 506

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405977843|gb|EKC42272.1| Geranylgeranyl transferase type-2 subunit alpha [Crassostrea gigas]

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 271/568 (47%), Gaps = 100/568 (17%)

Query: 2   HGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD 57
           HGR K   + Q+     K+R  K+K Y       F+KR N E+D+E L LT E+L   PD
Sbjct: 10  HGRLKVKTTAQQEEAKRKEREQKLKLYTAATSGAFKKRLNGEFDEEGLKLTGEILSVNPD 69

Query: 58  INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117
             SLWNYRKE+ L MK     E + +L+  EL   + CL   PKSYG W  R ++L+++ 
Sbjct: 70  FYSLWNYRKEIFLFMKDNKETEFVQKLMQDELGFLESCLKVNPKSYGAWHHRSFILENMP 129

Query: 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177
             P++E+EL+LCN +LE DERNFHCWDYRR+V     V   +EL Y+TEKI+ NFSNYS+
Sbjct: 130 -LPDWERELQLCNTFLEYDERNFHCWDYRRFVVLTSDVDLEQELAYTTEKIQTNFSNYSS 188

Query: 178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237
           WHYRSKLLP+++PDP + + +++D  + E   V++A+FT+P DQSAWFY RWLLG     
Sbjct: 189 WHYRSKLLPVIFPDPTHPVRVQEDILLQEHETVQNAIFTDPDDQSAWFYHRWLLGRGRKK 248

Query: 238 VQIISA-GVLPSGVTFVTFNQLVDLTSTSQIKVDSN---VLMSWTSLNGA-SRSFIWV-- 290
           +QI        +    V     + +    Q+ V+ N   V   W ++ G  S S IW+  
Sbjct: 249 LQISCVHASRKTNQILVLLTNYIQVNHGHQLSVNINSSPVTGEWRNVTGTNSYSIIWILT 308

Query: 291 ------------------------RF---------------LLSLSCPYRNYISVALLTS 311
                                   +F               + S     R  I ++   S
Sbjct: 309 VKDGFPGGEDLSIGVTLLTESDCTQFSQGLQLAEGQDEAWTMASYKAGTRFSIELSAAAS 368

Query: 312 ITL------LQHLHPGSSDSNEIILKRFDLLKTLDPL---------------------RL 344
            T+      +Q LH    ++  ++L    L+K +DP+                     R 
Sbjct: 369 STMEKELEAIQELHSVEPENKWVLLTLLYLMKAIDPVHEKYQDDITEAIEKLTAVDSKRK 428

Query: 345 NYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCL 404
            +Y+D +SK+ +E  +       +   LS L LTS+ H       +++D+S N LT+  L
Sbjct: 429 AFYRDLKSKFMMEKILDVQDVNTRDMTLSGLDLTSLCHTEWMVLVQELDVSQNHLTS--L 486

Query: 405 RHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLS 464
           + L  L     L   +  + S+    H   L+ L +  NA                  L 
Sbjct: 487 KPLGNLPCLVVLIANNNDIDSVEGLQHCKQLKKLHLQKNA------------------LR 528

Query: 465 SLHVFPHLPS--LESLDVSHNAIDHIED 490
           ++  F  L S  LE ++VS N + +IE+
Sbjct: 529 TVQAFSTLSSLPLEDVNVSGNPLCNIEN 556

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|291222086|ref|XP_002731049.1| PREDICTED: Rab geranylgeranyltransferase alpha-like [Saccoglossus kowalevskii]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 256/478 (53%), Gaps = 35/478 (7%)

Query: 1   MHGRKKESVSV--QEAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
            HGR K   +   QEAK+  R  K++ Y+   +  F+KR N+E+D+EAL +T ++L    
Sbjct: 44  FHGRLKVKTTAEQQEAKRKEREKKLQIYNAATKKAFQKRDNKEFDEEALEITGQMLSANS 103

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  ++WNYRKEV L  K     +EL ++   EL   + CL   PKSYG W  RC+V+D++
Sbjct: 104 DFTTIWNYRKEVFLDYKKKKTPDELVKIFKSELVFLESCLRYNPKSYGVWHHRCFVMDNM 163

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              P+++ EL+LCN +LE DERNFHCWDYRR+V  R KV   +E+ ++TEKI +NFSN+S
Sbjct: 164 PN-PDWKNELKLCNKFLEYDERNFHCWDYRRFVVMRSKVPAEEEIAFTTEKISSNFSNFS 222

Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS 236
           +WHYRSKLLP+++PDP     + +D    E+ +V++A FT+P DQSAWFY RWLLG   +
Sbjct: 223 SWHYRSKLLPVVHPDPEKKERVREDILHKEYELVQNAFFTDPNDQSAWFYHRWLLGRAEA 282

Query: 237 PVQIISAGVLPS-GVTFVTFNQLVDLTSTS-QIKVDSNVL-MSWTSL---------NGAS 284
           P  I S  +  S     V F + +D+      + ++ N++  SW S          N   
Sbjct: 283 PQSIRSVLICRSINRIVVCFTKPLDIVQQPLSVSINGNLIKTSWYSASDTECVIKDNSTP 342

Query: 285 RSFIWVRFLLSLSCPYRNYISV-------------ALLTSITLLQHLHPGSSDSNEIILK 331
            +          S   +N                  LLT + L++ L P      E  L+
Sbjct: 343 ETVFSSDLSAETSAVLQNEFESCQQLQELEPENKWCLLTVVLLMRALDPVK--HQEQTLE 400

Query: 332 RFDLLKTLDPLRLNYYKDSESKYKIE-TFIQTNPRANQITNLSSLQLTSIHHMHCFAHCK 390
             + LK +D  R+NYY D  SK+ IE   I++    ++I +LS+ +L+ ++H        
Sbjct: 401 YIETLKKVDSYRINYYNDLRSKFIIENAIIESLSHDDKIMDLSNKRLSCLYHNDHMVLMT 460

Query: 391 QVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
           +++LS N L++  LRH       E L     +++ L     LP L+ L + +N    I
Sbjct: 461 KINLSANQLSS--LRHCYMFQCVEILNCDDNNINDLSDVSGLPCLQQLSMQNNCITTI 516

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|391338990|ref|XP_003743836.1| PREDICTED: geranylgeranyl transferase type-2 subunit alpha-like [Metaseiulus occidentalis]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 254/492 (51%), Gaps = 71/492 (14%)

Query: 2   HGRKKESVSVQEAKK----RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD 57
           HGR K   + Q+A++    R  K   Y      I++KR   E DDE L+ T+ +L N PD
Sbjct: 6   HGRVKVKTTAQQAEEKRLEREKKKAAYLAATGLIYKKRTAGELDDELLNYTAGILMNNPD 65

Query: 58  INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117
            ++LWN R+E+ L MKA   + +       EL LT+  L+  PKSYG+WF R +  +++ 
Sbjct: 66  DSTLWNIRREIFLKMKADGIDTDGR--TKDELSLTQQTLMKNPKSYGSWFHRGWTNENLP 123

Query: 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177
            +P+++KELEL   +LE D+RNFHCWDYRR++  ++ V+  +EL +S ++I +NFSNYS+
Sbjct: 124 DSPDWKKELELSERFLEKDDRNFHCWDYRRFLVAKNSVSDAEELEFSRKRINSNFSNYSS 183

Query: 178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237
           WHYRSKLLP L P   + + IE+ +   EF +V +A FT+P+DQSAW Y RWLLG+    
Sbjct: 184 WHYRSKLLPKLTPG-RDGVSIEKKQLEAEFKLVLNAAFTDPQDQSAWMYHRWLLGKEEPK 242

Query: 238 VQIISAGVLPSGVT-FVTFNQLVDLTSTSQIKVDSNVLMS--WTSLNGASRSFIWVRFL- 293
             ++     P   +    F++ +   +      +  VL    W  + G   +++W R+  
Sbjct: 243 GALMLLKWYPKERSVLAVFDKALTENTLPVEAPEGQVLEGPKWEKVGGLPAAWVW-RYQY 301

Query: 294 ---------------LSLSC-PYRNYISVA------------------------------ 307
                          L LSC  YR+ +                                 
Sbjct: 302 GDLGEPESIVVGSTKLCLSCTEYRSDLGAETPESLLERRANLQWQLESTEQIIEMEPDSK 361

Query: 308 --LLTSITLLQHLHPGSSDSNEIILKRF---DLLKTLDPLRLNYYKDSESKYKIETFIQT 362
             LLTS+ LL  + P     +   L+++   D LK +DP R NYY D +SK  IE  ++ 
Sbjct: 362 WPLLTSVVLLHAMKP-----DPCHLRKYRVLDKLKEVDPYRKNYYDDLKSKLLIEDHLKP 416

Query: 363 NPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS 422
           N       +LSSL LTS+H  H  A  +++DLSNN LT   LRHL      +SL +T  +
Sbjct: 417 NTLE---VDLSSLGLTSLHGCHLMATAEKLDLSNNQLTLEKLRHLRNCARLKSLIVTGNA 473

Query: 423 LSSLHVFPHLPS 434
           ++   VF  LPS
Sbjct: 474 VTKDDVFDFLPS 485

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260824986|ref|XP_002607448.1| hypothetical protein BRAFLDRAFT_276668 [Branchiostoma floridae] gi|229292795|gb|EEN63458.1| hypothetical protein BRAFLDRAFT_276668 [Branchiostoma floridae]

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 164/475 (34%), Positives = 234/475 (49%), Gaps = 78/475 (16%)

Query: 1   MHGRKKESVSV--QEAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   +   QEAK+  R  K+  Y      +FEKRKN E+D EAL LT  +L +  
Sbjct: 1   MHGRLKVKTTAEQQEAKRKEREEKLSKYQAATGRLFEKRKNAEHDGEALDLTGRILAHNS 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  ++WNYRKE+        + +E+ +L   EL   + CL + PKSY  W  RC+V+D +
Sbjct: 61  DFLTMWNYRKEIFQAFHKDKSSDEMQQLYQDELSFLETCLKSNPKSYSVWEHRCWVMDCM 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
            + PN+++EL LC  +LE DERNFHCWDYRR+V  R  + P +EL +ST+KI +NFSNYS
Sbjct: 121 PQ-PNWQRELLLCGKFLEYDERNFHCWDYRRFVVRRANIPPQEELKFSTDKISSNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG--ER 234
           +WHYRSKLLPL++PD      +E+   + E  + ++A FT+P DQSAWFY RWLLG  ER
Sbjct: 180 SWHYRSKLLPLVHPDMEQPQGVEETALLQEHELAQNAFFTDPNDQSAWFYHRWLLGRAER 239

Query: 235 TSPVQII-------------------SAGVL---------------PSGVTFVTFNQLV- 259
              ++ +                   SA  L               P G    TF Q++ 
Sbjct: 240 DQSIRCLHVCRPLNRLVATFSKHLKASAATLNVVKDGEVITGRWHTPRGTD--TFEQVLI 297

Query: 260 ----------DLTSTSQIKVDSNV-LMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVA- 307
                     D      + +D+   L+    + GA    ++ R +      +R+ +SVA 
Sbjct: 298 FEFPEHSLTPDRDQHIHVTLDTEAGLVGRECVLGAGHPEVFSRDITESQELFRSELSVAK 357

Query: 308 ---LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPL-------------------RLN 345
              L   +   Q LH    D+   IL    L++ +DP+                   R N
Sbjct: 358 SSVLQQELESCQQLHELEPDNKWAILSVVLLMRAIDPITYQEQTLQYVDKLTSLDSYRRN 417

Query: 346 YYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT 400
           YY D  S++ IE  +  +       +LS   LT + H+       Q+DLSNN LT
Sbjct: 418 YYSDLSSRFLIENTVMQSEEGTNKLDLSGKGLTCVRHLDHMTLVVQLDLSNNRLT 472

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147898455|ref|NP_001086755.1| Rab geranylgeranyltransferase alpha [Xenopus laevis] gi|50415183|gb|AAH77401.1| Rabggta-prov protein [Xenopus laevis]

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 278/572 (48%), Gaps = 95/572 (16%)

Query: 1   MHGRKKESVSV--QEAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   ++  QEAK+  R  K++ Y +  +   +KR+N + D EAL LT+++L   P
Sbjct: 1   MHGRIKVKTTLEQQEAKRKEREKKLQLYVSATQAALQKRENGQLDKEALDLTAQILSLNP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  SLWN R+EV L ++   ++EE+  L   EL   ++CL   PKSYGTW+ RC+++  I
Sbjct: 61  DFASLWNLRREVFLQLQTDRSDEEMQSLCSGELSFLENCLRVSPKSYGTWYHRCWIM-KI 119

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              P++ +EL LCN +LE+DERNFHCWDYRR+VT    V   +EL ++T  I  NFSNYS
Sbjct: 120 MPKPDWARELALCNRFLEIDERNFHCWDYRRFVTQSSSVPDPEELEFTTSLISKNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS 236
           +WHYRSKLLP ++PD      + +   +NE  +V++A FT+P DQSAWFY RWLLG    
Sbjct: 180 SWHYRSKLLPQIHPDQLRIGRVTEGALLNELELVQNAFFTDPNDQSAWFYHRWLLGRADH 239

Query: 237 PVQIISAGV-LPSGVTFVTFNQLVDLTSTSQIKV-DSNVLMSW-TSLNGASRSFIWV--- 290
           P+ I    V L  G   VTF+Q V +     + + D  + +SW T+     RS  WV   
Sbjct: 240 PLSIRCVMVSLDEGCVSVTFSQSVAVQDDLILFLNDKPIFVSWRTAGRKEKRSLFWVCDL 299

Query: 291 --RFLLSLSCPYR--------------------------------NYISVAL-------- 308
               +    C Y+                                 + S+ L        
Sbjct: 300 PKECINDRCCQYKFQVLWKDGEAKKECILYPGTRETWCRDSATENEFFSLDLSEGKSNVL 359

Query: 309 ---LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNP- 364
              L S   LQ L P   ++   +L    L++ LDP  L Y K+S   +  ET    +P 
Sbjct: 360 QQELKSCKELQELEP---ENKWCLLTIILLMRALDP--LAYEKESLGCF--ETLKVVDPM 412

Query: 365 RANQITNL-SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNC-LRHLTPLVACESLKLTHCS 422
           R+    +L S  Q+ +      +A    +DLS   LT  C L HL         ++TH +
Sbjct: 413 RSGYYDDLRSKFQMENAILKMEYAESFIIDLSKKGLTRLCHLEHLG--------QVTHMN 464

Query: 423 LSS--LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480
           LS+  L V P               N+ +    Q L++ +  +  L    +LP LE L +
Sbjct: 465 LSANRLRVLPS--------------NLSMLRRLQMLEVDNNEVVRLEGLWNLPQLEELSL 510

Query: 481 SHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
             N I+++ D       +C  +    L GNP+
Sbjct: 511 QCNQIENVSD--LQPLASCPHLSVLHLQGNPL 540

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345492134|ref|XP_003426785.1| PREDICTED: LOW QUALITY PROTEIN: geranylgeranyl transferase type-2 subunit alpha-like [Nasonia vitripennis]

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 264/532 (49%), Gaps = 75/532 (14%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   + ++ K    +R  K   +   +E +FEKRK Q++DDE L +T ++L   P
Sbjct: 1   MHGRVKVRTTAEQEKIKQAERQKKAVEFKKGVELVFEKRKKQKWDDEILLITEKLLVRHP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D+ +LWN R+E  L+     ++EE  E +++EL LT+  L   PKSY  W QR +V++H+
Sbjct: 61  DVYTLWNIRRETFLN--NNWSDEERIEKLEKELSLTESSLRENPKSYCVWHQRTWVIEHL 118

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+++E++LCN  L LDERNFHCWDYRR++  +  V   +EL ++T KI  NFSNYS
Sbjct: 119 PN-PNWKREIDLCNKCLNLDERNFHCWDYRRFIASKANVPDTEELEFTTTKILNNFSNYS 177

Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS 236
           +WH RSK+L  LYP   + LPI  DK+  E  +V +A FT+P D SAWFY RWLL    S
Sbjct: 178 SWHLRSKILQKLYPSNVHDLPIRADKHDEELDLVMNATFTDPNDSSAWFYHRWLLDYWKS 237

Query: 237 PVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIW-VRFLLS 295
           P+++  A VL        F++ V       +  D      W S NG + S  W   F  +
Sbjct: 238 PLKLWRA-VLTKTTLTAAFHKEVPCDFELFLN-DKKYECEWKSANGKNVSAAWYAVFEKA 295

Query: 296 LSCPYR--------------------------------------------NYISVA---- 307
           L   Y+                                            NY ++A    
Sbjct: 296 LDDDYKKIFLKFEGNHHEFKPSIKSSSEWIYESTTLSGNHNNPKLNEQLENYQTLAKMEP 355

Query: 308 -----LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE---TF 359
                 LTSI L+ +++P   +S   I+K F  L  +DPLR NYYKD  SKY +      
Sbjct: 356 CNKWARLTSIHLMLNINPIGDNSK--IIKEFGELIRIDPLRANYYKDMCSKYTLYYNLNP 413

Query: 360 IQTNPRANQIT---NLSSLQLTSIHHMHCF-AHCKQVDLSNNPLTNNCLRHLTPLVACES 415
           I   P  +      NLS+L+LTSI     +    ++V+ SNN + N  L  L  L  C  
Sbjct: 414 IDVEPDGSDNACDINLSNLELTSISSQEPYLTFYREVNFSNNCIENR-LHQLYTLQQCVK 472

Query: 416 LKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSLSS 465
           L L+  ++SS+  FP L +L  L +  N  N    +C   Q   LT   L  
Sbjct: 473 LDLSKNNISSIKSFPTLHNLRVLLLHENQINNYEEVCDLIQRHNLTKIDLQG 524

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355778477|gb|EHH63513.1| hypothetical protein EGM_16497 [Macaca fascicularis]

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 261/510 (51%), Gaps = 76/510 (14%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
            R  P   +    +        V+F++ + + S ++I +    DS +++ W + +G +R 
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRP 296

Query: 286 SFIWVR---FLLSL-----------SCPYRNYISV----ALLTSITLLQHLHP------- 320
           S +WV      LS+           SC     +       LLT I L++ L P       
Sbjct: 297 SHVWVSQDWCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 356

Query: 321 ---------------GSSDSNEIILKRFDL-------LKTLDPLRLNYYKDSESKYKIET 358
                          G  ++ +   +R          L+ +DP+R  Y  D  SK+ +E 
Sbjct: 357 LQYFQTLKASCARRTGQGEAQQAGGRRLTCIPCPPHPLQAVDPMRAAYLDDLRSKFLLEN 416

Query: 359 FIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC---- 413
            +     A  ++ +L+   LT + H+        +DLS+N      LR L P +A     
Sbjct: 417 SVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRTLPPALAALRCL 471

Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
           E L+ +  ++ SL    +LP L+ L + HN
Sbjct: 472 EVLQASDNAIESLDGVTNLPRLQELLLCHN 501

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355693177|gb|EHH27780.1| hypothetical protein EGK_18063 [Macaca mulatta]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 173/510 (33%), Positives = 261/510 (51%), Gaps = 76/510 (14%)

Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
            R  P   +    +        V+F++ + + S ++I +    DS +++ W + +G +R 
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRP 296

Query: 286 SFIWVR---FLLSL-----------SCPYRNYISV----ALLTSITLLQHLHP------- 320
           S +WV      LS+           SC     +       LLT I L++ L P       
Sbjct: 297 SHVWVSQDWCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 356

Query: 321 ---------------GSSDSNEIILKRFDL-------LKTLDPLRLNYYKDSESKYKIET 358
                          G  ++ +   +R          L+ +DP+R  Y  D  SK+ +E 
Sbjct: 357 LQYFQTLKASCARRTGQGEAQQAGGRRLTCVPCPPHPLQAVDPMRAAYLDDLRSKFLLEN 416

Query: 359 FIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC---- 413
            +     A  ++ +L+   LT + H+        +DLS+N      LR L P +A     
Sbjct: 417 SVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRTLPPALAALRCL 471

Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
           E L+ +  ++ SL    +LP L+ L + +N
Sbjct: 472 EVLQASDNAIESLDGVTNLPRLQELLLCNN 501

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	522
UNIPROTKB|A5A779	567	RABGGTA "Geranylgeranyl transf	0.547	0.504	0.432	4.7e-70
UNIPROTKB|F1PIE1	567	RABGGTA "Uncharacterized prote	0.547	0.504	0.429	1.6e-69
UNIPROTKB|Q5EA80	567	RABGGTA "Geranylgeranyl transf	0.547	0.504	0.432	2e-69
MGI|MGI:1860443	567	Rabggta "Rab geranylgeranyl tr	0.547	0.504	0.426	2.3e-68
ZFIN|ZDB-GENE-060929-1042	580	rabggta "Rab geranylgeranyltra	0.365	0.329	0.443	3.5e-67
RGD|621697	567	Rabggta "Rab geranylgeranyltra	0.944	0.869	0.329	1.9e-60
UNIPROTKB|Q92696	567	RABGGTA "Geranylgeranyl transf	0.904	0.832	0.335	8.1e-60
UNIPROTKB|H0YLH3	424	RABGGTA "Geranylgeranyl transf	0.547	0.674	0.422	2.7e-59
UNIPROTKB|F1MGN1	333	RABGGTA "Geranylgeranyl transf	0.446	0.699	0.485	6.6e-58
FB|FBgn0037293	515	CG12007 [Drosophila melanogast	0.304	0.308	0.525	2e-49

UNIPROTKB|A5A779 RABGGTA "Geranylgeranyl transferase type-2 subunit alpha" [Sus scrofa (taxid:9823)]

 Score = 608 (219.1 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
 Identities = 132/305 (43%), Positives = 184/305 (60%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y    +T+F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQTATQTVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQ--LVD-LTSTSQIKVDSNVL-MSWTSLNGASR- 285
              R  P   +    +        V+F++  LV   T T  + V+ + L + W + +G +R 
Sbjct:   238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGPSTETLLLMVNESPLSVEWRTPDGRNRP 296

Query:   286 SFIWV 290
             S +W+
Sbjct:   297 SHVWL 301

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PIE1 RABGGTA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 605 (218.0 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
 Identities = 131/305 (42%), Positives = 184/305 (60%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y +  +T+F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQTVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++A  + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQRLEAQKSPEELAALVKTELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDL---TSTSQIKVDSNVL-MSWTSLNGAS-R 285
              R  P   +    +        V+F++ V +   T T  + VD + L + W + +G +  
Sbjct:   238 -RADPQDALRCLHVSRDEACLTVSFSRPVLVGPRTETLLLMVDESPLAVEWRTPDGRNWP 296

Query:   286 SFIWV 290
               +W+
Sbjct:   297 GHVWL 301

GO:0018342 "protein prenylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|Q5EA80 RABGGTA "Geranylgeranyl transferase type-2 subunit alpha" [Bos taurus (taxid:9913)]

 Score = 604 (217.7 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 132/305 (43%), Positives = 183/305 (60%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y    +T+F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
              R  P   +    +        V+F++ + + S   T  + VD + L + W +  G +R 
Sbjct:   238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDESPLAVEWRTPEGRNRP 296

Query:   286 SFIWV 290
             S IW+
Sbjct:   297 SHIWL 301

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1860443 Rabggta "Rab geranylgeranyl transferase, a subunit" [Mus musculus (taxid:10090)]

 Score = 599 (215.9 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 130/305 (42%), Positives = 183/305 (60%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLRELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
              R  P  ++    +        V F++ + + S   T  + VD   L + W + +G +R 
Sbjct:   238 -RAEPHDVLCCLHVSREEACLSVCFSRPLIVGSKMGTLLLTVDEAPLSVEWRTPDGRNRP 296

Query:   286 SFIWV 290
             S +W+
Sbjct:   297 SHVWL 301

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISO;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=ISO;IMP

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-060929-1042 rabggta "Rab geranylgeranyltransferase, alpha subunit" [Danio rerio (taxid:7955)]

 Score = 448 (162.8 bits), Expect = 3.5e-67, Sum P(3) = 3.5e-67
 Identities = 87/196 (44%), Positives = 124/196 (63%)

Query:     1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   + Q+     K+R  K+K +    +++ +KR   E+D+EAL LT ++L + P
Sbjct:     1 MHGRVKVKTTAQQEEEKRKEREKKLKAFVCARDSVLKKRSAGEHDEEALDLTQQLLSSNP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWNYR+EVLLH++    ++E+ +L + EL   + CL   PKSYG W  R +V   +
Sbjct:    61 DFATLWNYRREVLLHLETLREKDEVQKLYESELHFIEACLKVNPKSYGCWHHRSWVNTRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              + P++ +EL LC+  L LDERNFHCWDYRR V     V+  +EL ++   I +NFSNYS
Sbjct:   121 PQ-PDWTRELGLCDRCLSLDERNFHCWDYRRLVVKESGVSVEQELQFTDRLIGSNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDP 192
             +WHYRS LLP L P P
Sbjct:   180 SWHYRSTLLPQLRPQP 195

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|621697 Rabggta "Rab geranylgeranyltransferase, alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 181/550 (32%), Positives = 273/550 (49%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
              R  P  ++    +        V F++ + + S   T  + VD   L + W + +G +R 
Sbjct:   238 -RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query:   286 SFIWVRFLLSLSCPYRNYISVALLTSITLLQH----LHPGSSDSNEIILKRFDLLKTLDP 341
             S +W+       C     +  A L    L QH    +  GS    E +L     LK    
Sbjct:   297 SHVWL-------CD----LPAASLND-QLPQHTFRVIWTGSDSQKECVL-----LKDRPE 339

Query:   342 LRLNYYKDSESKYKIETFIQTNP-RANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT 400
                      E  ++ E  ++ +    +++ +   LQ     +  C      +  + +PL 
Sbjct:   340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query:   401 --NNCLRHLTPLVACESLKLTHCS-LSSLHVFPH-LPSLESLDVS--HNAPN--IILCVY 452
                  L++ + L A + ++  +   L S  +  + +  +E  DV   H A     +LC  
Sbjct:   400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL 459

Query:   453 FQSLKLTHCSLSS--LHVFPH----LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTG 506
              Q L +TH  LS   L   P     L  LE L  S NA++++ D V A      +++L  
Sbjct:   460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGV-ANLPRLQELLLCN 517

Query:   507 NPVSADMVVK 516
             N +     ++
Sbjct:   518 NRLQQSAAIQ 527

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=ISO;IDA

UNIPROTKB|Q92696 RABGGTA "Geranylgeranyl transferase type-2 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 174/519 (33%), Positives = 263/519 (50%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
              R  P   +    +        V+F++ + + S  +I +    DS +++ W + +G +R 
Sbjct:   238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRP 296

Query:   286 SFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLN 345
             S +W+       C     +  A L    L QH       + ++  K   LLK        
Sbjct:   297 SHVWL-------CD----LPAASLND-QLPQHTFRVIWTAGDV-QKECVLLKGRQEGWCR 343

Query:   346 YYKDSESKYKIETFIQTNP-RANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--NN 402
                  E  ++ E  ++ +    +++ +   LQ     +  C      +  + +PL     
Sbjct:   344 DSTTDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query:   403 CLRHLTPLVACESLKLTHCS-LSSLHVFPH-LPSLESLDVS--HNAPN--IILCVYFQSL 456
              L++   L A + ++ T+   L S  +  + +  +E  +V   H A     +LC   Q L
Sbjct:   404 TLQYFQTLKAVDPMRATYLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLL 463

Query:   457 KLTHCSLSS--LHVFPH----LPSLESLDVSHNAIDHIE 489
              +TH  LS   L   P     L  LE L  S NAI+ ++
Sbjct:   464 LVTHLDLSHNRLRTLPPALAALRCLEVLQASDNAIESLD 502

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

UNIPROTKB|H0YLH3 RABGGTA "Geranylgeranyl transferase type-2 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 129/305 (42%), Positives = 185/305 (60%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
              R  P   +    +        V+F++ + + S  +I +    DS +++ W + +G +R 
Sbjct:   238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRP 296

Query:   286 SFIWV 290
             S +W+
Sbjct:   297 SHVWL 301

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

UNIPROTKB|F1MGN1 RABGGTA "Geranylgeranyl transferase type-2 subunit alpha" [Bos taurus (taxid:9913)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 119/245 (48%), Positives = 157/245 (64%)

Query:     1 MHGRKKESVSVQ--EAKK--RSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
             MHGR K   S +  EAK+  R  K+K Y    +T+F+KR+  E D+  L LTS++L   P
Sbjct:     1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELDESVLELTSQILGANP 60

Query:    57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
             D  +LWN R+EVL  ++   + EEL  LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct:    61 DFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query:   117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
                PN+ +ELELC  +LE+DERNFHCWDYRR+V  +  V P +EL ++   I  NFSNYS
Sbjct:   121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYS 179

Query:   177 AWHYRSKLLPLLYPDPNN----HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
             +WHYRS LLP L+P P++     LP  +D  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct:   180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237

Query:   233 ERTSP 237
              R  P
Sbjct:   238 -RADP 241

GO:0018342 "protein prenylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

FB|FBgn0037293 CG12007 [Drosophila melanogaster (taxid:7227)]

 Score = 473 (171.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 84/160 (52%), Positives = 110/160 (68%)

Query:    73 KATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132
             K    E++ H +   EL LT+ CL+  PKSY  W  RC+ L+   RA ++++E++LCN Y
Sbjct:   109 KKAAGEDKAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLEQNPRA-DWQQEVKLCNKY 167

Query:   133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDP 192
             L+ DERNFH WDYRRYVT +  V   +EL++ TEKI ANFSNYS+WH+RS LLP LYP+ 
Sbjct:   168 LKFDERNFHTWDYRRYVTGKAMVPATQELDFCTEKIRANFSNYSSWHHRSLLLPELYPNQ 227

Query:   193 NNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
                 P+ ++K   E  MV +A FT+P D SAWFYQRWLLG
Sbjct:   228 QRDRPMSEEKLQKELEMVLTAAFTDPNDSSAWFYQRWLLG 267

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0018342 "protein prenylation" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5EA80	PGTA_BOVIN	2, ., 5, ., 1, ., 6, 0	0.3281	0.9099	0.8377	yes	N/A
Q5NVK5	PGTA_PONAB	2, ., 5, ., 1, ., 6, 0	0.3235	0.9118	0.8395	yes	N/A
Q92696	PGTA_HUMAN	2, ., 5, ., 1, ., 6, 0	0.3217	0.9118	0.8395	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.60	0.824
3rd Layer	2.5.1	0.766
4th Layer	2.5.1.59	LOW CONFIDENCE prediction!
4th Layer	2.5.1.58	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	522
COG5536	328	COG5536, BET4, Protein prenyltransferase, alpha su	4e-43
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	7e-11
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	2e-09
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  155 bits (394), Expect = 4e-43
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 10  SVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVL 69
            +    +R    + YH LM     KR+ +EY   AL LT E++   P+  ++WNYR  +L
Sbjct: 17  DLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSIL 76

Query: 70  LHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELC 129
            H++    ++E   L+D EL    + L   PK+Y  W  R ++L+     P++ +EL + 
Sbjct: 77  KHVQMVSEDKEH--LLDNELDFLDEALKDNPKNYQIWHHRQWMLEL-FPKPSWGRELFIT 133

Query: 130 NYYLELDERNFHCWDYRRYVTDRHKVAPL-----KELNYSTEKIEANFSNYSAWHYRSKL 184
              L+ D RN+H W YRR+V    +          EL Y+T  IE +  N SAWH+R   
Sbjct: 134 KKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193

Query: 185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQII 241
           +   +   N    I Q     E   +   +FT+P +QS W Y R +  E  + + +I
Sbjct: 194 IERRF---NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMI 247

Length = 328

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 30/201 (14%)

Query: 44  ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY 103
           AL LT++V+R  P   ++W++R+  L  + A L E         EL   +D     PK+Y
Sbjct: 56  ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEE---------ELDFAEDVAEDNPKNY 106

Query: 104 GTWFQRCYVLDHISRAPNY-EKELELCNYYLELDERNFHCWDYRRYV---TDRHKVAPLK 159
             W  R ++ + +   P+   KELE     L LD +N+H W +R++V       +     
Sbjct: 107 QIWHHRRWLAEKL--GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE----D 160

Query: 160 ELNYSTEKIEANFSNYSAWHYR---SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT 216
           EL Y  + +E +  N SAW+ R       PLL         +E  +  +E      A+  
Sbjct: 161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL-------GGLEAMRD-SELKYTIDAILA 212

Query: 217 EPKDQSAWFYQRWLLGERTSP 237
            P+++S W Y R L  +    
Sbjct: 213 NPRNESPWRYLRGLFKDDKEA 233

Length = 320

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 42  DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101
           +E L    +V  + P    +W++R+ +   +    A        ++EL+ T+  L    K
Sbjct: 89  EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA--------NKELEFTRKILSLDAK 140

Query: 102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--- 158
           +Y  W  R +VL  +     +E ELE C+  LE D RN   W+ R +V  R   +PL   
Sbjct: 141 NYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITR---SPLLGG 194

Query: 159 ------KELNYSTEKIEANFSNYSAWHY 180
                  EL Y+ + I AN  N S W Y
Sbjct: 195 LEAMRDSELKYTIDAILANPRNESPWRY 222

Length = 320

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLL 188
           +EL  + + +E +  NYSAW+YR  LL  L
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLEKL 30

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 454 QSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
           +SL L++  L+ +    F  LP+L+ LD+S N +  I    F+   +   + L+GN 
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 124 KELELCNYYLELDERNFHCWDYRRYV 149
           +ELEL    LELD +N+  W+YRR++
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWL 26

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 22/76 (28%)

Query: 414 ESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VF 469
           +SL L++  L+ +    F  LP+L+ LD+S N                  +L+S+    F
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN------------------NLTSISPEAF 44

Query: 470 PHLPSLESLDVSHNAI 485
             LPSL SLD+S N +
Sbjct: 45  SGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 123 EKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182
            + L+L    + L+  N+  W +RR   +       +EL+++ +  E N  NY  WH+R 
Sbjct: 54  PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113

Query: 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231
            L   L PD  N           E       +  + K+  AW +++W+L
Sbjct: 114 WLAEKLGPDAAN----------KELEFTRKILSLDAKNYHAWSHRQWVL 152

Length = 320

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL-----TPLVACESLKLTHCSLSS-- 425
           S L+ +S+  +          L+NN L +  LR L         A E L L    L    
Sbjct: 103 SLLRSSSLQELK---------LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153

Query: 426 ----LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
                        L+ L++++N    I     ++L                 +LE LD++
Sbjct: 154 CEALAKALRANRDLKELNLANNG---IGDAGIRALA---------EGLKANCNLEVLDLN 201

Query: 482 HNAIDHIEDSVFA---KYEACVQVI-LTGNPVSA 511
           +N +     S  A        ++V+ L  N ++ 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	522
1ltx_A	567	Structure Of Rab Escort Protein-1 In Complex With R		7e-58
3pz1_A	332	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		8e-58
3dss_A	331	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		8e-58
3c72_A	334	Engineered Rabggtase In Complex With A Peptidomimet		9e-58
4ehm_A	330	Rabggtase In Complex With Covalently Bound Psoromic		9e-58
1dce_A	567	Crystal Structure Of Rab Geranylgeranyltransferase		4e-57
3dra_A	306	Candida Albicans Protein Geranylgeranyltransferase-		6e-08
3sfx_A	349	Cryptococcus Neoformans Protein Farnesyltransferase		8e-08
3q73_A	349	Cryptococcus Neoformans Protein Farnesyltransferase		8e-08
2f0y_A	379	Crystal Structure Of Human Protein Farnesyltransfer		1e-05
2f0y_A	379	Crystal Structure Of Human Protein Farnesyltransfer		2e-04
1jcq_A	382	Crystal Structure Of Human Protein Farnesyltransfer		2e-05
1jcq_A	382	Crystal Structure Of Human Protein Farnesyltransfer		3e-04
1o1r_A	380	Structure Of Fpt Bound To Ggpp Length = 380		3e-05
1o1r_A	380	Structure Of Fpt Bound To Ggpp Length = 380		1e-04
1o5m_A	377	Structure Of Fpt Bound To The Inhibitor Sch66336 Le		4e-05
1o5m_A	377	Structure Of Fpt Bound To The Inhibitor Sch66336 Le		1e-04
1qbq_A	333	Structure Of Rat Farnesyl Protein Transferase Compl		5e-05
1qbq_A	333	Structure Of Rat Farnesyl Protein Transferase Compl		1e-04
3pz4_A	379	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		6e-05
3pz4_A	379	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		4e-04
2r2l_A	315	Structure Of Farnesyl Protein Transferase Bound To		6e-05
2r2l_A	315	Structure Of Farnesyl Protein Transferase Bound To		1e-04
1ft1_A	377	Crystal Structure Of Protein Farnesyltransferase At		7e-05
1ft1_A	377	Crystal Structure Of Protein Farnesyltransferase At		5e-04
2bed_A	313	Structure Of Fpt Bound To Inhibitor Sch207736 Lengt		7e-05
2bed_A	313	Structure Of Fpt Bound To Inhibitor Sch207736 Lengt		2e-04
1n95_A	315	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		7e-05
1n95_A	315	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		1e-04
1nl4_A	312	Crystal Structure Of Rat Farnesyl Transferase In Co		7e-05
1nl4_A	312	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-04
1ft2_A	315	Co-Crystal Structure Of Protein Farnesyltransferase		1e-04
1ft2_A	315	Co-Crystal Structure Of Protein Farnesyltransferase		6e-04

>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567

Iteration: 1
 Score =  221 bits (563), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 19/305 (6%)
Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
            R  P  ++    +        V F++ + + S   T  + VD   L + W + +G +R 
Sbjct: 238 -RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296
Query: 286 SFIWV 290
           S +W+
Sbjct: 297 SHVWL 301

>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 332

Iteration: 1
 Score =  221 bits (563), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 3   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 62
Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 63  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 122
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 123 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 181
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 182 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 239
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
             +   ++                      S  +  V  + L S   L        W   
Sbjct: 240 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 275
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
                          LLT I L++ L P   +     L+ F  LK +DP+R  Y  D  S
Sbjct: 276 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 318
Query: 353 KYKIETFI 360
           K+ +E  +
Sbjct: 319 KFLLENSV 326

>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) Length = 331

Iteration: 1
 Score =  221 bits (563), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 2   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 61
Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 62  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 122 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 181 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
             +   ++                      S  +  V  + L S   L        W   
Sbjct: 239 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 274
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
                          LLT I L++ L P   +     L+ F  LK +DP+R  Y  D  S
Sbjct: 275 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 317
Query: 353 KYKIETFI 360
           K+ +E  +
Sbjct: 318 KFLLENSV 325

>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor Length = 334

Iteration: 1
 Score =  221 bits (563), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 5   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 64
Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 65  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 124
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 125 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 183
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 184 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 241
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
             +   ++                      S  +  V  + L S   L        W   
Sbjct: 242 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 277
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
                          LLT I L++ L P   +     L+ F  LK +DP+R  Y  D  S
Sbjct: 278 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 320
Query: 353 KYKIETFI 360
           K+ +E  +
Sbjct: 321 KFLLENSV 328

>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid Length = 330

Iteration: 1
 Score =  221 bits (562), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1   MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           +WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
             +   ++                      S  +  V  + L S   L        W   
Sbjct: 238 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 273
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
                          LLT I L++ L P   +     L+ F  LK +DP+R  Y  D  S
Sbjct: 274 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 316
Query: 353 KYKIETFI 360
           K+ +E  +
Sbjct: 317 KFLLENSV 324

>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567

Iteration: 1
 Score =  219 bits (557), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 2   HGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD 57
           HGR K   S ++A+    +R  K+K Y +  + +F+KR+  E D+  L LTS++L   PD
Sbjct: 2   HGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61
Query: 58  INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117
             +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  + 
Sbjct: 62  FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121
Query: 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177
             PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS+
Sbjct: 122 E-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180
Query: 178 WHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
           WHYRS LLP L+P P+      LP  ++  + E  +V++A FT+P DQSAWFY RWLLG 
Sbjct: 181 WHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG- 237
Query: 234 RTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR-S 286
           R  P  ++    +        V F++ + + S   T  + VD   L + W + +G +R S
Sbjct: 238 RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPS 297
Query: 287 FIWV 290
            +W+
Sbjct: 298 HVWL 301

>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 306

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 22/214 (10%)
Query: 24  YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
           Y  +M  +    K +EY + AL +T   +  +    ++W YR  +L      L    L++
Sbjct: 32  YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNIL----KNLPNRNLYD 87
Query: 84  LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYE----KELELCNYYLELDERN 139
               EL   ++  L   K+Y  W  R  ++  I    N +    +E ++    L  D +N
Sbjct: 88  ----ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143
Query: 140 FHCWDYRRYVTDRHKV-APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI 198
            H W YR+++ D   +    KEL++  + I+ +  N SAW +R  LL         HL  
Sbjct: 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-----SKKHLAT 198
Query: 199 EQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
           + +    E + V+  +   P++ S W Y   LLG
Sbjct: 199 D-NTIDEELNYVKDKIVKCPQNPSTWNY---LLG 228

>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In Complex With Fpt-Ii And Tipifarnib Length = 349

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 24  YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
           Y + M+        +E  + AL LT  ++R  P   ++W YR  +L  +  +L +     
Sbjct: 52  YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED----- 106
Query: 84  LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
               EL+L  +  +   KSY  W  R  +LD IS   +   E+E  +  L  D +N+H W
Sbjct: 107 ----ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTW 161
Query: 144 DYRRYV----TDRHKVAPLK---ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
            Y  ++    +   +++  +   EL++  E +  +  N SAW +R  L  +  P      
Sbjct: 162 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR-VSRPGAETSS 220
Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLP 247
              QD    E   +  ++   P + SAW Y R  L   + P+  I   +LP
Sbjct: 221 RSLQD----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 267

>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 349

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 24  YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
           Y + M+        +E  + AL LT  ++R  P   ++W YR  +L  +  +L +     
Sbjct: 53  YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED----- 107
Query: 84  LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
               EL+L  +  +   KSY  W  R  +LD IS   +   E+E  +  L  D +N+H W
Sbjct: 108 ----ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTW 162
Query: 144 DYRRYV----TDRHKVAPLK---ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
            Y  ++    +   +++  +   EL++  E +  +  N SAW +R  L  +  P      
Sbjct: 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR-VSRPGAETSS 221
Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLP 247
              QD    E   +  ++   P + SAW Y R  L   + P+  I   +LP
Sbjct: 222 RSLQD----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268

>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 39  EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98
           E  + A  LT + +       ++W++R+ +L  +     +++LHE    E+      +  
Sbjct: 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYITAIIEE 161
Query: 99  QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL 158
           QPK+Y  W  R  +++ + R P+  +ELE     L  D +N+H W +R++V    K+   
Sbjct: 162 QPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD- 217
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV-FT- 216
            EL Y  + ++ +  N S W+ R             +  I      N+ +++E  V +T 
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAVLEREVQYTL 264
Query: 217 -----EPKDQSAWFYQRWLLGER 234
                 P ++SAW Y + +L +R
Sbjct: 265 EMIKLVPHNESAWNYLKGILQDR 287

>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-RDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212

>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 39  EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98
           E  + A  LT + +       ++W++R+ +L  +     +++LHE    E+      +  
Sbjct: 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYITAIIEE 161
Query: 99  QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL 158
           QPK+Y  W  R  +++ + R P+  +ELE     L  D +N+H W +R++V    K+   
Sbjct: 162 QPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD- 217
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV-FT- 216
            EL Y  + ++ +  N S W+ R             +  I      N+ +++E  V +T 
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAVLEREVQYTL 264
Query: 217 -----EPKDQSAWFYQRWLLGER 234
                 P ++SAW Y + +L +R
Sbjct: 265 EMIKLVPHNESAWNYLKGILQDR 287

>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-RDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212

>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 111 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 161
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 162 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 218
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 219 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 264
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 265 YTLEMIKLVPHNESAWNYLKGILQDR 290

>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 110 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 169
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 170 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 215

>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 158
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287

>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212

>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 64  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 114
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 115 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 171
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 172 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 217
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 218 YTLEMIKLVPHNESAWNYLKGILQDR 243

>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 63  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 122
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 123 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 168

>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 110 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 160
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 161 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 217
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 218 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 263
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 264 YTLEMIKLVPHNESAWNYLKGILQDR 289

>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY    IE    NY
Sbjct: 109 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 168
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 169 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 214

>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 55  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 105
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 106 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 162
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 163 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 208
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 209 YTLEMIKLVPHNESAWNYLKGILQDR 234

>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 54  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 113
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 114 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 159

>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 158
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287

>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY    IE    NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212

>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 55  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 105
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 106 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 162
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 163 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 208
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 209 YTLEMIKLVPHNESAWNYLKGILQDR 234

>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 54  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 113
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 114 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 159

>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 54  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 104
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233

>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 53  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158

>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 54  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 104
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233

>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY T  IE    NY
Sbjct: 53  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158

>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L EE         +      
Sbjct: 54  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 104
Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R  +++ + + P+  +ELE     L  D +N+H W +R++V    ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
               EL Y  + ++ +  N S W+ R             H  I      ++ +++E  V 
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
           +T       P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233

>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
           + R    E+  +L    +EL+  N+  W +RR +    +    +E+NY    IE    NY
Sbjct: 53  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
             WH+R  L+  L  DP+            E   +   +  + K+  AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	522
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-86
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	9e-70
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	3e-50
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	4e-50
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	8e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-45
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-04

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  277 bits (708), Expect = 1e-86
 Identities = 154/555 (27%), Positives = 237/555 (42%), Gaps = 50/555 (9%)

Query: 1   MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A     +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYV--NEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
           +WHYRS LLP L+P P++       + V   E  +V++A FT+P DQSAWFY RWLLG  
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 235 TSPVQIISAGVLPSGVTFVTF-----NQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIW 289
                +    V                    + +   +  ++ + + W + +G +R    
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 290 VRFLLSLSCPYRNYISVALLTSITLLQHLHPG--SSDSNEIILKRFDLLKTLDPLRLNYY 347
               L  +               T            D  E   +     + L    L+  
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE 359

Query: 348 KDSESKYKIETFIQ----------------TNPRA--------NQITNLSSLQLTSIHHM 383
           K +  + ++E+  +                   RA          +   S+L+       
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 384 HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
                 +   L  N +       +        L L H  L+ L     L  +  LD+SHN
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADV------RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN 473

Query: 444 A-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED-SVFAKYE 497
                 P +      + L+ +  +L ++    +LP L+ L + +N +             
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 498 ACVQVILTGNPVSAD 512
             V + L GN +  +
Sbjct: 534 RLVLLNLQGNSLCQE 548

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331

 Score =  225 bits (575), Expect = 9e-70
 Identities = 132/363 (36%), Positives = 186/363 (51%), Gaps = 48/363 (13%)

Query: 1   MHGRKKESVSVQE----AKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++      +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 2   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 61

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 62  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 122 P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180

Query: 177 AWHYRSKLLPLLY--PDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
           +WHYRS LLP L+  PD      + ++  + E  +V++A FT+P DQSAWFY RWLLG  
Sbjct: 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240

Query: 235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLL 294
           +   ++             +  +L +L   +                             
Sbjct: 241 SGRCELSVEKSTVLQSELESCKELQELEPEN----------------------------- 271

Query: 295 SLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKY 354
                        LLT I L++ L P   +     L+ F  LK +DP+R  Y  D  SK+
Sbjct: 272 ----------KWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKF 319

Query: 355 KIE 357
            +E
Sbjct: 320 LLE 322

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score =  175 bits (443), Expect = 3e-50
 Identities = 64/342 (18%), Positives = 116/342 (33%), Gaps = 50/342 (14%)

Query: 19  AKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAE 78
              + Y + M+        +E  + AL LT  ++R  P   ++W YR  +L  +  +L +
Sbjct: 48  MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED 107

Query: 79  EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDER 138
                    EL+L  +  +   KSY  W  R  +LD IS   +   E+E  +  L  D +
Sbjct: 108 ---------ELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLPDPK 157

Query: 139 NFHCWDYRRYVTDRHKVAPLK-------ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191
           N+H W Y  ++                 EL++  E +  +  N SAW +R  L       
Sbjct: 158 NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA 217

Query: 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVT 251
             +   ++      E   +  ++   P + SAW Y R  L   + P+  I   +LP   +
Sbjct: 218 ETSSRSLQD-----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272

Query: 252 FVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTS 311
            +                                +F +      L       + +AL   
Sbjct: 273 KL------------------------NPDIETVEAFGFPMPSDPLPEDTPLPVPLALE-- 306

Query: 312 ITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
              L       +  ++       L    D +R  Y++    +
Sbjct: 307 --YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score =  173 bits (439), Expect = 4e-50
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 19/226 (8%)

Query: 19  AKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAE 78
              + Y  +M  +    K +EY + AL +T   +  +    ++W YR  +L ++      
Sbjct: 27  LYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN---- 82

Query: 79  EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN----YEKELELCNYYLE 134
                 +  EL   ++  L   K+Y  W  R  ++  I    N      +E ++    L 
Sbjct: 83  ----RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138

Query: 135 LDERNFHCWDYRRYVTDRHKVAPLK-ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPN 193
            D +N H W YR+++ D   +     EL++  + I+ +  N SAW +R  LL       +
Sbjct: 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL------FS 192

Query: 194 NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
                  +    E + V+  +   P++ S W Y   +       + 
Sbjct: 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 13/171 (7%)

Query: 23  WYH--NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEE 80
           W +   ++  I E   N         +   +L + P  + +W+YRK ++           
Sbjct: 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA-- 163

Query: 81  LHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN---YEKELELCNYYLELDE 137
                 +EL      +    K+   W  R ++L            ++EL      +    
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217

Query: 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188
           +N   W+Y   + +R   +  +   +S + ++      ++      L  + 
Sbjct: 218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  162 bits (411), Expect = 3e-45
 Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 19/211 (9%)

Query: 24  YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
           + ++ +      +  E  + A  LT + +       ++W++R+ +L  ++  L E     
Sbjct: 96  FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE----- 150

Query: 84  LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
               E+      +  QPK+Y  W  R  +++ +       +ELE     L  D +N+H W
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLRD---PSQELEFIADILNQDAKNYHAW 203

Query: 144 DYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKY 203
            +R++V    K+    EL Y  + ++ +  N S W+ R  ++             ++   
Sbjct: 204 QHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN------DRAVL 256

Query: 204 VNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
             E       +   P ++SAW Y + +L +R
Sbjct: 257 EREVQYTLEMIKLVPHNESAWNYLKGILQDR 287

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 24/178 (13%), Positives = 63/178 (35%), Gaps = 33/178 (18%)

Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELH------------- 82
             Q+   E ++  + ++   P    +W++R+ ++  ++     +EL              
Sbjct: 143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNY 200

Query: 83  -------------ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR---APNYEKEL 126
                        +L D EL+     L    ++   W QR +V+ + +        E+E+
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260

Query: 127 ELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKL 184
           +     ++L   N   W+Y + +     ++    L      ++ +  + S +     +
Sbjct: 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS--HSSPYLIAFLV 316

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 77  AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD 136
            EE   E  +       D  ++        ++       I   P  +    +    +   
Sbjct: 36  KEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQ--IIYS 93

Query: 137 ERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
           ++    +DY R V  R + +  +    + + IE N +NY+ WH+R  LL  L        
Sbjct: 94  DKFRDVYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSL-------- 144

Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237
              Q     E + + + +  +PK+   W ++R L+     P
Sbjct: 145 ---QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
            L +  + SI   + F     +   DL        ++      L  L   + L L  C++
Sbjct: 153 WLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL---KYLNLGMCNI 208

Query: 424 SSLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSL 475
             +     L  LE L++S N    I    F      + L + +  +S +    F  L SL
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
             L+++HN +  +   +F      V++ L  NP
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 29/161 (18%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            L    +  I  +  F        ++L +N LT   +    +L+ L     L L +  + 
Sbjct: 105 QLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL---RELWLRNNPIE 160

Query: 425 SLH--VFPHLPSLESLDVSHN------APNIILCVYF------QSLKLTHCSLSSLHVFP 470
           S+    F  +PSL  LD+         +        F      + L L  C++  +    
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGA-----FEGLFNLKYLNLGMCNIKDMPNLT 215

Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
            L  LE L++S N    I    F    +  ++ +  + VS 
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 28/123 (22%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
           NL    +  + ++      +++++S N            L+ L   + L + +  +S + 
Sbjct: 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---KKLWVMNSQVSLIE 258

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
              F  L SL  L+++HN                  +LSSL   +F  L  L  L + HN
Sbjct: 259 RNAFDGLASLVELNLAHN------------------NLSSLPHDLFTPLRYLVELHLHHN 300

Query: 484 AID 486
             +
Sbjct: 301 PWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 43/136 (31%)

Query: 384 HCFAHCKQVDLSNNPLT----------------NNCLRHLTP-----LVACESLKLTHCS 422
            C     +V  +   L+                 N ++ +       L   E L+L   S
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESL 478
           +  +    F  L SL +L++  N                   L+ +    F +L  L  L
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDN------------------WLTVIPSGAFEYLSKLREL 152

Query: 479 DVSHNAIDHIEDSVFA 494
            + +N I+ I    F 
Sbjct: 153 WLRNNPIESIPSYAFN 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
            L  L + +I   + F    +   +++S+ P  +    +    +   SL +THC+L+++ 
Sbjct: 182 RLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLES 477
                HL  L  L++S+N  + I           Q ++L    L+ +    F  L  L  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 478 LDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
           L+VS N +  +E+SVF        +IL  NP
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            L+   ++++     F +      + L +N L          L+ L     L ++   + 
Sbjct: 62  ELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL---TKLDISENKIV 117

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSL--HVFPHLPS 474
            L   +F  L +L+SL+V  N    I    F      + L L  C+L+S+      HL  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
           L  L + H  I+ I D  F +      + ++  P
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
           N+I  L       ++++      K +++ +N L          L  L   E L L  C+L
Sbjct: 114 NKIVILLDYMFQDLYNL------KSLEVGDNDLVYISHRAFSGLNSL---EQLTLEKCNL 164

Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSL-KLTHCSLSS---LHVFP----HLP 473
           +S+      HL  L  L + H   N I    F+ L +L    +S    L        +  
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
           +L SL ++H  +  +             + L+ NP+S
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 384 HCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESL 438
            C A  + V                          L L    + +L+   F   P LE L
Sbjct: 8   ECSAQDRAVLCHRKRFVAVPEGIPTETR------LLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 439 DVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
           +++ N  + +    F      ++L L    L  +   VF  L +L  LD+S N I  + D
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121

Query: 491 SVFAKYEACVQVILTGNPVS 510
            +F        + +  N + 
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 32/125 (25%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +++   LT++ +     H      ++LS NP++    + L  L  L   + ++L    L+
Sbjct: 230 SITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL---QEIQLVGGQLA 285

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
            +    F  L  L  L+VS N                   L++L   VF  + +LE+L +
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQ------------------LTTLEESVFHSVGNLETLIL 327

Query: 481 SHNAI 485
             N +
Sbjct: 328 DSNPL 332

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
            L +  + SI   + F     +   DL        ++      L+ L     L L  C+L
Sbjct: 142 WLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL---RYLNLAMCNL 197

Query: 424 SSLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSL 475
             +     L  L+ LD+S N  + I    F      Q L +    +  +    F +L SL
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
             ++++HN +  +   +F       ++ L  NP
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            LS   + +I  +  F        ++L +N LT   N    +L+ L   + L L +  + 
Sbjct: 94  QLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL---KELWLRNNPIE 149

Query: 425 SLH--VFPHLPSLESLDVSHN------APNIILCVYF------QSLKLTHCSLSSLHVFP 470
           S+    F  +PSL  LD+         +        F      + L L  C+L  +    
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGA-----FEGLSNLRYLNLAMCNLREIPNLT 204

Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
            L  L+ LD+S N +  I    F       ++ +  +
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
           NL+   L  I ++       ++DLS N L+       + L  L   + L +    +  + 
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---QKLWMIQSQIQVIE 247

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
              F +L SL  ++++HN                  +L+ L   +F  L  LE + + HN
Sbjct: 248 RNAFDNLQSLVEINLAHN------------------NLTLLPHDLFTPLHHLERIHLHHN 289

Query: 484 AID 486
             +
Sbjct: 290 PWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 384 HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESL 438
            C     +V      L    +    +         L L    +  +    F HL  LE L
Sbjct: 40  SCSNQFSKVICVRKNLREVPDGISTNTR------LLNLHENQIQIIKVNSFKHLRHLEIL 93

Query: 439 DVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
            +S N    I    F       +L+L    L+++    F +L  L+ L + +N I+ I  
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 491 SVFA 494
             F 
Sbjct: 154 YAFN 157

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 37/175 (21%)

Query: 367 NQIT--------NLSSL---------QLTSIHHMHCFAHCKQ---VDLSNNPLTN---NC 403
           N +          L+ L         QL S+     F    +   + L    L       
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 404 LRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---- 457
            R L  L   + L L   +L +L    F  L +L  L +  N  + +    F+ L     
Sbjct: 125 FRGLAAL---QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 458 --LTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
             L    ++ +H   F  L  L +L +  N +  +     A   A   + L  NP
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 32/126 (25%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
            L    L ++     F     +    L  N +++      R L  L   + L L    ++
Sbjct: 135 YLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL---DRLLLHQNRVA 190

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
            +H   F  L  L +L +  N                  +LS+L       L +L+ L +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFAN------------------NLSALPTEALAPLRALQYLRL 232

Query: 481 SHNAID 486
           + N   
Sbjct: 233 NDNPWV 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           +     +T+I  +    +   ++L +N +T+  L  L  L     L+L+   L ++    
Sbjct: 47  SAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIA 104

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
            L S+++LD++         +      Q L L    ++++     L +L+ L + +  + 
Sbjct: 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS 164

Query: 487 HIE 489
            + 
Sbjct: 165 DLT 167

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           NQIT+L+ L  LT I          +++LS NPL N  +  +  L + ++L LT   ++ 
Sbjct: 73  NQITDLAPLKNLTKI---------TELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           +     L +L+ L +  N       +      Q L + +  +S L    +L  L +L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 482 HNAIDHIED 490
            N I  I  
Sbjct: 182 DNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
             I  +              A+  ++    + +T+        L    +L      ++++
Sbjct: 7   TAINVIFPDP--------ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI 56

Query: 427 HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
               +L +L  L++  N       +        L+L+   L ++     L S+++LD++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 483 NAIDHIED 490
             I  +  
Sbjct: 117 TQITDVTP 124

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 22/117 (18%)

Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
                +    +     L     +     +++       L  + +L               
Sbjct: 4   TQPTAINV--IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT---------- 51

Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
                    ++++    +L +L  L++  N I  +  +         ++ L+GNP+ 
Sbjct: 52  --------GVTTIEGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLK 98

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
           N+  N  +L L  I         + ++ S N L    N     L  L     L LT C +
Sbjct: 14  NKTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINL---TFLDLTRCQI 69

Query: 424 SSLH--VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP 473
             +H   F     L++L ++ N     A   +      + L      +SS+      +  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 474 SLESLDVSHNAIDHIEDSVFA 494
           +LESL +  N I  I+     
Sbjct: 130 TLESLYLGSNHISSIKLPKGF 150

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 22/141 (15%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
           N +  + +   + + ++        +DL+   +     +  +    L   ++L LT   L
Sbjct: 43  NVLPTIQNTTFSRLINL------TFLDLTRCQIYWIHEDTFQSQHRL---DTLVLTANPL 93

Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSL--HVFPHLP 473
             +         +L+ L       + I  +   + K      L    +SS+         
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 474 SLESLDVSHNAIDHIEDSVFA 494
            L+ LD  +NAI ++     +
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 51/222 (22%)

Query: 294 LSLSCPYRNYISV---ALLTSITLLQHLH----PGSSDSNEIILKRFDLLKTLDPLRLNY 346
           L LS    N          ++   L HL         +     L+  + L+ LD L  + 
Sbjct: 306 LVLS---ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHD- 360

Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSL-----QLTSIHHMHCFAHCKQ---VDLSNNP 398
                    IET    N +   +++L SL     +  S+     F  C Q   +DL+   
Sbjct: 361 --------DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTR 411

Query: 399 LTN----NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVY 452
           L      +  ++L  L   + L L+H  L      +F  LP+L+ L++  N         
Sbjct: 412 LKVKDAQSPFQNLHLL---KVLNLSHSLLDISSEQLFDGLPALQHLNLQGN--------- 459

Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFA 494
                    ++   +    L  LE L +S   +  I+   F 
Sbjct: 460 ----HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 16/131 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRHLTPLVACESLK---LTHCSLS 424
           NLS   L        F     +   +L  N      ++    L     L+   L+ C LS
Sbjct: 431 NLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS-------LHVFPHLPSL 475
           S+    F  L  +  +D+SHN            LK  + +L+S         + P L   
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ 549

Query: 476 ESLDVSHNAID 486
            ++++  N +D
Sbjct: 550 RTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 19/137 (13%)

Query: 384 HCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESL 438
                 K  +  N  L                   L+ +   L ++    F  L +L  L
Sbjct: 9   IEKEVNKTYNCENLGLNEIPGTLPNSTE------CLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 439 DVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
           D++      I    FQS        LT   L  +         +L+ L      I  I+ 
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 491 SVFAKYEACVQVILTGN 507
                 +    + L  N
Sbjct: 123 IPLHNQKTLESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 24/145 (16%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNN----PLTNNCLRHLTPLVACESLKLTHCSL 423
            LS+ +  ++      ++   +    +  N     L   CL +L  L     L L+H  +
Sbjct: 307 VLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENL---RELDLSHDDI 362

Query: 424 SSLHV----FPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH---VFP 470
            +         +L  L+SL++S+N P  +    F      + L L    L        F 
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 471 HLPSLESLDVSHNAIDHIEDSVFAK 495
           +L  L+ L++SH+ +D   + +F  
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACE--SLKLTHCSLSS 425
            L S  ++SI  +         K +D  NN +       ++ L      SL L    ++ 
Sbjct: 135 YLGSNHISSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 426 LHVFP-HLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL--HVFPHLP- 473
           +          +SL+       +++                        +   VF  L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 474 -SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
            S+ES+++  +   +I  + F  +    ++ LT  
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
             ++  + S+  +    +  ++ L+ N LT+  ++ LT L     L L    +  L    
Sbjct: 49  IANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSSLK 106

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
            L  L+SL + HN       ++     +SL L +  ++ + V   L  L++L +  N I 
Sbjct: 107 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 166

Query: 487 HIED 490
            I  
Sbjct: 167 DIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query: 367 NQITNLSSLQ-LTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           N+I +LSSL+ L  +         K + L +N +++  +  L  L   ESL L +  ++ 
Sbjct: 97  NKIKDLSSLKDLKKL---------KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD 145

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           + V   L  L++L +  N       +      Q+L L+   +S L     L +L+ L++ 
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205

Query: 482 HNAIDHIEDSVF 493
                +   +  
Sbjct: 206 SQECLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 13/121 (10%), Positives = 37/121 (30%), Gaps = 22/121 (18%)

Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL 449
            +    + P+    +             L   S++       L S++ +  +++      
Sbjct: 2   GETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS------ 53

Query: 450 CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509
                        + S+    +LP++  L ++ N +  I+       +    + L  N +
Sbjct: 54  ------------DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99

Query: 510 S 510
            
Sbjct: 100 K 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 20/139 (14%)

Query: 367 NQITNLSSLQ-LTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLS 424
           N+IT+++ L  LT +           + L +N +++   L  LT L   ++L L+   +S
Sbjct: 141 NKITDITVLSRLTKL---------DTLSLEDNQISDIVPLAGLTKL---QNLYLSKNHIS 188

Query: 425 SLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLHVFPHLPSLESL 478
            L     L +L+ L++           +        ++K T  SL +  +       E  
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

Query: 479 DVSHNAIDHIEDSVFAKYE 497
           +V  +  +   +  F  Y+
Sbjct: 249 NVKWHLPEFTNEVSFIFYQ 267

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
           ++S+  L  I     F        + LS+N LT+  L  +  L       +++  LS+L 
Sbjct: 147 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTL- 201

Query: 428 VFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
                 ++E LD SHN+ N++   + V    LKL H +L+      + P L  +D+S+N 
Sbjct: 202 --AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259

Query: 485 IDHIEDSVFAK 495
           ++ I    F K
Sbjct: 260 LEKIMYHPFVK 270

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 19/133 (14%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
           N+S   L+++         +++D S+N +          LT       LKL H +L+   
Sbjct: 192 NVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELT------ILKLQHNNLTDTA 242

Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH-VFPHLPSLESLDV 480
              + P L  +D+S+N    I+   F  ++      +++  L +L+     +P+L+ LD+
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302

Query: 481 SHNAIDHIEDSVF 493
           SHN + H+E +  
Sbjct: 303 SHNHLLHVERNQP 315

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 14/150 (9%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HV 428
           + S   +  +           + L +N LT+     L        + L++  L  +  H 
Sbjct: 211 DASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 429 FPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSH 482
           F  +  LE L +S+N               + L L+H  L  +    P    LE+L + H
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327

Query: 483 NAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
           N+I  ++ S     +    + L+ N    +
Sbjct: 328 NSIVTLKLSTHHTLK---NLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 29/148 (19%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
             I   +         +    + K V   N+ +       L     +   E L L    +
Sbjct: 26  VHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQV---ELLNLNDLQI 81

Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLD 479
             +    F +  +++ L +  N                  ++  L  HVF ++P L  L 
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFN------------------AIRYLPPHVFQNVPLLTVLV 123

Query: 480 VSHNAIDHIEDSVFAKYEACVQVILTGN 507
           +  N +  +   +F        + ++ N
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 14/191 (7%)

Query: 309 LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQ 368
           L    L+        +         + L  +          ++    I  F         
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVS 288

Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV 428
             +L+ + +  +  +      + + +    L       L  L   +SL LT    S    
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGSISFK 345

Query: 429 FPHLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL-HVFPHLPSLESLD 479
              LPSL  LD+S NA +   C  +        + L L+      +   F  L  L+ LD
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 480 VSHNAIDHIED 490
             H+ +  + +
Sbjct: 406 FQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL- 426
           +     L  +     F   ++   +D+S      +       L +  +LK+   S     
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 427 --HVFPHLPSLESLDVSHNA-----PNII-LCVYFQSLKLTHCSLSSLH--VFPHLPSLE 476
             +VF +  +L  LD+S          +       Q L ++H +L  L    +  L SL 
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
           +LD S N I+  +  +    ++     LT N 
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
                +L+ +      +  K +DLS NPL    +    + + L   + L L+ C + ++ 
Sbjct: 17  QCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSEL---QWLDLSRCEIETIE 72

Query: 428 --VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLPSLES 477
              +  L  L +L ++ N     +P         ++L      L+SL       L +L+ 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 478 LDVSHNAIDHIEDSVF 493
           L+V+HN I   +   +
Sbjct: 133 LNVAHNFIHSCKLPAY 148

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 27/132 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
           +LS  ++ +I     +     +    L+ NP+ +        LT L   E+L      L+
Sbjct: 62  DLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL---ENLVAVETKLA 117

Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
           SL       L +L+ L+V+HN              +  C L +   F +L +L  +D+S+
Sbjct: 118 SLESFPIGQLITLKKLNVAHN-------------FIHSCKLPA--YFSNLTNLVHVDLSY 162

Query: 483 NAIDHIEDSVFA 494
           N I  I  +   
Sbjct: 163 NYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 17/200 (8%)

Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
           L  +  +   L    +  + I  + F  +K  + L L    +S +   I      N    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE-LTLRGNFNSSN---IMKTCLQNLAGL 231

Query: 368 QITNLSSLQLTSIHHMHCFA----------HCKQVDLSNNPLTNNCLRHLTPLVACESLK 417
            +  L   +     ++  F              +  L+     ++ +     L    ++ 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 418 LTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLPS 474
           L   S+  L   P     +SL +          +    LK   LT    S       LPS
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

Query: 475 LESLDVSHNAIDHIEDSVFA 494
           L  LD+S NA+       ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 21/133 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN----NCLRHLTPLVACESLKLTHCSL 423
           ++S            F        + ++ N   +    N   + T L     L L+ C L
Sbjct: 430 DISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---TFLDLSKCQL 485

Query: 424 SSL--HVFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP 473
             +   VF  L  L+ L++SHN       +         +L  +   + +    +     
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 474 SLESLDVSHNAID 486
           SL   ++++N++ 
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 12/165 (7%)

Query: 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCK-- 390
           F  L  L  + L+Y            F++ NP+ N   ++S   +  I     F   K  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QAFQGIKLH 207

Query: 391 QVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILC 450
           ++ L  N  ++N ++        ++L   H     L  F    +LE  + S       + 
Sbjct: 208 ELTLRGNFNSSNIMKT-----CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV- 261

Query: 451 VYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVF 493
                 +LT+ +  S     F  L ++ ++ ++  +I ++ED   
Sbjct: 262 -TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 29/98 (29%)

Query: 401 NNCLRHLTPLVA-CESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSLKL 458
           N C+  +  +   C   KL+        V   +P S +++D+S N               
Sbjct: 5   NPCIEVVPNITYQCMDQKLSK-------VPDDIPSSTKNIDLSFN--------------- 42

Query: 459 THCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFA 494
               L  L  + F +   L+ LD+S   I+ IED  + 
Sbjct: 43  ---PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
                 +S  LTS+      +   +++L +N L +        LT L     L L+   L
Sbjct: 9   GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQL---TKLSLSSNGL 64

Query: 424 SSLHV----FPHLPSLESLDVSHNAPNIILCVYF-----QSLKLTHCSLSSLH---VFPH 471
           S             SL+ LD+S N    +   +      + L   H +L  +    VF  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
           L +L  LD+SH       + +F 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFN 147

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +     L  +     F   +    +D+S+       N     L+ L   E LK+   S  
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 163

Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLP 473
                 +F  L +L  LD+S      +    F      Q L ++H +  SL    +  L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
           SL+ LD S N I   +      + + +  + LT N 
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 29/145 (20%)

Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTN----NCLRHLTPLVACESLKLTH 420
           N +  +SS  L L  + H+         D  ++ L      +    L  L     L ++H
Sbjct: 88  NGVITMSSNFLGLEQLEHL---------DFQHSNLKQMSEFSVFLSLRNL---IYLDISH 135

Query: 421 CSLSSL--HVFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLH--VF 469
                    +F  L SLE L ++ N+                  L L+ C L  L    F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 470 PHLPSLESLDVSHNAIDHIEDSVFA 494
             L SL+ L++SHN    ++   + 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 43/165 (26%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------------NNCLR 405
           N++ +L       +  +       ++ LS+N L+                      N + 
Sbjct: 38  NKLQSLPHGVFDKLTQL------TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 406 HLTP----LVACESLKLTHCSLSSLH---VFPHLPSLESLDVSHNAPNIILCVYF----- 453
            ++     L   E L   H +L  +    VF  L +L  LD+SH    +     F     
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 454 -QSLKLTHCSLSSL---HVFPHLPSLESLDVSHNAIDHIEDSVFA 494
            + LK+   S        +F  L +L  LD+S   ++ +  + F 
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 22/134 (16%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
           ++S        +   F      + + ++ N        +    L  L     L L+ C L
Sbjct: 132 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---TFLDLSQCQL 187

Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLP 473
             L    F  L SL+ L++SHN    +    ++ L        +   + +       H P
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 474 -SLESLDVSHNAID 486
            SL  L+++ N   
Sbjct: 248 SSLAFLNLTQNDFA 261

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLS 424
           NQI ++S L  LTS+H+              N +T+   + ++T L    SLK+ +  ++
Sbjct: 187 NQIEDISPLASLTSLHYF---------TAYVNQITDITPVANMTRL---NSLKIGNNKIT 234

Query: 425 SLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480
            L    +L  L  L++  N       +      + L +    +S + V  +L  L SL +
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294

Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
           ++N + + +  V         + L+ N ++
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
                 +  I      A   +  L    +T+  +     L +   L +    ++S+    
Sbjct: 6   ATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQGIE 63

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
           +L +LE L+++ N       +   V   +L +    ++ +    +L +L  L ++ + I 
Sbjct: 64  YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123

Query: 487 HIE 489
            I 
Sbjct: 124 DIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           NL+  Q+T I  +        + +  N +T+  +  L  L     L L   ++S +    
Sbjct: 72  NLNGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLA 129

Query: 431 HLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
           +L  + SL++  N        +        L +T   +  +    +L  L SL +++N I
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI 189

Query: 486 DHIE 489
           + I 
Sbjct: 190 EDIS 193

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 18/126 (14%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           N+IT+LS L  L+ +           +++  N +++  +  +  L   + L +    +S 
Sbjct: 231 NKITDLSPLANLSQL---------TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 426 LHVFPHLPSLESLDVSHN------APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
           + V  +L  L SL +++N         I       +L L+   ++ +     L  ++S D
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSAD 339

Query: 480 VSHNAI 485
            ++  I
Sbjct: 340 FANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 39/164 (23%)

Query: 365 RANQITNLSSL-QLTS----------IHHMHCFAHCKQV---DLSNNPLT---------- 400
             N+IT++S+L  LT+          I  +   A+  ++   +L  N             
Sbjct: 96  GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 401 --------NNCLRHLTPLVACESLK---LTHCSLSSLHVFPHLPSLESLDVSHNA----P 445
                    + ++ +TP+     L    L +  +  +     L SL       N      
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215

Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
            +       SLK+ +  ++ L    +L  L  L++  N I  I 
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----P 445
             +     P+    +     L       L   S++ +     L S+  L V+        
Sbjct: 3   ATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
            I      + L L    ++ +    +L  L +L +  N I  I 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
           ++S+  L  I     F        + LS+N LT+  L  +  L       +++  LS+L 
Sbjct: 153 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTL- 207

Query: 428 VFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
                 ++E LD SHN+ N++   + V    LKL H +L+      + P L  +D+S+N 
Sbjct: 208 --AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265

Query: 485 IDHIEDSVFAK 495
           ++ I    F K
Sbjct: 266 LEKIMYHPFVK 276

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 19/133 (14%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
           N+S   L+++         +++D S+N +          LT       LKL H +L+   
Sbjct: 198 NVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELT------ILKLQHNNLTDTA 248

Query: 428 VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH-VFPHLPSLESLDV 480
              + P L  +D+S+N    I+   F      + L +++  L +L+     +P+L+ LD+
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

Query: 481 SHNAIDHIEDSVF 493
           SHN + H+E +  
Sbjct: 309 SHNHLLHVERNQP 321

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--V 428
           + S   +  +           + L +N LT+     L        + L++  L  +    
Sbjct: 217 DASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273

Query: 429 FPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSH 482
           F  +  LE L +S+N               + L L+H  L  +    P    LE+L + H
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333

Query: 483 NAIDHIEDSVF 493
           N+I  ++ S  
Sbjct: 334 NSIVTLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 394 LSNNPLTNNCLRHLT-----PLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPN 446
             +  +               L   + +   + ++  L   +      +E L+++     
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 447 IILCVYF------QSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEA 498
            I    F      Q L +   ++  L  HVF ++P L  L +  N +  +   +F     
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 499 CVQVILTGN 507
              + ++ N
Sbjct: 149 LTTLSMSNN 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
           +++ + S L+LT +       +   ++L++N L           + L    SL +   ++
Sbjct: 6   HEVADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQL---TSLDVGFNTI 61

Query: 424 SSLH--VFPHLPSLESLDVSHN-----APNII-LCVYFQSLKLTHCSLSSLH--VFPHLP 473
           S L   +   LP L+ L++ HN     +      C     L L   S+  +    F    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 474 SLESLDVSHNAIDHIEDSVFA 494
           +L +LD+SHN +   +     
Sbjct: 122 NLITLDLSHNGLSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 38/170 (22%)

Query: 360 IQTNPRANQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTN-----NC 403
           I       +   L ++            +   + FA       + L    L N     + 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 404 LRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHN--------------APNI 447
            + L  L     L L++ +++++   +   L  LE LD+ HN                 +
Sbjct: 476 FQPLRNL---TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 448 ILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
               +   L L       +   VF  L  L+ +D+  N ++ +  SVF  
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 385 CFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLD 439
           C    +  D S+  LT   ++   ++T       L LTH  L  L    F     L SLD
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 440 VSHNA-----PNIIL-CVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDS 491
           V  N      P +       + L L H  LS L    F    +L  L +  N+I  I+++
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 492 VFA 494
            F 
Sbjct: 116 PFV 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 371 NLSSLQLTSIHHM-HCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
            L  + L ++      F   +    +DLSNN + N     L  L   E L L H +L+ L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 427 H----------VFPHLPSLESLDVSHNA-----PNIIL-CVYFQSLKLTHCSLSSLH--V 468
                          L  L  L++  N        +       + + L   +L++L   V
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
           F +  SL+SL++  N I  +E  VF      +  + +  NP
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 18/159 (11%)

Query: 367 NQITNLSSL---QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSL 423
           N I +L S     L ++ +++      +  +S   L          L   E L +    +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYF----------QSLKLTHCSLSSLH--VF 469
             +  ++F  L +L+ L +S++  ++                  L LT   +S +    F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 470 PHLPSLESLDVSHNAI-DHIEDSVFAKYEACVQVILTGN 507
             L  LE LD+  N I   +    +   E   ++ L+ N
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 34/207 (16%)

Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQIT--NL 372
           ++   PG           F  +  L  L LN  +   S   +   +        I   +L
Sbjct: 183 IKEFSPGC----------FHAIGRLFGLFLNNVQLGPS---LTEKLCLELANTSIRNLSL 229

Query: 373 SSLQLTSIHHMHCFAHCKQV-----DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL- 426
           S+ QL++  +   F   K       DLS N L          L   E   L + ++  L 
Sbjct: 230 SNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 427 -HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
            H    L ++  L++  +         F    ++  SL  +    F  L  LE L++  N
Sbjct: 289 SHSLHGLFNVRYLNLKRS---------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 484 AIDHIEDSVFAKYEACVQVILTGNPVS 510
            I  I+ ++F        + L+ +  S
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
           NL+  QL  +     F    Q+   D+  N ++       + L  L   + L L H  LS
Sbjct: 31  NLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPML---KVLNLQHNELS 86

Query: 425 SL--HVFPHLPSLESLDVSHNA----PNIILC--VYFQSLKLTHCSLSSL--HVFPHLPS 474
            L    F    +L  L +  N+     N          +L L+H  LSS        L +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 475 LESLDVSHNAIDHIEDSVFA 494
           L+ L +S+N I  ++     
Sbjct: 147 LQELLLSNNKIQALKSEELD 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 22/143 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
           ++    ++ +              ++L +N L+          T L     L L   S+ 
Sbjct: 55  DVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL---TELHLMSNSIQ 110

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH----VFPHL 472
            +    F    +L +LD+SHN  +         L+      L++  + +L          
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
            SL+ L++S N I       F  
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 25/139 (17%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------NNCLRHLTPLVACESLKL 418
           N I N++   L  +  +      + +DL +N L            +  L  L     L L
Sbjct: 490 NNIANINDDMLEGLEKL------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 419 THCSLSSLH--VFPHLPSLESLDVSHNA-----PNIIL-CVYFQSLKLTHCSLSSL---H 467
                  +   VF  L  L+ +D+  N       ++    V  +SL L    ++S+    
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 468 VFPHLPSLESLDVSHNAID 486
             P   +L  LD+  N  D
Sbjct: 604 FGPAFRNLTELDMRFNPFD 622

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 39/234 (16%), Positives = 66/234 (28%), Gaps = 32/234 (13%)

Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
             SL+        +A L    L+        +  +      + L  L             
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 353 KYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP-------------- 398
              I              +L S+ +  +         + ++L N                
Sbjct: 271 LDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 399 --LTNNCLRHLTPLVACESLK---LTHCSLSSL----HVFPHLPSLESLDVSHNA----- 444
              T+N   +    V   SL+   L+   LS             SL+ LD+S N      
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 445 PNIILCVYFQSLKLTHCSLSSL---HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
            N +     + L   H +L  +    VF  L +L  LD+SH       + +F  
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN----NCLRHLTPLVACESLKLTHCSL 423
           +LS   + ++     F   +Q   +D  ++ L      +    L  L     L ++H   
Sbjct: 379 DLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL---IYLDISHTHT 433

Query: 424 SSL--HVFPHLPSLESLDVSHNA-PNIILCVYF------QSLKLTHCSLSSLH--VFPHL 472
                 +F  L SLE L ++ N+     L   F        L L+ C L  L    F  L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
            SL+ L+++ N +  + D +F +  +  ++ L  NP
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 51/268 (19%), Positives = 83/268 (30%), Gaps = 42/268 (15%)

Query: 251 TFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLT 310
                + L  L + +  +     L     L+     F  +  + S S        V   +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYL--DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 311 SITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQIT 370
                QHL      + +        LK+L  L     K                    + 
Sbjct: 302 YNFGWQHLE---LVNCKFGQFPTLKLKSLKRLTFTSNK-----------GGNAFSEVDLP 347

Query: 371 NLSSLQLT--SIHHMHCFAHC-------KQVDLSNNPLTN--NCLRHLTPLVACESLKLT 419
           +L  L L+   +    C +         K +DLS N +    +    L  L   E L   
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL---EHLDFQ 404

Query: 420 HCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYF--QSLKLTHCSLSSL---H 467
           H +L  +    VF  L +L  LD+SH       N I       + LK+   S        
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           +F  L +L  LD+S   ++ +  + F  
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 27/132 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
           +LS  ++ +I     +        + L+ NP+ +        L+ L   + L     +L+
Sbjct: 58  DLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVETNLA 113

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
           SL      HL +L+ L+V+HN              +   S      F +L +LE LD+S 
Sbjct: 114 SLENFPIGHLKTLKELNVAHN-------------LIQ--SFKLPEYFSNLTNLEHLDLSS 158

Query: 483 NAIDHIEDSVFA 494
           N I  I  +   
Sbjct: 159 NKIQSIYCTDLR 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 29/144 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
               L    I   +     K +DLS NPL    +        L   + L L+ C + ++ 
Sbjct: 13  QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPEL---QVLDLSRCEIQTIE 68

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
              +  L  L +L ++ N                   + SL    F  L SL+ L     
Sbjct: 69  DGAYQSLSHLSTLILTGN------------------PIQSLALGAFSGLSSLQKLVAVET 110

Query: 484 AIDHIEDSVFAKYEACVQVILTGN 507
            +  +E+      +   ++ +  N
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 20/133 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +     L  +     F   + +   D+S+       N     L+ L   E LK+   S  
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 458

Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLP 473
                 +F  L +L  LD+S      +    F SL       +    L S+   +F  L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 474 SLESLDVSHNAID 486
           SL+ + +  N  D
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            L+   + S+     F+       +      L    N  + HL  L   + L + H  + 
Sbjct: 82  ILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---KELNVAHNLIQ 137

Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLE-SLDV 480
           S      F +L +LE LD+S N             K+     + L V   +P L  SLD+
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSN-------------KIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 481 SHNAIDHIEDSVFAK 495
           S N ++ I+   F +
Sbjct: 185 SLNPMNFIQPGAFKE 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 31/119 (26%)

Query: 384 HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESL 438
                               +N            +L L+   L  L  + F   P L+ L
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPFSTK------NLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 439 DVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           D+S                     + ++    +  L  L +L ++ N I  +    F+ 
Sbjct: 58  DLSRC------------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 14/127 (11%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHV 428
            +S+ QL  +  +   +  K +D+ NN L    +    L        +   +  L  L  
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE------FIAAGNNQLEELPE 190

Query: 429 FPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
             +LP L ++   +N+    P++ L +  +S+   +  L  L    +LP L ++   +N 
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSL--ESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 485 IDHIEDS 491
           +  + D 
Sbjct: 249 LKTLPDL 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 24/141 (17%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
            L++L L+S+       H + +  S N LT               NN L+ L+ L    E
Sbjct: 77  ELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFP 470
            L +++  L  L    +   L+ +DV +N+    P++   +  + +   +  L  L    
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPELQ 192

Query: 471 HLPSLESLDVSHNAIDHIEDS 491
           +LP L ++   +N++  + D 
Sbjct: 193 NLPFLTAIYADNNSLKKLPDL 213

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 19/134 (14%)

Query: 367 NQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLT 419
           +   +L S+      L  +  +        +   NN L    +    L      E+L + 
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL------EALNVR 265

Query: 420 HCSLSSLHVFPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSLSSLHVFPHLPSLES 477
              L+ L       SL  LDVS N  + +  L      L  +   + SL      PSLE 
Sbjct: 266 DNYLTDLP--ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEE 321

Query: 478 LDVSHNAIDHIEDS 491
           L+VS+N +  +   
Sbjct: 322 LNVSNNKLIELPAL 335

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHV 428
           N+    LT +           +D+S N  +       +L        L  +   + SL  
Sbjct: 263 NVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSELPPNLY------YLNASSNEIRSL-- 312

Query: 429 FPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
               PSLE L+VS+N    +  L    + L  +   L+ +       +L+ L V +N + 
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLR 370

Query: 487 HIEDSV 492
              D  
Sbjct: 371 EFPDIP 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 28/152 (18%)

Query: 367 NQITNL--SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLS 424
           + +T +   +  + S    +  A  +    +           ++ L  C   +     L+
Sbjct: 21  SNLTEMPVEAENVKSKTEYY-NAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 425 --SLHVFPH-LPSLESLDVSHNA----PNII------------------LCVYFQSLKLT 459
              L   P   P LESL  S N+    P +                   L    + L ++
Sbjct: 80  NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

Query: 460 HCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
           +  L  L    +   L+ +DV +N++  + D 
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 171

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP-------LTNNCLRHLTPLVA-CESLKL 418
           N  + LS L   ++++++  +  +   L + P       ++NN L  L  L    E L  
Sbjct: 287 NIFSGLSEL-PPNLYYLNA-SSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA 344

Query: 419 THCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
           +   L+ +       +L+ L V +N     P+I      +S++    +     V     +
Sbjct: 345 SFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIP-----ESVEDLRMNSHLAEVPELPQN 397

Query: 475 LESLDVSHNAIDHI 488
           L+ L V  N +   
Sbjct: 398 LKQLHVETNPLREF 411

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 364 PRANQITNLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLKLTH 420
            +   +   +    T I     FA     +++++  + L +   + L  +     L L  
Sbjct: 149 TKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 421 CSLSSL--HVFPHLPSLESLDVSHN--------------APNIILCVYFQSLKLTHCSLS 464
                L         S+E L++                   ++I    F+++K+T  SL 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 465 SL-HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
            +  +   +  L  L+ S N +  + D +F +  +  ++ L  NP
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 43/132 (32%)

Query: 366 ANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
            N I   SS  L SI         K +DLSNN +T                      +S+
Sbjct: 32  RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRIT---------------------YISN 69

Query: 426 LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
                   +L++L ++ N                   ++++    F  L SLE LD+S+N
Sbjct: 70  -SDLQRCVNLQALVLTSN------------------GINTIEEDSFSSLGSLEHLDLSYN 110

Query: 484 AIDHIEDSVFAK 495
            + ++  S F  
Sbjct: 111 YLSNLSSSWFKP 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           N I+++S+L  LTS+         +Q+   N       L +LT L   E L ++   +S 
Sbjct: 144 NTISDISALSGLTSL---------QQLSFGNQVTDLKPLANLTTL---ERLDISSNKVSD 191

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           + V   L +LESL  ++N       + +      L L    L  +     L +L  LD++
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251

Query: 482 HNAIDHIED 490
           +N I ++  
Sbjct: 252 NNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 367 NQITNLSSL--------------QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412
           N+++++S L              Q++ I  +    +  ++ L+ N L +  +  L  L  
Sbjct: 187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 244

Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHV 468
              L L +  +S+L     L  L  L +  N       +       +L+L    L  +  
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 304

Query: 469 FPHLPSLESLDVSHNAIDHIE 489
             +L +L  L +  N I  I 
Sbjct: 305 ISNLKNLTYLTLYFNNISDIS 325

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           NQ+ ++ +L  LT++           +DL+NN ++N  L  L+ L     LKL    +S+
Sbjct: 231 NQLKDIGTLASLTNL---------TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN 279

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           +     L +L +L+++ N       I        L L   ++S +     L  L+ L   
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339

Query: 482 HNAIDHIE 489
           +N +  + 
Sbjct: 340 NNKVSDVS 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 16/134 (11%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           NQI+N+S L  LT++           ++L+ N L +  +  ++ L     L L   ++S 
Sbjct: 275 NQISNISPLAGLTAL---------TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           +     L  L+ L   +N      ++        L   H  +S L    +L  +  L ++
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383

Query: 482 HNAIDHIEDSVFAK 495
             A  +   +  A 
Sbjct: 384 DQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
             I  + +            A   +  L    +T+      T L    +L+     + S+
Sbjct: 12  TPINQIFTDT--------ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSI 61

Query: 427 HVFPHLPSLESLDVSHN----APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
               +L +L  ++ S+N       +        + + +  ++ +    +L +L  L + +
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121

Query: 483 NAIDHIE 489
           N I  I+
Sbjct: 122 NQITDID 128

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 18/134 (13%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           N I+++S +  LT +         +++   NN +++  +  L  L     L   H  +S 
Sbjct: 319 NNISDISPVSSLTKL---------QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 426 LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSL--SSLHVFP----HLPSLESLD 479
           L    +L  +  L ++  A       Y  ++ + +     +   + P       S    D
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 480 VSHNAIDHIEDSVF 493
           ++ N   +  +  +
Sbjct: 428 ITWNLPSYTNEVSY 441

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 20/96 (20%)

Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
             + P+    +   T L       L   +++       L  + +L               
Sbjct: 9   TQDTPINQ--IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL---------- 56

Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
                    + S+    +L +L  ++ S+N +  I 
Sbjct: 57  --------GIKSIDGVEYLNNLTQINFSNNQLTDIT 84

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLSSLHVF 429
            L+  +LT I  +    +   + L  N + + + L+ L  L   +SL L H  +S ++  
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKL---KSLSLEHNGISDINGL 130

Query: 430 PHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
            HLP LESL + +N       +       +L L    +S +     L  L++L +S N I
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190

Query: 486 DHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV 522
             +     A  +    + L         +     LVV
Sbjct: 191 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 16/128 (12%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLSS 425
             I  + S           FA   + +L    +T+      L  +   + +   +  + S
Sbjct: 12  TPIKQIFSDD--------AFAETIKDNLKKKSVTDAVTQNELNSI---DQIIANNSDIKS 60

Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           +    +LP++  L ++ N       +        L L    +  L     L  L+SL + 
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 482 HNAIDHIE 489
           HN I  I 
Sbjct: 121 HNGISDIN 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 22/117 (18%)

Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
               P+    +             L   S++       L S++ +  +++          
Sbjct: 9   TVPTPIKQ--IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---------- 56

Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
                    + S+    +LP++  L ++ N +  I+    A  +    + L  N V 
Sbjct: 57  --------DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 309 LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRA-N 367
           L  + + + +     +   +       L+ L  L +  ++ +     ++ ++       N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA----YLDYYLDDIIDLFN 279

Query: 368 QITNLSSLQLT--SIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS 422
            +TN+SS  L   +I  +  F++    + ++L N          L  L   + L  T   
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL---KRLTFTSNK 336

Query: 423 LSSLHVFPHLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL-HVFPHLP 473
             +      LPSLE LD+S N  +   C           + L L+   + ++   F  L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 474 SLESLDVSHNAIDHIEDS 491
            LE LD  H+ +  + + 
Sbjct: 397 QLEHLDFQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +     L  +     F   +    +D+S+       N     L+ L   E LK+   S  
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 458

Query: 425 SL---HVFPHLPSLESLDVSHNA-----PNII-LCVYFQSLKLTHCSLSSLH--VFPHLP 473
                 +F  L +L  LD+S        P         Q L ++H +  SL    +  L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
           SL+ LD S N I   +      + + +  + LT N 
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 28/217 (12%)

Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSN-------EIILKRFDLLKTLDPLRLNY 346
           L LS    N I     T + +L  +   +   +        I    F  ++ L  L L  
Sbjct: 154 LDLS---SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRN 209

Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHM-----HCFAHCKQVDLSNNPLT- 400
             DS +   +           ++  L   +  +  ++             + +    L  
Sbjct: 210 NFDSLN---VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 401 -----NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII---LCVY 452
                ++ +     L    S  L   ++  +  F +    + L++ +             
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
            + L  T     +      LPSLE LD+S N +    
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 29/146 (19%)

Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTN----NCLRHLTPLVACESLKLTH 420
           N +  +SS  L L  + H         +D  ++ L      +    L  L     L ++H
Sbjct: 383 NGVITMSSNFLGLEQLEH---------LDFQHSNLKQMSEFSVFLSLRNL---IYLDISH 430

Query: 421 CSLSSL--HVFPHLPSLESLDVSHN------APNII-LCVYFQSLKLTHCSLSSLH--VF 469
                    +F  L SLE L ++ N       P+I         L L+ C L  L    F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 470 PHLPSLESLDVSHNAIDHIEDSVFAK 495
             L SL+ L++SHN    ++   +  
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 27/133 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
           +LS  ++ +I     +     +    L+ NP+ +        L+ L   + L     +L+
Sbjct: 58  DLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVETNLA 113

Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
           SL      HL +L+ L+V+HN          QS KL          F +L +LE LD+S 
Sbjct: 114 SLENFPIGHLKTLKELNVAHN--------LIQSFKLPE-------YFSNLTNLEHLDLSS 158

Query: 483 NAIDHIEDSVFAK 495
           N I  I  +    
Sbjct: 159 NKIQSIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSL 426
           ++S        +   F     +    ++ N    N L    T L     L L+ C L  L
Sbjct: 427 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 427 H--VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP-SL 475
               F  L SL+ L++SHN                Q L  +   + +       H P SL
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 476 ESLDVSHNAID 486
             L+++ N   
Sbjct: 546 AFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 403 CLRHLTPLVA-CESLKLTHCSLSSLHVFPHLP-SLESLDVSHN------APNIILCVYFQ 454
           C+  +  +   C  L           +  +LP S ++LD+S N      + +       Q
Sbjct: 3   CVEVVPNITYQCMELNFYK-------IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 455 SLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFA 494
            L L+ C + ++    +  L  L +L ++ N I  +    F+
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 19/131 (14%)

Query: 371 NLSSLQLTSIHHMHCFAHCK--QVDLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSL- 426
           +LS   +  I     F   +  ++ L NN  + N ++  +  L   E  +L      +  
Sbjct: 183 DLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 427 ----HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
                    L  L +L +               L      +  L  F  L ++ S  +  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEF--------RLAYLDYYLDDIIDL--FNCLTNVSSFSLVS 291

Query: 483 NAIDHIEDSVF 493
             I+ ++D  +
Sbjct: 292 VTIERVKDFSY 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 28/130 (21%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
            ++   +T+I          ++ L  N +T      L+ L  L     L L+  S+S++ 
Sbjct: 177 RIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNL---AKLGLSFNSISAVD 232

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNA 484
                + P L  L +++N                   L  +         ++ + + +N 
Sbjct: 233 NGSLANTPHLRELHLNNN------------------KLVKVPGGLADHKYIQVVYLHNNN 274

Query: 485 IDHIEDSVFA 494
           I  I  + F 
Sbjct: 275 ISAIGSNDFC 284

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
            LS  QL  +         +++ +  N +T    +    L  +     ++L    L S  
Sbjct: 106 YLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQM---IVVELGTNPLKSSG 161

Query: 428 V----FPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH--VFPHLPSLESL 478
           +    F  +  L  + ++      I      SL    L    ++ +       L +L  L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 479 DVSHNAIDHIEDSVFA 494
            +S N+I  +++   A
Sbjct: 222 GLSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 27/136 (19%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +L   ++T +              + LS N ++   N  L +   L     L L +  L 
Sbjct: 198 HLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---RELHLNNNKLV 253

Query: 425 SL-HVFPHLPSLESLDVSHN------APNIILCVYFQSL-KLTHCSLS-------SLH-- 467
            +         ++ + + +N      + +     Y       +  SL         +   
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 468 VFPHLPSLESLDVSHN 483
            F  +    ++ + + 
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 34/152 (22%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
            +S  +LT I          ++ L +N +       L   + L     L L H  +  + 
Sbjct: 178 RISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKL---YRLGLGHNQIRMIE 233

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNA 484
                 LP+L  L + +N                   LS +    P L  L+ + +  N 
Sbjct: 234 NGSLSFLPTLRELHLDNN------------------KLSRVPAGLPDLKLLQVVYLHTNN 275

Query: 485 IDHIEDSVFAKYEACVQVI------LTGNPVS 510
           I  +  + F      V+        L  NPV 
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
            +S   L  I   +  +   ++ + +N +          L  +     +++    L +  
Sbjct: 108 YISKNHLVEIP-PNLPSSLVELRIHDNRIRKVPKGVFSGLRNM---NCIEMGGNPLENSG 163

Query: 428 V----FPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH--VFPHLPSLESL 478
                F  L  L  L +S      I     ++L    L H  + ++          L  L
Sbjct: 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 479 DVSHNAIDHIEDSVFA 494
            + HN I  IE+   +
Sbjct: 223 GLGHNQIRMIENGSLS 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 31/118 (26%)

Query: 385 CFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLD 439
           C  H + V  S+  L           T       L L +  +S L    F  L  L +L 
Sbjct: 31  CHCHLRVVQCSDLGLKAVPKEISPDTT------LLDLQNNDISELRKDDFKGLQHLYALV 84

Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           + +N                   +S +H   F  L  L+ L +S N +  I  ++ + 
Sbjct: 85  LVNN------------------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLS- 424
              TN + +  L+++         +++ +    +T++ + +L+ L +   L ++H +   
Sbjct: 76  IHATNYNPISGLSNL---------ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 425 -SLHVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESL 478
             L     LP + S+D+S+N        +      +SL +    +         P L  L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186

Query: 479 DVSHNAIDHIE 489
                 I   +
Sbjct: 187 YAFSQTIGGKK 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           N     LT++           + LS N L    L  L P      L L    L+ L V  
Sbjct: 16  NCDKRNLTALP-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 431 HLPSLESLDVSHNAPNIILCVYF-----QSLKLTHCSLSSL--HVFPHLPSLESLDVSHN 483
            LP L +LD+SHN    +  +         L ++   L+SL       L  L+ L +  N
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 484 AIDHIEDSVFAK 495
            +  +   +   
Sbjct: 135 ELKTLPPGLLTP 146

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 23/148 (15%)

Query: 364 PRANQITNLSSLQLTSIHHM--HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHC 421
           P+   I +LS   L +        +    Q++L    LT   L+    L    +L L+H 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHN 87

Query: 422 SLSSLH-VFPHLPSLESLDVSHN-----APNIILCVYF------QSLKLTHCSLSSLH-- 467
            L SL  +   LP+L  LDVS N                     Q L L    L +L   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPPG 142

Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           +    P LE L +++N +  +   +   
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 30/192 (15%)

Query: 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVD 393
           DL K    L L+                         NL   +LT +           +D
Sbjct: 28  DLPKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83

Query: 394 LSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNA----- 444
           LS+N L +     + L  L     L ++   L+SL       L  L+ L +  N      
Sbjct: 84  LSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 445 PNIILCVYFQSL-KLTHCSLS-----SLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKY 496
           P +          KL   SL+      L   +   L +L++L +  N++  I    F   
Sbjct: 141 PGL-----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS- 194

Query: 497 EACVQVILTGNP 508
                  L GNP
Sbjct: 195 HLLPFAFLHGNP 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           NL    +T +      +  +  +  N+ + +  L  +      + L L+H  +S L    
Sbjct: 25  NLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLK 82

Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
            L  LE L V+ N    +  +    L    L +  L       HL +LE L + +N +  
Sbjct: 83  DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS 142

Query: 488 IED 490
           I  
Sbjct: 143 IVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           N  +  + S+  M  F + K++ LS+N +++  L  L  L   E L +    L +L+  P
Sbjct: 47  NGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNGIP 104

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
               L  L + +N      ++I     + L + +  L S+ +   L  LE LD+  N I 
Sbjct: 105 SA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163

Query: 487 HIED 490
           +   
Sbjct: 164 NTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 399 LTNNCLRHLTPLVACESLK---LTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCV 451
                +  + P     +     L   S++ L     L  +++ +  ++       +    
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63

Query: 452 YFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
             + L L+H  +S L     L  LE L V+ N + ++ 
Sbjct: 64  NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN 101

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 26/149 (17%)

Query: 367 NQITNLSSL-----------QLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVA 412
           N +  L               ++ +         K + L+NN +T          + +  
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRV-- 146

Query: 413 CESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSS 465
            + L L    + ++    +     +LE L++ +N        ++    ++L L+   L+ 
Sbjct: 147 -QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205

Query: 466 LH-VFPHLPSLESLDVSHNAIDHIEDSVF 493
           +   F     +  + + +N +  IE ++ 
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALR 234

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 368 QITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHC 421
           +I  ++   L                 +DLS NPL+      L   T L   E L L+  
Sbjct: 13  KIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKL---ELLNLSSN 68

Query: 422 SLSSLHVFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480
            L        L +L +LD+++N    +++    ++L   + ++S +         +++ +
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYL 127

Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
           ++N I  + D           + L  N + 
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 33/141 (23%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------------NNCLRHLTP--LVACE 414
           NLSS  L     +   +  + +DL+NN +               NN +  ++       +
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHL 472
           ++ L +  ++ L          ++ LD+  N             ++   +++   +    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------------EID--TVNFAELAASS 168

Query: 473 PSLESLDVSHNAIDHIEDSVF 493
            +LE L++ +N I  ++  V 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCS 422
           N+IT L  L       +      + +DL  N +              L   E L L +  
Sbjct: 130 NKITMLRDLDEGCRSRV------QYLDLKLNEIDTVNFAELAASSDTL---EHLNLQYNF 180

Query: 423 LSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLE 476
           +  +        L++LD+S N      P          + L +  L  +        +LE
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 477 SLDVSHNAIDHI 488
             D+  N     
Sbjct: 241 HFDLRGNGFHCG 252

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 12/146 (8%)

Query: 371 NLSSLQLTSIHHM----HCFAHCKQVDLSNNPLTNNC--LRHLTPLVACESLKLTHCSLS 424
            LS   L S+           +   +D+S N         +    +     L L+   + 
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM---RFLNLSSTGIR 423

Query: 425 SLHVFPHLPSLESLDVSHNAPNIILCVYF--QSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
            +       +LE LDVS+N  +         Q L ++   L +L      P L  + +S 
Sbjct: 424 VVK-TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISR 482

Query: 483 NAIDHIEDSVFAKYEACVQVILTGNP 508
           N +  + D +F +  +  ++ L  NP
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
            L S ++ +I     F        +DLS+N L++   +    L+ L   + L L      
Sbjct: 56  ILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL---KYLNLMGNPYQ 111

Query: 425 SL---HVFPHLPSLESLDVSH-NAPNIILCVYFQSLK------LTHCSLSSL--HVFPHL 472
           +L    +FP+L +L++L + +    + I  + F  L       +   SL +        +
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
             +  L +  +    + +     
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADI 194

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 411 VACESLKLTHCSLSSLHVFPH--LPSLESLDVSHN------APNIILCVYFQSLKLTHCS 462
           ++C++  +      S    P     +++SLD+S N        ++  C   Q L L    
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 463 LSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           ++++    F  L SLE LD+S N +  +  S F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 25/118 (21%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           NLSS  +  +         + +D+SNN L +  L  L  L   + L ++   L +L    
Sbjct: 416 NLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSL-FLPRL---QELYISRNKLKTLPDAS 470

Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAID 486
             P L  + +S N                   L S+   +F  L SL+ + +  N  D
Sbjct: 471 LFPVLLVMKISRN------------------QLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 17/171 (9%), Positives = 47/171 (27%), Gaps = 32/171 (18%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
            + +L L +          +    + L  +            L +   L+L   +L+   
Sbjct: 154 EIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYF-------------QSLKLTHCSLSSLHVFP-- 470
               P       +       +++    F               ++   C+L+ L  F   
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 471 -----------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
                         ++  L +    + +   +V++  E   ++ +  + V 
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 48/236 (20%), Positives = 81/236 (34%), Gaps = 43/236 (18%)

Query: 284 SRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEII-LKRFDLLKTLDPL 342
            ++F ++  L +L       +    LT+I  +  +       N+++ L + +L   L  L
Sbjct: 355 DQTFKFLEKLQTL------DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 343 RLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPL 399
             N  ++ +  Y             QI  L+  + +S       +       + L  N L
Sbjct: 409 SENRLENLDILY-----FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 400 -----TNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVY 452
                T  C      L   + L L H  L+SL   VF HL +L  L ++ N         
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN--------- 514

Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
                     L+ L       +LE LD+S N +      VF        + +T N 
Sbjct: 515 ---------RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
           NL+  ++  I     F        ++LS N L      +   L     + L    ++ + 
Sbjct: 296 NLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 428 --VFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
              F  L  L++LD+  NA   I        + L+   L +L       +   + +S N 
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENR 412

Query: 485 IDHIEDSVF 493
           +++++   F
Sbjct: 413 LENLDILYF 421

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 26/145 (17%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCS 422
           N I  +++     +  +      + ++L +            R+L  L     L L    
Sbjct: 34  NYIRTVTASSFPFLEQL------QLLELGSQYTPLTIDKEAFRNLPNL---RILDLGSSK 84

Query: 423 LSSLH--VFPHLPSLESLDVSHN--APNIILCVYFQSLK------LTHCSLSSLH---VF 469
           +  LH   F  L  L  L +     +  ++   YF++LK      L+   + SL+    F
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 470 PHLPSLESLDVSHNAIDHIEDSVFA 494
             L SL+S+D S N I  + +    
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 359 FIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC--ESL 416
               +   N    +S  Q  S+   H   H        + + +        L       L
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAH---HIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 417 KLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHL 472
            L+H  + SL   VF  L  L+ L++++N                   ++ +    F  L
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYN------------------KINKIADEAFYGL 313

Query: 473 PSLESLDVSHNAIDHIEDSVFA 494
            +L+ L++S+N +  +  S F 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFY 335

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 21/204 (10%)

Query: 304 ISVALLTSITLLQHLHPGSSDSNEIILKR-FDLLKTLDPLRLNYYKDSESKYKIETFIQT 362
           +      ++  L  L    +    + L   F  L +L  +  +  +              
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPL 171

Query: 363 NPRANQITNLSSLQLTSIHHM---HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLT 419
             +     +L++  L S   +    C    + + L    ++ N            ++   
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--- 228

Query: 420 HCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK--------LTHCSLSSL--HVF 469
             S S          +       +         F  L         L+H  + SL   VF
Sbjct: 229 --SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 470 PHLPSLESLDVSHNAIDHIEDSVF 493
             L  L+ L++++N I+ I D  F
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAF 310

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 415 SLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNIILCVYFQSL-KLTHCSLSS------- 465
             ++      +L  V   L + E L +S N    +    F  L +L    L S       
Sbjct: 5   DGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 466 -LHVFPHLPSLESLDVSHNAIDHIEDSVFA 494
               F +LP+L  LD+  + I  +    F 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 25/149 (16%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRH--LTPLVACESLKLTHCSLSS 425
           +L S ++  +H    F       ++ L    L++  L+      L A   L L+   + S
Sbjct: 79  DLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 426 LH---VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLP------ 473
           L+    F  L SL+S+D S N   ++     + L+   L+  SL++  ++  +       
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 474 -------SLESLDVSHNAIDHIEDSVFAK 495
                   LE LDVS N         F+ 
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSN 226

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 40/246 (16%), Positives = 74/246 (30%), Gaps = 33/246 (13%)

Query: 254 TFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSIT 313
             N L  +     I    ++ +S   L    +  +    +        N   +  L  + 
Sbjct: 370 RDNALTTIHFIPSIP---DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426

Query: 314 LLQHLHPGSSDSNEIILKR-FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNL 372
            LQ L    +  +     +      +L+ L L        +  ++   +T    +    L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFL-------GENMLQLAWETELCWDVFEGL 479

Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHL 432
           S LQ               + L++N L +      + L A   L L    L+ L      
Sbjct: 480 SHLQ--------------VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

Query: 433 PSLESLDVSHNAPNIILCVYFQSLKLT-------HCSLSSLHVFPHLPSLESLDVSHNAI 485
            +LE LD+S N         F SL +         C    L  F +  +  ++ ++    
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC-ELSTFINWLNHTNVTIAGPPA 584

Query: 486 DHIEDS 491
           D     
Sbjct: 585 DIYCVY 590

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 455 SLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
             ++      +L  V   L + E L +S N I  +  S F   E    + L   
Sbjct: 5   DGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 18/143 (12%)

Query: 366 ANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHC 421
           A+ I + S  QL ++      ++   +DLS+N L+          LT L    SL L+H 
Sbjct: 19  ASNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNL---HSLLLSHN 74

Query: 422 SLSSLH--VFPHLPSLESLDVSHNA----PNIIL--CVYFQSLKLTHCSLSSL--HVFPH 471
            L+ +    F  +P+L  LD+S N        +       + L L +  +  +  + F  
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
           +  L+ L +S N I      +  
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIK 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 27/148 (18%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            LS   L  I     F     +   DLS+N L          L  L   E L L +  + 
Sbjct: 70  LLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL---EVLLLYNNHIV 125

Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
            +  + F  +  L+ L +S N             +++   +  +     LP L  LD+S 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQN-------------QISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 483 NAIDHIEDSVFAKYEACVQ--VILTGNP 508
           N +  +  +   K  A V+  + L  NP
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 23/103 (22%)

Query: 414 ESLKLTHCSLSSLH---VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--V 468
             L L+H +LS L        L +L SL                   L+H  L+ +    
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLL------------------LSHNHLNFISSEA 83

Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
           F  +P+L  LD+S N +  +++ +F+  +A   ++L  N +  
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 368 QITNLSSLQLTSIH--HMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCS 422
           +I  ++   L            + K++DLS NPL+      L   T L   E L L+   
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL---ELLNLSSNV 69

Query: 423 LSSLHVFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
           L        L +L +LD+++N    +++    ++L   + ++S +         +++ ++
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 482 HNAIDHIEDSVFAKYEACVQVILTGNP 508
           +N I  + D           + L  N 
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 25/146 (17%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------------NNCLRHLTP--LVACE 414
           NLSS  L     +   +  + +DL+NN +               NN +  ++       +
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSS 465
           ++ L +  ++ L          ++ LD+  N       A         + L L +  +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 466 LHVFPHLPSLESLDVSHNAIDHIEDS 491
           +        L++LD+S N +  +   
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPE 209

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 19/169 (11%), Positives = 38/169 (22%), Gaps = 48/169 (28%)

Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL----------------- 407
           N++  +        ++ H          DL  N      LR                   
Sbjct: 224 NKLVLIEKALRFSQNLEH---------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 408 ---TPLVACESLKLTH-----CSLSSLHVFPHLPSLES-----LDVSHNAPNIILCVYF- 453
                   C    L H     C          L +L+      L    +    + C    
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 454 ----QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKY 496
               + +        ++   V     +  +L+    A+D    +    +
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 27/237 (11%)

Query: 272 NVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILK 331
                 ++L   +    W  F+  L   +   +    ++++ L   L     D +   LK
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ 391
              + +    +  + +         +++I        I N +      +H M C +    
Sbjct: 277 ALSIHQ----VVSDVF------GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLCPSKISP 325

Query: 392 ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----HVFPHLPSLESLDVSHNA 444
              +D SNN LT+    +   L   E+L L    L  L     +   + SL+ LD+S N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 445 PNIIL-CVYFQSLK------LTHCSLSSLHVFPHLPS-LESLDVSHNAIDHIEDSVF 493
            +           K      ++   L+   +F  LP  ++ LD+  N I  I   V 
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDT-IFRCLPPRIKVLDLHSNKIKSIPKQVV 441

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 367 NQIT-NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCS 422
           ++   + S   L  +           +++S N ++    + +  L+ L     L ++H  
Sbjct: 1   SEFLVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKL---RILIISHNR 56

Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH---VFPHLPS 474
           +  L   VF     LE LD+SHN    I C    +LK   L+  +  +L     F ++  
Sbjct: 57  IQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 475 LESLDVSHNAIDHIEDSVFA 494
           L+ L +S   ++       A
Sbjct: 117 LKFLGLSTTHLEKSSVLPIA 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/230 (11%), Positives = 62/230 (26%), Gaps = 24/230 (10%)

Query: 290 VRFLLSLSCPYRNYISVALLTSITL--LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYY 347
            + LL L   Y        L       L  + P + + + I+      +  L+   +   
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 348 KDSESKYKIETFIQTNPRANQITNLS--SLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR 405
            +        + +       +++NL+  +++ T    +          +    ++N    
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV--- 257

Query: 406 HLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LT 459
            L   +       +  SL +L +           V  +         ++          T
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSI---------HQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 460 HCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
                 +H      +     LD S+N +                +IL  N
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 27/136 (19%)

Query: 368 QITNLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHC 421
           Q+ +LS  ++ +I     +     +    L+ NP+ +        L+ L   + L     
Sbjct: 55  QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVET 110

Query: 422 SLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
           +L+SL      HL +L+ L+V+HN              +   S      F +L +LE LD
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHN-------------LIQ--SFKLPEYFSNLTNLEHLD 155

Query: 480 VSHNAIDHIEDSVFAK 495
           +S N I  I  +    
Sbjct: 156 LSSNKIQSIYCTDLRV 171

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQV 392
           +  L  L  L L           +     +   + Q        L S+ +     H K +
Sbjct: 72  YQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTL 126

Query: 393 ---DLSNNPLTN----NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLE----SLD 439
              ++++N + +        +LT L   E L L+   + S++      L  +     SLD
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNL---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSS-------LHVFPHLPSLESLDVSHNAID 486
           +S N  N I    F+ ++L   +L +         +F  L SL+ + +  N  D
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 33/221 (14%)

Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNY----------YKDSESKYKIETFIQTNP 364
           LQ ++       +          ++  L L+           + D+ +  KI++ I +N 
Sbjct: 192 LQDMNEYWLGWEKC--GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 365 RANQITNLSSLQLTSIHHMHCF----AHCKQVDLSNNPLT---NNCLRHLTPLVACESLK 417
             N  ++          +        +  K  DLS + +     +   H T L   E L 
Sbjct: 250 Y-NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL---EQLT 305

Query: 418 LTHCSLSSL--HVFPHLPSLESLDVSHNA----PNIIL--CVYFQSLKLTHCSLSSLH-- 467
           L    ++ +  + F  L  L  L++S N      + +       + L L++  + +L   
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
            F  LP+L+ L +  N +  + D +F +  +  ++ L  NP
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 414 ESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPH 471
             + L+  S++ L    F  L  L+ L V    P +++                 + F  
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---------------RNNTFRG 77

Query: 472 LPSLESLDVSHNAIDHIEDSVFAK 495
           L SL  L + +N    +E   F  
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNG 101

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 20/132 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
           +LS  ++ ++     F+H   +    L+ N +    +N    LT L     L L+   L 
Sbjct: 281 DLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---LKLNLSQNFLG 336

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPS 474
           S+   +F +L  LE LD+S+N    +    F      + L L    L S+   +F  L S
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396

Query: 475 LESLDVSHNAID 486
           L+ + +  N  D
Sbjct: 397 LQKIWLHTNPWD 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 367 NQITNLSSLQLTSIHHMH----CFAHCKQ---VDLSNNPLT-----NNCLRHLTPLVAC- 413
           + + +L+ ++L +  +M           +   ++++ N              L       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 414 ---ESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSL 463
              +   + + +L           +  L  LD  HN           V    LKL +  +
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607

Query: 464 SSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
             +          +E L  SHN + +I +   AK
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 26/149 (17%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-- 425
             S  +L  I ++           VD S N + +        +   + +  +  +LS   
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684

Query: 426 -----LHVFPHLPSLESLDVSHN-------------APNIILCVYFQSLKLTHCSLSSLH 467
                  +F     + ++ +S+N               N        ++ L    L+SL 
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 468 ---VFPHLPSLESLDVSHNAIDHIEDSVF 493
                  LP L ++DVS+N          
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 29/168 (17%)

Query: 367 NQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACES 415
           +       +Q        L             +   +D  +N + +  L      V    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTD 599

Query: 416 LKLTHCSLSSL--HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSSL 466
           LKL +  +  +          +E L  SHN         N        S+  ++  + S 
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 467 HV-------FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
                         +  ++ +S+N I      +FA       +IL+ N
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 33/152 (21%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT----------NNCLRHLTPLVACESLK 417
            LS  ++        FA       + LSNN +T          +   ++   L    ++ 
Sbjct: 679 TLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL---TTID 734

Query: 418 LTHCSLSSLH---VFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSS---- 465
           L    L+SL        LP L ++DVS+N         +     ++  + H   +     
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 466 LHVFP----HLPSLESLDVSHNAIDHIEDSVF 493
           L  +P      PSL  L +  N I  +++ + 
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 412 ACESLKLTHCS----LSSLHVFPHLPSLESLDVSHNAPNIILCV---------YFQSLKL 458
                    C+    L SLH  P   +L  L + +     +  +           ++L +
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTI 63

Query: 459 THCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
               L  +    F   P L  L++S NA++ +            +++L+GNP+   
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ-ELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCS 422
           + +       L S+HH+    +  ++ + N      L    LR L  L    +L +    
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGEL---RNLTIVKSG 67

Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465
           L  +    F   P L  L++S NA   +     Q L L    LS 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 50/225 (22%)

Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
           +S+  P  N  S++  +    +   +             +D  +       N  +     
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYAD-------YFSAWDKWEKQALPGENRNE----- 48

Query: 354 YKIETFIQTNPRANQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLT-------- 400
                   +  +   I   S L      L+S+   +       ++++ N L         
Sbjct: 49  ------AVSLLKECLINQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLPELPAS 101

Query: 401 -------NNCLRHLTP-LVACESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNII--L 449
                  +N L  L     + + L + +  L+ L   P LP  LE ++  +N   ++  L
Sbjct: 102 LEYLDACDNRLSTLPELPASLKHLDVDNNQLTML---PELPALLEYINADNNQLTMLPEL 158

Query: 450 CVYFQSLKLTHCSLSSLHVFPHLP-SLESLDVSHNAIDHIEDSVF 493
               + L + +  L+ L   P LP SLE+LDVS N ++ +     
Sbjct: 159 PTSLEVLSVRNNQLTFL---PELPESLEALDVSTNLLESLPAVPV 200

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 32/142 (22%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
           +    +L+++  +   A  K +D+ NN LT               NN L  L  L    E
Sbjct: 106 DACDNRLSTLPEL--PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLE 163

Query: 415 SLKLTHCSLSSLHVFPHLP-SLESLDVSHNA----PNII-----LCVYFQSLKLTHCSLS 464
            L + +  L+ L   P LP SLE+LDVS N     P +              +     ++
Sbjct: 164 VLSVRNNQLTFL---PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 465 SL-HVFPHLPSLESLDVSHNAI 485
            +      L    ++ +  N +
Sbjct: 221 HIPENILSLDPTCTIILEDNPL 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
           N IT L   Q T++           +   +N LTN  +  LT L     L      L+ L
Sbjct: 74  NNITTLDLSQNTNL---------TYLACDSNKLTNLDVTPLTKL---TYLNCDTNKLTKL 121

Query: 427 HVFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
                 P L  L+ + N    I          L        +         L +LD S N
Sbjct: 122 D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 484 AIDHIE 489
            I  ++
Sbjct: 181 KITELD 186

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 15/142 (10%)

Query: 367 NQITNLSSLQLTSIHHMHC-FAHCKQVDLSNNP------LTNNCLRHLTPLVACESLK-- 417
           N++T L   Q   + +++C      ++D+S+N          N       +     L   
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

Query: 418 -LTHCSLSSLHVFPHLPSLESLDVSHN---APNIILCVYFQSLKLTHCSLSSLHVFPHLP 473
             +   ++ L        L  L+   N     ++   +    L  +   L+ +     L 
Sbjct: 176 DCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLT 233

Query: 474 SLESLDVSHNAIDHIEDSVFAK 495
            L   D S N +  ++ S  +K
Sbjct: 234 QLTYFDCSVNPLTELDVSTLSK 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 23/134 (17%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
             +  +     T + +                +    + H T L     L      ++ L
Sbjct: 264 TDLLEIDLTHNTQLIYFQA--------EGCRKIKELDVTHNTQL---YLLDCQAAGITEL 312

Query: 427 HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
                 P L  L +++        + N  L    +SL   +  +        +P+L +  
Sbjct: 313 -DLSQNPKLVYLYLNNTELTELDVSHNTKL----KSLSCVNAHIQDFSSVGKIPALNNNF 367

Query: 480 VSHNAIDHIEDSVF 493
            +      +     
Sbjct: 368 EAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN-- 443
           FA                   L  L    SL   + S++ +     L  L  L  + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATL---TSLDCHNSSITDMTGIEKLTGLTKLICTSNNI 76

Query: 444 -APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
              ++        L      L++L     L  L  L+   N +  ++ S
Sbjct: 77  TTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVS 124

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 23/125 (18%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
             IT L   Q   +           + L+N  LT   + H T L   +SL   +  +   
Sbjct: 307 AGITELDLSQNPKL---------VYLYLNNTELTELDVSHNTKL---KSLSCVNAHIQDF 354

Query: 427 HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
                +P+L +   +      +      +  LT              S + LD   N ++
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA-----------VSPDLLDQFGNPMN 403

Query: 487 HIEDS 491
                
Sbjct: 404 IEPGD 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 33/152 (21%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT----------NNCLRHLTPLVACESLK 417
           NLS+ Q++       F+       ++L  N LT          N   ++   L    S+ 
Sbjct: 439 NLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL---TSID 494

Query: 418 LTHCSLSSL---HVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSS---- 465
           L    L+ L        LP L  +D+S+N+        +     +   + +   +     
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 466 LHVFP----HLPSLESLDVSHNAIDHIEDSVF 493
           L  +P      PSL  L +  N I  + + + 
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 22/227 (9%), Positives = 56/227 (24%), Gaps = 46/227 (20%)

Query: 294 LSLSCPYRNYISVALLTSI-------TLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNY 346
           L+L     +   V                +          +  +         D L  + 
Sbjct: 110 LALG---SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD-LIKDC 165

Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT--- 400
                 +  I+   +   +  QI    S  +T +          +     + N+P     
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQI-GQLSNNITFVSK--AVMRLTKLRQFYMGNSPFVAEN 222

Query: 401 ------------NNCLRHLTP----LVACESLKLTHCSLSSL--HVFPHLPSLESLDVSH 442
                           +        L     +++ +C   +        LP ++ ++V+ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 443 NAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
           N           S +       +L   P    ++ + + +N +    
Sbjct: 283 N--------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 369 ITNLSSL--------QLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACE 414
           +  +  L        QL     +  F    +   ++L+ N +T    N       +   E
Sbjct: 326 LQKMKKLGMLECLYNQLEGK--LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV---E 380

Query: 415 SLKLTHCSLSSL---HVFPHLPSLESLDVSHNA-------------PNIILCVYFQSLKL 458
           +L   H  L  +        +  + ++D S+N              P     +   S+ L
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 459 THCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVF 493
           ++  +S     +F     L S+++  N +  I  +  
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 379 SIHHMHCFAHCKQVDLSN--NPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLE 436
                      ++V+L     P+       L+ L AC+ L L+  ++  +     + +L 
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKISSLSGMENLR 73

Query: 437 SLDVSHNAPNII-----LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED- 490
            L +  N    I     +    + L +++  ++SL     L +L  L +S+N I +  + 
Sbjct: 74  ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 491 SVFAKYEACVQVILTGNPVSADM 513
              A  +    ++L GNP+  D 
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDY 156

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 416 LKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII-----LCVYFQSLKLTHCSLSSLHVFP 470
           +KLT   +     + +      LD+      +I         F ++  +   +  L  FP
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
            L  L++L V++N I  I + +        ++ILT N + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--NNCLRHLTPLVACESLKLTHCSLSSLHV 428
            L++  +            +++DL    +    N    L      +++  +   +  L  
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQF---DAIDFSDNEIRKLDG 59

Query: 429 FPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
           FP L  L++L V++N    I                   +   LP L  L +++N++  +
Sbjct: 60  FPLLRRLKTLLVNNNRICRI----------------GEGLDQALPDLTELILTNNSLVEL 103

Query: 489 ED-SVFAKYEACVQVILTGNPVS 510
            D    A  ++   + +  NPV+
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 371 NLSSLQLTSIHHM-HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--H 427
           +L   ++  I ++         +D S+N +    L     L   ++L + +  +  +   
Sbjct: 25  DLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEG 82

Query: 428 VFPHLPSLESLDVSHNAPNIILCV-YFQSLK-LTHCSLSS----------LHVFPHLPSL 475
           +   LP L  L +++N+   +  +    SLK LT+  +            L+V   +P +
Sbjct: 83  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142

Query: 476 ESLD 479
             LD
Sbjct: 143 RVLD 146

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 30/123 (24%)

Query: 390 KQVDLSNNPLTNNCLRHLTPLV-ACESLKLTHCSLSSLH------VFPHLPSLESLDVSH 442
           + +D+    L++     L PL+  C+ ++L  C L+              P+L  L++  
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 443 NAPN----IILCVYFQSLKLTHCSLSSL----------------HVFPHLPSLESLDVSH 482
           N         +    Q L+   C +  L                     LP+L+ L +S 
Sbjct: 66  NELGDVGVHCVL---QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 483 NAI 485
           N +
Sbjct: 123 NLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 37/200 (18%), Positives = 51/200 (25%), Gaps = 64/200 (32%)

Query: 336 LKTLDPLRLNYYKDSESKYKIETFIQTNP-------RANQITNLSSLQLTSIHHMHCFAH 388
           L+ L  L  N   D          +  +            IT      L           
Sbjct: 229 LRELA-LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-----VLRA 282

Query: 389 CKQV---DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VF 429
            + +    L+ N L +   R L     CE+L    C L SL                 V 
Sbjct: 283 KESLKELSLAGNELGDEGARLL-----CETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 430 PHLPSLESLDVSHNAPNI------ILCVYFQSLKLTHCSLSSLH---------------- 467
                L  L +S+N   +       LC   Q L      L  L                 
Sbjct: 338 AQNRFLLELQISNN--RLEDAGVRELC---QGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392

Query: 468 VFPHLPSLESLDVSHNAIDH 487
                 SL  LD+S+N +  
Sbjct: 393 TLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 34/158 (21%), Positives = 48/158 (30%), Gaps = 52/158 (32%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRHLTPLVACESLKLTHCSL 423
             +T      L+S            +    LS+N L +  L+ L     CE L    C L
Sbjct: 95  CCLTGAGCGVLSST-----LRTLPTLQELHLSDNLLGDAGLQLL-----CEGLLDPQCRL 144

Query: 424 SSLH----------------VFPHLPSLESLDVSHNAPN----IILCVYFQSLKLTHCSL 463
             L                 V    P  + L VS+N  N     +LC   Q LK + C L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC---QGLKDSPCQL 201

Query: 464 SSLH----------------VFPHLPSLESLDVSHNAI 485
            +L                 +     SL  L +  N +
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 38/128 (29%)

Query: 393 DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----------------HVFPHLPSLE 436
           +L +N L +  +  +      + L+   C +  L                     LP+L+
Sbjct: 62  NLRSNELGDVGVHCV-----LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 437 SLDVSHNAPN----IILCVYF-------QSLKLTHCSLSSL------HVFPHLPSLESLD 479
            L +S N        +LC          + L+L +CSLS+        V    P  + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 480 VSHNAIDH 487
           VS+N I+ 
Sbjct: 177 VSNNDINE 184

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 44/215 (20%)

Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSS 374
           L++L    +    ++      L  L+   +++        +++ +++   +   I    S
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 375 LQLTSIHHMHCFAHCKQVDLSNNPLTNN-------CLRHLTPLVACESLKLTHCSLSSL- 426
           L   S   +  F     +DLS+NP           C      L   + L L +  + +  
Sbjct: 162 LNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL---QVLALRNAGMETPS 217

Query: 427 ----HVFPHLPSLESLDVSHN----APNIILCVYFQSLK--------------------- 457
                +      L+ LD+SHN    A     C +   L                      
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277

Query: 458 ---LTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
              L++  L        LP + +L +  N     E
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL-H 427
           N+    LT++      AH   + + +N LT+       L       +L+++   L+SL  
Sbjct: 46  NVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPELR------TLEVSGNQLTSLPV 98

Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
           + P L  L            +       L +    L+SL      P L+ L VS N +  
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPS-GLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLAS 155

Query: 488 I 488
           +
Sbjct: 156 L 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 31/151 (20%)

Query: 367 NQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRH 406
                L  L     QL S+  +   +   ++   NN LT               +N L  
Sbjct: 138 VLPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195

Query: 407 LTPLVAC-ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSL 463
           L  L +    L   +  L+SL        L+ L VS N    +  L    + L ++   L
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253

Query: 464 SSLHVFPHLP-SLESLDVSHNAIDHIEDSVF 493
           +SL   P LP  L SL V  N +  + +S+ 
Sbjct: 254 TSL---PMLPSGLLSLSVYRNQLTRLPESLI 281

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 31/138 (22%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
              + QLTS+      +  +++ +S+N L                NN L  L  L +  +
Sbjct: 167 WAYNNQLTSL--PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLK 224

Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNII--LCVYFQSLKLTHCSLSSL-H 467
            L ++   L+SL        L+ L VS N     P +   L     SL +    L+ L  
Sbjct: 225 ELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLPMLPSGL----LSLSVYRNQLTRLPE 278

Query: 468 VFPHLPSLESLDVSHNAI 485
              HL S  ++++  N +
Sbjct: 279 SLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 21/107 (19%)

Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----- 444
           ++  + LT        H+T      +L +   +L+SL      P L +L+VS N      
Sbjct: 46  NVGESGLTTLPDCLPAHIT------TLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97

Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
                 +           L +L        L  L +  N +  +   
Sbjct: 98  VLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVL 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 93/528 (17%), Positives = 174/528 (32%), Gaps = 142/528 (26%)

Query: 24  YHNLMETIFEKRKNQ-EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELH 82
           +H+ M+  FE  ++Q +Y D         + N  D        K+V    K+ L++EE+ 
Sbjct: 3   HHHHMD--FETGEHQYQYKDILSVFEDAFVDNF-DC-------KDVQDMPKSILSKEEID 52

Query: 83  ELV---DRELKLTK--DCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137
            ++   D      +    LL++ +      Q+ +V + +    NY+  +       E  +
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEM---VQK-FVEEVL--RINYKFLMS--PIKTEQRQ 104

Query: 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL- 196
            +      R Y+  R ++       Y+  ++   F+ Y+    R +    L       L 
Sbjct: 105 PSM---MTRMYIEQRDRL-------YNDNQV---FAKYNVS--RLQPYLKL----RQALL 145

Query: 197 PIEQDKYVNEFSM--------VESAVFTEPKDQSAWFYQRWL-LGERTSPVQIISAGVLP 247
            +   K V    +              +        F   WL L    SP  ++      
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---- 201

Query: 248 SGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVA 307
                      +D   TS+    SN+ +   S+    R  +  +       PY N     
Sbjct: 202 ----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYEN----C 246

Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLL-KTL---------DPLRLNYYKDSESKYKIE 357
           LL    +L ++     ++       F+L  K L         D L           +   
Sbjct: 247 LL----VLLNV----QNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 358 TF----------------IQTNPRANQITNLSSLQLTSI-----HHMHCFAHCKQVDLSN 396
           T                  Q  PR  ++   +  +L+ I       +  + + K V+   
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVN--C 352

Query: 397 NPLTN---NCLRHLTPLVACESLKLTHCSLSSLHVFP---HLPS--LESL--DVSHNAPN 446
           + LT    + L  L P    E  K+       L VFP   H+P+  L  +  DV  +   
Sbjct: 353 DKLTTIIESSLNVLEPA---EYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 447 IILCVYFQ-SL-----KLTHCSLSSLHVFPHLPSLESLDVSHNA-IDH 487
           +++    + SL     K +  S+ S++       LE+    H + +DH
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDH 452

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 26/134 (19%)

Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN---- 443
            L  N +             L     + L++  +S L    F  L SL SL +  N    
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKL---RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 444 -APNIILCVYFQSL-KLTHCSLS-----SLH--VFPHLPSLESLDVSHNAIDHIEDSVFA 494
              ++     F+ L  L    L+      L    F  L +L  L +  N +  I    F+
Sbjct: 95  LPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 495 KYEACVQVILTGNP 508
              A   + L  NP
Sbjct: 150 PLRAIQTMHLAQNP 163

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 390 KQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
           K++ L N+      L  LT      E L   +  L+S+   P L  L+ L++S N  +  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG 79

Query: 449 L------CVYFQSLKLTH---CSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
           L      C     L L+      LS++     L +L+SLD+ +  + ++ D
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 434 SLESLDVSHNAPNII-------LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
            ++ L + ++  N              + L   +  L+S+   P L  L+ L++S N + 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 487 HIEDSVFAKYEACVQVILTGN 507
              + +  K      + L+GN
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGN 98

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCF 386
           E+  +    +K L  L  +   + + +   + F +      +  +  ++ LTSI ++   
Sbjct: 10  ELRNRTPSDVKELV-LDNSRSNEGKLEGLTDEFEEL-----EFLSTINVGLTSIANLPKL 63

Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTH---CSLSSLHVFPHLPSLESLDVSHN 443
              K+++LS+N ++               L L+      LS++     L +L+SLD+ + 
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
                         +T+ +    +VF  LP L  LD
Sbjct: 124 -E------------VTNLNDYRENVFKLLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 390 KQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
           +++ L N    +  +  LT   V  E L L +  L S+   P LP L+ L++S N     
Sbjct: 27  RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG 86

Query: 449 L------CVYFQSLKLTH---CSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
           L            L L+      +S+L     L  L+SLD+ +  + ++ D
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 432 LPSLESLDVSHNAPNII-------LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
             ++  L + +   N           V  + L L +  L S+   P LP L+ L++S N 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 485 IDHIEDSVFAKYEACVQVILTGN 507
           I    D +  K      + L+GN
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGN 105

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHC 385
            E+  +    ++ L  L      D + +     F+       +  +L ++ L S+ ++  
Sbjct: 16  LELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNL-----EFLSLINVGLISVSNLPK 69

Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTH---CSLSSLHVFPHLPSLESLDVSH 442
               K+++LS N +          L     L L+      +S+L     L  L+SLD+ +
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 443 NAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
                         ++T+ +     VF  LP L  LD
Sbjct: 130 C-------------EVTNLNDYRESVFKLLPQLTYLD 153

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 25/124 (20%)

Query: 371 NLSSLQLT-SIHHMHCFAHCKQVDLSNNPLT-----NNCLRHLTPLVACESLKLTHCSLS 424
            LS+  +  S+    C A    +DLS N L+        L   + L   + L ++  +L 
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL---KFLNVSSNTLD 139

Query: 425 ---SLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
               +     L SLE LD+S N              ++  ++    +      L+ L +S
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSAN-------------SISGANVVGWVLSDGCGELKHLAIS 186

Query: 482 HNAI 485
            N I
Sbjct: 187 GNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 29/147 (19%)

Query: 364 PRANQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVA 412
                + + S L+        L     +           +DLS N ++   +        
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 413 CESLK---LTHCSLSSLHVFP--HLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCS 462
           C  LK   ++   +S           +LE LDVS N      P +  C   Q L ++   
Sbjct: 177 CGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234

Query: 463 LSSLHVFP----HLPSLESLDVSHNAI 485
           LS    F         L+ L++S N  
Sbjct: 235 LSG--DFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 36/133 (27%)

Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCSLS 424
           I+  + L+               +++S+N          L+ L      + L L     +
Sbjct: 243 ISTCTELK--------------LLNISSNQFVGPIPPLPLKSL------QYLSLAENKFT 282

Query: 425 ---SLHVFPHLPSLESLDVSHNA------PNIILCVYFQSLKLTHCSLS---SLHVFPHL 472
                 +     +L  LD+S N       P    C   +SL L+  + S    +     +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 473 PSLESLDVSHNAI 485
             L+ LD+S N  
Sbjct: 343 RGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 411 VAC-----ESLKLTHCSLS-SLHVFP----HLPSLESLDVSHNA-----PNIILCVYFQS 455
           V C      S+ L+   L+            L  LESL +S++                S
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 456 LKLTHCSLS----SLHVFPHLPSLESLDVSHNAID 486
           L L+  SLS    +L        L+ L+VS N +D
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 29/150 (19%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
           N++      ++T I       +  ++      L             L   E ++++   +
Sbjct: 11  NRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDL---EKIEISQNDV 66

Query: 424 SSL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESL 478
             +    VF +LP L  + +                     +L  ++   F +LP+L+ L
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKA-----------------NNLLYINPEAFQNLPNLQYL 109

Query: 479 DVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
            +S+  I H+ D         V + +  N 
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 32/121 (26%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
            L+   +  IH+   F   +        NN L    N+     +       L ++   + 
Sbjct: 160 WLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGP---VILDISRTRIH 215

Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
           SL  +   +L  L +    +                    L  L     L +L    +++
Sbjct: 216 SLPSYGLENLKKLRARSTYN--------------------LKKLPTLEKLVALMEASLTY 255

Query: 483 N 483
            
Sbjct: 256 P 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 26/190 (13%), Positives = 44/190 (23%), Gaps = 66/190 (34%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---------------------NNCLRH 406
                +L  I     F+    +   ++S N +                       N L +
Sbjct: 36  RFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 407 LTP-----LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA------PNII--LCV 451
           + P     L   + L +++  +  L      H      LD+  N        N    L  
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 452 YFQSLKLTHCSLSSLH--------------------------VFPHLPSLESLDVSHNAI 485
               L L    +  +H                          VF        LD+S   I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 486 DHIEDSVFAK 495
             +       
Sbjct: 215 HSLPSYGLEN 224

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 31/148 (20%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
            L++ + T +     F    Q+   + SNN +T+         + +     + LT   L 
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV---NEILLTSNRLE 94

Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
           ++   +F  L SL++L +  N                   ++ +    F  L S+  L +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSN------------------RITCVGNDSFIGLSSVRLLSL 136

Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNP 508
             N I  +    F    +   + L  NP
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 30/131 (22%)

Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCSLSSLH- 427
           S+ +L  I   H   +  ++ L+NN  T        + L  L     +  ++  ++ +  
Sbjct: 19  SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQL---RKINFSNNKITDIEE 74

Query: 428 -VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 484
             F     +  + ++ N                   L ++   +F  L SL++L +  N 
Sbjct: 75  GAFEGASGVNEILLTSN------------------RLENVQHKMFKGLESLKTLMLRSNR 116

Query: 485 IDHIEDSVFAK 495
           I  + +  F  
Sbjct: 117 ITCVGNDSFIG 127

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 28/112 (25%)

Query: 390 KQVDLSNNPLTN---NCLRHLTPLVACESLKLTH-CSLSSL--HVFPHLPSLESLDVSHN 443
           + + L    L     +   +L  +     + ++   +L  L  H F +L  +  +++ + 
Sbjct: 34  QTLKLIETHLRTIPSHAFSNLPNI---SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 444 APNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVF 493
                             +L+ +       LP L+ L + +  +    D   
Sbjct: 91  -----------------RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 32/137 (23%)

Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
            + +  L     +           +++++NP    +  N  + L       +LKL +   
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET--LTLKLYNNGF 168

Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPS-LESL 478
           +S+  + F +   L+++ ++ N                   L+ +    F  + S    L
Sbjct: 169 TSVQGYAF-NGTKLDAVYLNKN-----------------KYLTVIDKDAFGGVYSGPSLL 210

Query: 479 DVSHNAIDHIEDSVFAK 495
           DVS  ++  +       
Sbjct: 211 DVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 413 CESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSL-KLTH------CSLS 464
           C   +    +   +   P LP S ++L +       I    F +L  ++        +L 
Sbjct: 10  CHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 465 SL--HVFPHLPSLESLDVSHN-AIDHIEDSVFAK 495
            L  H F +L  +  +++ +   + +I+     +
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 34/145 (23%)

Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLS 424
           + + + +     ++            +L + PL    +    L+ L   + + +    L 
Sbjct: 73  DLLEDATQPGRVAL------------ELRSVPLPQFPDQAFRLSHL---QHMTIDAAGLM 117

Query: 425 SL-HVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCS-----------LSSLH 467
            L         LE+L ++ N       +I      + L +  C              +  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 468 VFPHLPSLESLDVSHNAIDHIEDSV 492
               L +L+SL +    I  +  S+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASI 202

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 15/128 (11%)

Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSS 425
           + + S+  LT +         K + LS N ++      +  L+ L     L+L+H  + S
Sbjct: 35  MVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSEL---RVLRLSHNRIRS 90

Query: 426 LH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH---VFPHLPSLES 477
           L   VF     LE LDVSHN    I C    SL+   L+      L     F +L  L  
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 478 LDVSHNAI 485
           L +S    
Sbjct: 151 LGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 42/268 (15%), Positives = 91/268 (33%), Gaps = 48/268 (17%)

Query: 278 TSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLK 337
            ++        W   +      +   +    + ++T+ + +       +E  LK   +  
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 338 TLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDL 394
               ++   +         +  + +      I  LS      IH M C         ++ 
Sbjct: 312 ----VKNQVF------LFSKEALYSVFAEMNIKMLSISDTPFIH-MVCPPSPSSFTFLNF 360

Query: 395 SNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----HVFPHLPSLESLDVSHNA----PN 446
           + N  T++  +  + L   ++L L    L +      +  ++ SLE+LDVS N+      
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 447 IILCVYFQSLK-------------------------LTHCSLSSLHV-FPHLPSLESLDV 480
              C + +S+                          L +  + S+     HL +L+ L+V
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480

Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNP 508
           + N +  + D VF +  +   + L  NP
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 413 CESLKLTHCSLSSL-HVFPHLP-SLESLDVSHN------APNIILCVYFQSLKLTHCSLS 464
            E   +   S  +L HV   LP   ++L +S N       P+I      + L+L+H  + 
Sbjct: 30  NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 465 SLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
           SL   VF     LE LDVSHN + +I     A 
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 28/158 (17%)

Query: 371 NLSSLQLTSIHHM--HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSS 425
            L+  +L ++         + + + +++N L          L  L     L+L    L S
Sbjct: 67  YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL---AELRLDRNQLKS 123

Query: 426 LH--VFPHLPSLESLDVSHNA-----PNIILCVYFQSL-KLTHCSLSS-------LHVFP 470
           L   VF  L  L  L + +N        +     F  L  L    L +          F 
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGV-----FDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
            L  L++L + +N +  + +  F   E    + L  NP
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
           DL +N L++        LT L     L L    L +L   +F  L +LE+L V+ N    
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKL---RLLYLNDNKLQTLPAGIFKELKNLETLWVTDN---- 95

Query: 448 ILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
                          L +L   VF  L +L  L +  N +  +   VF  
Sbjct: 96  --------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 385 CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA 444
            FA   + +L    +T+        L + + +   +  + S+    +LP++  L +  N 
Sbjct: 17  AFAETIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN- 73

Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
                             L  +     L +L  L ++ N +  + + VF K
Sbjct: 74  -----------------KLHDISALKELTNLTYLILTGNQLQSLPNGVFDK 107

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           NL    +T     +      Q+  +N+ + +  ++ +  L     L L    L  +    
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALK 82

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSL-KLT--HC---SLSSLH--VFPHLPSLESL 478
            L +L  L ++ N     PN +    F  L  L         L SL   VF  L +L  L
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 479 DVSHNAIDHIEDSVF 493
           +++HN +  +   VF
Sbjct: 139 NLAHNQLQSLPKGVF 153

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 25/105 (23%)

Query: 395 SNNPLTNNCLRHLTPLVACESL-KLTHCSLSS----------LHVFPHLPSLESLDVSHN 443
             +   +  +    PL + +    L    +                  LP LE++D+S  
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 444 APNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDH 487
                         LT      L      +  L+ +++ +N +  
Sbjct: 290 -------------VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 40/194 (20%)

Query: 317 HLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ 376
            +    + S   +++RF  +++++               ++                   
Sbjct: 49  FIGNCYAVSPATVIRRFPKVRSVE---------------LKGKPHFADFNLVPDGWGGYV 93

Query: 377 LTSIHHM-HCFAHCKQVDLSNNPLTNNCLRHLTPLVAC---ESLKLTHCSLSS----LHV 428
              I  M   +   +++ L    +T++CL  +    +    + L L+ C   S      +
Sbjct: 94  YPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAI 151

Query: 429 FPHLPSLESLDVSHNAPNII----------LCVYFQSLKLTHC----SLSSL-HVFPHLP 473
                +L+ LD+  +  + +                SL ++      S S+L  +    P
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 474 SLESLDVSHNAIDH 487
           +L+SL ++      
Sbjct: 212 NLKSLKLNRAVPLE 225

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 22/98 (22%)

Query: 392 VDLSNNPLTNNCLRHLTPLVACESLKLTHC------SLSSLHVFPHLP-SLESLDVSHNA 444
           +D +++ + +    H+  L   E ++L  C       L  L    +L  S+  +++    
Sbjct: 66  IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125

Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
                        +T   + +LH   H  +L+ L +S 
Sbjct: 126 ------------NVTDKGIIALH---HFRNLKYLFLSD 148

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 21/133 (15%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCS----L 423
           +LS+  +         + C +   + L    L++  +  L        L L+ CS     
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 424 SSLHVFPHLPSLESLDVSH------NAPNIIL---CVYFQSLKLTHCSL----SSL-HVF 469
           +   +      L+ L++S           + +         L L+        S L  + 
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 470 PHLPSLESLDVSH 482
              P+L  LD+S 
Sbjct: 219 RRCPNLVHLDLSD 231

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 37/133 (27%)

Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSS 425
           I++L +L                +    N ++    +     + L    S+ ++   L+ 
Sbjct: 145 ISSLPNLV--------------GITFDGNRISGAIPDSYGSFSKLF--TSMTISRNRLTG 188

Query: 426 LHVFPHLP------SLESLDVSHN-----APNII-LCVYFQSLKLTHCSLS-SLHVFPHL 472
                 +P      +L  +D+S N     A  +       Q + L   SL+  L      
Sbjct: 189 -----KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 473 PSLESLDVSHNAI 485
            +L  LD+ +N I
Sbjct: 244 KNLNGLDLRNNRI 256

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 30/113 (26%)

Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VFPHLP 433
             +DLS N L       L               + SL+                +   L 
Sbjct: 199 TSLDLSANLLGLKSYAEL-----AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 434 SLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
            L+++ + ++    +     ++L            FP++  +  +D +   I 
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKAL---------GAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 39/135 (28%)

Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VFPHLP 433
             ++L  N L       L      + L     +++SL+                    +P
Sbjct: 141 TSLNLRGNDLGIKSSDEL-----IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 434 -SLESLDVSHNAPNIILCVYF-QSLKLTHCSLSSLH----------------VFPHLPSL 475
            S+ SLD+S N   +                + SL+                +   L  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 476 ESLDVSHNAIDHIED 490
           +++ + ++ + ++  
Sbjct: 256 QTVYLDYDIVKNMSK 270

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 31/177 (17%)

Query: 342 LRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHM----HCFAHCKQVDLSNN 397
             +NY        +I   I ++   + I N    +      +          + +DL   
Sbjct: 78  KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGL 137

Query: 398 PLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP-HLPSLESLDVSHNAPNIILCVYFQSL 456
               + +           L    C  ++L +   ++P L SL++S+N             
Sbjct: 138 RSDPDLVAQNI----DVVLNRRSCMAATLRIIEENIPELLSLNLSNN------------- 180

Query: 457 KLTHCSLSSLHVFPHL----PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509
                 L  L     +    P+L+ L++S N +    +    K     ++ L GN +
Sbjct: 181 -----RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	522
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	100.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.97
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.49
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.34
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.28
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.27
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.26
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.26
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.21
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.2
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.17
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.1
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.03
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.01
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.97
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.97
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.9
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.86
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.83
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.82
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.79
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.76
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.74
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.73
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.54
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.39
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.3
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.21
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.03
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.01
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.0
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.98
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.96
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.51
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.48
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.29
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.12
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.03
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.72
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.67
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.59
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.56
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.5
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.66
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	92.93
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.43
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	91.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.86
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.79
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	81.62
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	81.17

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=100.00  E-value=2.1e-75  Score=622.87  Aligned_cols=484  Identities=35%  Similarity=0.590  Sum_probs=399.2

Q ss_pred             CCCcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Q psy13451          1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL   76 (522)
Q Consensus         1 mhg~~~~~~~~~~~----~~~~~k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~   76 (522)
                      ||||+|+++|+|++    +++++|+++|+++++.++++++.|++++||+++|+++|.+||++||||++||.++..++...
T Consensus         1 mhg~~~~~~~~~~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~   80 (567)
T 1dce_A            1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK   80 (567)
T ss_dssp             CCSCBCSSCSTTSSCCSCCCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc
Confidence            99999999987655    66788999999999999999999999999999999999999999999999999999998866


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC
Q psy13451         77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA  156 (522)
Q Consensus        77 ~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~  156 (522)
                      +++.....+++||++++.+++.+||+|++|+||+|++.++ +..+|++|+++|+++++.||+|||||+||+|++..++..
T Consensus        81 ~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l-~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~  159 (567)
T 1dce_A           81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC
Confidence            6788889999999999999999999999999999999999 445889999999999999999999999999999999955


Q ss_pred             CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCC--CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        157 PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNH--LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       157 ~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~--~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                      +++|+++++++|+.||+|+||||||+.++..+.....++  ..+..+.+++|++++++||+++|+|+|+|+|+||++.+.
T Consensus       160 ~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence            799999999999999999999999999999986654322  234568999999999999999999999999999999999


Q ss_pred             CCcccceecccC-CCceEEEEeccccccccc---ceEeeCCccc-eeee-ecCCCCCcceeeeeccccCC----------
Q psy13451        235 TSPVQIISAGVL-PSGVTFVTFNQLVDLTST---SQIKVDSNVL-MSWT-SLNGASRSFIWVRFLLSLSC----------  298 (522)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~w~-~~~~~~~~~~w~~~L~~f~~----------  298 (522)
                      ++++++.++++. ....|+++|++|+.+++.   +.+..++.+. ++|+ +.+....+.+|+..++.-..          
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~  319 (567)
T 1dce_A          240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR  319 (567)
T ss_dssp             CCCSCEEEEEEETTTTEEEEEEEEEECTTBTTBCEEEEESSSEECCCCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEE
T ss_pred             CCccceeeeeeccCCceEEEEeccceeccccccceEEeecCcccceeeccCCcccccceeEEeecCccccccccccceEE
Confidence            999888877663 333588999999999875   6777777766 9999 77777888888777641100          


Q ss_pred             ------------------------------CC--------------------------CccchhHHHHHHHHHHhhCCCC
Q psy13451        299 ------------------------------PY--------------------------RNYISVALLTSITLLQHLHPGS  322 (522)
Q Consensus       299 ------------------------------~~--------------------------~~~~kw~L~~l~~l~~~i~~~~  322 (522)
                                                    ++                          ..+++|++.++..+....+..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~  399 (567)
T 1dce_A          320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL  399 (567)
T ss_dssp             EEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG
T ss_pred             EeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc
Confidence                                          00                          0125566666665555555555


Q ss_pred             CCChhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccCcCCCCcccEEEecCCCCCC
Q psy13451        323 SDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN  401 (522)
Q Consensus       323 ~~~~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~  401 (522)
                      .  .+..++.+++|+.||+.+.+.+.++.......+.+..++... +.|++++|.|+++|.+..+++|+.|+|++|.++ 
T Consensus       400 ~--~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-  476 (567)
T 1dce_A          400 Y--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-  476 (567)
T ss_dssp             G--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-
T ss_pred             C--CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-
Confidence            5  788889999999998666666666666555545555554444 688888888888888888888888888888888 


Q ss_pred             cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc-cCcccEEEcCCCCCCCCCCCCCCCCCCEEEc
Q psy13451        402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL-CVYFQSLKLTHCSLSSLHVFPHLPSLESLDV  480 (522)
Q Consensus       402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~L  480 (522)
                      .+|..|+.+++|+.|+|++|.|+++|+++.+++|+.|++++|.++++. +.                .++.+++|+.|+|
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~----------------~l~~l~~L~~L~L  540 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ----------------PLVSCPRLVLLNL  540 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG----------------GGGGCTTCCEEEC
T ss_pred             ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcH----------------HHhcCCCCCEEEe
Confidence            778888888888888888888888887777888887777777765542 11                1566788888899


Q ss_pred             cCCCCCCCCh---hhhcCCCCccEEEe
Q psy13451        481 SHNAIDHIED---SVFAKYEACVQVIL  504 (522)
Q Consensus       481 s~N~l~~~~~---~~l~~l~~L~~L~L  504 (522)
                      ++|.+++.++   ..+..+++|+.|++
T Consensus       541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          541 QGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888888753   23445788888864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=2.3e-62  Score=482.17  Aligned_cols=320  Identities=42%  Similarity=0.755  Sum_probs=260.9

Q ss_pred             CCCcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Q psy13451          1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL   76 (522)
Q Consensus         1 mhg~~~~~~~~~~~----~~~~~k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~   76 (522)
                      ||||+|+++|+|++    +++++||++|+.+++.+++.+++|+++++||++|+++|.+||++|||||+||.++..++...
T Consensus         2 mhg~~r~~~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~   81 (331)
T 3dss_A            2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK   81 (331)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc
Confidence            99999999987655    66788999999999999999999999999999999999999999999999999999998866


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC
Q psy13451         77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA  156 (522)
Q Consensus        77 ~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~  156 (522)
                      ++++....+++||.+++.+|..|||+|++|+||+|++..+ +.+.|++|+++|+++++.||+|||||+||+|++..++..
T Consensus        82 ~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~  160 (331)
T 3dss_A           82 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  160 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence            6778888899999999999999999999999999999999 545799999999999999999999999999999999985


Q ss_pred             CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCC--CCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        157 PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNN--HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       157 ~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~--~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                      +++|+++++++|+.||+|+|||+||++++..+......  ....+.+.+++|++++++||+++|+|+|+|+|++|++.+.
T Consensus       161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999654322  1234558999999999999999999999999999999887


Q ss_pred             CCcccceecccCCCceEEEEecccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHH
Q psy13451        235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITL  314 (522)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l  314 (522)
                      ..........+              +       .++++              -.++.++    -+..|+++|++++++.+
T Consensus       241 ~~~~~~~~~~~--------------~-------~l~~e--------------l~~~~el----le~~pd~~w~l~~~~~~  281 (331)
T 3dss_A          241 SGRCELSVEKS--------------T-------VLQSE--------------LESCKEL----QELEPENKWCLLTIILL  281 (331)
T ss_dssp             SCGGGCCHHHH--------------H-------HHHHH--------------HHHHHHH----HHHCTTCHHHHHHHHHH
T ss_pred             cCccccchHHH--------------H-------HHHHH--------------HHHHHHH----HhhCcccchHHHHHHHH
Confidence            43221100000              0       00000              0001111    13457899999999999


Q ss_pred             HHhhCCCCCCChhHHHHhcccccccCccCcchhhchhhhhhhhccccc
Q psy13451        315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQT  362 (522)
Q Consensus       315 ~~~i~~~~~~~~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~  362 (522)
                      ...+++.+.  ..++...+..|..|||.|.++|.++.+.+.+.+.+.+
T Consensus       282 ~~~~~~~~~--~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~~~~~~~  327 (331)
T 3dss_A          282 MRALDPLLY--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK  327 (331)
T ss_dssp             HHHHCTTTT--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccccc--HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHh
Confidence            888887776  7899999999999999999999999999888765544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=1.2e-47  Score=375.63  Aligned_cols=263  Identities=24%  Similarity=0.393  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451         22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMK-ATLAEEELHELVDRELKLTKDCLLAQP  100 (522)
Q Consensus        22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~-~~~~~~~~~~~~~~eL~~~~~~l~~~p  100 (522)
                      ++|+++++.+++.+++|+++++||++|+++|.+||++|||||+||.+|..++ ..         +++||.+++.+|+.||
T Consensus        30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~---------~~eeL~~~~~~L~~nP  100 (306)
T 3dra_A           30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRN---------LYDELDWCEEIALDNE  100 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC---------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc---------HHHHHHHHHHHHHHCc
Confidence            5899999999999999999999999999999999999999999999999998 32         8999999999999999


Q ss_pred             CCccchhhHHHHH----HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCH--HHHHHHHHHHHhcCCc
Q psy13451        101 KSYGTWFQRCYVL----DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--KELNYSTEKIEANFSN  174 (522)
Q Consensus       101 k~y~~W~~R~~il----~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~--~el~~~~~~i~~~~~n  174 (522)
                      |+|++|+||+|++    ..+...+++++|+++|+++++.||||||||+||+|++..++. ++  +|+++++++|+.||+|
T Consensus       101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCC
Confidence            9999999999999    444122689999999999999999999999999999999997 56  9999999999999999


Q ss_pred             chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEE
Q psy13451        175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVT  254 (522)
Q Consensus       175 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  254 (522)
                      |||||||++++..+...      .....+++|+++++++|+++|+|+|+|+|+++++.+.++....           +..
T Consensus       180 ~sAW~~R~~ll~~l~~~------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~-----------~~~  242 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHL------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ-----------LEE  242 (306)
T ss_dssp             HHHHHHHHHHHHSSGGG------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG-----------GHH
T ss_pred             HHHHHHHHHHHHhcccc------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH-----------HHH
Confidence            99999999999988321      1235699999999999999999999999999999998864331           010


Q ss_pred             ec-ccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHHHHhhCCCCCCChhHHHHhc
Q psy13451        255 FN-QLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRF  333 (522)
Q Consensus       255 ~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l~~~i~~~~~~~~~~~l~~l  333 (522)
                      |. +.++++                                    +..+.+.+++..++.....   .+.  ..+.+..|
T Consensus       243 ~~~~~~~~~------------------------------------~~~~~s~~al~~la~~~~~---~~~--~~~A~~~~  281 (306)
T 3dra_A          243 FSLQFVDLE------------------------------------KDQVTSSFALETLAKIYTQ---QKK--YNESRTVY  281 (306)
T ss_dssp             HHHTTEEGG------------------------------------GTEESCHHHHHHHHHHHHH---TTC--HHHHHHHH
T ss_pred             HHHHHHhcc------------------------------------CCCCCCHHHHHHHHHHHHc---cCC--HHHHHHHH
Confidence            11 111100                                    0113466777777766553   233  78899999


Q ss_pred             ccccc-cCccCcchhhchhh
Q psy13451        334 DLLKT-LDPLRLNYYKDSES  352 (522)
Q Consensus       334 ~~L~~-Ldl~~~~~~~~l~~  352 (522)
                      ..|.. +||.+.+++.....
T Consensus       282 ~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          282 DLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHhccChHHHHHHHHHHh
Confidence            99996 89999998875443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=3.9e-45  Score=360.91  Aligned_cols=277  Identities=22%  Similarity=0.337  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC
Q psy13451         22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK  101 (522)
Q Consensus        22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk  101 (522)
                      ++|+.+++.+++.+++++++++||++|+++|.+||++|||||+||.++..++..         +++||.+++.+|+.|||
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~---------l~eEL~~~~~~L~~nPK  121 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS---------LEDELRLMNEFAVQNLK  121 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHhCCC
Confidence            589999999999999999999999999999999999999999999999999853         79999999999999999


Q ss_pred             CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCH--------HHHHHHHHHHHhcCC
Q psy13451        102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--------KELNYSTEKIEANFS  173 (522)
Q Consensus       102 ~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~--------~el~~~~~~i~~~~~  173 (522)
                      +|++|+||+|++..+ ...++++||++|+++++.||||||||+||+|++..++. ++        +|+++++++|+.||+
T Consensus       122 ny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          122 SYQVWHHRLLLLDRI-SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             CHHHHHHHHHHHHHH-CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCC
Confidence            999999999999998 22267999999999999999999999999999999887 44        999999999999999


Q ss_pred             cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc--ceecc-cCCCce
Q psy13451        174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ--IISAG-VLPSGV  250 (522)
Q Consensus       174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~--~~~~~-~~~~~~  250 (522)
                      |+|||+||++++.++...     ......+++|+++++++|+++|+|+|+|+|++|++.+.++...  +...- -.+.. 
T Consensus       200 N~SAW~~R~~lL~~l~~~-----~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~-  273 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGA-----ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK-  273 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTC-----CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred             CHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc-
Confidence            999999999999998542     1234679999999999999999999999999999998876522  10000 00110 


Q ss_pred             EEEEeccccccc-ccceEeeCCccceeeeecCCCCCcceeeeeccccCC-----CCCccchhHHHHHHHHHHhhCCCCCC
Q psy13451        251 TFVTFNQLVDLT-STSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSC-----PYRNYISVALLTSITLLQHLHPGSSD  324 (522)
Q Consensus       251 ~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~-----~~~~~~kw~L~~l~~l~~~i~~~~~~  324 (522)
                              +++. +++.    +                    +...|..     ...+.|.+++..++.+....   +. 
T Consensus       274 --------~~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~---~~-  317 (349)
T 3q7a_A          274 --------LNPDIETVE----A--------------------FGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ---NR-  317 (349)
T ss_dssp             --------------------------------------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT---TC-
T ss_pred             --------ccccchhHH----H--------------------HHHHHHhcccccccCCCcHHHHHHHHHHHHhc---CC-
Confidence                    0000 0000    0                    0000100     11245788998888776542   33 


Q ss_pred             ChhHHHHhccccc-ccCccCcchhhchhh
Q psy13451        325 SNEIILKRFDLLK-TLDPLRLNYYKDSES  352 (522)
Q Consensus       325 ~~~~~l~~l~~L~-~Ldl~~~~~~~~l~~  352 (522)
                       ..+....|..|. ..|+.|.+++.....
T Consensus       318 -~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          318 -VDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             -HHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence             678889999996 899999999876544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=100.00  E-value=2.6e-45  Score=390.88  Aligned_cols=362  Identities=18%  Similarity=0.220  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC----------hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcC
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN----------YEKELELCNYYLELDERNFHCWDYRRYVTDRHK  154 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~----------~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~  154 (522)
                      .++++++|+.+|..||++|++|+|||+++..+   +.          +++|+++++++++.+||||+||+||+|++..++
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l---~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHL---ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhc---ccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            37789999999999999999999999999999   44          999999999999999999999999999999998


Q ss_pred             CC-CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh-HHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451        155 VA-PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD-KYVNEFSMVESAVFTEPKDQSAWFYQRWLLG  232 (522)
Q Consensus       155 ~~-~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~-~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~  232 (522)
                      .. +++|+++++++++.||+||+||+||++++..+            + .+++|+++++++|..+|+|+|||+|+++++.
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l------------~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~  189 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQA------------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  189 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc------------CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence            42 59999999999999999999999999999998            4 6899999999999999999999999999998


Q ss_pred             cCCCccccee-----cccCCCceEEEEecccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCc-cc--
Q psy13451        233 ERTSPVQIIS-----AGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRN-YI--  304 (522)
Q Consensus       233 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~-~~--  304 (522)
                      ...+......     ....+ . ++..+.+++.++|                  .....|.+.+++..-.+.... .+  
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~-e-el~~~~~ai~~~P------------------~~~saW~y~~~ll~~~~~~~~~~~~~  249 (567)
T 1dce_A          190 QLHPQPDSGPQGRLPENVLL-K-ELELVQNAFFTDP------------------NDQSAWFYHRWLLGRAEPHDVLCCVH  249 (567)
T ss_dssp             HHSCCCCSSSCCSSCHHHHH-H-HHHHHHHHHHHCS------------------SCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred             hhcccccccccccccHHHHH-H-HHHHHHHHHhhCC------------------CCccHHHHHHHHHhcCCCccceeeee
Confidence            7543311000     00000 0 2233444444443                  223334443333211110000 00  


Q ss_pred             -----hhHHHHHHHHHHhhCCCC---------------CC----------------ChhH--------------------
Q psy13451        305 -----SVALLTSITLLQHLHPGS---------------SD----------------SNEI--------------------  328 (522)
Q Consensus       305 -----kw~L~~l~~l~~~i~~~~---------------~~----------------~~~~--------------------  328 (522)
                           ..++..+-.. -.+.+..               ..                ..+.                    
T Consensus       250 ~~~~~~~~~~~f~~~-i~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (567)
T 1dce_A          250 VSREEACLSVCFSRP-LTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQ  328 (567)
T ss_dssp             EETTTTEEEEEEEEE-ECTTBTTBCEEEEESSSEECCCCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEE
T ss_pred             eccCCceEEEEeccc-eeccccccceEEeecCcccceeeccCCcccccceeEEeecCccccccccccceEEEeeccCCCC
Confidence                 0000000000 0000000               00                0000                    


Q ss_pred             ------------H---HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEE
Q psy13451        329 ------------I---LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQV  392 (522)
Q Consensus       329 ------------~---l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L  392 (522)
                                  .   +..++.|                               +.|++++|.|+.+|. ++.+++|+.|
T Consensus       329 ~~~~~~~~~~~~~~~d~~~~~~L-------------------------------~~L~Ls~n~L~~Lp~~i~~l~~L~~L  377 (567)
T 1dce_A          329 KECVLLKDRPECWCRDSATDEQL-------------------------------FRCELSVEKSTVLQSELESCKELQEL  377 (567)
T ss_dssp             EEEEEETTCSEEEEECCSTTTTS-------------------------------SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCchhhhcccccCccc-------------------------------eeccCChhhHHhhHHHHHHHHHHHHh
Confidence                        0   0112233                               345555555555554 5555555555


Q ss_pred             EecCCC-------------CCCcccccCCC--------------------------------CCCccEEEcCCCCCCCCC
Q psy13451        393 DLSNNP-------------LTNNCLRHLTP--------------------------------LVACESLKLTHCSLSSLH  427 (522)
Q Consensus       393 ~Ls~n~-------------l~~~~~~~~~~--------------------------------l~~L~~L~l~~n~l~~~~  427 (522)
                      ++++|.             +.+..|..++.                                ...|+.|++++|.|+++|
T Consensus       378 ~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp  457 (567)
T 1dce_A          378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC  457 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC
T ss_pred             ccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCc
Confidence            554432             22222211110                                125789999999999999


Q ss_pred             CCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccE
Q psy13451        428 VFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQ  501 (522)
Q Consensus       428 ~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~  501 (522)
                      .++.+++|+.|++++|.++.+|     +++|+.|+|++|.|++++.++.+++|+.|+|++|.|++++ +..++.+++|+.
T Consensus       458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            9999999999999999999876     5789999999999999888999999999999999999996 789999999999


Q ss_pred             EEecCCCCcccc
Q psy13451        502 VILTGNPVSADM  513 (522)
Q Consensus       502 L~L~~N~l~~~~  513 (522)
                      |+|++|++++..
T Consensus       538 L~L~~N~l~~~~  549 (567)
T 1dce_A          538 LNLQGNSLCQEE  549 (567)
T ss_dssp             EECTTSGGGGSS
T ss_pred             EEecCCcCCCCc
Confidence            999999998653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.98  E-value=2.3e-32  Score=267.46  Aligned_cols=205  Identities=20%  Similarity=0.249  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC
Q psy13451         23 WYHNLMETIFEKRKNQ-EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK  101 (522)
Q Consensus        23 ~y~~~~~~~~~~~~~~-~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk  101 (522)
                      -|..+..+-..+..-+ ..-+++|++++.+|.+||++|++|++||.++.++......   ...+++||.+++++|+.+||
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~---~~~~~~EL~~~~~~l~~~pk  142 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN---DFDPYREFDILEAMLSSDPK  142 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT---CCCTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc---cCCHHHHHHHHHHHHHhCCC
Confidence            3445555555555556 4558899999999999999999999999999443211000   00168999999999999999


Q ss_pred             CccchhhHHHHHHHhcCCCChH--HHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC-----CHHHHHHHHHHHHhcCCc
Q psy13451        102 SYGTWFQRCYVLDHISRAPNYE--KELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----PLKELNYSTEKIEANFSN  174 (522)
Q Consensus       102 ~y~~W~~R~~il~~l~~~~~~~--~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~-----~~~el~~~~~~i~~~~~n  174 (522)
                      +|++|+||+|++.++   +.++  +|+++|+++++.||+|||||+||+|++..++..     +++|+++++++|..||+|
T Consensus       143 ny~aW~~R~~vl~~l---~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          143 NHHVWSYRKWLVDTF---DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             CHHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CHHHHHHHHHHHHHh---cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999   6667  999999999999999999999999999998752     689999999999999999


Q ss_pred             chHhhHHHHHhchhCCCCCCC-------Cc-------------------cchhHHHHHHHHHHHHHh-cCCCCcchhhHH
Q psy13451        175 YSAWHYRSKLLPLLYPDPNNH-------LP-------------------IEQDKYVNEFSMVESAVF-TEPKDQSAWFYQ  227 (522)
Q Consensus       175 ~saW~~r~~ll~~l~~~~~~~-------~~-------------------~~~~~~~~el~~~~~ai~-~~p~~~s~W~y~  227 (522)
                      +|||+||++++..+....++.       ..                   ...+..++++++++.+.. .||-+...|.|+
T Consensus       220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~  299 (306)
T 3dra_A          220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ  299 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence            999999999998875432110       00                   012466789999999997 799999999999


Q ss_pred             HHHhcc
Q psy13451        228 RWLLGE  233 (522)
Q Consensus       228 ~~ll~~  233 (522)
                      +..|..
T Consensus       300 ~~~l~~  305 (306)
T 3dra_A          300 ISKLTS  305 (306)
T ss_dssp             HHTCC-
T ss_pred             Hhhccc
Confidence            887653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.97  E-value=3e-31  Score=261.75  Aligned_cols=168  Identities=20%  Similarity=0.386  Sum_probs=152.2

Q ss_pred             HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC-ChHHHHHHHH
Q psy13451         52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP-NYEKELELCN  130 (522)
Q Consensus        52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~-~~~~el~~~~  130 (522)
                      |..+|++.++|+++|.++.+.+.+          +++|++|+.+|..||++|++|++|++++..+   + .+++||++++
T Consensus        47 i~y~~~y~~~~~~~r~~~~~~e~s----------e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l---~~~l~eEL~~~~  113 (349)
T 3q7a_A           47 IMYSEEYKDAMDYFRAIAAKEEKS----------ERALELTEIIVRMNPAHYTVWQYRFSLLTSL---NKSLEDELRLMN  113 (349)
T ss_dssp             BCCCHHHHHHHHHHHHHHHTTCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred             eeeCHHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence            457889999999999999998774          7999999999999999999999999999999   5 6999999999


Q ss_pred             HHHhhcCCCcchhhHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHH
Q psy13451        131 YYLELDERNFHCWDYRRYVTDRH-KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSM  209 (522)
Q Consensus       131 ~~l~~d~kn~~aW~~R~~~l~~~-~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~  209 (522)
                      ++|..+||||++|+||+|++..+ +..+++|+++++++++.||+||+||+||++++..+....    ......+++|+++
T Consensus       114 ~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~----~~~~~~~~eELe~  189 (349)
T 3q7a_A          114 EFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG----RISEAQWGSELDW  189 (349)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc----ccchhhHHHHHHH
Confidence            99999999999999999999998 624799999999999999999999999999999984322    1123556699999


Q ss_pred             HHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451        210 VESAVFTEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       210 ~~~ai~~~p~~~s~W~y~~~ll~~~~~  236 (522)
                      ++++|..||.|.|||+||++++.+.++
T Consensus       190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          190 CNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999999998875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.96  E-value=3.5e-29  Score=246.14  Aligned_cols=176  Identities=21%  Similarity=0.293  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      +++|.+++.+|..||++|+||++|+.++..++...        +++||.++++++..+|++|.||+||+|++..+   +.
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~--------~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l---~~  159 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQA---AV  159 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---Cc
Confidence            67899999999999999999999999999987521        68999999999999999999999999999999   55


Q ss_pred             -hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC-------------CCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451        122 -YEKELELCNYYLELDERNFHCWDYRRYVTDRHKV-------------APLKELNYSTEKIEANFSNYSAWHYRSKLLPL  187 (522)
Q Consensus       122 -~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~-------------~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~  187 (522)
                       +++|+++++++++.||+|++||+||++++..+..             .+++|+++++++|..+|.|.|||+|+++++..
T Consensus       160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence             6999999999999999999999999999998821             25799999999999999999999999999887


Q ss_pred             hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                      ......- .....+.+++|++++++++..+|++  .|.+...++
T Consensus       240 ~~~~~~~-~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~  280 (331)
T 3dss_A          240 GSGRCEL-SVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL  280 (331)
T ss_dssp             SSCGGGC-CHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             ccCcccc-chHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence            6332110 1223378999999999999999987  999887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=3.2e-27  Score=239.57  Aligned_cols=263  Identities=18%  Similarity=0.342  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451         23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS  102 (522)
Q Consensus        23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~  102 (522)
                      .+..++.............++|+..++++|.+||+++++|++|+.++..++++         +++|+.+++++|..+|++
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d---------~~eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD---------LHEEMNYITAIIEEQPKN  165 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC---------HHHHHHHHHHHHHHCCCC
Confidence            34555555555566666679999999999999999999999999999999853         599999999999999999


Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      +.+|++|++++..+   +++++++.++++++++||+|+++|.+|++++..++. +++++++++++|+.||+|.+||++|+
T Consensus       166 ~~a~~~~g~~~~~~---g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          166 YQVWHHRRVLVEWL---RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             HHHHHHHHHHHHHH---TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999   889999999999999999999999999999999998 79999999999999999999999999


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC--cccceecccCCCceEEEEeccccc
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS--PVQIISAGVLPSGVTFVTFNQLVD  260 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  260 (522)
                      .++..+...      ..+..+++|++++++|+.++|+|.++|+|+++++...+.  ....           +..+.    
T Consensus       242 ~~l~~l~~~------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a-----------~~~~~----  300 (382)
T 2h6f_A          242 FVISNTTGY------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL-----------LNQLL----  300 (382)
T ss_dssp             HHHHHTTCS------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH-----------HHHHH----
T ss_pred             HHHHHhcCc------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH-----------HHHHH----
Confidence            999985332      123457888999999999999999999999999988652  2211           00000    


Q ss_pred             ccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHHHHhhCCC---C-CCChhHHHHhcccc
Q psy13451        261 LTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPG---S-SDSNEIILKRFDLL  336 (522)
Q Consensus       261 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l~~~i~~~---~-~~~~~~~l~~l~~L  336 (522)
                                                        ..  +..+++.|++..+..+.......   . .+...+.+..+..+
T Consensus       301 ----------------------------------~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          301 ----------------------------------DL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             ----------------------------------HH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------Hh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence                                              00  22355778888877666543100   0 00147788999999


Q ss_pred             -cccCccCcchhhchhhhhh
Q psy13451        337 -KTLDPLRLNYYKDSESKYK  355 (522)
Q Consensus       337 -~~Ldl~~~~~~~~l~~~~~  355 (522)
                       ..+|+.+..+|......+.
T Consensus       345 ~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          345 AKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHH
Confidence             8999999999987766544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.86  E-value=7.6e-22  Score=199.99  Aligned_cols=160  Identities=20%  Similarity=0.442  Sum_probs=152.6

Q ss_pred             HHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC-hHHHHHH
Q psy13451         50 EVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN-YEKELEL  128 (522)
Q Consensus        50 ~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~-~~~el~~  128 (522)
                      .+|.++|++..+|++++.++...+.          +++++..++++|+.+|+++.+|++|+.++..+   +. +++++.+
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g~----------~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~---g~d~~eAl~~  154 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDER----------SERAFKLTRDAIELNAANYTVWHFRRVLLKSL---QKDLHEEMNY  154 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc---ccCHHHHHHH
Confidence            4678999999999999999999887          69999999999999999999999999999999   75 9999999


Q ss_pred             HHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHH
Q psy13451        129 CNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFS  208 (522)
Q Consensus       129 ~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~  208 (522)
                      ++++++++|+++.+|++|++++..++. +++++++++++|+.||+|+.||++|++++..+            +.++++++
T Consensus       155 ~~~al~l~P~~~~a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~------------g~~~eAl~  221 (382)
T 2h6f_A          155 ITAIIEEQPKNYQVWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEF------------KLWDNELQ  221 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCCTTHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------------CChHHHHH
Confidence            999999999999999999999999998 79999999999999999999999999999999            77889999


Q ss_pred             HHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        209 MVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       209 ~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                      +++++|.++|+|.++|++++.++....
T Consensus       222 ~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          222 YVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999998843

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=1.9e-19  Score=175.26  Aligned_cols=183  Identities=19%  Similarity=0.156  Sum_probs=156.3

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCC-cccccC--cCCCCcccEEEecCCCCCCc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ-LTSIHH--MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~-l~~l~~--~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      ++..+..+++|+.|++.++......+..+..   ++.+    +.|++++|. ++.++.  +..+++|+.|++++|.+++.
T Consensus        48 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L----~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  120 (285)
T 1ozn_A           48 PAASFRACRNLTILWLHSNVLARIDAAAFTG---LALL----EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL  120 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTT---CTTC----CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CHHHcccCCCCCEEECCCCccceeCHhhcCC---ccCC----CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE
Confidence            3455688999999999988665433332221   1222    699999997 888744  88999999999999999987


Q ss_pred             ccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451        403 CLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL  472 (522)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~  472 (522)
                      .|..|..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++      +++|+.|++++|.++++.+  +..+
T Consensus       121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence            7888999999999999999999986  3889999999999999998765      4789999999999999854  8899


Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       473 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|+.|++++|.++++++..+..+++|+.|++++|++.|+|..
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            9999999999999999988899999999999999999999865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=4.4e-19  Score=171.38  Aligned_cols=174  Identities=19%  Similarity=0.245  Sum_probs=148.5

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      ++|+.|++.++.........+.   .+..+    +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~---~l~~L----~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFH---RLTKL----RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSS---SCTTC----CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCCCEEECcCCCCCeeCHHHhc---CCCCC----CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            5688899888765432221111   11122    699999999999887  68899999999999999976667789999


Q ss_pred             CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEcc
Q psy13451        412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVS  481 (522)
Q Consensus       412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls  481 (522)
                      +|+.|++++|.++.++  .|..+++|+.|++++|.++.++      +++|+.|++++|.++.+++  +..+++|+.|+|+
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            9999999999999986  3789999999999999998765      4789999999999999886  8889999999999


Q ss_pred             CCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        482 HNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       482 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +|.++.+++..+..+++|+.|+|++|++.|+|.
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999998889999999999999999999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.1e-18  Score=166.58  Aligned_cols=145  Identities=23%  Similarity=0.345  Sum_probs=135.0

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|+++.++.  +..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence            799999999999765  889999999999999999888888999999999999999999986  4789999999999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      .++.++      .++|+.|+|++|.|+.+++  +..+++|+.|+|++|.++.+++..+..+++|+.|+|++|+++|+
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            998765      4789999999999999886  88999999999999999999988899999999999999999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=9.8e-19  Score=169.11  Aligned_cols=177  Identities=19%  Similarity=0.251  Sum_probs=152.7

Q ss_pred             HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451        329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      ....+++|+.|++.++.... +.. +   ..++.+    +.|++++|.+++++.+..+++|+.|++++|.+++..+..|.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-~~~-l---~~l~~L----~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS-VQG-I---QYLPNV----RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC-CTT-G---GGCTTC----CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             ccccccceeeeeeCCCCccc-ccc-c---ccCCCC----cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc
Confidence            35778899999988766432 111 1   112222    69999999999998899999999999999999977777789


Q ss_pred             CCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEE
Q psy13451        409 PLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESL  478 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L  478 (522)
                      .+++|+.|++++|.++.++.  +..+++|+.|++++|.++.++      +++|+.|++++|.++++++  +..+++|+.|
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            99999999999999999864  789999999999999998765      4689999999999999887  7899999999


Q ss_pred             EccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        479 DVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       479 ~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++++|.++++++..++.+++|+.|++++|++.|.|.
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            999999999998889999999999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=4.5e-19  Score=183.66  Aligned_cols=182  Identities=18%  Similarity=0.250  Sum_probs=144.1

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCC-CCCCcc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNN-PLTNNC  403 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n-~l~~~~  403 (522)
                      +..+..+++|+.|+++++.........+.   .+..+    +.|++++|.++.++.  +..+++|+.|++++| .++...
T Consensus       105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L----~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          105 IGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKL----KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             GGGGTTCSSCCEEECCSSCCSSCCTTTSC---SCSSC----CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             hhhccCCccCCEEECCCCcCCeeCHhHhh---ccccC----ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            34556667777777666544321111111   11111    588888888888766  778888888888884 444333


Q ss_pred             cccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCC
Q psy13451        404 LRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSL  475 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L  475 (522)
                      +..|.++++|+.|++++|.++.+|.+..+++|+.|++++|.++.++      +++|+.|++++|.|+.+++  +..+++|
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            4468889999999999999999999999999999999999998764      4788999999999999875  8899999


Q ss_pred             CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       476 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      +.|+|++|.|+.++...|..+++|+.|+|++|++.|+|..
T Consensus       258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999999988999999999999999999999964

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.9e-18  Score=168.70  Aligned_cols=173  Identities=21%  Similarity=0.167  Sum_probs=147.4

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCc
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC  413 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  413 (522)
                      ++++.|+++++......+..+..   +..+    +.|++++|.|+.++....+++|+.|++++|.++ .+|..+..+++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMP---YTRL----TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL  102 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTT---CTTC----CEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhc---CCCC----CEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCC
Confidence            57888998888765543332222   2222    699999999999888788999999999999998 788889999999


Q ss_pred             cEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCC
Q psy13451        414 ESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHN  483 (522)
Q Consensus       414 ~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N  483 (522)
                      +.|++++|+++.++  .|..+++|+.|++++|.++.++      .++|+.|+|++|.|+.++.  +..+++|+.|+|++|
T Consensus       103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence            99999999999986  4899999999999999998766      3689999999999999886  788999999999999


Q ss_pred             CCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        484 AIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       484 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      .|+.++. .+..+++|+.|+|++|++.|+|..
T Consensus       183 ~l~~ip~-~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          183 SLYTIPK-GFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCCCCCT-TTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCCccCh-hhcccccCCeEEeCCCCccCcCcc
Confidence            9999885 455677999999999999999843

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=7.4e-19  Score=182.73  Aligned_cols=181  Identities=19%  Similarity=0.233  Sum_probs=139.2

Q ss_pred             HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCC-CCCCccc
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNN-PLTNNCL  404 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~  404 (522)
                      ..+..+++|+.|+++++.........+.   .+..+    +.|++++|.++.++.  +..+++|+.|++++| .+....+
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKL----RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCTTTSS---SCTTC----CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             hhccCcccCCEEECCCCcCCccChhhhc---ccCCC----CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            3445566666666655543321111111   01111    577777777777665  677777777777773 4443333


Q ss_pred             ccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCC
Q psy13451        405 RHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLE  476 (522)
Q Consensus       405 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~  476 (522)
                      ..|.++++|+.|++++|.++.+|.+..+++|+.|++++|.++.+.      +++|+.|++++|.++.+++  +..+++|+
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            468888999999999999999999999999999999999998764      4789999999999998865  88999999


Q ss_pred             EEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       477 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      .|+|++|.|+.++...+..+++|+.|+|++|++.|+|..
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            999999999999988899999999999999999999965

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2e-18  Score=161.43  Aligned_cols=147  Identities=23%  Similarity=0.279  Sum_probs=130.8

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC--CCCCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++++++.+|. .-.++++.|++++|.+++..+..|..+++|+.|++++|.|+.+  ..|..+++|+.|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            578999999999987 1237899999999999976667899999999999999999987  3688999999999999999


Q ss_pred             Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      +.++      .++|+.|+|++|.|+.+++  +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.+
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            8766      4678999999999999865  88999999999999999999988899999999999999999999865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3e-18  Score=161.27  Aligned_cols=146  Identities=21%  Similarity=0.277  Sum_probs=133.5

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++++++.+|. ...++|+.|+|++|.+++..|..|..+++|+.|++++|.|+.++.  |..+++|+.|++++|.+
T Consensus        22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            589999999999997 234899999999999998888899999999999999999999863  78999999999999999


Q ss_pred             Cccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        446 NIIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +.++      .++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++...+..+++|+.|+|++|++.|+|.
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8765      4788999999999999876 8889999999999999999998889999999999999999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=2.2e-18  Score=166.95  Aligned_cols=180  Identities=19%  Similarity=0.239  Sum_probs=147.9

Q ss_pred             HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccc
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLR  405 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~  405 (522)
                      ..+..+++|+.|+++++.........+..   +..+    +.|++++|.++.++.  +..+++|+.|++++|.+++..+.
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  118 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQS---LSHL----STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF  118 (276)
T ss_dssp             TTTTTCTTCSEEECTTCCCCEECTTTTTT---CTTC----CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred             hHhccccCCcEEECCCCcCCccCHHHccC---CcCC----CEEECCCCccCccChhhhcCCccccEEECCCCCccccCch
Confidence            35678899999999888654332222211   1222    699999999999764  88999999999999999976666


Q ss_pred             cCCCCCCccEEEcCCCCCCCC--C-CCCCCCCcCEEEccCCCCCcccc------Cccc----EEEcCCCCCCCCCC-CCC
Q psy13451        406 HLTPLVACESLKLTHCSLSSL--H-VFPHLPSLESLDVSHNAPNIILC------VYFQ----SLKLTHCSLSSLHV-FPH  471 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~ls~N~l~~~~~------~~L~----~L~Ls~n~l~~~~~-l~~  471 (522)
                      .+..+++|+.|++++|.++.+  | .+..+++|+.|++++|.++.++.      ..++    .|++++|.++.+++ ...
T Consensus       119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence            799999999999999999873  4 58889999999999999987753      3344    89999999999876 444


Q ss_pred             CCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        472 LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       472 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ..+|+.|+|++|.++.+++..+..+++|+.|++++|++.|+|.
T Consensus       199 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            4589999999999999998888999999999999999999984

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.9e-18  Score=157.73  Aligned_cols=147  Identities=16%  Similarity=0.222  Sum_probs=130.1

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCccc-ccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCL-RHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~  444 (522)
                      +.+++++|.++.+|. .-...++.|+|++|.+++..+ ..|..+++|+.|++++|.|+.++  .|..+++|+.|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            589999999999987 224567899999999996644 45789999999999999999875  58999999999999999


Q ss_pred             CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        445 PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       445 l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++.++      +++|+.|+|++|.|+.+++  +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|..
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            98765      4789999999999999865  88999999999999999999888999999999999999999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=2.4e-18  Score=171.03  Aligned_cols=181  Identities=14%  Similarity=0.113  Sum_probs=143.8

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL  404 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~  404 (522)
                      .+..+..+++|+.|++.++.+. .++..+..   +..+    ++|++++|.++.+|. +..+++|+.|++++|.+.+.+|
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~---l~~L----~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ---FAGL----ETLTLARNPLRALPASIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG---GTTC----SEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred             cChhhhhCCCCCEEECCCCCcc-chhHHHhc---cCCC----CEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence            3444567889999998887765 44433322   2222    589999999998887 8889999999999988888888


Q ss_pred             ccCCC---------CCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-
Q psy13451        405 RHLTP---------LVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-  468 (522)
Q Consensus       405 ~~~~~---------l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-  468 (522)
                      ..+..         +++|+.|++++|.++.+| .+..+++|+.|++++|.++.++     +++|+.|++++|.+.+..+ 
T Consensus       168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence            77654         889999999999998876 5788889999999999988765     4788999999988766543 


Q ss_pred             -CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        469 -FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       469 -l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                       +..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|++.....
T Consensus       248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence             7888999999999988777666778899999999999988776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=1.3e-17  Score=177.55  Aligned_cols=183  Identities=18%  Similarity=0.176  Sum_probs=155.5

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC----cCCCCcccEEEecCCCCCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH----MHCFAHCKQVDLSNNPLTN  401 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~----~~~l~~L~~L~Ls~n~l~~  401 (522)
                      +...+..+++|+.||++++...+..+........++.+    +.|++++|.++.++.    +..+++|+.|++++|.++ 
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  400 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-  400 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC----CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred             CHHHHhcCccccEEEccCCccccccccchhhhhccccC----cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence            44555789999999999998877554322111122222    599999999998763    888999999999999999 


Q ss_pred             cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEE
Q psy13451        402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLD  479 (522)
Q Consensus       402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~  479 (522)
                      .+|..+..+++|+.|++++|.++.++... .++|+.|++++|.+++++  +++|+.|++++|.|+.++....+++|+.|+
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~  479 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMK  479 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEE
T ss_pred             cCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEe
Confidence            78888999999999999999999887422 368999999999998775  689999999999999988877789999999


Q ss_pred             ccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      |++|.++++++..+..+++|+.|++++|++.|+|.
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99999999998889999999999999999999985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=6.4e-18  Score=166.17  Aligned_cols=181  Identities=20%  Similarity=0.168  Sum_probs=148.5

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      +..+..+++|+.|+++++.... ++..+.   .+..+    +.|++++|.++.++.   +..+++|+.|++++|.+++..
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~---~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVIT-MSSNFL---GLEQL----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEEE-EEEEEE---TCTTC----CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             ccccccccccCEEECCCCcccc-ChhhcC---CCCCC----CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            3555667888888877765442 211111   11222    699999999998753   788999999999999999888


Q ss_pred             cccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451        404 LRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL  472 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~  472 (522)
                      +..|..+++|+.|++++|.++.  +| .+..+++|+.|++++|.++.++      .++|+.|++++|.++++++  +..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            8889999999999999999886  44 6889999999999999998764      4789999999999999876  7889


Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCC-CccEEEecCCCCcccccc
Q psy13451        473 PSLESLDVSHNAIDHIEDSVFAKYE-ACVQVILTGNPVSADMVV  515 (522)
Q Consensus       473 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|+.|+|++|.+++.++..+..++ +|+.|+|++|+++|+|..
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            9999999999999998888888885 999999999999999853

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=171.37  Aligned_cols=181  Identities=20%  Similarity=0.217  Sum_probs=152.3

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      .+..+..+++|+.|+++++.........+..   +..+    +.|++++|.|+.++.  +..+++|+.|+|++|.++...
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  152 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNG---LANL----NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP  152 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSCCCEECGGGGTT---CSSC----CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC
T ss_pred             CHHHhhCCCCCCEEECCCCcCCccChhhccC---CccC----CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC
Confidence            3455688999999999988765433332221   2222    699999999999876  889999999999999999666


Q ss_pred             cccCCCCCCccEEEcCCC-CCCCCC--CCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCC
Q psy13451        404 LRHLTPLVACESLKLTHC-SLSSLH--VFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPS  474 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~  474 (522)
                      +..|..+++|+.|++++| .++.++  .|..+++|+.|++++|.++.++    .++|+.|+|++|.|+++++  +..+++
T Consensus       153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCcc
Confidence            678999999999999985 566665  4889999999999999999876    5789999999999999865  899999


Q ss_pred             CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      |+.|+|++|.|+.+++..|..+++|+.|+|++|.++...
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            999999999999999889999999999999999998554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=1.2e-16  Score=154.13  Aligned_cols=146  Identities=24%  Similarity=0.286  Sum_probs=132.7

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.++...+..|..+++|++|++++|.++.++  .+..+++|+.|++++|
T Consensus        40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred             CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence            799999999999875  889999999999999999665666789999999999999999986  4788999999999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .++.++      +++|+.|++++|.++.+++  +..+++|+.|+|++|.++.+++..|..+++|+.|+|++|+++...
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            998765      4789999999999999886  889999999999999999999888999999999999999987544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.3e-17  Score=164.34  Aligned_cols=171  Identities=16%  Similarity=0.211  Sum_probs=129.0

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      +..+++|+.|+++++.......  +   ..+..+    +.|++++|.++.++.+..+++|+.|++++|.+++ ++. +..
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~--~---~~l~~L----~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~  127 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP--L---KNLTKI----TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD-VTP-LAG  127 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--G---TTCCSC----CEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred             hhccCCCCEEEccCCcCCCChh--H---ccCCCC----CEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence            4667778888877765443211  1   112222    5888888888888777788888888888888874 343 778


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      +++|+.|++++|.++.++.+..+++|+.|++++|.++.++    +++|+.|++++|.+++++++..+++|+.|+|++|.+
T Consensus       128 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCcc
Confidence            8888888888888888777778888888888888887655    477888888888888877777888888888888888


Q ss_pred             CCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        486 DHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++++  .+..+++|+.|++++|++++..
T Consensus       208 ~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          208 SDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             Cccc--cccCCCCCCEEEccCCeeecCC
Confidence            8876  3778888888888888887633

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.7e-17  Score=162.06  Aligned_cols=173  Identities=19%  Similarity=0.216  Sum_probs=147.9

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      ...+++|+.|++.++....- +. +   ..++.+    +.|++++|.+++++.+..+++|+.|++++|.+++ ++ .+..
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~~-~---~~l~~L----~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-QG-I---QYLPNV----TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TT-G---GGCTTC----CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             hhhcCcccEEEccCCCcccC-hh-H---hcCCCC----CEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence            46789999999888765432 11 1   112222    6999999999998889999999999999999984 44 4899


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      +++|+.|++++|.++.++.+..+++|+.|++++|.++.++    +++|+.|++++|.+++++++..+++|+.|+|++|.|
T Consensus       111 l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence            9999999999999999998999999999999999998765    588999999999999988899999999999999999


Q ss_pred             CCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        486 DHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++++  .+..+++|+.|++++|+++.....
T Consensus       191 ~~l~--~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             CBCG--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             CCCh--hhccCCCCCEEECcCCcccCCccc
Confidence            9985  489999999999999998765543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=5.3e-17  Score=158.34  Aligned_cols=169  Identities=22%  Similarity=0.248  Sum_probs=142.4

Q ss_pred             HhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCC
Q psy13451        331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      +.+++++.++..++.... ++.         .+....+.|++++|.++.++.  +..+++|+.|++++|.+++ ++. ..
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~---------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~   74 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPP---------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DG   74 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCS---------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CS
T ss_pred             cccCCccEEECCCCCCCc-CCC---------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CC
Confidence            567788888887755432 111         111112799999999999754  8999999999999999984 444 37


Q ss_pred             CCCCccEEEcCCCCCCCCCC-CCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451        409 PLVACESLKLTHCSLSSLHV-FPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD  479 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~  479 (522)
                      .+++|+.|++++|.++.+|. +..+++|+.|++++|+++.++      .++|+.|++++|.|+.+++  +..+++|+.|+
T Consensus        75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            89999999999999999874 788999999999999998776      4689999999999999886  78899999999


Q ss_pred             ccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      |++|.|+.++...|..+++|+.|+|++|+++.
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence            99999999998889999999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=5e-17  Score=158.07  Aligned_cols=174  Identities=23%  Similarity=0.221  Sum_probs=146.8

Q ss_pred             cccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccccc-C-cCCCCcccEEEecCCC-CCCcccccCCC
Q psy13451        333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIH-H-MHCFAHCKQVDLSNNP-LTNNCLRHLTP  409 (522)
Q Consensus       333 l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~-~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~  409 (522)
                      .++|+.|++.++.........+..   +..+    +.|++++|.++.++ . +..+++|+.|++++|. ++...|..|..
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~---~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRA---CRNL----TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTT---CTTC----CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHccc---CCCC----CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            468899998887665432222211   1222    69999999999974 3 8899999999999997 88666888999


Q ss_pred             CCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451        410 LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD  479 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~  479 (522)
                      +++|+.|++++|.++.++  .+..+++|+.|++++|.++.++      +++|+.|++++|.++.+++  +..+++|+.|+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            999999999999999874  4888999999999999998765      4689999999999999876  88899999999


Q ss_pred             ccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +++|.++++.+..+..+++|+.|++++|.++...
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            9999999998889999999999999999998644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=2.2e-17  Score=171.61  Aligned_cols=181  Identities=18%  Similarity=0.185  Sum_probs=148.2

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      .+..+..+++|+.|+++++......+..+..   +..+    +.|++++|.|+.++.  +..+++|+.|+|++|.++...
T Consensus        91 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (452)
T 3zyi_A           91 QADTFRHLHHLEVLQLGRNSIRQIEVGAFNG---LASL----NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP  163 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTT---CTTC----CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred             CHHHcCCCCCCCEEECCCCccCCcChhhccC---cccC----CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence            3455688899999999887665433332221   1222    589999999999876  888999999999999998666


Q ss_pred             cccCCCCCCccEEEcCCC-CCCCCC--CCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCC
Q psy13451        404 LRHLTPLVACESLKLTHC-SLSSLH--VFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPS  474 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~  474 (522)
                      +..|..+++|+.|++++| .+..++  .|..+++|+.|++++|.++.++    +++|+.|+|++|.|+++++  +..+++
T Consensus       164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  243 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS  243 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred             HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccC
Confidence            668889999999999984 666665  4888999999999999998776    5789999999999998865  888999


Q ss_pred             CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      |+.|+|++|.++.+++..|..+++|+.|+|++|.++...
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            999999999999998888999999999999999987544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.7e-17  Score=167.12  Aligned_cols=148  Identities=24%  Similarity=0.308  Sum_probs=132.7

Q ss_pred             cEEEecCCCcccccC--cC-CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLTSIHH--MH-CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.|+.++.  +. .+++|+.|+|++|.+++..+..|..+++|+.|+|++|.|+.++  .|..+++|+.|+|++
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence            799999999999876  65 8999999999999999777788999999999999999999976  488999999999999


Q ss_pred             CCCCccc------cCcccEEEcCCCCCCCCCC--C---CCCCCCCEEEccCCCCCCCChhhhcCCCC--ccEEEecCCCC
Q psy13451        443 NAPNIIL------CVYFQSLKLTHCSLSSLHV--F---PHLPSLESLDVSHNAIDHIEDSVFAKYEA--CVQVILTGNPV  509 (522)
Q Consensus       443 N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l---~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~L~~N~l  509 (522)
                      |.++.++      +++|+.|+|++|.|+.++.  +   ..+++|+.|+|++|.|+.++...+..++.  ++.|+|++|++
T Consensus       122 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            9998764      4789999999999999876  4   57899999999999999999888888887  48899999999


Q ss_pred             cccccc
Q psy13451        510 SADMVV  515 (522)
Q Consensus       510 ~~~~~~  515 (522)
                      .|+|.+
T Consensus       202 ~C~C~l  207 (361)
T 2xot_A          202 ECDCKL  207 (361)
T ss_dssp             ECCHHH
T ss_pred             cCCcCc
Confidence            999954

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.7e-16  Score=146.79  Aligned_cols=146  Identities=25%  Similarity=0.263  Sum_probs=125.2

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++++++.+|. ...++|+.|++++|.+++..+..|..+++|+.|++++|.++.++.  |..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            578888899988886 335689999999999986666678889999999999999998763  68889999999999998


Q ss_pred             Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +.++      .++|+.|++++|.|+.+++  +..+++|+.|+|++|.++++++..+..+++|+.|++++|++.|++.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            8665      4678999999999998876  7889999999999999999888788999999999999999998774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.5e-17  Score=158.34  Aligned_cols=141  Identities=23%  Similarity=0.272  Sum_probs=109.3

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|+++.++.+..+++|+.|++++|.+++. +. +..+++|+.|++++|.++.++.+.. ++|+.|++++|.++.
T Consensus        44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB
T ss_pred             cEEECcCCCcccchHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC
Confidence            47788888888777777788888888888888744 33 7778888888888888888776655 778888888888776


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++    +++|+.|++++|.|++++.+..+++|+.|+|++|.++++  ..+..+++|+.|++++|++++..
T Consensus       121 ~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            54    467788888888888876677778888888888888877  46777888888888888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=3.4e-17  Score=160.94  Aligned_cols=182  Identities=16%  Similarity=0.169  Sum_probs=151.3

Q ss_pred             hhHHHHhcccccccCccCcchhhch--hhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDS--ESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l--~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      ++..+..+++|+.|++.++......  +..+.   .+..+    +.|++++|.++.+|. +..+++|+.|++++|.+++.
T Consensus        44 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~L----~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~  116 (306)
T 2z66_A           44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF---GTTSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM  116 (306)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH---SCSCC----CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESS
T ss_pred             CHhHhhccccCCEEECCCCccCcccCcccccc---ccccc----CEEECCCCccccChhhcCCCCCCCEEECCCCccccc
Confidence            4455788999999999988765321  11111   12222    699999999999887 88999999999999999855


Q ss_pred             cc-ccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCc--cc-----cCcccEEEcCCCCCCCCCC--CC
Q psy13451        403 CL-RHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI--IL-----CVYFQSLKLTHCSLSSLHV--FP  470 (522)
Q Consensus       403 ~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~  470 (522)
                      .+ ..+..+++|+.|++++|.++...  .+..+++|+.|++++|.++.  ++     +++|+.|++++|.++++++  +.
T Consensus       117 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  196 (306)
T 2z66_A          117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  196 (306)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence            44 57889999999999999998753  47889999999999999875  33     4789999999999999854  88


Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       471 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      .+++|+.|+|++|.++++++..+..+++|+.|++++|+++....
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            89999999999999999988889999999999999999986543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=8.7e-17  Score=158.31  Aligned_cols=172  Identities=22%  Similarity=0.288  Sum_probs=148.1

Q ss_pred             HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451        329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      ....+++|+.|++.++.... ++. +   ..+..+    +.|++++|.++.++.+..+++|+.|++++|.+++ ++ .+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~~-~---~~l~~L----~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~  104 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT-IEG-V---QYLNNL----IGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-AIA  104 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CTT-G---GGCTTC----CEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-GGT
T ss_pred             cHHHcCCcCEEEeeCCCccC-chh-h---hccCCC----CEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-hhc
Confidence            34678999999988876543 221 1   112222    6999999999999889999999999999999984 44 688


Q ss_pred             CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451        409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA  484 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~  484 (522)
                      .+++|+.|++++|.++.++.+..+++|+.|++++|.++.++    +++|+.|++++|.+++++++..+++|+.|++++|.
T Consensus       105 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK  184 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc
Confidence            99999999999999999988999999999999999998765    57899999999999998888999999999999999


Q ss_pred             CCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        485 IDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       485 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++++++  +..+++|+.|++++|+++...
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc
Confidence            999874  889999999999999998654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=2.2e-16  Score=150.56  Aligned_cols=145  Identities=22%  Similarity=0.251  Sum_probs=131.4

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l  445 (522)
                      +.++++++.++.+|. .-.+.++.|++++|.+++..+..|..+++|+.|++++|.++.++  .+..+++|+.|++++|.+
T Consensus        17 ~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           17 KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             TEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            589999999999997 22379999999999999888888999999999999999999976  388999999999999999


Q ss_pred             Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +.++      +++|+.|+|++|.|+.+++  +..+++|+.|+|++|.|+.+++..|+.+++|+.|+|++|.++...
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            8765      4789999999999999887  788999999999999999999888999999999999999998554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=7.4e-17  Score=167.57  Aligned_cols=128  Identities=22%  Similarity=0.297  Sum_probs=116.8

Q ss_pred             CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEc
Q psy13451        387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKL  458 (522)
Q Consensus       387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~L  458 (522)
                      ++|+.|++++|.+++..|..|..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++      +++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            57888899999988888888999999999999999999874  6889999999999999998764      578999999


Q ss_pred             CCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        459 THCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       459 s~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++|.++++++  +..+++|+.|+|++|.|+.+++..+..+++|+.|++++|+++|+|.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999854  8899999999999999999998889999999999999999999986

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=3.9e-17  Score=154.60  Aligned_cols=171  Identities=15%  Similarity=0.144  Sum_probs=126.0

Q ss_pred             cccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCC-cccccC--cCCCCcccEEEecC-CCCCCcccccCCCC
Q psy13451        335 LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ-LTSIHH--MHCFAHCKQVDLSN-NPLTNNCLRHLTPL  410 (522)
Q Consensus       335 ~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~-l~~l~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l  410 (522)
                      +|+.|++.++....-....+..   ++.+    +.|++++|. ++.++.  +..+++|+.|++++ |.+++..+..|..+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~---l~~L----~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSN---LPNI----SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTT---CTTC----CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             cccEEEEeCCcceEECHHHccC---CCCC----cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            6777887776654322221111   1122    588888886 888765  77888888888887 88885555677888


Q ss_pred             CCccEEEcCCCCCCCCCCCCCCCCcC---EEEccCC-CCCccc------cCccc-EEEcCCCCCCCCCC--CCCCCCCCE
Q psy13451        411 VACESLKLTHCSLSSLHVFPHLPSLE---SLDVSHN-APNIIL------CVYFQ-SLKLTHCSLSSLHV--FPHLPSLES  477 (522)
Q Consensus       411 ~~L~~L~l~~n~l~~~~~~~~l~~L~---~L~ls~N-~l~~~~------~~~L~-~L~Ls~n~l~~~~~--l~~~~~L~~  477 (522)
                      ++|+.|++++|.++.+|.+..+++|+   .|++++| .++.++      +++|+ .|++++|.++.++.  +.. ++|+.
T Consensus       105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~  183 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA  183 (239)
T ss_dssp             TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred             CCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence            88888888888888888777777777   8888888 777655      35677 88888888887765  444 68888


Q ss_pred             EEccCCC-CCCCChhhhcCC-CCccEEEecCCCCcccc
Q psy13451        478 LDVSHNA-IDHIEDSVFAKY-EACVQVILTGNPVSADM  513 (522)
Q Consensus       478 L~Ls~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~  513 (522)
                      |+|++|. ++.+++..|..+ ++|+.|++++|+++...
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            8888884 888877778888 88888888888887543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=9e-18  Score=165.76  Aligned_cols=179  Identities=14%  Similarity=0.082  Sum_probs=122.3

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      .+..+..+++|+.|+++++...+.++..+...   ..+    ++|++++|.+++ +|. +..+++|+.|++++|.+++.+
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  165 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI---KTL----VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC---TTC----CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHHhCC---CCC----CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence            44556777777777777776655444433221   111    477777777774 555 777777777777777777777


Q ss_pred             cccCCCCC-CccEEEcCCCCCCC-CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC-CCCCC
Q psy13451        404 LRHLTPLV-ACESLKLTHCSLSS-LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV-FPHLP  473 (522)
Q Consensus       404 ~~~~~~l~-~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~  473 (522)
                      |..+..++ +|+.|++++|.+++ +| .+..++ |+.|++++|.++...      .++|+.|++++|.++...+ +..++
T Consensus       166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  244 (313)
T 1ogq_A          166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK  244 (313)
T ss_dssp             CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred             CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence            77777776 77777777777764 33 355554 777777777776432      4667788888887775444 66777


Q ss_pred             CCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +|+.|+|++|.+++..+..+..+++|+.|+|++|++++.
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            888888888888766556777788888888888877643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.70  E-value=4.6e-17  Score=170.30  Aligned_cols=148  Identities=26%  Similarity=0.363  Sum_probs=116.2

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.+.+.+|..+....+|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            355555555555443  555566666666665555555554444557777777778888776  4788899999999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      .++.++      +++|+.|+|++|.++++++  +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|..
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            998765      4688999999999999865  88999999999999999999988899999999999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=2.2e-17  Score=165.76  Aligned_cols=181  Identities=17%  Similarity=0.236  Sum_probs=139.2

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCC-CCCCc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNN-PLTNN  402 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n-~l~~~  402 (522)
                      +..+..+++|+.||++++.........+..   ++.+    ++|++++|.++.+|.   +..+++|+.|++++| .++..
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKP---LSSL----TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTT---CTTC----SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCC---CccC----CEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence            344567778888887776655322221211   1222    588888888888765   777888888888888 46655


Q ss_pred             ccccCCCCCCccEEEcCCCCCCCC-C-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC------
Q psy13451        403 CLRHLTPLVACESLKLTHCSLSSL-H-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV------  468 (522)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~------  468 (522)
                      .+..|..+++|+.|++++|.++.+ + .+..+++|+.|++++|.++.++      .++|+.|++++|.+++.+.      
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence            567788888888888888888875 2 5788888888899888887655      5788999999999887542      


Q ss_pred             ---------------------------CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        469 ---------------------------FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       469 ---------------------------l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                                                 +..+++|+.|+|++|.++.++...|+.+++|+.|++++|++.|+|.
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                                       3467899999999999999987778999999999999999999984

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.1e-16  Score=172.36  Aligned_cols=143  Identities=24%  Similarity=0.333  Sum_probs=76.2

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEcc----
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVS----  441 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls----  441 (522)
                      +.|++++|.|+.+|.  +..+++|+.|+|++|.+++..|..|..+++|+.|++++|.++.++ ++.+++|+.|+++    
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCC
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCcc
Confidence            355555555555544  455555555555555555444445555555555555555555432 1222222222222    


Q ss_pred             ---------------CCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEE
Q psy13451        442 ---------------HNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI  503 (522)
Q Consensus       442 ---------------~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  503 (522)
                                     +|.++.++   +++|+.|++++|.+++.+.+..+++|+.|+|++|.++++++..|+.+++|+.|+
T Consensus       205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence                           22222111   124555555555555544456666777777777777766656666666777777


Q ss_pred             ecCCCCcc
Q psy13451        504 LTGNPVSA  511 (522)
Q Consensus       504 L~~N~l~~  511 (522)
                      |++|.++.
T Consensus       285 Ls~N~l~~  292 (597)
T 3oja_B          285 ISNNRLVA  292 (597)
T ss_dssp             CTTSCCCE
T ss_pred             CCCCCCCC
Confidence            77666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=1.4e-16  Score=162.08  Aligned_cols=143  Identities=25%  Similarity=0.344  Sum_probs=83.1

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcC---------
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLE---------  436 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~---------  436 (522)
                      +.|++++|.++.+|.  +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++ +..+++|+         
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccc
Confidence            466666666666655  456666666666666666555555666666666666666665542 22222232         


Q ss_pred             ----------EEEccCCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEE
Q psy13451        437 ----------SLDVSHNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI  503 (522)
Q Consensus       437 ----------~L~ls~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  503 (522)
                                .|++++|.++.++   .++|+.|++++|.+++.+.+..+++|+.|+|++|.++++++..+..+++|+.|+
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence                      2333333332222   134555666666665554456666777777777777766556666677777777


Q ss_pred             ecCCCCcc
Q psy13451        504 LTGNPVSA  511 (522)
Q Consensus       504 L~~N~l~~  511 (522)
                      +++|.++.
T Consensus       279 L~~n~l~~  286 (390)
T 3o6n_A          279 ISNNRLVA  286 (390)
T ss_dssp             CCSSCCCE
T ss_pred             CCCCcCcc
Confidence            77766654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=1.7e-17  Score=173.80  Aligned_cols=185  Identities=15%  Similarity=0.118  Sum_probs=140.1

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhh----------cccccCCC-CC-cEEEecCCCcccccCcCCCCcccEEE
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIE----------TFIQTNPR-AN-QITNLSSLQLTSIHHMHCFAHCKQVD  393 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~----------~~l~~l~~-~~-~~L~ls~n~l~~l~~~~~l~~L~~L~  393 (522)
                      ++..+..+++|+.|++++|...+..+  +...          +.+..++. +. +.|++++|.++.++. ..+++|+.|+
T Consensus        50 ~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~  126 (487)
T 3oja_A           50 SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-SRGQGKKNIY  126 (487)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE-CCCSSCEEEE
T ss_pred             CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc-cccCCCCEEE
Confidence            45566777777777777776554322  1110          01111111 11 566666666666554 3467899999


Q ss_pred             ecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCC-CCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCC
Q psy13451        394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFP-HLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSL  466 (522)
Q Consensus       394 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~  466 (522)
                      +++|.+++..|..|+.+++|+.|++++|.+++++  .+. .+++|+.|++++|.+++++    +++|+.|+|++|.|+++
T Consensus       127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC
Confidence            9999999888888889999999999999998853  444 6889999999999998765    57899999999999998


Q ss_pred             CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        467 HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       467 ~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++ +..+++|+.|+|++|.|+++|. .++.+++|+.|++++|++.|.+.
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CHhHcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcch
Confidence            76 8888999999999999998774 58888999999999999997764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=3e-16  Score=151.57  Aligned_cols=144  Identities=24%  Similarity=0.304  Sum_probs=131.4

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l  445 (522)
                      +.|++++|.++.++.+..+++|+.|++++|.+++ + ..+..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus        44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence            5899999999999999999999999999999985 3 468899999999999999999864  78999999999999999


Q ss_pred             Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +.++      +++|+.|++++|.++++++  +..+++|+.|++++|.++++++..++.+++|+.|++++|.++...
T Consensus       122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            8765      4689999999999999887  789999999999999999999888999999999999999998644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.3e-16  Score=170.74  Aligned_cols=172  Identities=19%  Similarity=0.228  Sum_probs=148.0

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      +..+++|+.|++.++.... ++. +   ..++.+    +.|+|++|.|++++++..+++|+.|+|++|.+++ +| .+..
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~~-l---~~l~~L----~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~  107 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQG-I---QYLPNV----TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKD  107 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CTT-G---GGCTTC----CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred             hhcCCCCCEEECcCCCCCC-ChH-H---ccCCCC----CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence            5788999999988876443 221 1   122222    5999999999999889999999999999999984 44 6899


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      +++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++    +++|+.|+|++|.|++++++..+++|+.|+|++|.|
T Consensus       108 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC
Confidence            9999999999999999998999999999999999998765    588999999999999988899999999999999999


Q ss_pred             CCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        486 DHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++++  .+..+++|+.|+|++|++.....
T Consensus       188 ~~l~--~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          188 SDLR--ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence            9974  68999999999999999876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=1.1e-16  Score=174.81  Aligned_cols=189  Identities=21%  Similarity=0.207  Sum_probs=144.7

Q ss_pred             hHHHHhcccccccCccCcchhhchhh-hhhhhc----------ccccCC------CCC-cEEEecCCCccc---ccC-cC
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSES-KYKIET----------FIQTNP------RAN-QITNLSSLQLTS---IHH-MH  384 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~-~~~~~~----------~l~~l~------~~~-~~L~ls~n~l~~---l~~-~~  384 (522)
                      +..+..+++|+.|+++++.....++. .+....          .+..+.      .+. +.|++++|.++.   +|. +.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            45567788888888877766543321 111100          011110      012 567777776653   344 77


Q ss_pred             CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC----------CCCCCCCcCEEEccCCCCCccc-----
Q psy13451        385 CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------VFPHLPSLESLDVSHNAPNIIL-----  449 (522)
Q Consensus       385 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~ls~N~l~~~~-----  449 (522)
                      .+++|+.|++++|.+++..+..|.++++|+.|++++|.++.++          .+..+++|+.|++++|.++.++     
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            8889999999999999777777889999999999999988652          2678899999999999998776     


Q ss_pred             -cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhc-CCCCccEEEecCCCCcccccc
Q psy13451        450 -CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFA-KYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       450 -~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~  515 (522)
                       +++|+.|++++|.++.+++  +..+++|+.|+|++|.++.+++..++ .+++|+.|++++|++.|+|..
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence             3678999999999999886  78899999999999999999988787 789999999999999999963

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=3.2e-17  Score=162.15  Aligned_cols=185  Identities=15%  Similarity=0.118  Sum_probs=140.5

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhh----------cccccCCC-CC-cEEEecCCCcccccCcCCCCcccEEE
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIE----------TFIQTNPR-AN-QITNLSSLQLTSIHHMHCFAHCKQVD  393 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~----------~~l~~l~~-~~-~~L~ls~n~l~~l~~~~~l~~L~~L~  393 (522)
                      .+..+..+++|+.|+++++......+  +...          +.+..++. +. +.|++++|.++.++. ..+++|+.|+
T Consensus        50 ~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~  126 (317)
T 3o53_A           50 SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-SRGQGKKNIY  126 (317)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE-CCCSSCEEEE
T ss_pred             CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc-cccCCCCEEE
Confidence            56778888888888888877654222  1110          11111111 11 456666666666544 3467889999


Q ss_pred             ecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CC-CCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCC
Q psy13451        394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VF-PHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSL  466 (522)
Q Consensus       394 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~  466 (522)
                      +++|.+++..+..+..+++|+.|++++|.++.++  .+ ..+++|+.|++++|.++.++    .++|+.|++++|.++++
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc
Confidence            9999998777778888999999999999998863  34 46789999999999998765    57899999999999988


Q ss_pred             CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        467 HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       467 ~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++ +..+++|+.|+|++|.|+.++. .+..+++|+.|++++|++.|++.
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHH
T ss_pred             hhhhcccCcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCH
Confidence            76 7888999999999999998874 57889999999999999997654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.8e-16  Score=145.32  Aligned_cols=140  Identities=18%  Similarity=0.282  Sum_probs=113.6

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~l  445 (522)
                      +.|++++|.++.+|.+..+++|+.|++++|.++  .+..+..+++|+.|++++|.++.  ++.++.+++|+.|++++|.+
T Consensus        47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           47 TYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             cEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            378888888888888888888888888888766  33467888888888888888886  45688888888888888888


Q ss_pred             Cccc------cCcccEEEcCCCC-CCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        446 NIIL------CVYFQSLKLTHCS-LSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       446 ~~~~------~~~L~~L~Ls~n~-l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +...      +++|+.|++++|. +++++.+..+++|+.|++++|.+++++  .+..+++|+.|++++|+++.
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            7522      5788899999997 888877888999999999999999876  68889999999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=3.3e-17  Score=161.67  Aligned_cols=180  Identities=11%  Similarity=0.088  Sum_probs=149.9

Q ss_pred             hhHHHHhcccccccCccC-cchhhchhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCc
Q psy13451        326 NEIILKRFDLLKTLDPLR-LNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~-~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      .+..+..+++|+.|++.+ +...+.++..+..   +..+    ++|++++|.+++ +|. +..+++|++|++++|.+++.
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~---l~~L----~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  140 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK---LTQL----HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGG---CTTC----SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhc---CCCC----CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc
Confidence            455678899999999985 6666655554432   2222    599999999994 676 89999999999999999999


Q ss_pred             ccccCCCCCCccEEEcCCCCCC-CCC-CCCCCC-CcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451        403 CLRHLTPLVACESLKLTHCSLS-SLH-VFPHLP-SLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV--FPHL  472 (522)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~-~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~--l~~~  472 (522)
                      +|..|..+++|++|++++|.++ .+| .+..++ +|+.|++++|.+++..     ...|+.|++++|.+++..+  +..+
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l  220 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC
Confidence            9999999999999999999998 455 577787 9999999999987432     2349999999999987665  8899


Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       473 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++|+.|+|++|.++..++. +..+++|+.|+|++|.+++..
T Consensus       221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred             CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence            9999999999999976644 788999999999999998544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.68  E-value=1.3e-16  Score=158.45  Aligned_cols=173  Identities=20%  Similarity=0.202  Sum_probs=144.3

Q ss_pred             cccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       333 l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      .+.++.|++.++.+. .++..+..   +..+    ++|++++|.++.+|. +..+++|+.|++++|.++ .+|..+..++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~---l~~L----~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR---LSHL----QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG---GTTC----SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT
T ss_pred             ccceeEEEccCCCch-hcChhhhh---CCCC----CEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCc
Confidence            478889999887765 33332221   2222    599999999999988 899999999999999999 8898999999


Q ss_pred             CccEEEcCCCCCC-CCC-CCC---------CCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-CCCCCC
Q psy13451        412 ACESLKLTHCSLS-SLH-VFP---------HLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-FPHLPS  474 (522)
Q Consensus       412 ~L~~L~l~~n~l~-~~~-~~~---------~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~  474 (522)
                      +|+.|++++|.+. .+| .+.         .+++|+.|++++|.++.++     +++|+.|++++|.++++++ +..+++
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            9999999997544 455 233         4899999999999998775     5789999999999999876 888999


Q ss_pred             CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      |+.|+|++|.+.+..+..++.+++|+.|+|++|++.....
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            9999999999888777889999999999999998765543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=1.6e-16  Score=170.95  Aligned_cols=182  Identities=22%  Similarity=0.279  Sum_probs=104.3

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      ++..++.+++|+.|+++++.+.......+..   ++.+    +.|++++|.++++++  +..+++|+.|++++|.+++..
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKL----TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---CTTC----CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc---CCCC----CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            4445566667777766665444211111111   1111    699999999999765  889999999999999988543


Q ss_pred             cccCCCC-------------------------------------CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCC
Q psy13451        404 LRHLTPL-------------------------------------VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPN  446 (522)
Q Consensus       404 ~~~~~~l-------------------------------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~  446 (522)
                      +..+..+                                     ++|+.|++++|.+++++.+..+++|+.|++++|.++
T Consensus       188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC
Confidence            2222211                                     124444444444444444555566666666666655


Q ss_pred             ccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChh--------------------hhcCCCCc
Q psy13451        447 IIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDS--------------------VFAKYEAC  499 (522)
Q Consensus       447 ~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~--------------------~l~~l~~L  499 (522)
                      +++      +++|+.|+|++|.+++++. +..+++|+.|+|++|.++.++..                    .+..+++|
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L  347 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL  347 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCC
Confidence            432      3455566666666555544 34455555555555555544321                    14455666


Q ss_pred             cEEEecCCCCccccc
Q psy13451        500 VQVILTGNPVSADMV  514 (522)
Q Consensus       500 ~~L~L~~N~l~~~~~  514 (522)
                      +.|++++|+++|++.
T Consensus       348 ~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          348 KNLTLSHNDWDCNSL  362 (597)
T ss_dssp             SEEECCSSCEEHHHH
T ss_pred             CEEEeeCCCCCChhH
Confidence            666777777766654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=2.9e-16  Score=153.23  Aligned_cols=141  Identities=22%  Similarity=0.260  Sum_probs=130.3

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.++.++.+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.
T Consensus        49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred             cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC
Confidence            4899999999999889999999999999999995444  89999999999999999999999999999999999999987


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++    +++|+.|++++|.+++++.+..+++|+.|++++|.++++++  +..+++|+.|++++|.++..
T Consensus       127 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            65    58899999999999999778999999999999999999875  89999999999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=2e-16  Score=157.24  Aligned_cols=145  Identities=18%  Similarity=0.211  Sum_probs=115.3

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.++.  ..+..|..+++|+.|++++|.++.+|... .++|+.|++++|
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n  202 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGN  202 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTS
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCC
Confidence            678888888877665  7778888888888888753  45667778888888888888888876422 278889999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      .++.++      +++|+.|++++|.++++++  +..+++|+.|+|++|.++.++ ..+..+++|+.|++++|+++....
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-hhhccCCCcCEEECCCCcCCccCh
Confidence            887653      4678999999999988765  778889999999999999776 457888999999999999886543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=3.8e-16  Score=156.24  Aligned_cols=145  Identities=17%  Similarity=0.209  Sum_probs=114.9

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.++.++.+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.
T Consensus       180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC
Confidence            5777777777777767777777777777777774333  67778888888888888887777888888888888888876


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++    +++|+.|++++|.+++++.+..+++|+.|++++|.+++.++..++.+++|+.|++++|++++...
T Consensus       258 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            54    57788888888888887667778888888888888888877788888888888888888876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=2e-16  Score=167.28  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=130.8

Q ss_pred             cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCC-CC--CCCCCCCcCEEEc
Q psy13451        368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSS-LH--VFPHLPSLESLDV  440 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l  440 (522)
                      +.|++++|.+++ +|. +..+++|+.|++++|.+++  .+|..+..+++|+.|++++|.++. +|  .+..+++|+.|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            799999999998 455 8899999999999999986  455778899999999999999998 76  4788899999999


Q ss_pred             cCCCCCccc----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        441 SHNAPNIIL----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       441 s~N~l~~~~----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|.+++..    +++|+.|++++|.|+.++. +..+++|+.|+|++|.++.++...+..+++|+.|++++|+++|+|..
T Consensus       407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999996432    2689999999999998886 66899999999999999999877799999999999999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=1.2e-16  Score=157.56  Aligned_cols=173  Identities=16%  Similarity=0.126  Sum_probs=109.4

Q ss_pred             hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCC-----CcccEEEecCCCCCCcccc
Q psy13451        332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCF-----AHCKQVDLSNNPLTNNCLR  405 (522)
Q Consensus       332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l-----~~L~~L~Ls~n~l~~~~~~  405 (522)
                      .+++|+.|+++++...+..+..+.. ..++.+    +.|++++|.++++|. +..+     ++|++|++++|.+++..|.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L----~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLE-ATGPDL----NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSS-CCSCCC----SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCcccchhHHHHHH-hcCCCc----cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            5778888887777665544432210 111111    577777777777655 4444     6777777777777766667


Q ss_pred             cCCCCCCccEEEcCCCCCCCC----CC--CCCCCCcCEEEccCCCCCccc---------cCcccEEEcCCCCCCCCCC--
Q psy13451        406 HLTPLVACESLKLTHCSLSSL----HV--FPHLPSLESLDVSHNAPNIIL---------CVYFQSLKLTHCSLSSLHV--  468 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~n~l~~~----~~--~~~l~~L~~L~ls~N~l~~~~---------~~~L~~L~Ls~n~l~~~~~--  468 (522)
                      .|+.+++|+.|++++|.+.+.    +.  +..+++|+.|++++|.++.++         .++|+.|++++|.+++.++  
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            777777777777777776542    12  366777777777777776332         2567777777777776442  


Q ss_pred             -CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        469 -FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       469 -l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                       +..+++|+.|+|++|.|+.++.. +.  ++|+.|+|++|+++..
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSC
T ss_pred             hhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCC
Confidence             44566777777777777765532 22  5666677777666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1.9e-15  Score=140.60  Aligned_cols=187  Identities=13%  Similarity=0.055  Sum_probs=165.9

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      ..........|.+ ++|+..+++++.++|++..+|..++.++...+.          +++++..++++++.+|++..+|.
T Consensus         9 ~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~   77 (217)
T 2pl2_A            9 LRLGVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLGL----------VNPALENGKTLVARTPRYLGGYM   77 (217)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHH
Confidence            3445556667776 889999999999999999999999999999988          79999999999999999999999


Q ss_pred             hHHHHHHHhc--------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        108 QRCYVLDHIS--------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       108 ~R~~il~~l~--------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                      .++.++....        ..+++++++..++++++.+|++..+|..++.++...+. ++++++.++++++.+ .+..+|.
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~-~~~~~~~  155 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE-DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc-cchHHHH
Confidence            9999887641        01678999999999999999999999999999999998 799999999999999 9999999


Q ss_pred             HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      .++.++...            +++++++..+++++..+|++..+|..+..++...++...
T Consensus       156 ~la~~~~~~------------g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          156 ALAELYLSM------------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHHHHH------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            999999988            889999999999999999999999999999988877655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=2.7e-16  Score=160.02  Aligned_cols=183  Identities=22%  Similarity=0.257  Sum_probs=102.0

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      ++..+..+++|+.|++.++.... ++....  ..++.+    +.|++++|.++.++.  +..+++|+.|++++|.+++..
T Consensus       109 ~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          109 PPHVFQNVPLLTVLVLERNDLSS-LPRGIF--HNTPKL----TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTT--TTCTTC----CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             CHHHhcCCCCCCEEECCCCccCc-CCHHHh--cCCCCC----cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence            34455666777777766654432 111100  011111    799999999999765  889999999999999987543


Q ss_pred             cccCCCC-------------------------------------CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCC
Q psy13451        404 LRHLTPL-------------------------------------VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPN  446 (522)
Q Consensus       404 ~~~~~~l-------------------------------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~  446 (522)
                      ...+..+                                     ++|+.|++++|.++.++.+..+++|+.|++++|.++
T Consensus       182 ~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC
Confidence            2222211                                     134444444444444444455555666666666555


Q ss_pred             ccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChh--------------------hhcCCCCc
Q psy13451        447 IIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDS--------------------VFAKYEAC  499 (522)
Q Consensus       447 ~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~--------------------~l~~l~~L  499 (522)
                      .+.      +++|+.|++++|.+++++. +..+++|+.|+|++|.++.++..                    .+..+++|
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L  341 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL  341 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred             CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccC
Confidence            432      3445555555555555443 33445555555555555444321                    13455666


Q ss_pred             cEEEecCCCCcccccc
Q psy13451        500 VQVILTGNPVSADMVV  515 (522)
Q Consensus       500 ~~L~L~~N~l~~~~~~  515 (522)
                      +.|++++|++.|++..
T Consensus       342 ~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          342 KNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             SEEECCSSCEEHHHHH
T ss_pred             CEEEcCCCCccchhHH
Confidence            6666667776666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=1.7e-15  Score=136.47  Aligned_cols=163  Identities=12%  Similarity=0.036  Sum_probs=154.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++ ++|++.++++|.++|++..+|..++.++...+.          +++++..+..++..+|++..+|...+
T Consensus        12 G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A           12 GDKKRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL----------PNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            4445667777 889999999999999999999999999999988          79999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP  190 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~  190 (522)
                      .+....   .+++.++..+.+++..+|.+..+|..++.+....+. +++++++++++++.+|.+..+|..++.++..+  
T Consensus        81 ~~~~~~---~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--  154 (184)
T 3vtx_A           81 SANFMI---DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK--  154 (184)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHc---CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC--
Confidence            999998   899999999999999999999999999999999998 79999999999999999999999999999988  


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHhcCCCC
Q psy13451        191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKD  220 (522)
Q Consensus       191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~  220 (522)
                                +.++++++++++|+..+|++
T Consensus       155 ----------g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          155 ----------GLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             ----------TCHHHHHHHHHHHHHTTHHH
T ss_pred             ----------CCHHHHHHHHHHHHhCCccC
Confidence                      88999999999999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=1.7e-16  Score=171.05  Aligned_cols=180  Identities=20%  Similarity=0.175  Sum_probs=145.2

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      +..+..+++|+.|+++++.... ++..+.   .+..+    +.|++++|.+++++.   +..+++|+.|++++|.+++..
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~---~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAII-MSANFM---GLEEL----QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEE-ECCCCT---TCTTC----CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             hhhhccCCcccEeECCCCcccc-chhhcc---CCCCC----CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence            4566677777777776665332 111111   11111    689999999888632   788999999999999999888


Q ss_pred             cccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451        404 LRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL  472 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~  472 (522)
                      |..+..+++|+.|++++|.+++  +| .+..+++|+.|++++|.++.++      +++|+.|++++|.++++++  +..+
T Consensus       441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            8899999999999999999986  44 5889999999999999998764      4789999999999999854  8899


Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCC-CccEEEecCCCCcccccc
Q psy13451        473 PSLESLDVSHNAIDHIEDSVFAKYE-ACVQVILTGNPVSADMVV  515 (522)
Q Consensus       473 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|+.|+|++|.++.++.. +..++ +|+.|++++|++.|+|..
T Consensus       521 ~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          521 YSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999988754 88886 599999999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=1e-16  Score=158.06  Aligned_cols=174  Identities=19%  Similarity=0.223  Sum_probs=141.1

Q ss_pred             HhcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCc--ccc
Q psy13451        331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN--CLR  405 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~--~~~  405 (522)
                      ..+++|+.|+++++..... +..+...   .....+. ++|++++|.++.++.  +..+++|+.|++++|.+.+.  .|.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l---~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAEL---QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHH---HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHH---HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            7889999999999887665 3322211   1111123 699999999999874  89999999999999998765  233


Q ss_pred             cC--CCCCCccEEEcCCCCCCCCCC-----CCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCCCC-CC
Q psy13451        406 HL--TPLVACESLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLHV-FP  470 (522)
Q Consensus       406 ~~--~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-l~  470 (522)
                      .+  ..+++|+.|++++|.++.++.     +..+++|+.|++++|.++...       +++|+.|++++|.|+.++. +.
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            44  889999999999999996542     357789999999999998743       3689999999999998876 44


Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       471 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                        ++|+.|+|++|.|++++.  +..+++|+.|++++|+++..
T Consensus       274 --~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             --SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             --CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence              899999999999999953  88999999999999999864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.67  E-value=3.2e-16  Score=155.93  Aligned_cols=143  Identities=16%  Similarity=0.231  Sum_probs=87.0

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.++.  ..+..+..+ +|+.|++++|.++.+|.. ..++|+.|++++|
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n  203 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHN  203 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCC
Confidence            344555555544443  4445555555555555431  333444444 455555555555544421 1146677777777


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .++.++      +++|+.|++++|.++++++  +..+++|+.|+|++|.++.++. .+..+++|+.|++++|+++...
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccC
Confidence            766544      3567778888888777765  6777788888888888887663 4777888888888888887554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.66  E-value=3.1e-16  Score=156.83  Aligned_cols=168  Identities=18%  Similarity=0.158  Sum_probs=138.5

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      +..+++|+.|++.++.......     ...+..+    +.+++++|.++.++.+..+++|+.|++++|.+++. +. +..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L----~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~  241 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP-----LASLTSL----HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP-LAN  241 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG-----GGGCTTC----CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred             hccCCCCCEEEccCCccccccc-----ccCCCcc----ceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhc
Confidence            5667777777776665432111     1111222    69999999999988888999999999999999854 43 889


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHN  483 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N  483 (522)
                      +++|+.|++++|.++.++.+..+++|+.|++++|.++.++    +++|+.|++++|.+++.++  +..+++|+.|++++|
T Consensus       242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            9999999999999999988999999999999999998765    5889999999999998765  788999999999999


Q ss_pred             CCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451        484 AIDHIEDSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       484 ~l~~~~~~~l~~l~~L~~L~L~~N~l~  510 (522)
                      .++++++  +..+++|+.|++++|+++
T Consensus       322 ~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          322 HITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccccC--hhhhhccceeehhhhccc
Confidence            9999875  889999999999999986

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.66  E-value=2.8e-16  Score=174.05  Aligned_cols=78  Identities=27%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CC-CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LH-VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.+++ +|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            455555555553 333 5555555555555555555555555555555555555555543 22 3444444555555444


Q ss_pred             CC
Q psy13451        444 AP  445 (522)
Q Consensus       444 ~l  445 (522)
                      .+
T Consensus       549 ~l  550 (768)
T 3rgz_A          549 LF  550 (768)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=1.4e-16  Score=171.76  Aligned_cols=147  Identities=20%  Similarity=0.223  Sum_probs=103.2

Q ss_pred             cEEEecCCCccccc-C--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC-----CCCCCCCCcCEEE
Q psy13451        368 QITNLSSLQLTSIH-H--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL-----HVFPHLPSLESLD  439 (522)
Q Consensus       368 ~~L~ls~n~l~~l~-~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~  439 (522)
                      +.|++++|.++... .  +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.     ..+..+++|+.|+
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            56666666666532 1  55666777777777777666666666677777777777766541     1356667777777


Q ss_pred             ccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        440 VSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       440 ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +++|.++.++      +++|+.|++++|.+++.++  +..+++| .|+|++|.++++++..++.+++|+.|++++|++.|
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            7777776553      3567777777777776654  6777777 78888888887777777888888999999999999


Q ss_pred             cccc
Q psy13451        512 DMVV  515 (522)
Q Consensus       512 ~~~~  515 (522)
                      +|..
T Consensus       562 ~c~~  565 (606)
T 3t6q_A          562 TCSN  565 (606)
T ss_dssp             SGGG
T ss_pred             cCCc
Confidence            8863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=6e-16  Score=161.79  Aligned_cols=145  Identities=26%  Similarity=0.369  Sum_probs=85.8

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            456666666655433  555666666666666666555555666666666666666666554  2555556666666666


Q ss_pred             CCCccc------cC------------------------cccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChh
Q psy13451        444 APNIIL------CV------------------------YFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDS  491 (522)
Q Consensus       444 ~l~~~~------~~------------------------~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~  491 (522)
                      .+..++      ++                        +|+.|++++|.++.++.  +..+++|+.|+|++|.++.+++.
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence            554332      11                        34555555555555553  55666666677776666666666


Q ss_pred             hhcCCCCccEEEecCCCCccc
Q psy13451        492 VFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       492 ~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      .|..+++|+.|+|++|.++..
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEE
T ss_pred             hccccccCCEEECCCCccceE
Confidence            666666777777777766543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=2.8e-16  Score=173.96  Aligned_cols=146  Identities=23%  Similarity=0.222  Sum_probs=127.7

Q ss_pred             cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CC-----------------
Q psy13451        368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LH-----------------  427 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-----------------  427 (522)
                      +.|++++|.+++ +|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++ +|                 
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            699999999995 666 8899999999999999999999999999999999999998763 22                 


Q ss_pred             ------------------------------------------------------CCCCCCCcCEEEccCCCCCcc-c---
Q psy13451        428 ------------------------------------------------------VFPHLPSLESLDVSHNAPNII-L---  449 (522)
Q Consensus       428 ------------------------------------------------------~~~~l~~L~~L~ls~N~l~~~-~---  449 (522)
                                                                            .+..+++|+.|++++|.+++. |   
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                  234467899999999999853 3   


Q ss_pred             --cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        450 --CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       450 --~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                        ++.|+.|+|++|.+++..+  ++.+++|+.|||++|++++..+..++.++.|+.|++++|++++..
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence              5789999999999997555  899999999999999999888889999999999999999987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=5.9e-16  Score=149.74  Aligned_cols=172  Identities=22%  Similarity=0.266  Sum_probs=137.9

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      ++|+.|+++++.........+..   +..+    +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~---l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFS---FPEL----QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTT---CTTC----SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccEEECCCCcccccCHhHhcc---ccCC----cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            46889998887665433222211   2222    699999999999875  88999999999999999977778899999


Q ss_pred             CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCcc--c-----cCcccEEEcCCCCCCCCCC--CCCCCCCC----
Q psy13451        412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNII--L-----CVYFQSLKLTHCSLSSLHV--FPHLPSLE----  476 (522)
Q Consensus       412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~--~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~----  476 (522)
                      +|+.|++++|.++.++  .+..+++|+.|++++|.++.+  +     +++|+.|++++|.++++++  +..+++|+    
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            9999999999999876  488999999999999999863  2     4789999999999998764  44445555    


Q ss_pred             EEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       477 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .|++++|.++.+++..+.. .+|+.|++++|.++...
T Consensus       181 ~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVP  216 (276)
T ss_dssp             EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCC
T ss_pred             eeecCCCcccccCccccCC-CcccEEECCCCceeecC
Confidence            8999999999988665554 48999999999987544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=1.1e-15  Score=151.92  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=132.9

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhh--------hhcccccCC------CCC-cEEEecCCCccc--c-cC-cCCCC
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYK--------IETFIQTNP------RAN-QITNLSSLQLTS--I-HH-MHCFA  387 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~--------~~~~l~~l~------~~~-~~L~ls~n~l~~--l-~~-~~~l~  387 (522)
                      +..+..+++|+.|+++++.... ++....        ..+.+..+.      .+. +.|++++|.++.  + +. +..++
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             HHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            4556777778888777765442 111110        001111111      012 689999998864  2 33 77889


Q ss_pred             cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcC
Q psy13451        388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLT  459 (522)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls  459 (522)
                      +|+.|++++|.++ .+|..+.  ++|+.|++++|.++.++  .+..+++|+.|++++|.++.++      +++|+.|+++
T Consensus       172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            9999999999988 5665544  78999999999988863  5788899999999999988654      4678999999


Q ss_pred             CCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcC------CCCccEEEecCCCCccc
Q psy13451        460 HCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAK------YEACVQVILTGNPVSAD  512 (522)
Q Consensus       460 ~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l~~~  512 (522)
                      +|.++.++. +..+++|+.|++++|.|+.++...|..      .+.|+.|++++|++.+.
T Consensus       249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          249 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             SSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence            999998876 888889999999999999988766653      36788999999998653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=138.68  Aligned_cols=130  Identities=21%  Similarity=0.251  Sum_probs=111.3

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++|+++.+|. .-.++|+.|++++|.++ .+|..|..+++|+.|++++|.|+.++  .|..+++|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578999999999987 22468999999999998 77888999999999999999999886  488888888888888877


Q ss_pred             CccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       446 ~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      +.++..                .|..+++|+.|+|++|.|+.++...|..+++|+.|+|++|++.|+|..
T Consensus        91 ~~i~~~----------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           91 RCIPPR----------------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CBCCTT----------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CEeCHH----------------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            655422                267788999999999999999988899999999999999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=1.1e-15  Score=163.15  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=131.2

Q ss_pred             cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCC-CC--CCCCCCCcCEEEc
Q psy13451        368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSS-LH--VFPHLPSLESLDV  440 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l  440 (522)
                      +.|++++|.+++ +|. +..+++|+.|++++|.+++  ..|..|..+++|+.|++++|.++. +|  .+..+++|+.|++
T Consensus       356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l  435 (562)
T 3a79_B          356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL  435 (562)
T ss_dssp             CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred             eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence            799999999998 455 8899999999999999986  335678999999999999999998 66  3788999999999


Q ss_pred             cCCCCCccc----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        441 SHNAPNIIL----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       441 s~N~l~~~~----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|.+++..    +++|+.|++++|.|+.++. +..+++|+.|+|++|.++.++...+..+++|+.|++++|++.|+|..
T Consensus       436 ~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            999997533    2689999999999999886 66899999999999999999876799999999999999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=4.9e-16  Score=153.57  Aligned_cols=178  Identities=16%  Similarity=0.105  Sum_probs=133.7

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR  405 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~  405 (522)
                      +...+..+++|+.||++++......+..+...   ..+    +.|++++|.+++++++..+++|+.|++++|.+++..+.
T Consensus        26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L----~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~   98 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSGNPLSQISAADLAPF---TKL----ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG   98 (317)
T ss_dssp             HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC---TTC----CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC
T ss_pred             HHHHhccCCCCCEEECcCCccCcCCHHHhhCC---CcC----CEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC
Confidence            34455677899999999987766444333222   222    47777777777665566667777777776665532110


Q ss_pred             ----------------cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-------cCcccEEEcCC
Q psy13451        406 ----------------HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTH  460 (522)
Q Consensus       406 ----------------~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~  460 (522)
                                      ....+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++       +++|+.|++++
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence                            0123567888888888888874  5777899999999999998643       47899999999


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        461 CSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       461 n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      |.++.++....+++|+.|+|++|.++.+++. +..+++|+.|+|++|.++.
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE
T ss_pred             CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc
Confidence            9999987766789999999999999998864 8889999999999999984

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=5.9e-16  Score=165.41  Aligned_cols=178  Identities=19%  Similarity=0.233  Sum_probs=146.9

Q ss_pred             HhcccccccCccCcchhhch--hhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc-cc
Q psy13451        331 KRFDLLKTLDPLRLNYYKDS--ESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL-RH  406 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l--~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~  406 (522)
                      ..+++|+.|+++++......  +..+.   .++.+    +.|++++|.++.++. +..+++|+.|++++|.+++..+ ..
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L----~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCC----CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred             ccCCCCCEEeCcCCccCcccccccccc---ccCcc----CEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence            56778888887776654321  11111   11222    689999999998876 8889999999999999986655 56


Q ss_pred             CCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCc--cc-----cCcccEEEcCCCCCCCCCC--CCCCCCC
Q psy13451        407 LTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI--IL-----CVYFQSLKLTHCSLSSLHV--FPHLPSL  475 (522)
Q Consensus       407 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L  475 (522)
                      +..+++|+.|++++|.++...  .+..+++|+.|++++|.++.  ++     +++|+.|++++|.++++++  +..+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            889999999999999988753  57889999999999999862  33     5789999999999999854  8899999


Q ss_pred             CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       476 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      +.|++++|.++++++..+..+++|+.|++++|+++|+|..
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999988899999999999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=6.3e-16  Score=165.45  Aligned_cols=141  Identities=23%  Similarity=0.267  Sum_probs=130.6

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.++.++.+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.+..
T Consensus        46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~  123 (605)
T 1m9s_A           46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD  123 (605)
T ss_dssp             CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC
T ss_pred             CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC
Confidence            4799999999999999999999999999999996544  88999999999999999999999999999999999999987


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++    +++|+.|+|++|.|++++.+..+++|+.|+|++|.|+++++  +..+++|+.|+|++|+|+..
T Consensus       124 l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            65    68899999999999999778999999999999999999875  89999999999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=4e-16  Score=153.68  Aligned_cols=173  Identities=17%  Similarity=0.188  Sum_probs=124.8

Q ss_pred             HhcccccccCccCcchhhchhhhhhh-hcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCc--cc-
Q psy13451        331 KRFDLLKTLDPLRLNYYKDSESKYKI-ETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN--CL-  404 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~-~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~--~~-  404 (522)
                      ..+++|+.|+++++.........-.. ...++.+    +.|++++|.++.++.  +..+++|+.|+|++|++.+.  .+ 
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL----KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA  189 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC----CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCC----CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence            67788888888887766532211000 0012222    588888888888764  77888888888888887642  22 


Q ss_pred             -ccCCCCCCccEEEcCCCCCCCCCC-----CCCCCCcCEEEccCCCCCcc-c--------cCcccEEEcCCCCCCCCCC-
Q psy13451        405 -RHLTPLVACESLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAPNII-L--------CVYFQSLKLTHCSLSSLHV-  468 (522)
Q Consensus       405 -~~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~ls~N~l~~~-~--------~~~L~~L~Ls~n~l~~~~~-  468 (522)
                       ..+..+++|++|++++|.++.++.     +..+++|++|++++|.++.. |        +++|+.|++++|.|+.++. 
T Consensus       190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred             HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence             233677888888888888877653     35678888889998888765 2        1578888999998887765 


Q ss_pred             CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       469 l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +  .++|+.|+|++|.|++++.  +..+++|+.|+|++|+++.
T Consensus       270 ~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          270 L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            3  2788899999998888753  6778888899999998864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=5.7e-16  Score=162.27  Aligned_cols=172  Identities=16%  Similarity=0.114  Sum_probs=130.6

Q ss_pred             hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc------
Q psy13451        332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR------  405 (522)
Q Consensus       332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~------  405 (522)
                      .+++|+.|+++++......+..+...   +.+    +.|++++|.+++++++..+++|+.|+|++|.+++..+.      
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L----~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPF---TKL----ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTC---TTC----CEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCC---CCC----CEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEE
Confidence            34589999999987766444333221   222    57888888887765577777777777777766532211      


Q ss_pred             ----------cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCC
Q psy13451        406 ----------HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSL  466 (522)
Q Consensus       406 ----------~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~  466 (522)
                                ....+++|+.|++++|.+++++  .++.+++|+.|++++|.+++++       +++|+.|+|++|.|+++
T Consensus       105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence                      0123567888888888888863  5678899999999999998643       47889999999999998


Q ss_pred             CCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       467 ~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++...+++|+.|+|++|.|+++++. +..+++|+.|+|++|.++.
T Consensus       185 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          185 KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE
T ss_pred             cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc
Confidence            8777799999999999999998864 8889999999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=1.9e-15  Score=165.03  Aligned_cols=180  Identities=18%  Similarity=0.209  Sum_probs=128.9

Q ss_pred             ccccccCccCcchhhchhhhhhhhc----------cccc-CC-----C-CC-cEEEecCCCcccccC--cCCCCcccEEE
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIET----------FIQT-NP-----R-AN-QITNLSSLQLTSIHH--MHCFAHCKQVD  393 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~----------~l~~-l~-----~-~~-~~L~ls~n~l~~l~~--~~~l~~L~~L~  393 (522)
                      +.|+.|++.++......+..+....          .+.. ++     . +. +.|++++|.++.++.  +..+++|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            5889999988876654433322111          0000 00     0 11 455555555554433  55556666666


Q ss_pred             ecCCCCC--CcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc--------------cCcccE
Q psy13451        394 LSNNPLT--NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL--------------CVYFQS  455 (522)
Q Consensus       394 Ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~--------------~~~L~~  455 (522)
                      +++|.++  +..|..|..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++              +++|+.
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            6666554  356777888888999999999888875  3788889999999999887541              367899


Q ss_pred             EEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        456 LKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       456 L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      |++++|.++.++.  |..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.++...
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            9999999998875  888999999999999999998888889999999999999887544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=1.4e-15  Score=151.30  Aligned_cols=139  Identities=19%  Similarity=0.264  Sum_probs=78.1

Q ss_pred             cEEEecCCCccc--c-cC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEcc
Q psy13451        368 QITNLSSLQLTS--I-HH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVS  441 (522)
Q Consensus       368 ~~L~ls~n~l~~--l-~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls  441 (522)
                      +.|++++|.++.  + +. +..+ +|+.|++++|.++ .+|..+.  ++|+.|++++|.++.++  .+..+++|+.|+++
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            456666666543  2 22 4444 6666666666665 3444332  45666666666666553  35556666666666


Q ss_pred             CCCCCccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCC------CCccEEEecCCC
Q psy13451        442 HNAPNIIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKY------EACVQVILTGNP  508 (522)
Q Consensus       442 ~N~l~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l------~~L~~L~L~~N~  508 (522)
                      +|.++.++      +++|+.|++++|.++.++. +..+++|+.|++++|.|+.++...|..+      +.|+.|++++|+
T Consensus       226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            66665443      2455666666666665554 5556666666666666666554444432      445666666666


Q ss_pred             Cc
Q psy13451        509 VS  510 (522)
Q Consensus       509 l~  510 (522)
                      +.
T Consensus       306 ~~  307 (332)
T 2ft3_A          306 VP  307 (332)
T ss_dssp             SC
T ss_pred             cc
Confidence            55

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=1.2e-15  Score=158.45  Aligned_cols=93  Identities=11%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc--ccC--cCCCCcccEEEecCCCCCCc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IHH--MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~--l~~--~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      +..+..+++|++||++++......+..+..   +..+    ++|++++|.+++  ++.  +..+++|+.|++++|.+++.
T Consensus        72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  144 (455)
T 3v47_A           72 NNTFRGLSSLIILKLDYNQFLQLETGAFNG---LANL----EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI  144 (455)
T ss_dssp             TTTTTTCTTCCEEECTTCTTCEECTTTTTT---CTTC----CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred             cccccccccCCEEeCCCCccCccChhhccC---cccC----CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence            445667777777777776654433322221   1111    588888888876  333  77788888888888888866


Q ss_pred             cccc-CCCCCCccEEEcCCCCCCCC
Q psy13451        403 CLRH-LTPLVACESLKLTHCSLSSL  426 (522)
Q Consensus       403 ~~~~-~~~l~~L~~L~l~~n~l~~~  426 (522)
                      .|.. +..+++|+.|++++|.++.+
T Consensus       145 ~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          145 QPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             CCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             CcccccCCCCcccEEeCCCCccccc
Confidence            6665 77888888888888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=3e-15  Score=150.70  Aligned_cols=145  Identities=23%  Similarity=0.244  Sum_probs=127.4

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC-CCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~  444 (522)
                      +.+++++++|+.+|. .-...++.|+|++|.+++..+..|. .+++|+.|+|++|.|+.++  .|..+++|+.|+|++|.
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            589999999999997 2245789999999999977777787 8999999999999999986  58999999999999999


Q ss_pred             CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhh---cCCCCccEEEecCCCCcccc
Q psy13451        445 PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVF---AKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       445 l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++.++      +++|+.|+|++|.|+.+++  |..+++|+.|+|++|.|+.++...|   ..+++|+.|+|++|.|+...
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            98765      4789999999999999865  8999999999999999999997777   66899999999999998543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.62  E-value=5.4e-16  Score=167.96  Aligned_cols=180  Identities=14%  Similarity=0.177  Sum_probs=108.3

Q ss_pred             hhHHHHhcccccccCccCcc-hhh-chhhhhhhhc---ccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLN-YYK-DSESKYKIET---FIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNN  397 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~-~~~-~l~~~~~~~~---~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n  397 (522)
                      .|..+..+++|+.|+++++. +.+ .++..+....   .++.+    +.|++++|.++.+|.   +..+++|+.|++++|
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L----~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI----QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC----CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC----CEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence            55667788888888888887 555 4555443321   11222    467777777766665   666667777777777


Q ss_pred             CCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCC-cCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCC
Q psy13451        398 PLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPS-LESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHV  468 (522)
Q Consensus       398 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~-L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~  468 (522)
                      .++|.+| .|..+++|+.|++++|.++.+| .+..+++ |+.|++++|.++.+|.       ++|+.|++++|.+++..+
T Consensus       341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             cCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence            7666666 5666666666666666666554 3555665 6666666666655441       245666666666655432


Q ss_pred             --CC-------CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451        469 --FP-------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       469 --l~-------~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  510 (522)
                        +.       .+++|+.|+|++|.++.++...+..+++|+.|+|++|.++
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence              33       4455666666666666555555555556666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=5.7e-16  Score=155.49  Aligned_cols=173  Identities=18%  Similarity=0.173  Sum_probs=139.8

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      ++|+.|+++++.........+..   ++.+    +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQR---CVNL----QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT---CTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             ccCcEEECCCCcCcccCHHHhcc---CCCC----CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence            58899998887755422212211   1222    699999999999754  88999999999999999965555588999


Q ss_pred             CccEEEcCCCCCCCCCC---CCCCCCcCEEEccCC-CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451        412 ACESLKLTHCSLSSLHV---FPHLPSLESLDVSHN-APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD  479 (522)
Q Consensus       412 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ls~N-~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~  479 (522)
                      +|++|++++|.++.++.   +..+++|+.|++++| .++.++      +++|+.|++++|.+++..+  +..+++|+.|+
T Consensus       125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence            99999999999998864   788999999999998 466553      4688999999999998754  88899999999


Q ss_pred             ccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +++|.++.++...+..+++|+.|++++|.++...
T Consensus       205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             CCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence            9999998887767777899999999999988643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=3.8e-15  Score=155.32  Aligned_cols=140  Identities=19%  Similarity=0.253  Sum_probs=83.7

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.+++++.+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++
T Consensus       246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC
T ss_pred             CEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC
Confidence            3555555555555445555555555555555553222  55555666666666666555555556666666666666554


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++    +++|+.|++++|.+++++.+..+++|+.|++++|.+++.++  +..+++|+.|++++|++++
T Consensus       324 ~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             chhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            43    35666666666666666556666667777777776666554  6666777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=4.6e-15  Score=135.36  Aligned_cols=131  Identities=18%  Similarity=0.246  Sum_probs=104.8

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc-cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR-HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~  444 (522)
                      +.+++++|+++.+|. .-..+++.|++++|.+++..+. .|..+++|+.|++++|.|+.++  .|..+++|+.|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            578999999999887 1234899999999999855553 4888999999999999999873  57888888888888888


Q ss_pred             CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++.++..                .+..+++|+.|+|++|.|+++++..+..+++|+.|+|++|++.|+|..
T Consensus        90 l~~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           90 IKEISNK----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCEECSS----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCccCHH----------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            7655432                156678888888888888888777888888888888888888888754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=1.2e-15  Score=144.25  Aligned_cols=170  Identities=15%  Similarity=0.147  Sum_probs=138.7

Q ss_pred             hHHHHhcccccccCccCcchhhchhh-hhhhhcccccCCCCCcEEEecC-CCcccccC--cCCCCcccEEEecCCCCCCc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSES-KYKIETFIQTNPRANQITNLSS-LQLTSIHH--MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~-~~~~~~~l~~l~~~~~~L~ls~-n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      +..+..+++|+.|++.++.....++. .+.   .++.+    +.|++++ |.++.++.  +..+++|+.|++++|.+++ 
T Consensus        48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~---~l~~L----~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-  119 (239)
T 2xwt_C           48 SHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKV----THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-  119 (239)
T ss_dssp             TTTTTTCTTCCEEEEECCSSCCEECTTTEE---SCTTC----CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-
T ss_pred             HHHccCCCCCcEEeCCCCCCcceeCHhHcC---CCcCC----cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-
Confidence            34567899999999998863333332 111   12222    6999998 99999875  8899999999999999995 


Q ss_pred             ccccCCCCCCcc---EEEcCCC-CCCCCC--CCCCCCCcC-EEEccCCCCCccc-----cCcccEEEcCCCC-CCCCCC-
Q psy13451        403 CLRHLTPLVACE---SLKLTHC-SLSSLH--VFPHLPSLE-SLDVSHNAPNIIL-----CVYFQSLKLTHCS-LSSLHV-  468 (522)
Q Consensus       403 ~~~~~~~l~~L~---~L~l~~n-~l~~~~--~~~~l~~L~-~L~ls~N~l~~~~-----~~~L~~L~Ls~n~-l~~~~~-  468 (522)
                      +|. |..+++|+   .|++++| .++.++  .|..+++|+ .|++++|.++.++     ..+|+.|++++|. ++.+++ 
T Consensus       120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence            676 88888888   9999999 999886  388999999 9999999998766     3578999999995 998875 


Q ss_pred             -CCCC-CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCC
Q psy13451        469 -FPHL-PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP  508 (522)
Q Consensus       469 -l~~~-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  508 (522)
                       +..+ ++|+.|++++|.++.++..   .+++|+.|.++++.
T Consensus       199 ~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             HhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence             7888 9999999999999998864   57788899988763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=3e-15  Score=156.06  Aligned_cols=173  Identities=20%  Similarity=0.216  Sum_probs=149.5

Q ss_pred             HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451        329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      .+..+++|+.|++.++......+  +   ..++.+    +.|++++|.++.++.+..+++|+.|++++|.+++..+  +.
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~--~---~~l~~L----~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP--L---GILTNL----DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--G---GGCTTC----CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             hhccCCCCCEEEecCCccccccc--c---cccCCC----CEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hh
Confidence            36889999999999887654332  1   112222    6999999999999888999999999999999996544  88


Q ss_pred             CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451        409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA  484 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~  484 (522)
                      .+++|+.|++++|.++.++.+..+++|+.|++++|.++.++    +++|+.|++++|.+++.+++..+++|+.|++++|.
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc
Confidence            99999999999999999888899999999999999998765    58899999999999998888899999999999999


Q ss_pred             CCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        485 IDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       485 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      ++++  ..+..+++|+.|++++|+++....
T Consensus       343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          343 VSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            9987  478899999999999999976543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.61  E-value=1.3e-14  Score=150.64  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=92.4

Q ss_pred             HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451        329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      .++.+++|+.||++++...+ ++ .+.   .++.+    +.|++++|.++++| +..+++|+.|++++|.+++. +  ++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~---~l~~L----~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~--~~  103 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT-GIE---KLTGL----TKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D--VT  103 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT-TGG---GCTTC----SEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch-hhc---ccCCC----CEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e--cC
Confidence            45667777777776665443 11 111   11111    35555555555554 45555555555555555532 2  45


Q ss_pred             CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc-------------------------cCcccEEEcCCCCC
Q psy13451        409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL-------------------------CVYFQSLKLTHCSL  463 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~-------------------------~~~L~~L~Ls~n~l  463 (522)
                      .+++|++|++++|.++.++ ++.+++|+.|++++|.++.++                         +++|+.|++++|.+
T Consensus       104 ~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence            5555555555555555543 455555555555555554432                         34556666666666


Q ss_pred             CCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        464 SSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       464 ~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++++ +..+++|+.|++++|.+++++   ++.+++|+.|++++|.++..
T Consensus       183 ~~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~i  227 (457)
T 3bz5_A          183 TELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI  227 (457)
T ss_dssp             CCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred             ceec-cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCccccc
Confidence            6654 556666666666666666652   56667777777777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=1.3e-15  Score=139.53  Aligned_cols=149  Identities=15%  Similarity=0.247  Sum_probs=124.7

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      ...+++|+.|++.++... +++. +   ..++.+    +.|++++|.++.++.+..+++|+.|++++|.+++..+..++.
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~~-l---~~l~~L----~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLTG-I---EYAHNI----KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCTT-G---GGCTTC----SEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhhcCCccEEeccCCCcc-ChHH-H---hcCCCC----CEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcC
Confidence            378899999999887655 3331 1   122222    599999999998888999999999999999999878889999


Q ss_pred             CCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCC-CCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccC
Q psy13451        410 LVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNA-PNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH  482 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~-l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~  482 (522)
                      +++|+.|++++|.++.  ++.+..+++|+.|++++|. ++.++    +++|+.|++++|.+++++.+..+++|+.|++++
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence            9999999999999997  3468899999999999998 87765    578999999999999988888999999999999


Q ss_pred             CCCCC
Q psy13451        483 NAIDH  487 (522)
Q Consensus       483 N~l~~  487 (522)
                      |+|++
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            99875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=3.6e-15  Score=165.31  Aligned_cols=181  Identities=17%  Similarity=0.136  Sum_probs=114.8

Q ss_pred             hhHHHHhcccccccCccCcc-hhh-chhhhhhhhc-ccccCCCCC-cEEEecCCCcccccC---cCCCCcccEEEecCCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLN-YYK-DSESKYKIET-FIQTNPRAN-QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNP  398 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~-~~~-~l~~~~~~~~-~l~~l~~~~-~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~  398 (522)
                      .|..+..+++|+.|+++++. +.+ .++..+.... .+..  .+. +.|++++|.++.+|.   +..+++|+.|+|++|.
T Consensus       507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~--l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT--GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT--TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc--cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence            56777888889999888887 554 4555443321 1111  012 577777777777765   6777777777777777


Q ss_pred             CCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCC-cCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCC-
Q psy13451        399 LTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPS-LESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHV-  468 (522)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~-L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~-  468 (522)
                      ++ .+| .|+.+++|+.|++++|.++.+| .+..+++ |+.|++++|.++.+|.       ++|+.|++++|.+++..+ 
T Consensus       585 l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          585 VR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             cc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            77 666 6777777777777777777665 4666666 7777777777765541       236667777776655322 


Q ss_pred             CC------CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451        469 FP------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       469 l~------~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  510 (522)
                      +.      .+++|+.|+|++|.++.++...+..+++|+.|+|++|.++
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence            11      2335666666666666655555555666666666666555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1.2e-15  Score=146.57  Aligned_cols=140  Identities=20%  Similarity=0.263  Sum_probs=127.5

Q ss_pred             EEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCcc
Q psy13451        369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII  448 (522)
Q Consensus       369 ~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~  448 (522)
                      .++++++.++.++.+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+
T Consensus        23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred             HHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc
Confidence            46778889998888888999999999999998 555 6889999999999999999998899999999999999999876


Q ss_pred             c---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        449 L---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       449 ~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +   .++|+.|++++|.+++++.+..+++|+.|+|++|.|++++  .++.+++|+.|++++|+++..
T Consensus       101 ~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          101 NGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            5   3789999999999999888999999999999999999985  688999999999999999876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=2.4e-15  Score=162.03  Aligned_cols=144  Identities=17%  Similarity=0.213  Sum_probs=127.5

Q ss_pred             cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc-ccCCCCCCccEEEcCCCCCCCC-C-CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL-RHLTPLVACESLKLTHCSLSSL-H-VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.+|. +..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++.. + .+..+++|+.|++++|
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            689999999988876 8889999999999999987766 6788999999999999998874 3 5888999999999999


Q ss_pred             CCCc--cc-----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        444 APNI--IL-----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       444 ~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      .++.  ++     +++|+.|++++|.++++++  +..+++|+.|+|++|.++++++..++.+++|+.|++++|+++.
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            9875  23     4789999999999998865  8899999999999999999988899999999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=5.4e-15  Score=136.63  Aligned_cols=140  Identities=21%  Similarity=0.186  Sum_probs=120.0

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..+++|++|++++|.++.++.  +..+++|+.|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            799999999999876  7889999999999999996666678899999999999999999863  788999999999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      .++.++      .++|+.|++++|.++++++  +..+++|+.|++++|.+..       .+++|+.|+++.|.+++...
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred             cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence            998765      4688999999999998876  7889999999999997664       45677788888877775543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=149.06  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=136.6

Q ss_pred             hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccc-c---C--cCCCCcccEEEecCCCCCCcccc
Q psy13451        332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSI-H---H--MHCFAHCKQVDLSNNPLTNNCLR  405 (522)
Q Consensus       332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l-~---~--~~~l~~L~~L~Ls~n~l~~~~~~  405 (522)
                      .+++|+.|++.++...+..+..+.. ..+..+    ++|++++|.++.. +   .  +..+++|+.|++++|.+++..+.
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L----~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  163 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLE-ATGLAL----SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE  163 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSS-CCCBCC----SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred             ccCceeEEEeeCCEeccchhhhhhh-ccCCCC----CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence            3467999999988776655443210 111222    6899999999872 2   1  45789999999999999988888


Q ss_pred             cCCCCCCccEEEcCCCCCCC---CC---CCCCCCCcCEEEccCCCCCccc---------cCcccEEEcCCCCCCCCCC--
Q psy13451        406 HLTPLVACESLKLTHCSLSS---LH---VFPHLPSLESLDVSHNAPNIIL---------CVYFQSLKLTHCSLSSLHV--  468 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~n~l~~---~~---~~~~l~~L~~L~ls~N~l~~~~---------~~~L~~L~Ls~n~l~~~~~--  468 (522)
                      .|..+++|++|++++|.+.+   ++   .+..+++|++|++++|.++.++         .++|+.|+|++|.|++..+  
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            99999999999999999765   22   2468899999999999998543         3889999999999999732  


Q ss_pred             CCCC---CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        469 FPHL---PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       469 l~~~---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +..+   ++|+.|+|++|.|+.++...   .++|+.|+|++|+++..
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC
T ss_pred             HHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC
Confidence            4444   79999999999999887533   27999999999999873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2.9e-15  Score=166.06  Aligned_cols=142  Identities=19%  Similarity=0.205  Sum_probs=99.7

Q ss_pred             cEEEecCCCccc------------------ccC-cC--CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC-CCC
Q psy13451        368 QITNLSSLQLTS------------------IHH-MH--CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS-LSS  425 (522)
Q Consensus       368 ~~L~ls~n~l~~------------------l~~-~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~  425 (522)
                      +.|++++|.|++                  +|. +.  .+++|+.|+|++|.+.+.+|..|+.+++|+.|++++|. +++
T Consensus       451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence            688888888887                  777 55  78888888888888888888888888888888888886 664


Q ss_pred             --CC--------CCCCCCCcCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCC
Q psy13451        426 --LH--------VFPHLPSLESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI  488 (522)
Q Consensus       426 --~~--------~~~~l~~L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~  488 (522)
                        +|        .+..+++|+.|++++|.++.+|.       ++|+.|+|++|.++.++.++.+++|+.|+|++|.++.+
T Consensus       531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~l  610 (876)
T 4ecn_A          531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI  610 (876)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCC
T ss_pred             ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccc
Confidence              33        23445577777777777665542       45677777777766665566666667777777666654


Q ss_pred             ChhhhcCCCC-ccEEEecCCCCc
Q psy13451        489 EDSVFAKYEA-CVQVILTGNPVS  510 (522)
Q Consensus       489 ~~~~l~~l~~-L~~L~L~~N~l~  510 (522)
                      + ..+..+++ |+.|+|++|.++
T Consensus       611 p-~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          611 P-EDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             C-TTSCEECTTCCEEECCSSCCC
T ss_pred             h-HHHhhccccCCEEECcCCCCC
Confidence            4 34555666 666666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=9.6e-15  Score=154.76  Aligned_cols=135  Identities=22%  Similarity=0.270  Sum_probs=101.4

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.|+++|.+..  +|+.|+|++|.+++ +|.   .+++|+.|++++|.|+.+|.  .+++|+.|++++|.++.
T Consensus       103 ~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          103 EYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC
T ss_pred             CEEEccCCCCCCcchhhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC
Confidence            577777777777776332  77778888887774 554   56778888888888887775  56788888888888877


Q ss_pred             cc--cCcccEEEcCCCCCCCCCCCCCCCCC-------CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSL-------ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++  .++|+.|+|++|.|+.++.+..  +|       +.|+|++|.|+.+|. .+..+++|+.|+|++|++++..
T Consensus       175 lp~l~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          175 LPELPESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHH
T ss_pred             cchhhCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcC
Confidence            65  2678888888888888776332  67       899999999998875 4555999999999999998654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=6.9e-15  Score=158.88  Aligned_cols=145  Identities=23%  Similarity=0.246  Sum_probs=113.4

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      ++|+|++|.|+.+|.  |..+++|++|+|++|.|++..+++|.++++|++|+|++|+|+.++  .|..+++|++|++++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            788888888888865  888888888888888888666677888888888888888888876  3788888888888888


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCChhhhcCCCCc----cEEEecCCCCc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC----VQVILTGNPVS  510 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~N~l~  510 (522)
                      .++.++      +++|+.|++++|.++.+.  . +..+++|+.|+|++|.|+++++..+..+.++    ..++++.|+++
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            887765      367888888888887653  2 6677888888888888888776666554433    36778888776


Q ss_pred             cc
Q psy13451        511 AD  512 (522)
Q Consensus       511 ~~  512 (522)
                      ..
T Consensus       215 ~i  216 (635)
T 4g8a_A          215 FI  216 (635)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.59  E-value=5.5e-15  Score=159.21  Aligned_cols=144  Identities=24%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCccccc-CCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.+++++.  +..+++|+.|++++|.+++..+.. +..+++|+.|++++|.++..+  .+..+++|+.|++++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            566777776666433  666677777777777766554433 666777777777777776643  366677777777777


Q ss_pred             CCCCcc--c-------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        443 NAPNII--L-------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       443 N~l~~~--~-------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      |.++..  +       +++|+.|++++|.++++++  +..+++|+.|+|++|.+++.++..+..++.| .|++++|.++.
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            776541  1       3667777777777777654  6777777777887777777777777777777 77777777764


Q ss_pred             c
Q psy13451        512 D  512 (522)
Q Consensus       512 ~  512 (522)
                      .
T Consensus       538 ~  538 (606)
T 3t6q_A          538 I  538 (606)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=7.1e-15  Score=132.33  Aligned_cols=172  Identities=10%  Similarity=0.027  Sum_probs=158.7

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      ++..++|+..+.+....|.          +++++..++++++.+|++..+|..++.++...   +++++++..+.+++..
T Consensus         2 ge~~~iy~~lG~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~a~~~~~~~~~~   68 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGD----------FDGAIRAYKKVLKADPNNVETLLKLGKTYMDI---GLPNDAIESLKKFVVL   68 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhc
Confidence            4678999999999999998          89999999999999999999999999999999   9999999999999999


Q ss_pred             cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451        136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~  215 (522)
                      +|.+..+|...+.+....+. ++.+.+.+.+++..+|.+..+|..++.+...+            +.++++++++++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~~l~  135 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDE-KQAAIDALQRAIALNTVYADAYYKLGLVYDSM------------GEHDKAIEAYEKTIS  135 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh------------CCchhHHHHHHHHHH
Confidence            99999999999999999887 68999999999999999999999999999988            889999999999999


Q ss_pred             cCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451        216 TEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST  264 (522)
Q Consensus       216 ~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (522)
                      .+|.+..+|+.++.++...++...           |+..|.++++++|+
T Consensus       136 ~~p~~~~~~~~lg~~~~~~g~~~~-----------A~~~~~~al~~~p~  173 (184)
T 3vtx_A          136 IKPGFIRAYQSIGLAYEGKGLRDE-----------AVKYFKKALEKEEK  173 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHTTHH
T ss_pred             hcchhhhHHHHHHHHHHHCCCHHH-----------HHHHHHHHHhCCcc
Confidence            999999999999999999888766           55567777777663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=2.2e-14  Score=152.03  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=131.8

Q ss_pred             hHHHHhcc-----cccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCC
Q psy13451        327 EIILKRFD-----LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN  401 (522)
Q Consensus       327 ~~~l~~l~-----~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~  401 (522)
                      +..+..++     +|+.|++.++.+.. ++..+     ++.+    +.|++++|.|+.+|  ..+++|+.|++++|.+++
T Consensus        47 ~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l-----~~~L----~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           47 NEAVSLLKECLINQFSELQLNRLNLSS-LPDNL-----PPQI----TVLEITQNALISLP--ELPASLEYLDACDNRLST  114 (571)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC-----CTTC----SEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred             cchhhhccccccCCccEEEeCCCCCCc-cCHhH-----cCCC----CEEECcCCCCcccc--cccCCCCEEEccCCCCCC
Confidence            33455554     89999999876543 33211     1112    69999999999999  668999999999999995


Q ss_pred             cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEE
Q psy13451        402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLD  479 (522)
Q Consensus       402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~  479 (522)
                       +|. +..  +|+.|++++|.|+.+|.  .+++|+.|++++|.++.++  +++|+.|+|++|.|++++.+.  ++|+.|+
T Consensus       115 -ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~  186 (571)
T 3cvr_A          115 -LPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALD  186 (571)
T ss_dssp             -CCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEE
T ss_pred             -cch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEE
Confidence             777 665  99999999999999987  7899999999999999887  578999999999999988754  8999999


Q ss_pred             ccCCCCCCCChhhhcCCCCc-------cEEEecCCCCcc
Q psy13451        480 VSHNAIDHIEDSVFAKYEAC-------VQVILTGNPVSA  511 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L-------~~L~L~~N~l~~  511 (522)
                      |++|.|+.++.  +..  +|       +.|+|++|.|+.
T Consensus       187 Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~  221 (571)
T 3cvr_A          187 VSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH  221 (571)
T ss_dssp             CCSSCCSSCCC--CC----------CCEEEECCSSCCCC
T ss_pred             CcCCCCCchhh--HHH--hhhcccccceEEecCCCccee
Confidence            99999998875  443  67       999999999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=8.3e-15  Score=158.26  Aligned_cols=148  Identities=21%  Similarity=0.235  Sum_probs=129.8

Q ss_pred             cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEcc
Q psy13451        368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVS  441 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls  441 (522)
                      +.++++++.......   +..+++++.++++.|.+++..+..+..++.++.|++++|.+..  .| .+..+++|+.|+++
T Consensus       423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls  502 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  502 (635)
T ss_dssp             CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence            678888776665432   7788999999999999998888889999999999999997543  33 58899999999999


Q ss_pred             CCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCC-CCccEEEecCCCCccc
Q psy13451        442 HNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKY-EACVQVILTGNPVSAD  512 (522)
Q Consensus       442 ~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~  512 (522)
                      +|+++.++      +++|+.|+|++|+|+++++  +..+++|+.|+|++|+|+.+++..+..+ ++|+.|+|++||+.|+
T Consensus       503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999775      4789999999999999986  8899999999999999999998889888 6899999999999999


Q ss_pred             ccc
Q psy13451        513 MVV  515 (522)
Q Consensus       513 ~~~  515 (522)
                      |..
T Consensus       583 C~~  585 (635)
T 4g8a_A          583 CEH  585 (635)
T ss_dssp             GGG
T ss_pred             CCc
Confidence            964

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=2.5e-14  Score=128.56  Aligned_cols=130  Identities=22%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++++++.+|. ...++|+.|++++|.+++..+..|..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            578899999998886 334789999999999986666677888999999999999988763  67788888888877777


Q ss_pred             CccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       446 ~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +.++..                .+..+++|+.|++++|.++.+++..+..+++|+.|++++|++.|++.
T Consensus        89 ~~~~~~----------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           89 QSLPNG----------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCTT----------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCHH----------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            544321                15667788888888888888877777788888888888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=1.1e-15  Score=165.39  Aligned_cols=180  Identities=12%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             hhHHHHhcccccccCccCcchhhc-----------------hhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKD-----------------SESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCF  386 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~-----------------l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l  386 (522)
                      .|..++.+++|+.|+++++.+.+.                 ++..+.+ ..+..+    ++|++++|.+.+ +|. +..+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~-~~l~~L----~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-DNLKDL----TDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTC----CEEEEECCTTCSSCCTTTTTC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh-cccCCC----CEEEecCCcCCccChHHHhcC
Confidence            566789999999999999887763                 3332220 011111    588888887665 565 7778


Q ss_pred             CcccEEEecCCC-CCC-cccccCCCC------CCccEEEcCCCCCCCCCC---CCCCCCcCEEEccCCCCC-ccc----c
Q psy13451        387 AHCKQVDLSNNP-LTN-NCLRHLTPL------VACESLKLTHCSLSSLHV---FPHLPSLESLDVSHNAPN-IIL----C  450 (522)
Q Consensus       387 ~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ls~N~l~-~~~----~  450 (522)
                      ++|+.|++++|. +++ .+|..++.+      ++|+.|++++|.++.+|.   ++.+++|+.|++++|.++ .++    +
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l  352 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE  352 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence            888888888887 776 677666554      777788888777777765   677777777777777776 333    2


Q ss_pred             CcccEEEcCCCCCCCCCC-CCCCCC-CCEEEccCCCCCCCChhhhcCCC--CccEEEecCCCCcc
Q psy13451        451 VYFQSLKLTHCSLSSLHV-FPHLPS-LESLDVSHNAIDHIEDSVFAKYE--ACVQVILTGNPVSA  511 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~-l~~~~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~  511 (522)
                      ++|+.|++++|.++.++. +..+++ |+.|++++|.++.++ ..+..++  +|+.|++++|.++.
T Consensus       353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCC
Confidence            445555666665555443 445555 555555555555444 2333322  45555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=7.7e-15  Score=130.73  Aligned_cols=126  Identities=22%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             CCcccEEEecCCCCC-CcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc-cc-----cCcccEEEc
Q psy13451        386 FAHCKQVDLSNNPLT-NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI-IL-----CVYFQSLKL  458 (522)
Q Consensus       386 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~-~~-----~~~L~~L~L  458 (522)
                      +++|+.|++++|.++ +.+|..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++. ++     +++|+.|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            345666666666655 44555555566666666666666655555666666666666666655 22     456666777


Q ss_pred             CCCCCCCCC---CCCCCCCCCEEEccCCCCCCCCh---hhhcCCCCccEEEecCCCCcc
Q psy13451        459 THCSLSSLH---VFPHLPSLESLDVSHNAIDHIED---SVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       459 s~n~l~~~~---~l~~~~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++|.+++++   .+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|.+..
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            777766654   27788999999999999999886   588999999999999998753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=4.4e-14  Score=146.61  Aligned_cols=164  Identities=16%  Similarity=0.094  Sum_probs=94.2

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      ++.+++|+.|+++++..... +  +   ..++.+    +.|++++|.++++| +..+++|+.|++++|.+++ ++  ++.
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~--~---~~l~~L----~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~-l~--l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D--V---TPLTKL----TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTE-ID--VSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C--C---TTCTTC----CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSC-CC--CTT
T ss_pred             cccCCCCCEEECcCCCCcee-e--c---CCCCcC----CEEECCCCcCCeec-CCCCCcCCEEECCCCccce-ec--ccc
Confidence            35566666666666554331 0  0   111111    46666666666654 5666666666666666664 22  555


Q ss_pred             CCCccEEEcCCC-CCCCCCCCCCCCCcCEEEccCCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHC-SLSSLHVFPHLPSLESLDVSHNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ls~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      +++|+.|++++| .+..+ .+..+++|+.|++++|.++.++   +++|+.|++++|.++++ +++.+++|+.|++++|.+
T Consensus       147 l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCC
T ss_pred             CCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcc
Confidence            566666666666 33333 3555666666666666666554   34566666666666665 355566666666666666


Q ss_pred             CCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        486 DHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++++   ++.+++|+.|++++|++++.
T Consensus       225 ~~ip---~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          225 TEID---VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             SCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred             cccC---ccccCCCCEEEeeCCcCCCc
Confidence            6654   45566666666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=2.5e-14  Score=133.49  Aligned_cols=120  Identities=21%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.|+.++.  +..+++|+.|+|++|.+++..|..|.++++|+.|+|++|.|+.++.  |..+++|+.|++++|
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence            799999999999875  8899999999999999998889999999999999999999999874  788999999999999


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCC
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDH  487 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~  487 (522)
                      .++.++      +++|+.|+|++|.|+.+++  +..+++|+.|+|++|.+..
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            998775      4789999999999999886  8889999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=1.2e-13  Score=128.92  Aligned_cols=191  Identities=9%  Similarity=-0.049  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIP-DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG  104 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np-~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~  104 (522)
                      .+..........|++ ++|+..+.+++.++| .+..+|..++.+...++.          +++++..+++++..+|++..
T Consensus         9 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~   77 (228)
T 4i17_A            9 QLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK----------YKEAADYFDIAIKKNYNLAN   77 (228)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTTCSHHH
T ss_pred             HHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHhCcchHH
Confidence            344455566677777 889999999999999 999999999999999988          79999999999999999999


Q ss_pred             chhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc-------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cc
Q psy13451        105 TWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF-------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NY  175 (522)
Q Consensus       105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~-------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~  175 (522)
                      +|..++.++...   +++++++..++++++.+|++.       .+|...+.+....+. +++++++++++++.+|.  +.
T Consensus        78 ~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~  153 (228)
T 4i17_A           78 AYIGKSAAYRDM---KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDVTSKKWKT  153 (228)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhcCCCcccH
Confidence            999999999999   999999999999999999999       679999999999988 79999999999999999  88


Q ss_pred             hHhhHHHHHhchhCCC--------CCCC-------CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        176 SAWHYRSKLLPLLYPD--------PNNH-------LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       176 saW~~r~~ll~~l~~~--------~~~~-------~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                      .+|...+.+.......        ....       .....+.++++++++++++..+|+|..+......+-
T Consensus       154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            9999999887655111        0000       000113348999999999999999998887665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=8.1e-14  Score=144.50  Aligned_cols=157  Identities=18%  Similarity=0.188  Sum_probs=114.9

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA  412 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  412 (522)
                      ++|+.|+++++....           ++.+. +. ++|++++|.++++|.+..+++|+.|++++|.+++ +|..+   .+
T Consensus       111 ~~L~~L~l~~n~l~~-----------l~~~~-~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~---~~  174 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-----------LSDLP-PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP---PS  174 (454)
T ss_dssp             TTCCEEECCSSCCSC-----------CCSCC-TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC---TT
T ss_pred             CCCcEEECCCCccCc-----------ccCCC-CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc---cc
Confidence            667777776654332           11111 22 6888888888888888888888889998888884 55433   58


Q ss_pred             ccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCCh
Q psy13451        413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED  490 (522)
Q Consensus       413 L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~  490 (522)
                      |++|++++|.++.+|.++.+++|+.|++++|.+++++  +.+|+.|++++|.++.++.+..+++|+.|++++|.+++++.
T Consensus       175 L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS
T ss_pred             ccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc
Confidence            8888888888888888888888888888888888765  46788888888888877777788888888888888877652


Q ss_pred             hhhcCCCCccEEEecCCCCc
Q psy13451        491 SVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       491 ~~l~~l~~L~~L~L~~N~l~  510 (522)
                          ..++|+.|++++|.++
T Consensus       255 ----~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          255 ----LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             ----CCTTCCEEECCSSCCS
T ss_pred             ----cccccCEEECCCCccc
Confidence                1245555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.3e-14  Score=126.60  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=96.4

Q ss_pred             CCcccEEEecCCCCC-CcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc-cc-----cCcccEEEc
Q psy13451        386 FAHCKQVDLSNNPLT-NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI-IL-----CVYFQSLKL  458 (522)
Q Consensus       386 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~-~~-----~~~L~~L~L  458 (522)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.++.++.++.+++|+.|++++|.++. ++     +++|+.|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            467777788888776 56777777778888888888887777667777888888888888776 33     577888888


Q ss_pred             CCCCCCCCC---CCCCCCCCCEEEccCCCCCCCCh---hhhcCCCCccEEEecC
Q psy13451        459 THCSLSSLH---VFPHLPSLESLDVSHNAIDHIED---SVFAKYEACVQVILTG  506 (522)
Q Consensus       459 s~n~l~~~~---~l~~~~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~  506 (522)
                      ++|.+++++   .+..+++|+.|++++|.++++++   ..++.+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888753   37889999999999999999886   6789999999998864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=5e-14  Score=153.61  Aligned_cols=165  Identities=10%  Similarity=0.078  Sum_probs=150.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      .+........|++ ++|++.+.++|+++|++..+|+.++.++..+++          +++++..++++|+.+|++..+|+
T Consensus        13 ~nLG~~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~   81 (723)
T 4gyw_A           13 NNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK----------LQEALMHYKEAIRISPTFADAYS   81 (723)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHH
Confidence            3445556677777 899999999999999999999999999999998          79999999999999999999999


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL  187 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~  187 (522)
                      .++.++..+   +++++++++++++++++|++..+|...+.++...+. +++++++++++++.+|.+..+|.+++.++..
T Consensus        82 nLg~~l~~~---g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           82 NMGNTLKEM---QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            999999999   999999999999999999999999999999999998 7999999999999999999999999999998


Q ss_pred             hCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451        188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK  219 (522)
Q Consensus       188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~  219 (522)
                      +            +.++++.+.+++++.+.|+
T Consensus       158 ~------------g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          158 V------------CDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             T------------TCCTTHHHHHHHHHHHHHH
T ss_pred             c------------ccHHHHHHHHHHHHHhChh
Confidence            8            5566677777777766554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=8e-14  Score=130.85  Aligned_cols=121  Identities=24%  Similarity=0.224  Sum_probs=109.5

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.|+.++.  +..+++|+.|+|++|.++...+..|..+++|+.|+|++|.|+.++.  |..+++|+.|++++|
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            799999999999854  8899999999999999986655778999999999999999999863  789999999999999


Q ss_pred             CCCccc-----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCC
Q psy13451        444 APNIIL-----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHI  488 (522)
Q Consensus       444 ~l~~~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~  488 (522)
                      .++.++     .++|+.|+|++|.|+.+++  +..+++|+.|+|++|.+...
T Consensus       123 ~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          123 KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999876     5789999999999999875  88899999999999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=5.9e-15  Score=165.07  Aligned_cols=145  Identities=22%  Similarity=0.251  Sum_probs=82.7

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC-----------------
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV-----------------  428 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------  428 (522)
                      +.|++++|.++.+++  +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++.                 
T Consensus       317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l  396 (844)
T 3j0a_A          317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL  396 (844)
T ss_dssp             CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred             CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence            456666666655422  5566666666666666654444555566666666666665554321                 


Q ss_pred             -------------------------CCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCCC-------CC
Q psy13451        429 -------------------------FPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLH-------VF  469 (522)
Q Consensus       429 -------------------------~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~~-------~l  469 (522)
                                               +..+++|+.|++++|.++.++       .++|+.|++++|.++...       .+
T Consensus       397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~  476 (844)
T 3j0a_A          397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF  476 (844)
T ss_dssp             CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred             cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence                                     113344444555555444221       234455555555544221       14


Q ss_pred             CCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        470 PHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       470 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ..+++|+.|+|++|.++++++..|..+++|+.|+|++|.++..
T Consensus       477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence            5566677777777777777767777778888888888877643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=1.1e-14  Score=154.90  Aligned_cols=172  Identities=16%  Similarity=0.198  Sum_probs=131.9

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      ++|+.||++++......+..+..   +..+    ++|++++|.++.+++  +..+++|++|++++|.+++..|..|+.++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRA---CANL----QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSS---CTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCccEEECcCCccCccChhhhhc---CCcc----cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            68888998887755433322211   1222    689999999998764  88899999999999999877777788999


Q ss_pred             CccEEEcCCCCCCCC---CCCCCCCCcCEEEccCCC-CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451        412 ACESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA-PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD  479 (522)
Q Consensus       412 ~L~~L~l~~n~l~~~---~~~~~l~~L~~L~ls~N~-l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~  479 (522)
                      +|++|++++|.++.+   +.++.+++|+.|++++|. ++.++      +++|+.|++++|.+++..+  +..+++|+.|+
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence            999999999998864   357888999999999987 55443      4678899999999887543  77788888888


Q ss_pred             ccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +++|.+..++...++.+++|+.|++++|.++..
T Consensus       179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          179 LHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             cccCcccccchhhHhhcccccEEEccCCccccc
Confidence            888887776655566778888888888887763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=5.7e-14  Score=131.02  Aligned_cols=121  Identities=19%  Similarity=0.236  Sum_probs=109.5

Q ss_pred             cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.|+.++.   +..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++.++.  |..+++|+.|++++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            799999999999843   7899999999999999997777789999999999999999999863  88999999999999


Q ss_pred             CCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCC
Q psy13451        443 NAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHI  488 (522)
Q Consensus       443 N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~  488 (522)
                      |.++.++      +++|+.|+|++|.|+++++  +..+++|+.|+|++|.+...
T Consensus       115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9998774      4789999999999999855  88999999999999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.53  E-value=1.4e-13  Score=147.59  Aligned_cols=135  Identities=23%  Similarity=0.169  Sum_probs=104.9

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.|+.+|  ..+++|+.|++++|.++ .+|..   +++|+.|++++|.++.+|..  +++|+.|++++|.++.
T Consensus       164 ~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~  235 (622)
T 3g06_A          164 CKLWAYNNQLTSLP--MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS  235 (622)
T ss_dssp             CEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC
T ss_pred             CEEECCCCCCCCCc--ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc
Confidence            45555555555555  33467777777777776 34432   36777777777777777642  4789999999999988


Q ss_pred             cc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++  +++|+.|++++|.|+.++.  .+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++++..
T Consensus       236 lp~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          236 LPVLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHH
T ss_pred             CCCCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcC
Confidence            76  5789999999999998876  6789999999999999886 56899999999999999998654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.53  E-value=8.3e-14  Score=151.87  Aligned_cols=160  Identities=11%  Similarity=0.024  Sum_probs=152.4

Q ss_pred             hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451         54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL  133 (522)
Q Consensus        54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l  133 (522)
                      -+|++..+|+..+.++...++          +++++..++++|+.+|++..+|+.++.++..+   ++++++++.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~----------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~---g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGN----------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ---GKLQEALMHYKEAI   70 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence            479999999999999999998          89999999999999999999999999999999   99999999999999


Q ss_pred             hhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHH
Q psy13451        134 ELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA  213 (522)
Q Consensus       134 ~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~a  213 (522)
                      +++|++..+|...+.++..++. +++++++++++++.+|.+..||++++.++..+            ++++++++++++|
T Consensus        71 ~l~P~~~~a~~nLg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~------------g~~~eAi~~~~~A  137 (723)
T 4gyw_A           71 RISPTFADAYSNMGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDS------------GNIPEAIASYRTA  137 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHH
Confidence            9999999999999999999998 79999999999999999999999999999988            8899999999999


Q ss_pred             HhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        214 VFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       214 i~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +.++|++..+|..+..++...++...
T Consensus       138 l~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A          138 LKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999988877654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=4.9e-14  Score=148.85  Aligned_cols=145  Identities=22%  Similarity=0.244  Sum_probs=119.6

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC----CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|++..++.+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++.++    .+..+++|+.|++++|
T Consensus       305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            566777776666554468899999999999999888999999999999999999999754    3788999999999999


Q ss_pred             CCCc-cc------cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        444 APNI-IL------CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       444 ~l~~-~~------~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .++. ++      +++|+.|++++|.+++..+-.-.++|+.|+|++|.|+.++.. +..+++|+.|++++|+++...
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCC
T ss_pred             cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccC
Confidence            9987 55      368999999999997654311127999999999999988754 458999999999999998543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=9.4e-15  Score=131.31  Aligned_cols=126  Identities=20%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCC-CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccE
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPL-VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQS  455 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~  455 (522)
                      +..+++|+.|++++|.++ .+|. +..+ ++|+.|++++|.++.++.+..+++|+.|++++|.++.++      +++|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            445566666666666666 3333 3333 366666666666666666666666666677666666544      356677


Q ss_pred             EEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCChh---hhcCCCCccEEEecCCCCc
Q psy13451        456 LKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIEDS---VFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       456 L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~L~~N~l~  510 (522)
                      |++++|.|+.++.   +..+++|+.|++++|.++.++..   .+..+++|+.|++++|.+.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777766553   67788999999999999887743   5888999999999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=7.3e-14  Score=144.84  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCC
Q psy13451        388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSL  463 (522)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l  463 (522)
                      +|+.|++++|.+++ +| .|+.+++|++|++++|.++++|..  .++|+.|++++|.++.++    +++|+.|++++|.+
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence            44444444444442 33 244444444444444444444321  124444444444444433    23444555555555


Q ss_pred             CCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        464 SSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       464 ~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++++..  .++|+.|++++|.++.++  .++.+++|+.|++++|.++.
T Consensus       208 ~~l~~~--~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          208 KKLPDL--PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             SSCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred             CcCCCC--cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc
Confidence            444332  135566666666666554  36777888888888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=6.2e-14  Score=149.66  Aligned_cols=143  Identities=24%  Similarity=0.260  Sum_probs=68.9

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.++.++.  +..+++|+.|++++|.+++..+..|..+++|++|++++|.++.++  .|..+++|++|++++|
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence            445555555554432  445555555555555555443444555555555555555554432  3445555555555555


Q ss_pred             CCCccc------cCcccEEEcCCCCCCCC--CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCc----cEEEecCCCCc
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLSSL--HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC----VQVILTGNPVS  510 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~~~--~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~N~l~  510 (522)
                      .++.++      +.+|+.|++++|.++++  +. ++.+++|++|++++|.++.+++..++.+++|    ..|++++|.++
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~  190 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence            544332      23445555555555442  22 4445555555555555555444444444444    44555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=9.9e-14  Score=140.26  Aligned_cols=168  Identities=12%  Similarity=0.052  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+..+.+++.++|++..+|..++.++...+.          +++++..++.+++.+|+++.+|...+.++...   ++
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~  150 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD----------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL---GR  150 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC----------SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT---SC
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cC
Confidence            444555555555555555555555555444444          24444444444444444444444444444444   44


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      ++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..++.++...            +
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------~  217 (388)
T 1w3b_A          151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA------------R  217 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT------------T
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------------C
Confidence            4444555555555455444444444444444444 34444444555555555444444444444433            3


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       202 ~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                      .++++++.+.+++..+|++..+|.....++...+
T Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  251 (388)
T 1w3b_A          218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence            3444444444444444444444444444443333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.50  E-value=8.5e-14  Score=151.89  Aligned_cols=172  Identities=9%  Similarity=-0.082  Sum_probs=159.1

Q ss_pred             hcCCCCHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         36 KNQEYDDEALSLTSEVL--------RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        36 ~~~~~~~eal~~~~~~l--------~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      ..|++ ++|++.+++++        ..+|++..+|..++.++...+.          +++++..++++++.+|++..+|+
T Consensus       403 ~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~  471 (681)
T 2pzi_A          403 VLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD----------VAKATRKLDDLAERVGWRWRLVW  471 (681)
T ss_dssp             TTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCcchHHHHH
Confidence            34444 88999999999        9999999999999999999998          79999999999999999999999


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL  187 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~  187 (522)
                      +++.++...   ++++++++.++++++.+|.+..+|..++.+....+. +++ +++++++++.+|.+..+|.+++.++..
T Consensus       472 ~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          472 YRAVAELLT---GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            999999999   999999999999999999999999999999999998 577 999999999999999999999999998


Q ss_pred             hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                      +            +.++++++.+++|+..+|++..+|..+..++-..+
T Consensus       547 ~------------g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          547 E------------GDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             T------------TCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             c------------CCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            8            88999999999999999999999988888875543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=1.7e-13  Score=138.47  Aligned_cols=181  Identities=10%  Similarity=0.018  Sum_probs=162.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHH
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCY  111 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~  111 (522)
                      ......|.+ ++|++.+.+++.++|++.++|...+.++...+.          +++++..++.++..+|.+..+|...+.
T Consensus       109 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~  177 (388)
T 1w3b_A          109 AALVAAGDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR----------LEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             HHHHHHSCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344555666 778999999999999999999999999999888          799999999999999999999999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        112 VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       112 il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      ++...   +++++++..++++++.+|.+..+|...+.+....+. ++++++.+.++++.+|.+..+|...+.+....   
T Consensus       178 ~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---  250 (388)
T 1w3b_A          178 VFNAQ---GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ---  250 (388)
T ss_dssp             HHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred             HHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc---
Confidence            99888   889999999999999999999999999999999888 68999999999999999999999999888877   


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                               +.++++++.+.+++..+|++..+|..+..++...++...
T Consensus       251 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  289 (388)
T 1w3b_A          251 ---------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             ---------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred             ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                     788999999999999999999999888888877776554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.50  E-value=3.8e-14  Score=131.79  Aligned_cols=170  Identities=10%  Similarity=-0.042  Sum_probs=154.1

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      |.+..+|..++.++...+.          +++++..++.+++.+|++..+|..++.++...   +++++++..++++++.
T Consensus         2 p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGR----------YDAALTLFERALKENPQDPEALYWLARTQLKL---GLVNPALENGKTLVAR   68 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Confidence            7888999999999999988          79999999999999999999999999999999   9999999999999999


Q ss_pred             cCCCcchhhHHHHHHHhc-----------CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHH
Q psy13451        136 DERNFHCWDYRRYVTDRH-----------KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYV  204 (522)
Q Consensus       136 d~kn~~aW~~R~~~l~~~-----------~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~  204 (522)
                      +|.+..+|...+.+....           +. ++++++.++++++.+|.+..+|..++.++...            +.++
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~------------g~~~  135 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRGLVYALL------------GERD  135 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc------------CChH
Confidence            999999999999999998           87 69999999999999999999999999999988            8899


Q ss_pred             HHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451        205 NEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       205 ~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                      ++++.+++++..+ ++..+|..++.++...++...           ++..|.+++.++|
T Consensus       136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~-----------A~~~~~~al~~~P  182 (217)
T 2pl2_A          136 KAEASLKQALALE-DTPEIRSALAELYLSMGRLDE-----------ALAQYAKALEQAP  182 (217)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCC
Confidence            9999999999999 999999999999888887665           3444566655544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=1.3e-13  Score=116.44  Aligned_cols=123  Identities=11%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHH
Q psy13451         49 SEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELEL  128 (522)
Q Consensus        49 ~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~  128 (522)
                      .++..+||+...+|+.||..+...+.          +++++..++++|+.+|++..+|..++.++..+   +++++++..
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~   69 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKGD----------YPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDD   69 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh---ccHHHHHHH
Confidence            45667999999999999999999988          89999999999999999999999999999999   999999999


Q ss_pred             HHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        129 CNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       129 ~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      +++++++||++..+|..++.+...++. +++++++++++++.+|.|..|+...+.++
T Consensus        70 ~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           70 CDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999998 79999999999999999999987766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=1.6e-13  Score=146.54  Aligned_cols=138  Identities=25%  Similarity=0.296  Sum_probs=68.0

Q ss_pred             EEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451        369 ITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP  445 (522)
Q Consensus       369 ~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l  445 (522)
                      .+++++|+++.+|. +  .++++.|++++|.+++..|..|..+++|++|++++|.++.++  .|..+++|++|++++|.+
T Consensus        35 ~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             EEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence            45555555555554 2  245555555555555444445555555555555555555542  245555555555555555


Q ss_pred             Cccc---cCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCC
Q psy13451        446 NIIL---CVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV  509 (522)
Q Consensus       446 ~~~~---~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  509 (522)
                      +.++   +++|+.|++++|.++.++  . ++.+++|+.|++++|.++......+..+ +|+.|++++|.+
T Consensus       113 ~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             CEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred             CccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence            5444   244555555555555433  1 4555555555555555544322222222 225555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=152.13  Aligned_cols=170  Identities=17%  Similarity=0.208  Sum_probs=120.8

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV  411 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  411 (522)
                      ++|+.|+++++......+..+..   ++.+    +.|++++|.++.+++  +..+++|+.|+|++|.+++..|..|..++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFET---LKDL----KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSS---CCCC----CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             CCccEEECCCCcccccChhhhhc---CCCC----CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence            67888888877655432222111   1112    689999999998754  88899999999999999977788999999


Q ss_pred             CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-cCcccEEEcCCCCCCCCCC--------------------
Q psy13451        412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-CVYFQSLKLTHCSLSSLHV--------------------  468 (522)
Q Consensus       412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-~~~L~~L~Ls~n~l~~~~~--------------------  468 (522)
                      +|+.|++++|.++.++  .|..+++|+.|++++|.++.++ .++|+.|++++|.++.++.                    
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence            9999999999998876  4888999999999999988765 4667777777776665543                    


Q ss_pred             ---CCCCCCCCEEEccCCCCCCCCh-hhhcCCCCccEEEecCCCCc
Q psy13451        469 ---FPHLPSLESLDVSHNAIDHIED-SVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       469 ---l~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~  510 (522)
                         +..+++|+.|+|++|.++..+. ..+..+++|+.|+|++|.++
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence               2245556666666666555432 23344556666666666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.48  E-value=8.8e-14  Score=139.30  Aligned_cols=186  Identities=11%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      ++.........|.+ ++|+..+.+++.++|++..+|+..+.++...+.          +++++..+++++..+|++..+|
T Consensus        68 ~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~  136 (365)
T 4eqf_A           68 AFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENEN----------EQAAIVALQRCLELQPNNLKAL  136 (365)
T ss_dssp             HHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCHHHH
Confidence            34444455555655 778888888888888888888888888888777          6788888888888888888888


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH----------HHHHHhcCCCCHHHHHHHHHHHHhcCC--c
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR----------RYVTDRHKVAPLKELNYSTEKIEANFS--N  174 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R----------~~~l~~~~~~~~~el~~~~~~i~~~~~--n  174 (522)
                      ...+.++...   +++++++..++++++.+|.+..+|..+          +.+....+. +++++++++++++.+|.  +
T Consensus       137 ~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~  212 (365)
T 4eqf_A          137 MALAVSYTNT---SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMID  212 (365)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHcc---ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccC
Confidence            8888887777   667777777777777777666666555          334444333 45666666666666666  5


Q ss_pred             chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       175 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      ..+|...+.++...            +.++++++++.+++..+|++..+|..++.++...+++..
T Consensus       213 ~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          213 PDLQTGLGVLFHLS------------GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             HHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            56666666665555            556666666666666666666666666666655555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=3e-13  Score=124.82  Aligned_cols=174  Identities=9%  Similarity=0.003  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHhhccccHHHHHHHHHHHH
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNY----------------RKEVLLHMKATLAEEELHELVDREL   89 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~----------------R~~~l~~l~~~~~~~~~~~~~~~eL   89 (522)
                      .++.+.......|++ ++|+..+.+++.++|++..+|.+                ++.++...+.          +++++
T Consensus         6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~   74 (208)
T 3urz_A            6 EMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN----------YDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred             HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC----------HHHHH
Confidence            456667777788888 88999999999999999999999                9999999888          79999


Q ss_pred             HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy13451         90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-PLKELNYSTEKI  168 (522)
Q Consensus        90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~-~~~el~~~~~~i  168 (522)
                      ..++++++.+|++..+|..++.++...   +++++++..++++++++|.|..+|...+.+....+.. .......+.+.+
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCR---GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999   9999999999999999999999999999988654321 123344555555


Q ss_pred             HhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451        169 EANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ  227 (522)
Q Consensus       169 ~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~  227 (522)
                      ..+| ...+|++++......            +.++++++++++|+..+|+++ +..+.
T Consensus       152 ~~~~-~~~a~~~~g~~~~~~------------~~~~~A~~~~~~al~l~P~~~-~~~~l  196 (208)
T 3urz_A          152 SPTK-MQYARYRDGLSKLFT------------TRYEKARNSLQKVILRFPSTE-AQKTL  196 (208)
T ss_dssp             CCCH-HHHHHHHHHHHHHHH------------HTHHHHHHHHHHHTTTSCCHH-HHHHH
T ss_pred             CCCc-hhHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCHH-HHHHH
Confidence            4333 334788888877776            889999999999999999754 44333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.47  E-value=7.1e-15  Score=149.32  Aligned_cols=179  Identities=16%  Similarity=0.131  Sum_probs=136.6

Q ss_pred             HHHHhcccccccCccCcchhhc----hhhhhhhhcccccCCCCCcEEEecCCCcccc-----cC-cCCC---------Cc
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKD----SESKYKIETFIQTNPRANQITNLSSLQLTSI-----HH-MHCF---------AH  388 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~----l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l-----~~-~~~l---------~~  388 (522)
                      ..+..+++|+.|+++++.+...    ++..+..   ++.+    +.|++++|.++..     +. +..+         ++
T Consensus        88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---~~~L----~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A           88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK---HTPL----EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP  160 (386)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH---CTTC----CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHh---CCCC----CEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence            3457889999999999887663    2222221   2222    5999999999753     22 3333         89


Q ss_pred             ccEEEecCCCCC-Cccc---ccCCCCCCccEEEcCCCCCCC------CC-CCCCCCCcCEEEccCCCCC-----ccc---
Q psy13451        389 CKQVDLSNNPLT-NNCL---RHLTPLVACESLKLTHCSLSS------LH-VFPHLPSLESLDVSHNAPN-----IIL---  449 (522)
Q Consensus       389 L~~L~Ls~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~------~~-~~~~l~~L~~L~ls~N~l~-----~~~---  449 (522)
                      |+.|++++|.++ +.++   ..+..+++|+.|++++|.++.      ++ .+..+++|+.|++++|.++     .++   
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            999999999997 3344   456678899999999999983      34 6788999999999999995     222   


Q ss_pred             --cCcccEEEcCCCCCCCCC-----C-C--CCCCCCCEEEccCCCCCC-----CChhhhcCCCCccEEEecCCCCcccc
Q psy13451        450 --CVYFQSLKLTHCSLSSLH-----V-F--PHLPSLESLDVSHNAIDH-----IEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       450 --~~~L~~L~Ls~n~l~~~~-----~-l--~~~~~L~~L~Ls~N~l~~-----~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                        .++|+.|+|++|.|++.+     . +  +.+++|+.|+|++|.|+.     ++......+++|+.|++++|++++..
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              578999999999998752     1 3  458999999999999998     44433367899999999999999766

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=2.8e-13  Score=141.41  Aligned_cols=185  Identities=15%  Similarity=0.094  Sum_probs=165.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++.++|++.+.+++.++|++..+|+..+.++...+.          +++++..+++++..+|+ ..+|...+
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~lg  177 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD----------VTSAHTCFSGALTHCKN-KVSLQNLS  177 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence            33444557777999999999999999999999999999999988          79999999999999999 68999999


Q ss_pred             HHHHHhc------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC---C
Q psy13451        111 YVLDHIS------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH--------KVAPLKELNYSTEKIEANF---S  173 (522)
Q Consensus       111 ~il~~l~------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~--------~~~~~~el~~~~~~i~~~~---~  173 (522)
                      .++....      ..++++++++.++++++.+|.+..+|...+.++...        +. +++++++++++++.+|   .
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~  256 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASS  256 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCccc
Confidence            8886640      015789999999999999999999999999999887        66 6999999999999999   9


Q ss_pred             cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +..+|.+++.++...            +.++++++++.+|+..+|++..+|..+..++...++...
T Consensus       257 ~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          257 NPDLHLNRATLHKYE------------ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988            889999999999999999999999999998877765443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=1.1e-12  Score=140.56  Aligned_cols=112  Identities=26%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      ++|++++|.|+.+|.  .+++|+.|++++|.++ .+|.   .+++|+.|++++|.++.+|..  +++|+.|++++|.++.
T Consensus        84 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A           84 RTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CEEEECSCCCSCCCC--CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC
T ss_pred             CEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCC
Confidence            466666666666655  4556666666666665 2333   345666666666666665532  3566777777776666


Q ss_pred             cc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC
Q psy13451        448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE  489 (522)
Q Consensus       448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~  489 (522)
                      ++  +++|+.|++++|.|+.++  ..+++|+.|++++|.|++++
T Consensus       156 l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~  197 (622)
T 3g06_A          156 LPALPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLP  197 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCC
T ss_pred             cCCccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCC
Confidence            54  456667777777766665  34577888888888887765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.46  E-value=1.4e-13  Score=137.86  Aligned_cols=194  Identities=10%  Similarity=-0.032  Sum_probs=166.2

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH--
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR--  109 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R--  109 (522)
                      ......|++ ++|+..+.+++.++|++..+|...+.++...+.          +++++..++.+++.+|++..+|..+  
T Consensus       107 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~  175 (365)
T 4eqf_A          107 ITQAENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSH----------QQDACEALKNWIKQNPKYKYLVKNKKG  175 (365)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCHHHHCC------
T ss_pred             HHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHhCccchHHHhhhcc
Confidence            334445655 889999999999999999999999999999988          7999999999999999999999887  


Q ss_pred             --------HHHHHHhcCCCChHHHHHHHHHHHhhcCC--CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        110 --------CYVLDHISRAPNYEKELELCNYYLELDER--NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       110 --------~~il~~l~~~~~~~~el~~~~~~l~~d~k--n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                              +.++...   +++++++.+++++++.+|.  +..+|...+.+....+. +++++++++++++.+|.+..+|.
T Consensus       176 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~  251 (365)
T 4eqf_A          176 SPGLTRRMSKSPVDS---SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE-FNRAIDAFNAALTVRPEDYSLWN  251 (365)
T ss_dssp             -------------CC---HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH
Confidence                    5555555   8899999999999999999  88999999999999988 79999999999999999999999


Q ss_pred             HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccc
Q psy13451        180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLV  259 (522)
Q Consensus       180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (522)
                      ..+.++...            +.++++++++.+++..+|++..+|..++.++...+++..           |...|.+++
T Consensus       252 ~l~~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~al  308 (365)
T 4eqf_A          252 RLGATLANG------------DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE-----------AVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH-----------HHHHHHHHH
T ss_pred             HHHHHHHHc------------CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH-----------HHHHHHHHH
Confidence            999999888            889999999999999999999999999999988887665           444566666


Q ss_pred             cccc
Q psy13451        260 DLTS  263 (522)
Q Consensus       260 ~~~~  263 (522)
                      .+.|
T Consensus       309 ~~~~  312 (365)
T 4eqf_A          309 SLQR  312 (365)
T ss_dssp             HHHH
T ss_pred             HhCc
Confidence            6554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=1.2e-12  Score=128.30  Aligned_cols=193  Identities=8%  Similarity=-0.043  Sum_probs=148.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL  113 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il  113 (522)
                      ....|...++|+..+.+++.++|++..+|...+.++...+.          +++++..++.++..+|++..+|...+.+.
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  169 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE----------HDQAMAAYFTAAQLMKGCHLPMLYIGLEY  169 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            33444344667777777777777777777777777777766          67777888888888888777777777777


Q ss_pred             HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc---------CCcchHhhHHHHH
Q psy13451        114 DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN---------FSNYSAWHYRSKL  184 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~---------~~n~saW~~r~~l  184 (522)
                      ...   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++..         |.+..+|...+.+
T Consensus       170 ~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          170 GLT---NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             HHH---hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence            777   777888888888888888888888888888877776 677888888888876         6666778777777


Q ss_pred             hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451        185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                      ....            +.++++++++.+++..+|++..+|.....++...++...           |...|.+++.++|
T Consensus       246 ~~~~------------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-----------A~~~~~~al~~~p  301 (330)
T 3hym_B          246 CRKL------------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN-----------AVDYFHTALGLRR  301 (330)
T ss_dssp             HHHT------------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHH-----------HHHHHHTTTTTCS
T ss_pred             HHHh------------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHH-----------HHHHHHHHHccCC
Confidence            7766            789999999999999999999999999999988877655           3444566555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=2.1e-13  Score=127.66  Aligned_cols=179  Identities=12%  Similarity=0.091  Sum_probs=129.1

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL  113 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il  113 (522)
                      ....|++ ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|++..+|...+.+.
T Consensus        33 ~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           33 GSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVNE----------LERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3444555 667777777777788777777777777777766          57777777777777777777777777777


Q ss_pred             HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCC
Q psy13451        114 DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPN  193 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~  193 (522)
                      ...   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....     
T Consensus       102 ~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  172 (243)
T 2q7f_A          102 VVK---EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFGMCLANE-----  172 (243)
T ss_dssp             HHT---TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----
T ss_pred             HHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-----
Confidence            777   777777777888877777777777777777777776 57777777777777777777777777777666     


Q ss_pred             CCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        194 NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       194 ~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                             +.++++++++.+++..+|.+..+|..+..+....+....
T Consensus       173 -------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  211 (243)
T 2q7f_A          173 -------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK  211 (243)
T ss_dssp             -------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTH
T ss_pred             -------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHH
Confidence                   566777777777777777777777777777766665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=5.2e-12  Score=118.07  Aligned_cols=174  Identities=12%  Similarity=0.050  Sum_probs=158.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++ ++|+..+.+++.++|++..+|...+.++...+.          +++++..++++++.+|++..+|...+
T Consensus        64 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           64 ANLLSSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKEM----------YKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3334455655 889999999999999999999999999999887          79999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP  190 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~  190 (522)
                      .+....   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....  
T Consensus       133 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--  206 (243)
T 2q7f_A          133 TVLVKL---EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYK--  206 (243)
T ss_dssp             HHHHHT---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHh---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--
Confidence            999998   999999999999999999999999999999999998 79999999999999999999999999999887  


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                                +.++++++++++++..+|++..+|..+..+-
T Consensus       207 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          207 ----------ENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             ----------TCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             ----------cCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence                      7789999999999999999999997665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.43  E-value=4.9e-12  Score=123.87  Aligned_cols=186  Identities=11%  Similarity=-0.010  Sum_probs=170.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +..........|++ ++|+..+++++..+|.+..++.....++...+.          +++++..++.++..+|++..+|
T Consensus        25 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~   93 (330)
T 3hym_B           25 VVSLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK----------ANELFYLSHKLVDLYPSNPVSW   93 (330)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCcCCHHHH
Confidence            34445555666776 889999999999999999999999999998887          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCC-ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        107 FQRCYVLDHISRAP-NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       107 ~~R~~il~~l~~~~-~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      ...+.+....   + ++++++.+++++++.+|++..+|...+.+....+. ++++++.++++++.+|.+..+|.+.+.+.
T Consensus        94 ~~l~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  169 (330)
T 3hym_B           94 FAVGCYYLMV---GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEY  169 (330)
T ss_dssp             HHHHHHHHHS---CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHh---hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999998   7 89999999999999999999999999999999998 79999999999999999999999999988


Q ss_pred             chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      ...            +.++++++++.+++..+|.+..+|.....++...++...
T Consensus       170 ~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  211 (330)
T 3hym_B          170 GLT------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT  211 (330)
T ss_dssp             HHT------------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHH------------hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHH
Confidence            887            789999999999999999999999999999988877654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=1.2e-12  Score=129.57  Aligned_cols=186  Identities=11%  Similarity=-0.003  Sum_probs=166.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      .+.........|++ ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|.+..+|
T Consensus         6 ~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~   74 (359)
T 3ieg_A            6 HLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK----------SKAALPDLTKVIALKMDFTAAR   74 (359)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcchHH
Confidence            44455566677777 889999999999999999999999999999988          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcC---CCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDE---RNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEAN  171 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~---kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~  171 (522)
                      ...+.++...   +++++++..++++++.+|   .+..+|...            +.+....+. +++++++++++++.+
T Consensus        75 ~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~  150 (359)
T 3ieg_A           75 LQRGHLLLKQ---GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-YTAAITFLDKILEVC  150 (359)
T ss_dssp             HHHHHHHHHH---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHc---CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence            9999999999   899999999999999999   999998877            466667776 699999999999999


Q ss_pred             CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        172 FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       172 ~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      |.+..+|..++.+....            +.++++++.+.+++..+|.+..+|.....+....++...
T Consensus       151 ~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          151 VWDAELRELRAECFIKE------------GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             TTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCchHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999888            789999999999999999999999999888877776554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=5.9e-13  Score=125.53  Aligned_cols=185  Identities=10%  Similarity=0.014  Sum_probs=167.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC----
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS----  102 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~----  102 (522)
                      ...........|++ ++|+..+.+++..+ ++..+|..++.++...+.          +++++..++.++..+|++    
T Consensus         8 ~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~   75 (258)
T 3uq3_A            8 EKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE----------YETAISTLNDAVEQGREMRADY   75 (258)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCcccccch
Confidence            33445555667776 88999999999999 999999999999999988          799999999999999987    


Q ss_pred             ---ccchhhHHHHHHHhcCCCChHHHHHHHHHHHh--------------------------hcCCCcchhhHHHHHHHhc
Q psy13451        103 ---YGTWFQRCYVLDHISRAPNYEKELELCNYYLE--------------------------LDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus       103 ---y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~--------------------------~d~kn~~aW~~R~~~l~~~  153 (522)
                         ..+|...+.+....   +++++++..++++++                          .+|.+..+|...+.+....
T Consensus        76 ~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKL---GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence               68999999999988   888999999999998                          7788889999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        154 KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       154 ~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                      +. +++++++++++++.+|.+..+|..++.+....            +.+++++.++++++..+|++..+|.....++..
T Consensus       153 ~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          153 SD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKL------------MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             TC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            88 79999999999999999999999999999887            789999999999999999999999999999988


Q ss_pred             CCCccc
Q psy13451        234 RTSPVQ  239 (522)
Q Consensus       234 ~~~~~~  239 (522)
                      .++...
T Consensus       220 ~g~~~~  225 (258)
T 3uq3_A          220 VKEYAS  225 (258)
T ss_dssp             TTCHHH
T ss_pred             HhhHHH
Confidence            887655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.43  E-value=3.8e-13  Score=113.65  Aligned_cols=122  Identities=12%  Similarity=0.045  Sum_probs=113.0

Q ss_pred             HHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451         94 DCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS  173 (522)
Q Consensus        94 ~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~  173 (522)
                      ++..+||+...+|..||..+.+.   ++++++++.++++++.+|.+..+|..++.+...++. ++++++.++++|+.+|.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKK---GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhh
Confidence            34568999999999999999998   999999999999999999999999999999999998 79999999999999999


Q ss_pred             cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                      +..+|..++.++..+            +.++++++.+++++.++|+|..++.-.+.++
T Consensus        80 ~~~a~~~lg~~~~~~------------~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           80 FIKGYIRKAACLVAM------------REWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999998            8899999999999999999999987766554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=2.7e-13  Score=120.62  Aligned_cols=121  Identities=25%  Similarity=0.291  Sum_probs=104.3

Q ss_pred             cEEEecCCCcc--cccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CCC-CCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLT--SIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LHV-FPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.++  .+|. +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++. +|. +..+++|+.|++++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  104 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG  104 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence            68999999998  6887 68899999999999999854  678889999999999999998 554 34588999999999


Q ss_pred             CCCCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCCCh
Q psy13451        443 NAPNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHIED  490 (522)
Q Consensus       443 N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~~~  490 (522)
                      |.++.++       +++|+.|++++|.++.++.     +..+++|+.|++++|.+..++.
T Consensus       105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            9998754       4688999999999998875     7889999999999999988763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=1.2e-13  Score=139.05  Aligned_cols=141  Identities=18%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             cEEEecCCCcccccC------cCCC-CcccEEEecCCCCCCcccccC----CC-CCCccEEEcCCCCCCCCC------CC
Q psy13451        368 QITNLSSLQLTSIHH------MHCF-AHCKQVDLSNNPLTNNCLRHL----TP-LVACESLKLTHCSLSSLH------VF  429 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~------~~~l-~~L~~L~Ls~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~------~~  429 (522)
                      +.|++++|.++..+.      +..+ ++|+.|++++|.+++..+..+    .. .++|+.|++++|.++...      .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            355555555554321      2222 455555555555553333222    22 135555555555555321      12


Q ss_pred             CCCC-CcCEEEccCCCCCccc----------c-CcccEEEcCCCCCCCCC-----C-CCC-CCCCCEEEccCCCCCCCCh
Q psy13451        430 PHLP-SLESLDVSHNAPNIIL----------C-VYFQSLKLTHCSLSSLH-----V-FPH-LPSLESLDVSHNAIDHIED  490 (522)
Q Consensus       430 ~~l~-~L~~L~ls~N~l~~~~----------~-~~L~~L~Ls~n~l~~~~-----~-l~~-~~~L~~L~Ls~N~l~~~~~  490 (522)
                      ..++ +|+.|++++|.++...          . ++|+.|+|++|.|++.+     . +.. .++|+.|+|++|.|++.+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            2222 5555555555554322          1 35555566655555522     1 222 2355566666665555443


Q ss_pred             ----hhhcCCCCccEEEecCCC
Q psy13451        491 ----SVFAKYEACVQVILTGNP  508 (522)
Q Consensus       491 ----~~l~~l~~L~~L~L~~N~  508 (522)
                          ..+..+++|+.|+|++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence                223444555666665555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.40  E-value=4.2e-12  Score=121.13  Aligned_cols=180  Identities=9%  Similarity=0.030  Sum_probs=160.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT--  105 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~--  105 (522)
                      +.........|.+ ++|+..+.+++..+|++..+|..++.+....+.          +++++..++.++. .|++...  
T Consensus         7 ~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~-~~~~~~~~~   74 (272)
T 3u4t_A            7 FRYADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK----------YDLAQKDIETYFS-KVNATKAKS   74 (272)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC----------HHHHHHHHHHHHT-TSCTTTCCH
T ss_pred             HHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHh-ccCchhHHH
Confidence            3445555666776 889999999999999999999999999999988          7999999999999 6665555  


Q ss_pred             --hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH-
Q psy13451        106 --WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS-  182 (522)
Q Consensus       106 --W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~-  182 (522)
                        |..++.+....   ++++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..++ 
T Consensus        75 ~~~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~  150 (272)
T 3u4t_A           75 ADFEYYGKILMKK---GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence              99999999998   999999999999999999999999999999999998 79999999999999999999999999 


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~  236 (522)
                      .+...             ..++++++.+.+++..+|++..+|.++..+....++
T Consensus       151 ~~~~~-------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          151 AYYYN-------------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHT-------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHH-------------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            54443             378999999999999999999999999888876654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=7.8e-13  Score=132.39  Aligned_cols=167  Identities=15%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccc
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLR  405 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~  405 (522)
                      .++..+++|+.||++++.....++..     .+..+....+.+.+++|+|+.+++  |..+++|+.|++++|.++...+.
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChh-----HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence            34455666666666655544333221     111111111345555566666543  55666666666666666544444


Q ss_pred             cCCCCCCccEEEcCC-CCCCCCC--CCCCCC-CcCEEEccCCCCCccc-----cCcccEEEcCC-CCCCCCCC--CCCCC
Q psy13451        406 HLTPLVACESLKLTH-CSLSSLH--VFPHLP-SLESLDVSHNAPNIIL-----CVYFQSLKLTH-CSLSSLHV--FPHLP  473 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~-~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~-n~l~~~~~--l~~~~  473 (522)
                      .+....++..|++.+ +.+..++  .|..+. .++.|++++|.|+.++     ..+++.|++++ |.++.++.  |..++
T Consensus       123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence            444445555565543 3455543  233332 4566666666666554     23456666653 45666654  56666


Q ss_pred             CCCEEEccCCCCCCCChhhhcCCCCc
Q psy13451        474 SLESLDVSHNAIDHIEDSVFAKYEAC  499 (522)
Q Consensus       474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L  499 (522)
                      +|+.|+|++|.|+.++...+.++++|
T Consensus       203 ~L~~LdLs~N~l~~lp~~~~~~L~~L  228 (350)
T 4ay9_X          203 GPVILDISRTRIHSLPSYGLENLKKL  228 (350)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             ccchhhcCCCCcCccChhhhccchHh
Confidence            66666666666666665444444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=2.5e-12  Score=128.43  Aligned_cols=182  Identities=11%  Similarity=0.061  Sum_probs=126.3

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL  113 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il  113 (522)
                      ....|.+ ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|++..+|...+.++
T Consensus        74 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~  142 (368)
T 1fch_A           74 RLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ----------ELLAISALRRCLELKPDNQTALMALAVSF  142 (368)
T ss_dssp             HHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3334444 556666666666666666666666666666555          45555556666666666555555555555


Q ss_pred             HHhc----------------------------------------------CCCChHHHHHHHHHHHhhcCC--CcchhhH
Q psy13451        114 DHIS----------------------------------------------RAPNYEKELELCNYYLELDER--NFHCWDY  145 (522)
Q Consensus       114 ~~l~----------------------------------------------~~~~~~~el~~~~~~l~~d~k--n~~aW~~  145 (522)
                      ....                                              ..+++++++..++++++.+|.  +..+|..
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            5440                                              003445555666666666666  5666777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451        146 RRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF  225 (522)
Q Consensus       146 R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~  225 (522)
                      .+.+....+. +++++++++++++.+|.+..+|...+.+....            +.++++++++++++..+|.+..+|.
T Consensus       223 l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~  289 (368)
T 1fch_A          223 LGVLFNLSGE-YDKAVDCFTAALSVRPNDYLLWNKLGATLANG------------NQSEEAVAAYRRALELQPGYIRSRY  289 (368)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            7777777777 68888888999999998888888888888877            7788999999999999999988888


Q ss_pred             HHHHHhccCCCccc
Q psy13451        226 YQRWLLGERTSPVQ  239 (522)
Q Consensus       226 y~~~ll~~~~~~~~  239 (522)
                      .+..++...+++..
T Consensus       290 ~l~~~~~~~g~~~~  303 (368)
T 1fch_A          290 NLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHH
Confidence            88888877776554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=3.4e-13  Score=135.06  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=131.1

Q ss_pred             ccccccCccCcchhhchhh-hhhhhcccccCCCCCcEEEecCCCccc-ccC--cCCCCcccE-EEecCCCCCCcccccCC
Q psy13451        334 DLLKTLDPLRLNYYKDSES-KYKIETFIQTNPRANQITNLSSLQLTS-IHH--MHCFAHCKQ-VDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~-~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~--~~~l~~L~~-L~Ls~n~l~~~~~~~~~  408 (522)
                      +++++|+++++.... ++. .+..   +..+    +.|++++|.+.+ +|.  |.+++++.. +.+++|+++...|..|.
T Consensus        30 ~~l~~L~Ls~N~i~~-i~~~~f~~---l~~L----~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~  101 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV-IQKGAFSG---FGDL----EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  101 (350)
T ss_dssp             TTCSEEEEESCCCSE-ECTTSSTT---CTTC----CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred             CCCCEEEccCCcCCC-cCHHHHcC---CCCC----CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence            578899988876543 222 1211   2222    699999999755 665  778888765 67778999977788899


Q ss_pred             CCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccC-CCCCcccc-------CcccEEEcCCCCCCCCCC-CCCCCCCCE
Q psy13451        409 PLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSH-NAPNIILC-------VYFQSLKLTHCSLSSLHV-FPHLPSLES  477 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~-N~l~~~~~-------~~L~~L~Ls~n~l~~~~~-l~~~~~L~~  477 (522)
                      .+++|++|++++|.++.++.  +....++..+++++ +.+..++.       ..++.|++++|.|+.++. .....+|+.
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~  181 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE  181 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence            99999999999999999874  34455677888865 56776652       357889999999999876 445568999


Q ss_pred             EEcc-CCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        478 LDVS-HNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       478 L~Ls-~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      |+++ +|.++.++...|..+++|+.|+|++|+|+..
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  217 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence            9997 5789999988899999999999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.4e-12  Score=114.85  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP  445 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l  445 (522)
                      +.+++++|+++.+|. .-.++|+.|+|++|.+++..|..|..+++|+.|+|++|+|+.++.  |..+++|+.|++++|.+
T Consensus        12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           12 TTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            355555555555554 112455555555555554444445555555555555555554431  33444444444444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.39  E-value=7.6e-12  Score=123.75  Aligned_cols=195  Identities=10%  Similarity=0.054  Sum_probs=167.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|.+ ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|++..+|...+
T Consensus       127 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la  195 (359)
T 3ieg_A          127 ALDAFDGADY-TAAITFLDKILEVCVWDAELRELRAECFIKEGE----------PRKAISDLKAASKLKSDNTEAFYKIS  195 (359)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred             HHHHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4455566666 889999999999999999999999999999988          79999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhcCCcchH-
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEANFSNYSA-  177 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa-  177 (522)
                      .+....   +++++++..++++++.+|.+..+|.+.            +.+....+. ++++++.++++++.+|.+... 
T Consensus       196 ~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~  271 (359)
T 3ieg_A          196 TLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSVAEYT  271 (359)
T ss_dssp             HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHc---CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHH
Confidence            999999   899999999999999999999998755            555666776 799999999999999998754 


Q ss_pred             ---hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEE
Q psy13451        178 ---WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVT  254 (522)
Q Consensus       178 ---W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  254 (522)
                         |...+.+....            +.++++++++++++..+|++..+|..++.++...++...           |...
T Consensus       272 ~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------A~~~  328 (359)
T 3ieg_A          272 VRSKERICHCFSKD------------EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE-----------AIQD  328 (359)
T ss_dssp             HHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-----------HHHH
T ss_pred             HHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH-----------HHHH
Confidence               44566666666            789999999999999999999999999999988887665           3444


Q ss_pred             ecccccccc
Q psy13451        255 FNQLVDLTS  263 (522)
Q Consensus       255 ~~~~~~~~~  263 (522)
                      |.++++++|
T Consensus       329 ~~~a~~~~p  337 (359)
T 3ieg_A          329 YEAAQEHNE  337 (359)
T ss_dssp             HHHHHTTCT
T ss_pred             HHHHHhcCC
Confidence            566655544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.6e-13  Score=139.38  Aligned_cols=144  Identities=15%  Similarity=0.206  Sum_probs=94.9

Q ss_pred             cEEEecCCCccc-----ccC-cCCCCcccEEEecCCCCCCcccccCC----CC---------CCccEEEcCCCCCCC--C
Q psy13451        368 QITNLSSLQLTS-----IHH-MHCFAHCKQVDLSNNPLTNNCLRHLT----PL---------VACESLKLTHCSLSS--L  426 (522)
Q Consensus       368 ~~L~ls~n~l~~-----l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~--~  426 (522)
                      +.|++++|.++.     ++. +..+++|+.|+|++|.+++..+..+.    .+         ++|++|++++|.++.  +
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  176 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  176 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence            577777777776     443 56677777777777777543333332    22         677777777777763  2


Q ss_pred             C----CCCCCCCcCEEEccCCCCCc----------c-ccCcccEEEcCCCCCCC-----CCC-CCCCCCCCEEEccCCCC
Q psy13451        427 H----VFPHLPSLESLDVSHNAPNI----------I-LCVYFQSLKLTHCSLSS-----LHV-FPHLPSLESLDVSHNAI  485 (522)
Q Consensus       427 ~----~~~~l~~L~~L~ls~N~l~~----------~-~~~~L~~L~Ls~n~l~~-----~~~-l~~~~~L~~L~Ls~N~l  485 (522)
                      +    .+..+++|+.|++++|.++.          + .+++|+.|+|++|.+++     ++. +..+++|+.|+|++|.|
T Consensus       177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            2    34566778888888887761          1 14677888888888742     222 66677888888888887


Q ss_pred             CCCC----hhhh--cCCCCccEEEecCCCCcc
Q psy13451        486 DHIE----DSVF--AKYEACVQVILTGNPVSA  511 (522)
Q Consensus       486 ~~~~----~~~l--~~l~~L~~L~L~~N~l~~  511 (522)
                      ++..    +..+  +.+++|+.|+|++|.++.
T Consensus       257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            7652    2344  337788888888888776

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=1.5e-11  Score=115.95  Aligned_cols=188  Identities=11%  Similarity=-0.023  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG  104 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~  104 (522)
                      .............|++ ++|++.+.+++..+|++..+|...+.++...+.          +++++..++.++..+|.+..
T Consensus        38 ~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~  106 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEME----------PKLADEEYRKALASDSRNAR  106 (252)
T ss_dssp             HHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCcCcHH
Confidence            3444555556667777 789999999999999999999999999999887          79999999999999999999


Q ss_pred             chhhHHHHHHHhcCCCChHHHHHHHHHHHh--hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        105 TWFQRCYVLDHISRAPNYEKELELCNYYLE--LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~--~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      +|...+.++...   +++++++++++++++  .+|.+..+|...+.+....+. ++++++++.++++.+|.+..+|...+
T Consensus       107 ~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          107 VLNNYGGFLYEQ---KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHH---hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            999999999998   999999999999999  899999999999999999988 79999999999999999999999999


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      .+....            +.++++++++.+++..+|.+..+|.....+....+....
T Consensus       183 ~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          183 DLLYKE------------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHHHHT------------TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHc------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence            988887            789999999999999999999999888888777766544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.38  E-value=2e-12  Score=132.90  Aligned_cols=187  Identities=11%  Similarity=-0.003  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT  105 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~  105 (522)
                      ............|++ ++|+..+++++..+|++..+|..++.++...+.          +++++..++.+++.+|++..+
T Consensus        28 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           28 KHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK----------SKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCcHHH
Confidence            344445556667777 889999999999999999999999999999988          799999999999999999999


Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc---chhhHH------------HHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNF---HCWDYR------------RYVTDRHKVAPLKELNYSTEKIEA  170 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~---~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~  170 (522)
                      |...+.++...   +++++++..++++++.+|.+.   .+|..-            +.+....+. +++++++++++++.
T Consensus        97 ~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~  172 (450)
T 2y4t_A           97 RLQRGHLLLKQ---GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEV  172 (450)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence            99999999998   899999999999999999988   777644            444666666 68999999999999


Q ss_pred             cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        171 NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       171 ~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +|.+..+|..++.++...            +.++++++.+.+++..+|.+..+|..+..++...++...
T Consensus       173 ~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          173 CVWDAELRELRAECFIKE------------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHT------------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCChHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999988887            778899999999999999999999999888888776554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=9.4e-14  Score=138.02  Aligned_cols=174  Identities=16%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             HhcccccccCccCcchhhc-hhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCC-CCCCc-ccc
Q psy13451        331 KRFDLLKTLDPLRLNYYKD-SESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNN-PLTNN-CLR  405 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~-l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n-~l~~~-~~~  405 (522)
                      ..+++|+.|+++++..... ++..+.   .++.+    +.|++++|.++. .+. +..+++|+.|++++| .+++. ++.
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~---~~~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILS---QCSKL----QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHT---TBCCC----SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHh---hCCCC----CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence            4578888888888765433 332221   12222    588888888775 333 777888888888888 67642 455


Q ss_pred             cCCCCCCccEEEcCCC-CCCC--CC-CCCCCC-CcCEEEccCCC--CC--ccc-----cCcccEEEcCCCC-CCCCC--C
Q psy13451        406 HLTPLVACESLKLTHC-SLSS--LH-VFPHLP-SLESLDVSHNA--PN--IIL-----CVYFQSLKLTHCS-LSSLH--V  468 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~n-~l~~--~~-~~~~l~-~L~~L~ls~N~--l~--~~~-----~~~L~~L~Ls~n~-l~~~~--~  468 (522)
                      .+..+++|+.|++++| .++.  ++ .+..++ +|+.|++++|.  ++  .++     +++|+.|++++|. +++..  .
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            5677888888888888 7775  23 356677 88888888884  43  222     5788888888888 55432  3


Q ss_pred             CCCCCCCCEEEccCCC-CCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        469 FPHLPSLESLDVSHNA-IDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       469 l~~~~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +..+++|+.|++++|. +.......++.+++|+.|++++| ++..
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence            7777888999998884 33333335778888899999888 5543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=2.7e-12  Score=111.84  Aligned_cols=133  Identities=10%  Similarity=-0.023  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+..+.+++..+|++..+|...+.+....+.          +++++..++++++.+|++..+|..++.+....   ++
T Consensus        14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---~~   80 (150)
T 4ga2_A           14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE----------YDLAKKYICTYINVQERDPKAHRFLGLLYELE---EN   80 (150)
T ss_dssp             HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---Cc
Confidence            789999999999999999999999999999988          89999999999999999999999999999999   99


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHH-HHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKEL-NYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el-~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      +++++..++++++++|++..+|...+.++...+.. .++. .+++++++.+|.|..+|..|+.++...
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999884 4555 567999999999999999999887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=1.5e-13  Score=150.60  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=91.8

Q ss_pred             EEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCCCCc
Q psy13451        370 TNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       370 L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~l~~  447 (522)
                      ++++.|.+...+. +..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+.
T Consensus       206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred             ccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence            3444444443344 778889999999999988 67777778899999999999998887 47888899999999999887


Q ss_pred             cc-----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhh
Q psy13451        448 IL-----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVF  493 (522)
Q Consensus       448 ~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l  493 (522)
                      +|     +.+|+.|+|++|.|+.++. ++.+++|+.|+|++|.|++.++..+
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            76     4688999999999988876 8889999999999999987665444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=1.2e-12  Score=114.15  Aligned_cols=136  Identities=14%  Similarity=0.077  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      +++++..+..++..+|++..+|.+.+.+....   ++++++++.++++++++|++..+|...+.+....+. +++++.++
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~   88 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEA---KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-TDKAVECY   88 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-hHHHHHHH
Confidence            68999999999999999999999999999999   999999999999999999999999999999999998 79999999


Q ss_pred             HHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHH-HHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451        165 TEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSM-VESAVFTEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       165 ~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~-~~~ai~~~p~~~s~W~y~~~ll~~~~~  236 (522)
                      .++++.+|.+..+|...+.++...            +.++++.+. +++|+.++|+|..+|..+..++...++
T Consensus        89 ~~al~~~p~~~~~~~~la~~~~~~------------~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           89 RRSVELNPTQKDLVLKIAELLCKN------------DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHH------------CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999887            555666654 689999999999999999888876553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=4.9e-12  Score=113.23  Aligned_cols=103  Identities=23%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~  444 (522)
                      +.+++++|+++.+|. +  .++|+.|+|++|.+++..|..|..+++|+.|+|++|+|+.++.  |..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            467777777777766 3  2677777777777776656667777777777777777776652  4556666666655555


Q ss_pred             CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCC
Q psy13451        445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI  488 (522)
Q Consensus       445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~  488 (522)
                      ++.++..                .+..+++|+.|+|++|.+...
T Consensus        93 l~~l~~~----------------~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRG----------------AFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTT----------------TTTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHH----------------HhccccCCCEEEeCCCCcccc
Confidence            5433211                145556666677776666644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.36  E-value=2.8e-13  Score=136.28  Aligned_cols=187  Identities=22%  Similarity=0.189  Sum_probs=137.9

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCC-----CcccEEEecCCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCF-----AHCKQVDLSNNP  398 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l-----~~L~~L~Ls~n~  398 (522)
                      .+..+...++|+.||++++.........+.  ..+..++..-+.|++++|.++....  +..+     ++|+.|+|++|.
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHH--HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHH--HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            566666667799999999987665442211  1122222111699999999998533  4433     899999999999


Q ss_pred             CCCcccccC----CCC-CCccEEEcCCCCCCCCCC------CCC-CCCcCEEEccCCCCCccc-----------cCcccE
Q psy13451        399 LTNNCLRHL----TPL-VACESLKLTHCSLSSLHV------FPH-LPSLESLDVSHNAPNIIL-----------CVYFQS  455 (522)
Q Consensus       399 l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~------~~~-l~~L~~L~ls~N~l~~~~-----------~~~L~~  455 (522)
                      +++..+..+    ..+ ++|+.|++++|.++..+.      +.. .++|+.|++++|.++...           .++|+.
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            987666543    344 899999999999988652      444 369999999999998422           248999


Q ss_pred             EEcCCCCCCCCCC------CCCC-CCCCEEEccCCCCCCCCh----hhhcC-CCCccEEEecCCCCccccc
Q psy13451        456 LKLTHCSLSSLHV------FPHL-PSLESLDVSHNAIDHIED----SVFAK-YEACVQVILTGNPVSADMV  514 (522)
Q Consensus       456 L~Ls~n~l~~~~~------l~~~-~~L~~L~Ls~N~l~~~~~----~~l~~-l~~L~~L~L~~N~l~~~~~  514 (522)
                      |+|++|.+++.+.      +..+ ++|+.|+|++|.|++...    ..+.. .++|+.|+|++|+++....
T Consensus       172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            9999999988763      3445 599999999999998542    34444 4699999999999987543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.36  E-value=2.6e-13  Score=134.79  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCC-Cccc--ccC-cCCCCcccEEEecCC-CCC
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL-QLTS--IHH-MHCFAHCKQVDLSNN-PLT  400 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n-~l~~--l~~-~~~l~~L~~L~Ls~n-~l~  400 (522)
                      .+..+..+++|+.|++.++.........+..   ++.+    +.|++++| .++.  ++. +..+++|+.|++++| .++
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~---~~~L----~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK---NSNL----VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT---CTTC----SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhc---CCCC----CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            4556777888888888777655444433221   2222    57888888 6774  555 667778888888888 776


Q ss_pred             Cc-ccccCCCCC-CccEEEcCCCC--CCC--CC-CCCCCCCcCEEEccCCC-CCcc------ccCcccEEEcCCCC-CCC
Q psy13451        401 NN-CLRHLTPLV-ACESLKLTHCS--LSS--LH-VFPHLPSLESLDVSHNA-PNII------LCVYFQSLKLTHCS-LSS  465 (522)
Q Consensus       401 ~~-~~~~~~~l~-~L~~L~l~~n~--l~~--~~-~~~~l~~L~~L~ls~N~-l~~~------~~~~L~~L~Ls~n~-l~~  465 (522)
                      +. ++..+..++ +|+.|++++|.  ++.  ++ .+..+++|+.|++++|. ++..      ..++|+.|++++|. ++.
T Consensus       183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence            43 455566777 88888888883  432  33 34567788888888887 4421      14677888888874 333


Q ss_pred             CC--CCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        466 LH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       466 ~~--~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ..  .+..+++|+.|++++| ++......+.  ..+..|++++|.++...
T Consensus       263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIA  309 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred             HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcccc
Confidence            21  2566778888888887 4443322222  12444557777776544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.34  E-value=4.4e-12  Score=124.00  Aligned_cols=180  Identities=13%  Similarity=0.032  Sum_probs=101.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++ ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|++..+|...+
T Consensus        28 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la   96 (327)
T 3cv0_A           28 GLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK----------DGLAIIALNHARMLDPKDIAVHAALA   96 (327)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence            3344444544 556666666666666666666666666666655          46666666666666666666666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH--------------HH-HHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR--------------RY-VTDRHKVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R--------------~~-~l~~~~~~~~~el~~~~~~i~~~~~n~  175 (522)
                      .+....   +++++++..++++++.+|.+..+|...              +- +....+. +++++++++++++.+|.+.
T Consensus        97 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~  172 (327)
T 3cv0_A           97 VSHTNE---HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDA  172 (327)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCH
Confidence            666555   556666666666666666665555444              21 1222222 3455555566666666655


Q ss_pred             hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCc
Q psy13451        176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP  237 (522)
Q Consensus       176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~  237 (522)
                      .+|...+.+....            +.++++++++.+++..+|++..+|.....++...++.
T Consensus       173 ~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          173 QLHASLGVLYNLS------------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             HHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence            5555555555544            4555566666666666665555555555555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.34  E-value=5.8e-11  Score=109.22  Aligned_cols=185  Identities=11%  Similarity=0.034  Sum_probs=159.6

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      ..........|++ ++|+..+.+++..+|++..+|...+.++...+.          +++++..++.++..+|++..+|.
T Consensus        12 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~   80 (225)
T 2vq2_A           12 TQLAMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLKV----------NDKAQESFRQALSIKPDSAEINN   80 (225)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHH
Confidence            3344455566666 889999999999999999999999999999887          79999999999999999999999


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHh--hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLE--LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~--~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      ..+.++...  .+++++++..++++++  .+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+.
T Consensus        81 ~l~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~  157 (225)
T 2vq2_A           81 NYGWFLCGR--LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQPQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHHHHTT--TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            988877543  1789999999999999  777778999999999999988 79999999999999999999999999988


Q ss_pred             chhCCCCCCCCccchhHHHHHHHHHHHHHhcCC-CCcchhhHHHHHhccCCCcc
Q psy13451        186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP-KDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p-~~~s~W~y~~~ll~~~~~~~  238 (522)
                      ...            +.++++++.+++++..+| .+..+|.....+....+...
T Consensus       158 ~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (225)
T 2vq2_A          158 MLA------------GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ  199 (225)
T ss_dssp             HHH------------TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHc------------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence            887            789999999999999999 88888866665555555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.34  E-value=1.4e-12  Score=136.03  Aligned_cols=192  Identities=11%  Similarity=0.038  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHH-HHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELV-DRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP  120 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~-~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~  120 (522)
                      ++++.....++...|+...+|..++.++...+.          + ++++..++++++.+|++..+|+..+.++...   +
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g  151 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD----------YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK---G  151 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSS----------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhccc----------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C
Confidence            567888888899999999999999999999887          7 9999999999999999999999999999999   9


Q ss_pred             ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH---------KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---------~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      ++++++++++++++.+|. ..+|...+.++...         +. +++++++++++++.+|.+..+|+..+.++....-.
T Consensus       152 ~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  229 (474)
T 4abn_A          152 DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN  229 (474)
T ss_dssp             CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 69999999999998         77 68999999999999999999999999988765111


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCC---CCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEP---KDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p---~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                      ..    ...+.++++++++.+|+..+|   .+..+|+.++.++...+++..           |...|.+++.++|
T Consensus       230 ~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~-----------A~~~~~~al~l~p  289 (474)
T 4abn_A          230 TG----QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE-----------ALEGFSQAAALDP  289 (474)
T ss_dssp             TT----CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHCT
T ss_pred             hc----cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCC
Confidence            00    023789999999999999999   999999999999998887765           4445666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=7.5e-13  Score=118.78  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=101.5

Q ss_pred             cEEEecCCCcccccCcCCCC-cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-C-CCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFA-HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-V-FPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~ls~N~  444 (522)
                      +.|++++|.++.+|.+..+. +|+.|++++|.+++.  ..|..+++|+.|++++|.++.++ . +..+++|+.|++++|.
T Consensus        22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   99 (176)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence            68999999999988765555 999999999999854  67889999999999999999886 3 4788999999999999


Q ss_pred             CCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCC
Q psy13451        445 PNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHI  488 (522)
Q Consensus       445 l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~  488 (522)
                      ++.++       +++|+.|++++|.++.++.     +..+++|+.||+++|.+...
T Consensus       100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            87654       4678999999999988876     67889999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.34  E-value=8.8e-12  Score=128.13  Aligned_cols=182  Identities=11%  Similarity=0.042  Sum_probs=155.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|.+ ++|+..+.+++.++|++..+|..++.++...+.          +++++..++.+++.+|++..+|...+
T Consensus       150 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~  218 (450)
T 2y4t_A          150 ALNAFGSGDY-TAAIAFLDKILEVCVWDAELRELRAECFIKEGE----------PRKAISDLKAASKLKNDNTEAFYKIS  218 (450)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------GGGGHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3344555665 789999999999999999999999999999887          58899999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhcCCcc---
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEANFSNY---  175 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~~~n~---  175 (522)
                      .++...   +++++++..++++++.+|.+..+|...            +.+....+. +++++++++++++.+|.+.   
T Consensus       219 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~  294 (450)
T 2y4t_A          219 TLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYT  294 (450)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHc---CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcchHHH
Confidence            999888   889999999999999999998888766            667777777 6899999999999999884   


Q ss_pred             -hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        176 -SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       176 -saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                       .+|..++.++...            +.++++++++++++..+|++..+|..+..++...++...
T Consensus       295 ~~~~~~l~~~~~~~------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  347 (450)
T 2y4t_A          295 VRSKERICHCFSKD------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE  347 (450)
T ss_dssp             HHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence             4677777777776            788999999999999999999999999988888777655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.34  E-value=3.5e-11  Score=120.00  Aligned_cols=191  Identities=10%  Similarity=0.006  Sum_probs=164.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHH--------------------------------
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEE--------------------------------   79 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~--------------------------------   79 (522)
                      ......|.+ ++|+..+.+++.++|++..+|...+.++...+......                                
T Consensus       106 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 1fch_A          106 TTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS  184 (368)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             HHHHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence            334455655 78999999999999999999999999988775521000                                


Q ss_pred             -------HHHHHHHHHHHHHHHHHHhCCC--CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451         80 -------ELHELVDRELKLTKDCLLAQPK--SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT  150 (522)
Q Consensus        80 -------~~~~~~~~eL~~~~~~l~~~pk--~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l  150 (522)
                             -...-+++++..++.++..+|.  ...+|...+.+....   +++++++..++++++.+|.+..+|...+.+.
T Consensus       185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  261 (368)
T 1fch_A          185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWNKLGATL  261 (368)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence                   0112356778888888888888  778888889988888   8999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC----------
Q psy13451        151 DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD----------  220 (522)
Q Consensus       151 ~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~----------  220 (522)
                      ...+. +++++++++++++.+|.+..+|...+.+....            +.++++++++.+++..+|++          
T Consensus       262 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          262 ANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINL------------GAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             HHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            99998 79999999999999999999999999999988            88999999999999999999          


Q ss_pred             -cchhhHHHHHhccCCCccc
Q psy13451        221 -QSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       221 -~s~W~y~~~ll~~~~~~~~  239 (522)
                       ..+|..++.++...++...
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGG
T ss_pred             hhHHHHHHHHHHHHhCChHh
Confidence             7899999999988877655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.3e-11  Score=116.23  Aligned_cols=179  Identities=8%  Similarity=0.050  Sum_probs=151.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhhccccHHHHH-------------------HH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDI-------NSLWNYRKEVLLHMKATLAEEELH-------------------EL   84 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~-------~t~wn~R~~~l~~l~~~~~~~~~~-------------------~~   84 (522)
                      .......|++ ++|+..+.+++.++|++       ..+|...+.++...+..   ++..                   .-
T Consensus        45 ~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~  120 (258)
T 3uq3_A           45 AAAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL---KKTIEYYQKSLTEHRTADILTKLRN  120 (258)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHhcCchhHHHHHHhH
Confidence            3444555665 88999999999999987       79999999999988762   1111                   11


Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      +++++..++.++..+|....+|..++.++...   +++++++..++++++.+|.+..+|...+.+....+. ++++++++
T Consensus       121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~  196 (258)
T 3uq3_A          121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence            23334445555558899999999999999998   999999999999999999999999999999999998 79999999


Q ss_pred             HHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC------CCCcchhhHHHH
Q psy13451        165 TEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE------PKDQSAWFYQRW  229 (522)
Q Consensus       165 ~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~------p~~~s~W~y~~~  229 (522)
                      +++++.+|.+..+|...+.++...            +.++++++++++++..+      |.+..+|.....
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAV------------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            999999999999999999999988            78999999999999999      998888765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=1.4e-11  Score=114.79  Aligned_cols=154  Identities=11%  Similarity=-0.002  Sum_probs=142.2

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC-CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP-KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      |.+..+|..++.++...+.          +++++..++.++..+| ++..+|+.++.+....   +++++++..++++++
T Consensus         4 ~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~   70 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKN----------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI---KKYKEAADYFDIAIK   70 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh---hcHHHHHHHHHHHHH
Confidence            4456899999999999888          7999999999999999 9999999999999999   999999999999999


Q ss_pred             hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc-------hHhhHHHHHhchhCCCCCCCCccchhHHHHHH
Q psy13451        135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY-------SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEF  207 (522)
Q Consensus       135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el  207 (522)
                      .+|.+..+|..++.+....+. ++++++.++++++.+|.|.       .+|..++.+....            +.+++++
T Consensus        71 ~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~------------~~~~~A~  137 (228)
T 4i17_A           71 KNYNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA------------GNIEKAE  137 (228)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT------------TCHHHHH
T ss_pred             hCcchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh------------ccHHHHH
Confidence            999999999999999999998 7999999999999999999       6799999888877            8899999


Q ss_pred             HHHHHHHhcCCC--CcchhhHHHHHhccCC
Q psy13451        208 SMVESAVFTEPK--DQSAWFYQRWLLGERT  235 (522)
Q Consensus       208 ~~~~~ai~~~p~--~~s~W~y~~~ll~~~~  235 (522)
                      +++.+++..+|+  +..+|..++.+....+
T Consensus       138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A          138 ENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            999999999999  8899988888775443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=1.1e-12  Score=114.05  Aligned_cols=113  Identities=25%  Similarity=0.287  Sum_probs=97.2

Q ss_pred             cEEEecCCCcc--cccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CCC-CCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLT--SIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LHV-FPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.++  .+|. +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++. +|. +..+++|+.|++++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~   97 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG   97 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence            68999999998  6777 78899999999999999855  678899999999999999998 554 45688999999999


Q ss_pred             CCCCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccC
Q psy13451        443 NAPNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSH  482 (522)
Q Consensus       443 N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~  482 (522)
                      |.++.++       +++|+.|++++|.+++.++     +..+++|+.|++++
T Consensus        98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9998753       4789999999999998875     77789999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.33  E-value=1.5e-11  Score=131.31  Aligned_cols=180  Identities=9%  Similarity=-0.041  Sum_probs=163.9

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV  112 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i  112 (522)
                      ...+.|.+ ++|++.+++++.++|++..+|+....++...+.          +++++..++.++..+|++..+|...+.+
T Consensus       382 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          382 YYLCVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE----------HDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             HHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34445555 889999999999999999999999999999888          7999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh------cCCc-chHhhHHHHHh
Q psy13451        113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA------NFSN-YSAWHYRSKLL  185 (522)
Q Consensus       113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~------~~~n-~saW~~r~~ll  185 (522)
                      ..+.   ++++++++.++++++.+|++..+|...+.++...+. +++++++++++++.      +|.+ ..+|...+.++
T Consensus       451 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          451 HMQL---GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHH---TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            9999   899999999999999999999999999999999988 79999999999998      6666 58899999998


Q ss_pred             chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      ...            +.++++++.+++++..+|++..+|..+..++...++...
T Consensus       527 ~~~------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  568 (597)
T 2xpi_A          527 RKL------------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL  568 (597)
T ss_dssp             HHT------------TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHh------------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            887            889999999999999999999999999999988887665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=3.3e-11  Score=107.02  Aligned_cols=167  Identities=11%  Similarity=-0.017  Sum_probs=153.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++ ++|+..+.+++..+|++..+|...+.++...+.          +++++..++.+++.+|.+..+|...+
T Consensus        15 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a   83 (186)
T 3as5_A           15 GISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA----------VDRGTELLERSLADAPDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3444555666 889999999999999999999999999999887          79999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP  190 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~  190 (522)
                      .++...   ++++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....  
T Consensus        84 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--  157 (186)
T 3as5_A           84 LTYVQV---QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM--  157 (186)
T ss_dssp             HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHh---cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHc--
Confidence            999999   899999999999999999999999999999999988 79999999999999999999999999988887  


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                                +.++++++++++++..+|++....
T Consensus       158 ----------~~~~~A~~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          158 ----------GRHEEALPHFKKANELDEGASVEL  181 (186)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred             ----------CCHHHHHHHHHHHHHcCCCchhhH
Confidence                      789999999999999999887543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.32  E-value=7.4e-12  Score=122.39  Aligned_cols=181  Identities=9%  Similarity=-0.020  Sum_probs=158.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH--
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR--  109 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R--  109 (522)
                      ......|++ ++|+..+.+++.++|++..+|...+.++...+.          +++++..++.++..+|++..+|...  
T Consensus        63 ~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~  131 (327)
T 3cv0_A           63 LTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHN----------ANAALASLRAWLLSQPQYEQLGSVNLQ  131 (327)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSTTTTTC------
T ss_pred             HHHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence            334455655 889999999999999999999999999999888          7999999999999999999999887  


Q ss_pred             ------------HH-HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451        110 ------------CY-VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS  176 (522)
Q Consensus       110 ------------~~-il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s  176 (522)
                                  +. ++...   +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~  207 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAP---NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN-YDSAAANLRRAVELRPDDAQ  207 (327)
T ss_dssp             --------------CCTTSH---HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCcHH
Confidence                        33 33344   778999999999999999999999999999999988 79999999999999999999


Q ss_pred             HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       177 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +|...+.+....            +.++++++++.+++..+|.+..+|.....+....++...
T Consensus       208 ~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          208 LWNKLGATLANG------------NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            999999999887            789999999999999999999999999999888877655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=1.6e-12  Score=142.45  Aligned_cols=143  Identities=14%  Similarity=0.072  Sum_probs=94.2

Q ss_pred             cEEEecCCCcccccC-cCCCC-----cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEc
Q psy13451        368 QITNLSSLQLTSIHH-MHCFA-----HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDV  440 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l  440 (522)
                      +.|++.+|.+...+. +....     .+..++++.|.+. ..+..|..++.|+.|+|++|.+..++ .+..+++|+.|+|
T Consensus       176 ~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~L  254 (727)
T 4b8c_D          176 PKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYL  254 (727)
T ss_dssp             -----------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBC
T ss_pred             ceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEe
Confidence            456666666666443 11111     2333445556655 56788999999999999999999987 5678999999999


Q ss_pred             cCCCCCccc-----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        441 SHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       441 s~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++|.|+.+|     +++|+.|+|++|.|+.++. ++.+++|+.|+|++|.|+.+|. .|+.+++|+.|+|++|+|++.
T Consensus       255 s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             TTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSH
T ss_pred             eCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCC
Confidence            999999776     4789999999999998876 8899999999999999998875 499999999999999999854

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=3.6e-11  Score=117.83  Aligned_cols=179  Identities=9%  Similarity=-0.007  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-------hccccHHHHHHHHHHHHHHHHHHHH-hCCCCccchhhHHHHH
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHM-------KATLAEEELHELVDRELKLTKDCLL-AQPKSYGTWFQRCYVL  113 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-------~~~~~~~~~~~~~~~eL~~~~~~l~-~~pk~y~~W~~R~~il  113 (522)
                      ++|+..+++++..+|.+..+|..++.++...       +..   +.....+++++..++++++ .+|++..+|...+.++
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM---NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccch---hhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            6899999999999999999999999998754       321   1112224899999999999 7999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHhhcCCCcc-hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch-hCCC
Q psy13451        114 DHISRAPNYEKELELCNYYLELDERNFH-CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL-LYPD  191 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~-aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~-l~~~  191 (522)
                      ...   ++++++.+.++++++.+|.+.. +|...+.+....+. ++++.+.++++++.+|.+..+|.....+-.. .   
T Consensus       110 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~---  182 (308)
T 2ond_A          110 ESR---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---  182 (308)
T ss_dssp             HHT---TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS---
T ss_pred             Hhc---CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---
Confidence            998   8999999999999999999997 99999999988887 6899999999999999999888755544321 2   


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                               +.++++...+++++..+|++..+|....-++...++...
T Consensus       183 ---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  221 (308)
T 2ond_A          183 ---------KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred             ---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence                     578999999999999999999999888888777766554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=4.7e-15  Score=135.98  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=115.2

Q ss_pred             cEEEecCC--CcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC-CCCCCCcCEEEccCC
Q psy13451        368 QITNLSSL--QLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV-FPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n--~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ls~N  443 (522)
                      +...++++  .++.+|. +..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++.+|. +..+++|+.|++++|
T Consensus        26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            34455444  4555665 7889999999999999985 66 78889999999999999998875 455689999999999


Q ss_pred             CCCccc----cCcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCCh----------hhhcCCCCccEEEecC
Q psy13451        444 APNIIL----CVYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIED----------SVFAKYEACVQVILTG  506 (522)
Q Consensus       444 ~l~~~~----~~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~----------~~l~~l~~L~~L~L~~  506 (522)
                      .++.++    +++|+.|++++|.+++++.   +..+++|+.|++++|.+++..+          ..+..+++|+.|+  +
T Consensus       104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~  181 (198)
T 1ds9_A          104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred             cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence            998875    5789999999999998653   7889999999999999876533          2478899999886  7


Q ss_pred             CCCcccc
Q psy13451        507 NPVSADM  513 (522)
Q Consensus       507 N~l~~~~  513 (522)
                      |+++...
T Consensus       182 ~~i~~~e  188 (198)
T 1ds9_A          182 MPVDVDE  188 (198)
T ss_dssp             GGGTTTT
T ss_pred             cccCHHH
Confidence            8876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=1.4e-10  Score=109.14  Aligned_cols=167  Identities=10%  Similarity=-0.060  Sum_probs=153.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH--hCCCCccchhhHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL--AQPKSYGTWFQRCY  111 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pk~y~~W~~R~~  111 (522)
                      ....|++ ++|+..+.+++..+|++..+|...+.++...+.          +++++..++.++.  .+|.+..+|...+.
T Consensus        81 ~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~la~  149 (252)
T 2ho1_A           81 FQTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQKR----------YEEAYQRLLEASQDTLYPERSRVFENLGL  149 (252)
T ss_dssp             HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence            3444555 889999999999999999999999999999887          7999999999999  89999999999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        112 VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       112 il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      ++...   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....   
T Consensus       150 ~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  222 (252)
T 2ho1_A          150 VSLQM---KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVF---  222 (252)
T ss_dssp             HHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHc---CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---
Confidence            99998   899999999999999999999999999999999988 79999999999999999999999988888877   


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ  227 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~  227 (522)
                               +.++++.+++.+++..+|++..++.+.
T Consensus       223 ---------g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          223 ---------EDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             ---------TCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             ---------cCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence                     789999999999999999998887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.28  E-value=4.5e-11  Score=113.88  Aligned_cols=183  Identities=9%  Similarity=0.016  Sum_probs=102.5

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         35 RKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        35 ~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      ...|++ ++|++.+.+++. .|++    ..+|..++.++...+.          +++++..++.++..+|.+..+|...+
T Consensus        48 ~~~~~~-~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~  115 (272)
T 3u4t_A           48 YELAKY-DLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ----------DSLAIQQYQAAVDRDTTRLDMYGQIG  115 (272)
T ss_dssp             HHTTCH-HHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             HHHhhH-HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            334444 555555665555 2222    2235555555555555          45556666666666666666666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHH-HHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRR-YVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY  189 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~-~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~  189 (522)
                      .+....   +++++++..++++++.+|.+..+|...+ .+.... . ++++++.++++++.+|.+..+|..++.+...+.
T Consensus       116 ~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          116 SYFYNK---GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E-YVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             HHHHHT---TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHc---cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            555555   5555666666666666666666665555 333332 2 455555556666666665555555555555543


Q ss_pred             CCC---CCC------------Cc------------------cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        190 PDP---NNH------------LP------------------IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       190 ~~~---~~~------------~~------------------~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                      ...   .+.            .+                  ...+.++++++++++++..+|+|..+|--.+.+....
T Consensus       191 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred             cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence            311   000            00                  0116788999999999999999999998777666544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.27  E-value=1.7e-11  Score=106.92  Aligned_cols=128  Identities=7%  Similarity=-0.018  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +...+......|..       +.+++.++|++..+|..++.++...++          +++++..++.++..+|++..+|
T Consensus        11 ~~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~P~~~~~~   73 (151)
T 3gyz_A           11 ISTAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKGR----------IEEAEVFFRFLCIYDFYNVDYI   73 (151)
T ss_dssp             HHHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHH
Confidence            33444444555544       567788999999999999999999998          8999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~  175 (522)
                      +.++.++..+   +++++++++++++++++|.+..+|.+.+.++..++. +++++++++++++.+|..-
T Consensus        74 ~~lg~~~~~~---g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           74 MGLAAIYQIK---EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHH---ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCHH
Confidence            9999999999   999999999999999999999999999999999998 7999999999999998753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.27  E-value=1.6e-10  Score=106.15  Aligned_cols=169  Identities=9%  Similarity=-0.080  Sum_probs=150.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHH--hCCCCccchhhH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHM-KATLAEEELHELVDRELKLTKDCLL--AQPKSYGTWFQR  109 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~--~~pk~y~~W~~R  109 (522)
                      .....|++ ++|++.+.+++..+|++..+|...+.++... +.          +++++..++.++.  .+|....+|...
T Consensus        51 ~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l  119 (225)
T 2vq2_A           51 IYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR----------PAESMAYFDKALADPTYPTPYIANLNK  119 (225)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred             HHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence            34455555 8899999999999999999999999999998 87          7999999999999  777778999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CcchHhhHHHHHhchh
Q psy13451        110 CYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF-SNYSAWHYRSKLLPLL  188 (522)
Q Consensus       110 ~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~-~n~saW~~r~~ll~~l  188 (522)
                      +.+....   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+| .+..+|.....+....
T Consensus       120 ~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (225)
T 2vq2_A          120 GICSAKQ---GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL  195 (225)
T ss_dssp             HHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHc---CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999998   999999999999999999999999999999999988 7999999999999999 8888887666666655


Q ss_pred             CCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451        189 YPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQR  228 (522)
Q Consensus       189 ~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~  228 (522)
                                  +..+++..++..+...+|++..++.+..
T Consensus       196 ------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~  223 (225)
T 2vq2_A          196 ------------GNAQAAYEYEAQLQANFPYSEELQTVLT  223 (225)
T ss_dssp             ------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             ------------CcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence                        6788899999999999999998887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.27  E-value=1.3e-10  Score=123.96  Aligned_cols=173  Identities=8%  Similarity=-0.037  Sum_probs=158.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV  112 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i  112 (522)
                      .....|.+ ++|++.+++++..+|++..+|+..+.++...+.          +++++..++.++..+|++..+|...+.+
T Consensus       416 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~  484 (597)
T 2xpi_A          416 SFAIEGEH-DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN----------ILLANEYLQSSYALFQYDPLLLNELGVV  484 (597)
T ss_dssp             HHHHHTCH-HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            33444555 889999999999999999999999999999888          7999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhh------cCCC-cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        113 LDHISRAPNYEKELELCNYYLEL------DERN-FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       113 l~~l~~~~~~~~el~~~~~~l~~------d~kn-~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      +.+.   +++++++++++++++.      +|.+ ..+|...+.+....+. ++++++.++++++.+|.+..+|...+.++
T Consensus       485 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          485 AFNK---SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHT---TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHh---CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9998   9999999999999998      6666 5799999999999998 79999999999999999999999999999


Q ss_pred             chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451        186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG  232 (522)
Q Consensus       186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~  232 (522)
                      ...            +.++++.+++++++..+|+|..+|..+..++.
T Consensus       561 ~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          561 LHK------------KIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHh------------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            888            88999999999999999999999988777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.27  E-value=3.1e-11  Score=109.88  Aligned_cols=103  Identities=22%  Similarity=0.287  Sum_probs=87.3

Q ss_pred             cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~  444 (522)
                      +.|++++|.|+.+|. +..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.|+.++  .|..+++|+.|++++|.
T Consensus        34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            799999999999987 899999999999999999877788999999999999999999986  48888999999998888


Q ss_pred             CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCC
Q psy13451        445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID  486 (522)
Q Consensus       445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~  486 (522)
                      ++.++..                .+..+++|+.|+|++|.+.
T Consensus       114 l~~~~~~----------------~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          114 ISVVPEG----------------AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTT----------------TTTTCTTCCEEECCSSCEE
T ss_pred             CCeeChh----------------hhhcCccccEEEeCCCCee
Confidence            8765432                1455667777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.26  E-value=7.9e-13  Score=137.28  Aligned_cols=146  Identities=15%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             cEEEecCCCcccc------cC-cCCCCcccEEEecCCCCCCc----ccccCCCCCCccEEEcCCCCCCCCC------C-C
Q psy13451        368 QITNLSSLQLTSI------HH-MHCFAHCKQVDLSNNPLTNN----CLRHLTPLVACESLKLTHCSLSSLH------V-F  429 (522)
Q Consensus       368 ~~L~ls~n~l~~l------~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~------~-~  429 (522)
                      +.|++++|.++..      +. +..+++|+.|++++|.+++.    ++..+..+++|+.|++++|.++...      . .
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  309 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  309 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence            4566666655542      11 22456666666666666532    3444555666666666666665321      1 1


Q ss_pred             CCCCCcCEEEccCCCCCccc----------cCcccEEEcCCCCCCCCCC------CC-CCCCCCEEEccCCCCCC----C
Q psy13451        430 PHLPSLESLDVSHNAPNIIL----------CVYFQSLKLTHCSLSSLHV------FP-HLPSLESLDVSHNAIDH----I  488 (522)
Q Consensus       430 ~~l~~L~~L~ls~N~l~~~~----------~~~L~~L~Ls~n~l~~~~~------l~-~~~~L~~L~Ls~N~l~~----~  488 (522)
                      ...++|+.|++++|.++...          .++|+.|++++|.+++.+.      +. ..++|+.|+|++|.+++    .
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  389 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  389 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence            22356777777777766431          3677888888887766432      11 25688888888888885    2


Q ss_pred             ChhhhcCCCCccEEEecCCCCcccc
Q psy13451        489 EDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       489 ~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .+..+..+++|+.|++++|+++...
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHHHHhCCCccEEECCCCCCCHHH
Confidence            2456677888888899888887653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=2.8e-11  Score=125.29  Aligned_cols=186  Identities=12%  Similarity=-0.026  Sum_probs=151.7

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC---
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRN---------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP---  100 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~---------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p---  100 (522)
                      .....|.+ ++|++.+.+++.+         +|....+|+.++.+...++.          +++++..+++++.++|   
T Consensus        60 ~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----------~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           60 LKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----------LSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhHhcc
Confidence            34556776 8999999999987         78888999999999999998          7888888888888643   


Q ss_pred             -----CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh---cCCCCHHHHHHHHHHHHhcC
Q psy13451        101 -----KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR---HKVAPLKELNYSTEKIEANF  172 (522)
Q Consensus       101 -----k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~---~~~~~~~el~~~~~~i~~~~  172 (522)
                           ....++..++|.+..+ ..+.+++++++++++++++|+|..+|...+.+...   .+. .+++++.+.++++.+|
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHHHCS
T ss_pred             cccchhhHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhcCC
Confidence                 4456788899998888 66779999999999999999999999888877543   444 4788999999999999


Q ss_pred             CcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        173 SNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       173 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      .+..+|...+..+..+...        .+.++++..++.+++..+|.+..+|..++.++...+....
T Consensus       207 ~~~~~~~~l~~~~~~~~~~--------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREE--------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHH
Confidence            9999999988877766432        2567889999999999999999999999888888777654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.26  E-value=1.1e-10  Score=114.29  Aligned_cols=171  Identities=9%  Similarity=-0.039  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-chhhHHHHHHHhcCC
Q psy13451         42 DEALSLTSEVLR-NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-TWFQRCYVLDHISRA  119 (522)
Q Consensus        42 ~eal~~~~~~l~-~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-~W~~R~~il~~l~~~  119 (522)
                      ++|...+++++. ++|++..+|...+.++...+.          ++++...++++++.+|+++. +|...+.++.+.   
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---  147 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---  147 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHh---
Confidence            899999999999 799999999999999999887          79999999999999999997 999999999888   


Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCcc
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDR-HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI  198 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~-~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~  198 (522)
                      +++++++..++++++.+|.++++|...+.+-.. .+. ++++.+.++++++.+|.+..+|...+.++...          
T Consensus       148 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----------  216 (308)
T 2ond_A          148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----------  216 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------
Confidence            889999999999999999999998766555432 455 68999999999999999999999998888776          


Q ss_pred             chhHHHHHHHHHHHHHhc---CCC-CcchhhHHHHHhccCCCcc
Q psy13451        199 EQDKYVNEFSMVESAVFT---EPK-DQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       199 ~~~~~~~el~~~~~ai~~---~p~-~~s~W~y~~~ll~~~~~~~  238 (522)
                        +.++++...+++++..   +|+ ...+|.-...+....+...
T Consensus       217 --g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~  258 (308)
T 2ond_A          217 --NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             --CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             --CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence              6889999999999996   564 6678877666665555433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.25  E-value=4.1e-13  Score=139.39  Aligned_cols=126  Identities=15%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             CcccEEEecCCCCCCc----ccccCCCCCCccEEEcCCCCCCCC------CC-CCCCCCcCEEEccCCCCCc-----cc-
Q psy13451        387 AHCKQVDLSNNPLTNN----CLRHLTPLVACESLKLTHCSLSSL------HV-FPHLPSLESLDVSHNAPNI-----IL-  449 (522)
Q Consensus       387 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~ls~N~l~~-----~~-  449 (522)
                      ++|+.|++++|.+++.    ++..+..+++|+.|++++|.++..      +. +..+++|+.|++++|.++.     ++ 
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3555555555555532    233444555666666666655542      11 2245566666666666654     22 


Q ss_pred             ----cCcccEEEcCCCCCCCCCC-------CCCCCCCCEEEccCCCCCCCC----hhhhcCCCCccEEEecCCCCccc
Q psy13451        450 ----CVYFQSLKLTHCSLSSLHV-------FPHLPSLESLDVSHNAIDHIE----DSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       450 ----~~~L~~L~Ls~n~l~~~~~-------l~~~~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                          +++|+.|++++|.+++.+.       ....++|+.|++++|.++...    +..+..+++|+.|++++|.++..
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence                3566666776666654321       122356777777777766543    23455667777777777777644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.25  E-value=3.1e-10  Score=108.00  Aligned_cols=185  Identities=10%  Similarity=0.002  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS  102 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~  102 (522)
                      ..+.........|++ ++|+..+.+++..+|++   ..+|..++.++...+.          +++++..++.+++.+|++
T Consensus        17 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           17 EAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE----------YLLAASEYERFIQIYQID   85 (261)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHCCCC
Confidence            455666677788888 88999999999999999   8999999999999988          799999999999998865


Q ss_pred             ---ccchhhHHHHHHHhc-----CCCChHHHHHHHHHHHhhcCCCcchh-----------------hHHHHHHHhcCCCC
Q psy13451        103 ---YGTWFQRCYVLDHIS-----RAPNYEKELELCNYYLELDERNFHCW-----------------DYRRYVTDRHKVAP  157 (522)
Q Consensus       103 ---y~~W~~R~~il~~l~-----~~~~~~~el~~~~~~l~~d~kn~~aW-----------------~~R~~~l~~~~~~~  157 (522)
                         ..+|+.++.+.....     ..+++++++..++++++.+|.+..++                 ...+.+....+. +
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~  164 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL-Y  164 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-H
Confidence               568999999998810     12889999999999999999999988                 777999999888 7


Q ss_pred             HHHHHHHHHHHHhcCCc---chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        158 LKELNYSTEKIEANFSN---YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       158 ~~el~~~~~~i~~~~~n---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                      ++++..++++++.+|.+   ..+|...+.+...+.....  .....+.+++++..+++++..+|++..+.
T Consensus       165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--RARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch--hhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            99999999999999984   4588888888876522110  00123789999999999999999996544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=3.7e-11  Score=109.26  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~  442 (522)
                      +.|++++|.++.++.   +..+++|+.|+|++|.+++..|..|..+++|+.|++++|.|+.++  .|..+++|+.|++++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            799999999999864   789999999999999999888999999999999999999999975  388899999999999


Q ss_pred             CCCCcccc------CcccEEEcCCCCCC
Q psy13451        443 NAPNIILC------VYFQSLKLTHCSLS  464 (522)
Q Consensus       443 N~l~~~~~------~~L~~L~Ls~n~l~  464 (522)
                      |.++++.+      ++|+.|++++|.++
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          112 NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            98876532      34445555555444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=2.2e-11  Score=127.16  Aligned_cols=202  Identities=11%  Similarity=0.022  Sum_probs=147.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc------------cH---HH---H------HHHHHHH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL------------AE---EE---L------HELVDRE   88 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~------------~~---~~---~------~~~~~~e   88 (522)
                      .....|++ ++|+..+.+++..+|+ ..+|..++.++...+...            .+   +-   .      ..-++++
T Consensus       246 ~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  323 (514)
T 2gw1_A          246 FKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA  323 (514)
T ss_dssp             HHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            33444444 5556666666666666 566666555555543310            00   00   0      0014677


Q ss_pred             HHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy13451         89 LKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKI  168 (522)
Q Consensus        89 L~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i  168 (522)
                      +..++.++..+|++..+|...+.++...   +++++++..++++++.+|.+..+|...+.+....+. ++++++++++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~  399 (514)
T 2gw1_A          324 GKDFDKAKELDPENIFPYIQLACLAYRE---NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAI  399 (514)
T ss_dssp             HHHHHHHHHTCSSCSHHHHHHHHHTTTT---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence            8888888888888888888888777776   788888888888888888888888888888888887 688888888888


Q ss_pred             HhcCCcch------HhhHHHHHhch---hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        169 EANFSNYS------AWHYRSKLLPL---LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       169 ~~~~~n~s------aW~~r~~ll~~---l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +.+|.+..      +|..++.+...   .            +.++++++.+.+++..+|++..+|..+..++...++...
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTV------------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCT------------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhc------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence            88888865      88888888776   6            889999999999999999999999999999888877655


Q ss_pred             ceecccCCCceEEEEecccccccc
Q psy13451        240 IISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                                 +...|.+++++.|
T Consensus       468 -----------A~~~~~~a~~~~~  480 (514)
T 2gw1_A          468 -----------AITLFEESADLAR  480 (514)
T ss_dssp             -----------HHHHHHHHHHHCS
T ss_pred             -----------HHHHHHHHHHhcc
Confidence                       3344555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.7e-11  Score=106.76  Aligned_cols=107  Identities=24%  Similarity=0.332  Sum_probs=91.7

Q ss_pred             ccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCC
Q psy13451        389 CKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL  466 (522)
Q Consensus       389 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~  466 (522)
                      -+.+++++|.++ .+|..+.  ++|+.|++++|.|+.++  .|..+++|+.|+|++|+++.++..               
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---------------   75 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG---------------   75 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh---------------
Confidence            478999999997 7787664  89999999999999984  478888888888888877654322               


Q ss_pred             CCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       467 ~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                       .|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.
T Consensus        76 -~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           76 -VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             -HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence             15678899999999999999999999999999999999999999884

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=4.8e-11  Score=106.25  Aligned_cols=108  Identities=23%  Similarity=0.361  Sum_probs=88.5

Q ss_pred             cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCC
Q psy13451        388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS  465 (522)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~  465 (522)
                      ..+.+++++|.++ .+|..+.  ++|+.|++++|.|+.++  .|..+++|+.|++++|+++.++..              
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------------   72 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG--------------   72 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh--------------
Confidence            5678999999998 6776664  88999999999999984  488899999988888887655422              


Q ss_pred             CCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        466 LHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       466 ~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                        .|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.
T Consensus        73 --~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           73 --VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             --hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence              15667888888888888888888888888888888888888888874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=9e-11  Score=125.18  Aligned_cols=163  Identities=9%  Similarity=-0.124  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|++.+.+++.++|++..+|...+.++...+.          +++++..++++++.+|++..+|...+.++...   ++
T Consensus         6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~   72 (568)
T 2vsy_A            6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGD----------TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ---QR   72 (568)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CC
Confidence            789999999999999999999999999999988          79999999999999999999999999999998   99


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      ++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+.......         +
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---------g  142 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW---------R  142 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------T
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc---------c
Confidence            9999999999999999999999999999999998 79999999999999999999999999888776322         5


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451        202 KYVNEFSMVESAVFTEPKDQSAWFYQ  227 (522)
Q Consensus       202 ~~~~el~~~~~ai~~~p~~~s~W~y~  227 (522)
                      .++++++.+.+++..+|.+.++|...
T Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             THHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             cHHHHHHHHHHHHhcCCcccChHHHh
Confidence            78999999999999999998888543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.25  E-value=5.4e-11  Score=125.07  Aligned_cols=195  Identities=8%  Similarity=0.008  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+..+.+++..+|++..+|..++.++...+.          +++++..++.++..+|++..+|..++.++...   ++
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~  359 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD----------YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---GK  359 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CC
Confidence            556666666666666666666666666666555          56666666666666666666666666666666   66


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhH------HHHHhchhCCCCCCC
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHY------RSKLLPLLYPDPNNH  195 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~------r~~ll~~l~~~~~~~  195 (522)
                      +++++..++++++.+|.+..+|.+.+.+....+. +++++++++++++.+|.+..+|..      ++.++......  ..
T Consensus       360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~  436 (537)
T 3fp2_A          360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ--DP  436 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc--cc
Confidence            6666666666666666666666666666666665 466666666666666555544332      22222222000  00


Q ss_pred             CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451        196 LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       196 ~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                      .....+.++++++++.+++..+|++..+|..+..++...+++..           |...|.+++++.+
T Consensus       437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~al~~~~  493 (537)
T 3fp2_A          437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE-----------AIELFEDSAILAR  493 (537)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHC-
T ss_pred             hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-----------HHHHHHHHHHhCC
Confidence            01112789999999999999999999999999999988887665           4444666666544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=6.2e-11  Score=129.24  Aligned_cols=165  Identities=9%  Similarity=-0.069  Sum_probs=140.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhh
Q psy13451         29 ETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQ  108 (522)
Q Consensus        29 ~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~  108 (522)
                      .........|++ ++|++.+++++.++|++..+|+.++.++...+.          +++++..++++++.+|+++.+|..
T Consensus       438 ~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          438 MEVRALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTGD----------YDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             HHHHHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             HHHHHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHH
Confidence            344455566776 889999999999999999999999999999988          799999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        109 RCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       109 R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      ++.++...   +++++ ++.|+++++.+|.+..+|.+++.++...+. ++++++.++++++.+|.+..||..++.++...
T Consensus       507 lg~~~~~~---g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~  581 (681)
T 2pzi_A          507 LAATAELA---GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG  581 (681)
T ss_dssp             HHHHHHHH---TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred             HHHHHHHc---CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence            99999999   88889 999999999999999999999999999998 79999999999999999999999999987553


Q ss_pred             CCCCCCCCccchhHHHHHHHHHHHH
Q psy13451        189 YPDPNNHLPIEQDKYVNEFSMVESA  213 (522)
Q Consensus       189 ~~~~~~~~~~~~~~~~~el~~~~~a  213 (522)
                      ...    .....+.+.+++..+..+
T Consensus       582 ~~~----~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          582 RST----SEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             ---------CCHHHHHHHHHHHHTS
T ss_pred             CCC----CCCCHHHHHHHHHHHhhC
Confidence            210    011234566666555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=5.7e-14  Score=128.71  Aligned_cols=95  Identities=18%  Similarity=0.101  Sum_probs=45.7

Q ss_pred             EEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCcc
Q psy13451        369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII  448 (522)
Q Consensus       369 ~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~  448 (522)
                      .|++++|.++.+|.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++.++++..+++|+.|++++|.++.+
T Consensus        52 ~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A           52 HLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCH
T ss_pred             EEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCch
Confidence            45555555555444444455555555555554 33433334445555555555555444444444555555555554432


Q ss_pred             c-------cCcccEEEcCCCCCC
Q psy13451        449 L-------CVYFQSLKLTHCSLS  464 (522)
Q Consensus       449 ~-------~~~L~~L~Ls~n~l~  464 (522)
                      +       +++|+.|++++|.++
T Consensus       131 ~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          131 GEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSCHHH
T ss_pred             hHHHHHhcCCCCCEEEecCCccc
Confidence            2       244455555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.23  E-value=1.1e-11  Score=108.09  Aligned_cols=118  Identities=8%  Similarity=-0.039  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451         88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEK  167 (522)
Q Consensus        88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~  167 (522)
                      +-..+..++..+|++..+|+.++.++.+.   +++++++..++++++.+|.|..+|...+.++...+. +++++++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~a   96 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNK---GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-FQQAADLYAVA   96 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-HHHHHHHHHHH
Confidence            33556778889999999999999999998   999999999999999999999999999999999998 79999999999


Q ss_pred             HHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        168 IEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       168 i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                      ++.+|.|..+|++++.++..+            +++++++.++++++..+|+..
T Consensus        97 l~l~P~~~~~~~~lg~~~~~l------------g~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRL------------KAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999998            899999999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.22  E-value=3e-10  Score=108.14  Aligned_cols=167  Identities=11%  Similarity=-0.010  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc
Q psy13451         42 DEALSLTSEVLRN----IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS  117 (522)
Q Consensus        42 ~eal~~~~~~l~~----np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~  117 (522)
                      ++|+..+.+++..    +|.+..+|..++.+....+.          +++++..++.++..+|++..+|...+.+.... 
T Consensus        22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-   90 (275)
T 1xnf_A           22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGL----------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA-   90 (275)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-
Confidence            7789999999987    46788999999999999988          79999999999999999999999999999998 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451        118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP  197 (522)
Q Consensus       118 ~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~  197 (522)
                        +++++++.+++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+....... ...         
T Consensus        91 --~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~---------  157 (275)
T 1xnf_A           91 --GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK---------  157 (275)
T ss_dssp             --TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred             --cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence              999999999999999999999999999999999998 7999999999999999998666555433 222         


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        198 IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       198 ~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                         +.+++++..+.+++..+|.+...|......+....
T Consensus       158 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (275)
T 1xnf_A          158 ---LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS  192 (275)
T ss_dssp             ---HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred             ---cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC
Confidence               78999999999999999999888876555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.21  E-value=1.5e-10  Score=103.59  Aligned_cols=106  Identities=24%  Similarity=0.235  Sum_probs=88.9

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N  443 (522)
                      +.|++++|.+++++.  +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++.  +..+++|+.|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            799999999999876  7889999999999999996666678999999999999999999863  678888888888888


Q ss_pred             CCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC
Q psy13451        444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE  489 (522)
Q Consensus       444 ~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~  489 (522)
                      .++.++..                .+..+++|+.|+|++|.+....
T Consensus       111 ~l~~~~~~----------------~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          111 QLKSVPDG----------------IFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSCCCTT----------------TTTTCTTCCEEECCSSCBCCCH
T ss_pred             cceEeCHH----------------HhcCCcccCEEEecCCCeeccC
Confidence            77654321                1566788999999999988654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.21  E-value=4.4e-10  Score=109.23  Aligned_cols=171  Identities=7%  Similarity=-0.041  Sum_probs=148.6

Q ss_pred             cCCCCHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHH
Q psy13451         37 NQEYDDEALSLTSEVLRN--IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD  114 (522)
Q Consensus        37 ~~~~~~eal~~~~~~l~~--np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~  114 (522)
                      ....-++|++.+++++..  +|++.++|...+.++...++          +++++..++.     |.+..+|..++.++.
T Consensus        77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~----------~~~Al~~l~~-----~~~~~~~~~l~~~~~  141 (291)
T 3mkr_A           77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN----------PDAALRTLHQ-----GDSLECMAMTVQILL  141 (291)
T ss_dssp             CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC----------HHHHHHHHTT-----CCSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence            344458899999999986  69999999999999999988          7899998887     999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHH--hcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCC
Q psy13451        115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTD--RHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDP  192 (522)
Q Consensus       115 ~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~--~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~  192 (522)
                      ++   ++++++++.++++++.+|.+.......+|+-.  ..++ +++++..++++++.+|.+..+|+.++.++..+    
T Consensus       142 ~~---g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~-~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~----  213 (291)
T 3mkr_A          142 KL---DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ----  213 (291)
T ss_dssp             HT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT----
T ss_pred             HC---CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Confidence            99   89999999999999999997644444444432  2244 68999999999999999999999999999988    


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcc
Q psy13451        193 NNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       193 ~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~  238 (522)
                              ++++++.+.+.+++..+|+|..+|..+..++...++..
T Consensus       214 --------g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          214 --------GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence                    89999999999999999999999999998888777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.20  E-value=1.4e-11  Score=113.48  Aligned_cols=171  Identities=8%  Similarity=-0.015  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhh----------------HHHHHHHhcCCCC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQ----------------RCYVLDHISRAPN  121 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~----------------R~~il~~l~~~~~  121 (522)
                      ....+..++..+...+.          +++++..++.++..+|++..+|+.                ++.++...   ++
T Consensus         3 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~   69 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQ----------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RN   69 (208)
T ss_dssp             CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TC
T ss_pred             CHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CC
Confidence            34567778888888877          799999999999999999999999                99999998   99


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      +++++..++++++.+|++..+|..++.+....+. +++++++++++++.+|.|..+|..++.++....          ..
T Consensus        70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~----------~~  138 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLGNYYYLTA----------EQ  138 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh----------HH
Confidence            9999999999999999999999999999999998 799999999999999999999999998875541          12


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451        202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST  264 (522)
Q Consensus       202 ~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (522)
                      ........+.+++..+|. ..+|++++......+++..           |+..|.+++.++|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~-----------A~~~~~~al~l~P~  189 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEK-----------ARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHH-----------HHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHH-----------HHHHHHHHHHhCCC
Confidence            344556666666644432 2466666655555555544           55567888877664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.20  E-value=1.4e-09  Score=103.40  Aligned_cols=182  Identities=12%  Similarity=-0.012  Sum_probs=135.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      ...........|++ ++|+..+.+++.++|++..+|...+.++...+.          +++++..++.++..+|++..+|
T Consensus        46 ~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~  114 (275)
T 1xnf_A           46 LYERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN----------FDAAYEAFDSVLELDPTYNYAH  114 (275)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCccccHHH
Confidence            33444555566766 889999999999999999999999999999888          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      ..++.++...   +++++++..++++++.+|.+..+......... .+. +++++.++.+++..+|.+...|......+.
T Consensus       115 ~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (275)
T 1xnf_A          115 LNRGIALYYG---GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-KLD-EKQAKEVLKQHFEKSDKEQWGWNIVEFYLG  189 (275)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHC-HHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred             HHHHHHHHHh---ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            9999999998   89999999999999999998866555544433 344 577888888888887777665543333222


Q ss_pred             hhCCCCC--------CC-----------------CccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        187 LLYPDPN--------NH-----------------LPIEQDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       187 ~l~~~~~--------~~-----------------~~~~~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                      .......        ..                 .....+.++++++++++++..+|++...+
T Consensus       190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  252 (275)
T 1xnf_A          190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  252 (275)
T ss_dssp             SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence            1100000        00                 00011567788888888888888776555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.20  E-value=2.8e-10  Score=118.59  Aligned_cols=171  Identities=10%  Similarity=-0.047  Sum_probs=150.9

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL  113 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il  113 (522)
                      ....|++ ++|+..+.+++.++|++..+|...+.++...+.          +++++..++.++..+|.+..+|..++.++
T Consensus       314 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~  382 (514)
T 2gw1_A          314 NFILQNY-DQAGKDFDKAKELDPENIFPYIQLACLAYRENK----------FDDCETLFSEAKRKFPEAPEVPNFFAEIL  382 (514)
T ss_dssp             HHHTTCT-THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC----------HHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             HHHhCCH-HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            3344444 667777777777777777777777777777666          79999999999999999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451        114 DHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDR---HKVAPLKELNYSTEKIEANFSNYSAWHYRSKL  184 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~---~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l  184 (522)
                      ...   +++++++..++++++.+|.+..      +|...+.+...   .+. +++++++++++++.+|.+..+|...+.+
T Consensus       383 ~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          383 TDK---NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHT---TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHC---CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            999   8999999999999999999966      99999999999   887 7999999999999999999999999999


Q ss_pred             hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                      ....            +.++++++++.+++..+|++..+|....++-
T Consensus       459 ~~~~------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          459 KLQQ------------EDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHT------------TCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHh------------cCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9888            7899999999999999999999998776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.19  E-value=1.5e-10  Score=100.45  Aligned_cols=123  Identities=4%  Similarity=-0.187  Sum_probs=114.2

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHH
Q psy13451         47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKEL  126 (522)
Q Consensus        47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el  126 (522)
                      .+.+++.++|++..+|..++.++...+.          +++++..+..++..+|.+..+|+.++.++...   +++++++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~   75 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGX----------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAM---GQYDLAI   75 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH---hhHHHHH
Confidence            4678899999999999999999999988          79999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHH
Q psy13451        127 ELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSK  183 (522)
Q Consensus       127 ~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~  183 (522)
                      ..+++++.++|.+..+|.+.+.+...++. +++++++++++++.+|.+...+..+..
T Consensus        76 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           76 HSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            99999999999999999999999999998 799999999999999988766554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.18  E-value=4.6e-11  Score=103.66  Aligned_cols=106  Identities=10%  Similarity=0.035  Sum_probs=97.9

Q ss_pred             cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC-------Ccc-----hhhHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q psy13451        104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDER-------NFH-----CWDYRRYVTDRHKVAPLKELNYSTEKIEA-  170 (522)
Q Consensus       104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k-------n~~-----aW~~R~~~l~~~~~~~~~el~~~~~~i~~-  170 (522)
                      ..|..++..+...   +++++++++|+++++.+|.       +..     +|.+|+.++..+++ +++++++++++|+. 
T Consensus        12 ~~~~~~G~~l~~~---g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           12 YLALSDAQRQLVA---GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhh
Confidence            4577888888888   9999999999999999999       443     99999999999998 79999999999999 


Q ss_pred             ------cCCcchHh----hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451        171 ------NFSNYSAW----HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF  225 (522)
Q Consensus       171 ------~~~n~saW----~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~  225 (522)
                            +|.+..||    +.|+.++..+            ++++++++++++++.++|+|..+..
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~l------------gr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGL------------GRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHC------------CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence                  99999999    9999999999            8999999999999999999987653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.17  E-value=4.4e-10  Score=118.01  Aligned_cols=160  Identities=11%  Similarity=0.016  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+..+.+++.++|+ ..+|...+.++...+.          +++++..++.++..+|++..+|..++.++...   ++
T Consensus       260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~  325 (537)
T 3fp2_A          260 LDAQVLLQESINLHPT-PNSYIFLALTLADKEN----------SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL---QD  325 (537)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC----------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CC
Confidence            7899999999999999 8999999998888777          68999999999999999999999999999998   89


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      +++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|.+.+.+....            +
T Consensus       326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g  392 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDR------------G  392 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT------------T
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------------C
Confidence            9999999999999999999999999999999988 79999999999999999999999999998887            7


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451        202 KYVNEFSMVESAVFTEPKDQSAWFYQR  228 (522)
Q Consensus       202 ~~~~el~~~~~ai~~~p~~~s~W~y~~  228 (522)
                      .++++++.+.+++..+|.+..+|....
T Consensus       393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~  419 (537)
T 3fp2_A          393 DFDTAIKQYDIAKRLEEVQEKIHVGIG  419 (537)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred             CHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence            899999999999999999988875443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.16  E-value=6.9e-10  Score=107.83  Aligned_cols=164  Identities=10%  Similarity=-0.064  Sum_probs=141.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV  112 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i  112 (522)
                      .....|.+ ++|+..+.+     |++..+|..++.++..+++          +++++..++.++..+|++..+.....|+
T Consensus       110 ~~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~----------~~~A~~~l~~~~~~~p~~~~~~l~~a~~  173 (291)
T 3mkr_A          110 IYFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDR----------LDLARKELKKMQDQDEDATLTQLATAWV  173 (291)
T ss_dssp             HHHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence            33445555 888998887     9999999999999999998          7999999999999999987555555565


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCC
Q psy13451        113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDP  192 (522)
Q Consensus       113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~  192 (522)
                      -... ..+++++++.+++++++.+|.+..+|+.++.+....++ ++++.+.++++++.+|.|..+|.+++.+....    
T Consensus       174 ~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~----  247 (291)
T 3mkr_A          174 SLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHL----  247 (291)
T ss_dssp             HHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred             HHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Confidence            5444 45789999999999999999999999999999999998 79999999999999999999999999988887    


Q ss_pred             CCCCccchhHHHH-HHHHHHHHHhcCCCCcchhhH
Q psy13451        193 NNHLPIEQDKYVN-EFSMVESAVFTEPKDQSAWFY  226 (522)
Q Consensus       193 ~~~~~~~~~~~~~-el~~~~~ai~~~p~~~s~W~y  226 (522)
                              ++..+ ..+++.+++..+|+|..+-.+
T Consensus       248 --------g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          248 --------GKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             --------TCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence                    45555 468999999999999877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=5.8e-10  Score=115.36  Aligned_cols=188  Identities=12%  Similarity=0.039  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc----
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS----  117 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~----  117 (522)
                      ++|...+.+++.++|++..+|+..+.++...+.          +++++..++++++.+|++..+|+..+.+.....    
T Consensus       230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~  299 (472)
T 4g1t_A          230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE----------PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM  299 (472)
T ss_dssp             CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc----------hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence            578888888888888888888888888888877          799999999999999999999998887764320    


Q ss_pred             ------------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH--hhHH-H
Q psy13451        118 ------------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA--WHYR-S  182 (522)
Q Consensus       118 ------------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa--W~~r-~  182 (522)
                                  ....+++++..++++++.+|.+..+|...+.+....+. +++++++++++++.++.+...  ++++ +
T Consensus       300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~  378 (472)
T 4g1t_A          300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYG  378 (472)
T ss_dssp             HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence                        01236788999999999999999999999999999988 799999999999999887653  2222 2


Q ss_pred             HH-hchhCCCCCCCCccchhHHHHHHHHHHHH------------------------HhcCCCCcchhhHHHHHhccCCCc
Q psy13451        183 KL-LPLLYPDPNNHLPIEQDKYVNEFSMVESA------------------------VFTEPKDQSAWFYQRWLLGERTSP  237 (522)
Q Consensus       183 ~l-l~~l~~~~~~~~~~~~~~~~~el~~~~~a------------------------i~~~p~~~s~W~y~~~ll~~~~~~  237 (522)
                      .+ ....            +.++++++++.+|                        +..+|++..+|..++.+....+++
T Consensus       379 ~~~~~~~------------~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~  446 (472)
T 4g1t_A          379 NFQLYQM------------KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM  446 (472)
T ss_dssp             HHHHHTS------------SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHC------------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            22 1122            3344555555444                        555788889999999988877766


Q ss_pred             ccceecccCCCceEEEEecccccccc
Q psy13451        238 VQIISAGVLPSGVTFVTFNQLVDLTS  263 (522)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (522)
                      ..           |+..|.+++++.+
T Consensus       447 ~~-----------A~~~y~kALe~~~  461 (472)
T 4g1t_A          447 QQ-----------ADEDSERGLESGS  461 (472)
T ss_dssp             C-------------------------
T ss_pred             HH-----------HHHHHHHHHhcCC
Confidence            55           7888999888654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=2e-10  Score=98.67  Aligned_cols=129  Identities=7%  Similarity=-0.167  Sum_probs=115.1

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHH
Q psy13451         46 SLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKE  125 (522)
Q Consensus        46 ~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~e  125 (522)
                      ..+.+++.++|++..+|..++.++...+.          +++++..++.++..+|++..+|...+.++...   ++++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A   71 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK----------WDDAQKIFQALCMLDHYDARYFLGLGACRQSL---GLYEQA   71 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHcc----------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH---hhHHHH
Confidence            35677889999999999999999999888          79999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        126 LELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       126 l~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      +.++++++..+|.+..+|.+.+.++..++. +++++++++++++.+|.+...+..+..+...+
T Consensus        72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           72 LQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999998 79999999999999999887766655544433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.14  E-value=1.5e-10  Score=100.51  Aligned_cols=124  Identities=6%  Similarity=-0.158  Sum_probs=114.8

Q ss_pred             HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451         90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus        90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~  169 (522)
                      ..+..++..+|++..+|+.++.++...   +++++++..+++++..+|.|..+|..++.+....+. ++++++++++++.
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~   83 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQS---GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAV   83 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence            356788999999999999999999998   999999999999999999999999999999999998 7999999999999


Q ss_pred             hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHH
Q psy13451        170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRW  229 (522)
Q Consensus       170 ~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~  229 (522)
                      .+|.|..+|.+++.++..+            +.++++++++.+++..+|++...+..+..
T Consensus        84 l~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQX------------GELAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            9999999999999999988            88999999999999999998876554433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.14  E-value=1.9e-09  Score=100.34  Aligned_cols=173  Identities=5%  Similarity=-0.076  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN---SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY  103 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~---t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y  103 (522)
                      .+.........|++ ++|+..+++++..+|+..   .+|..++.++...+.          +++++..++.+++.+|++.
T Consensus         7 ~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            7 IYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD----------LPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHCcCCC
Confidence            44555666677888 899999999999999864   789999999999988          7999999999999999998


Q ss_pred             c---chhhHHHHHHHhc---------------CCCChHHHHHHHHHHHhhcCCCcchhh-----------------HHHH
Q psy13451        104 G---TWFQRCYVLDHIS---------------RAPNYEKELELCNYYLELDERNFHCWD-----------------YRRY  148 (522)
Q Consensus       104 ~---~W~~R~~il~~l~---------------~~~~~~~el~~~~~~l~~d~kn~~aW~-----------------~R~~  148 (522)
                      .   +|+.++.+...+.               ..+++++++..++++++.+|.+..+|.                 ..+.
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~  155 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE  155 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6   8999999887630               135789999999999999999999984                 4455


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhcCCcc---hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcch
Q psy13451        149 VTDRHKVAPLKELNYSTEKIEANFSNY---SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSA  223 (522)
Q Consensus       149 ~l~~~~~~~~~el~~~~~~i~~~~~n~---saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~  223 (522)
                      +....+. +.+++..++++++.+|.+.   .+|..++.+...+            +.++++++.++.+....|.+..-
T Consensus       156 ~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~------------g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          156 YYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM------------QMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHhhCCCchhh
Confidence            5666666 6899999999999999986   6799999999998            88999999999999999987643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.4e-10  Score=115.77  Aligned_cols=107  Identities=18%  Similarity=0.268  Sum_probs=81.6

Q ss_pred             cEEEecCC-CCCCcccccCCCCCCccEEEcCC-CCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCC
Q psy13451        390 KQVDLSNN-PLTNNCLRHLTPLVACESLKLTH-CSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS  465 (522)
Q Consensus       390 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~  465 (522)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |.|+.++  .|..+++|+.|+|++|.|+++++..             
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------------   75 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-------------   75 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-------------
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-------------
Confidence            35688887 787 5777 88888899999985 8888876  3788888888888888776654321             


Q ss_pred             CCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        466 LHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       466 ~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                         |..+++|+.|+|++|.|+.+++..+..++ |+.|+|.+|+|.|+|.+
T Consensus        76 ---~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           76 ---FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             ---GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             ---hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence               45667888888888888888776666665 88888888888888753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.12  E-value=3.3e-10  Score=98.24  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------chH-----HHHHHHHHHHHhhccccHHHHHHHHHHHH
Q psy13451         22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD-------INS-----LWNYRKEVLLHMKATLAEEELHELVDREL   89 (522)
Q Consensus        22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~-------~~t-----~wn~R~~~l~~l~~~~~~~~~~~~~~~eL   89 (522)
                      .+-..+.+......+.|.| ++|+..|+++|.++|+       +..     +|+.|+.++..+++          +++++
T Consensus         9 ~~a~~~~~~G~~l~~~g~~-eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr----------~~eAl   77 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEY-DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS----------FDEAL   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC----------HHHHH
Confidence            3444566677777788888 8999999999999999       444     99999999999998          79999


Q ss_pred             HHHHHHHHh-------CCCCccch----hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchh
Q psy13451         90 KLTKDCLLA-------QPKSYGTW----FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW  143 (522)
Q Consensus        90 ~~~~~~l~~-------~pk~y~~W----~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW  143 (522)
                      ..++.+|.+       +|+++.+|    +.|+.++..+   +++++++..|+++++++|.+-...
T Consensus        78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l---gr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL---GRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC---CCHHHHHHHHHHHHhcCCCcHHHH
Confidence            999999999       99999999    9999999999   999999999999999999776554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=3.1e-10  Score=112.39  Aligned_cols=142  Identities=20%  Similarity=0.276  Sum_probs=99.2

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC----CCCCC--------CCC---
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS----LSSLH--------VFP---  430 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~--------~~~---  430 (522)
                      +.+++++ .++.++.  |.++++|+.|++++|.++...+..|.++.++..+.+..+.    ...+.        .+.   
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i  182 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI  182 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence            4666666 6666655  6777777777777777665555666666555555544311    00000        000   


Q ss_pred             -----------------------------------------CCCCcCEEEccCCCCCccc------cCcccEEEcCCCCC
Q psy13451        431 -----------------------------------------HLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSL  463 (522)
Q Consensus       431 -----------------------------------------~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l  463 (522)
                                                               .+++|+.+++++|.++.++      +.+|+.|++++| +
T Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i  261 (329)
T 3sb4_A          183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L  261 (329)
T ss_dssp             EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence                                                     2678888899888888776      568888999887 7


Q ss_pred             CCCCC--CCCCCCCC-EEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        464 SSLHV--FPHLPSLE-SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       464 ~~~~~--l~~~~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +.++.  |.++.+|+ .+++.+ .++.++..+|.+|++|+.|++++|.+...
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            77765  88888898 999988 78888888899999999999988877643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.09  E-value=2.2e-10  Score=113.75  Aligned_cols=133  Identities=12%  Similarity=-0.018  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---------------ccch
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---------------YGTW  106 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---------------y~~W  106 (522)
                      ++|++.+.+++..+|+...+|+.++.++...+.          +++++..+++++..+|.+               ..+|
T Consensus       130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK----------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence            346677788889999999999999999999988          799999999999999999               5999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      ..++.++..+   +++++++..|+++++++|.|..+|..++.++..++. +++++++++++++.+|.|..+|..++.+..
T Consensus       200 ~nla~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          200 LNLAMCHLKL---QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999999999998 799999999999999999999999999998


Q ss_pred             hh
Q psy13451        187 LL  188 (522)
Q Consensus       187 ~l  188 (522)
                      .+
T Consensus       276 ~~  277 (336)
T 1p5q_A          276 RI  277 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9e-10  Score=92.09  Aligned_cols=118  Identities=10%  Similarity=0.011  Sum_probs=109.1

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      |+...+|..++..+...+.          +++++..++.++..+|++..+|..++.++..+   +++++++..++++++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSD----------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEK   67 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCHHHHHHHHHHHHHh
Confidence            5567889999999999888          79999999999999999999999999999999   9999999999999999


Q ss_pred             cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc------CCcchHhhHHHHHhch
Q psy13451        136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN------FSNYSAWHYRSKLLPL  187 (522)
Q Consensus       136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~------~~n~saW~~r~~ll~~  187 (522)
                      +|.+..+|..++.+...++. ++++++++.++++.+      |.|..++.....+...
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999998 799999999999999      9998888777665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.06  E-value=1.3e-09  Score=95.94  Aligned_cols=117  Identities=13%  Similarity=-0.026  Sum_probs=110.2

Q ss_pred             CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      +++...+|..++.++...+.          +++++..++.++..+|++..+|..++.++...   +++++++..++++++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKE----------YSKAIDLYTQALSIAPANPIYLSNRAAAYSAS---GQHEKAAEDAELATV   73 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHH
Confidence            56678899999999999888          79999999999999999999999999999999   999999999999999


Q ss_pred             hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      ++|.+..+|..++.+...++. ++++++++.++++.+|.|..+|..++...
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            999999999999999999998 79999999999999999999998887543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.06  E-value=2.1e-10  Score=98.52  Aligned_cols=125  Identities=6%  Similarity=-0.147  Sum_probs=112.9

Q ss_pred             HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451         90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus        90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~  169 (522)
                      ..+..++..+|++..+|+.++.++...   +++++++..+++++..+|.+..+|...+.+....+. ++++++++++++.
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~   80 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQA---GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGAL   80 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence            456777889999999999999999998   999999999999999999999999999999999998 7999999999999


Q ss_pred             hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451        170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWL  230 (522)
Q Consensus       170 ~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~l  230 (522)
                      .+|.|..+|.+++.++..+            +.++++++++++++..+|++...+..+..+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQL------------GDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            9999999999999999988            889999999999999999998777654443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=4.8e-10  Score=110.94  Aligned_cols=93  Identities=17%  Similarity=0.271  Sum_probs=83.2

Q ss_pred             CCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc-EEEcCCCCCCCCCC--CCCCCCCCEE
Q psy13451        410 LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ-SLKLTHCSLSSLHV--FPHLPSLESL  478 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~-~L~Ls~n~l~~~~~--l~~~~~L~~L  478 (522)
                      +++|+.+++++|+++.++  .|..+++|+.+++++| ++.++      +.+|+ .+.+.+ .++.++.  |.++++|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            689999999999999987  5899999999999998 77665      57798 999998 8888875  9999999999


Q ss_pred             EccCCCCCCCChhhhcCCCCccEEEe
Q psy13451        479 DVSHNAIDHIEDSVFAKYEACVQVIL  504 (522)
Q Consensus       479 ~Ls~N~l~~~~~~~l~~l~~L~~L~L  504 (522)
                      ++++|.++.++..+|.++++|+.+..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=7.4e-12  Score=126.07  Aligned_cols=176  Identities=18%  Similarity=0.180  Sum_probs=98.4

Q ss_pred             hcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccc--cC-cCCCCcccEEEecCCCCCCcccccC
Q psy13451        332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSI--HH-MHCFAHCKQVDLSNNPLTNNCLRHL  407 (522)
Q Consensus       332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l--~~-~~~l~~L~~L~Ls~n~l~~~~~~~~  407 (522)
                      ..+.|+.|+++++.+.......+...  +.. .... +.|++++|.++..  .. ...+++|+.|+|++|.++......+
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~--L~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAV--LGS-GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHH--HSS-CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHH--Hhh-CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            34567777777776554333322211  111 0122 5777887777652  22 2334567777888877764433333


Q ss_pred             -----CCCCCccEEEcCCCCCCCCC------CCCCCCCcCEEEccCCCCCccc----------cCcccEEEcCCCCCCCC
Q psy13451        408 -----TPLVACESLKLTHCSLSSLH------VFPHLPSLESLDVSHNAPNIIL----------CVYFQSLKLTHCSLSSL  466 (522)
Q Consensus       408 -----~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~ls~N~l~~~~----------~~~L~~L~Ls~n~l~~~  466 (522)
                           ...++|+.|+|++|.|+...      .+..+++|++|+|++|.++...          +++|+.|+|++|.|++.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence                 23567777777777776521      2355667777777777776321          35677777777777654


Q ss_pred             CC------CCCCCCCCEEEccCCCCCCCChhhhcCCCC-----ccEEE--ecCCCCc
Q psy13451        467 HV------FPHLPSLESLDVSHNAIDHIEDSVFAKYEA-----CVQVI--LTGNPVS  510 (522)
Q Consensus       467 ~~------l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~-----L~~L~--L~~N~l~  510 (522)
                      +.      +...++|+.|+|++|.|++.....+..+..     |+.+.  +.+|.++
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            31      334567777777777777655444433311     55555  5555554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.04  E-value=5.3e-10  Score=99.71  Aligned_cols=161  Identities=12%  Similarity=0.017  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      +.........|++ ++|+..+.+++..+|++..+|...+.++...+.          +++++..++.++..+| +..++.
T Consensus        10 ~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p-~~~~~~   77 (176)
T 2r5s_A           10 LKQVSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETKQ----------FELAQELLATIPLEYQ-DNSYKS   77 (176)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC----------HHHHHHHHTTCCGGGC-CHHHHH
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHhhhccC-ChHHHH
Confidence            3444555667776 889999999999999999999999999999988          7999999999999999 766665


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc--chHhhHHHHHh
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN--YSAWHYRSKLL  185 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n--~saW~~r~~ll  185 (522)
                      ....+....  .....+++..++++++.+|.+..+|...+.++...+. ++++++.+.++++.+|..  ..+|...+.++
T Consensus        78 ~~~~~~~~~--~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~  154 (176)
T 2r5s_A           78 LIAKLELHQ--QAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTFMDIL  154 (176)
T ss_dssp             HHHHHHHHH--HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHh--hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence            555442211  0122357999999999999999999999999999998 799999999999999976  55999999988


Q ss_pred             chhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451        186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~  215 (522)
                      ..+            +..++++..+.+++.
T Consensus       155 ~~~------------g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          155 SAL------------GQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHH------------CSSCHHHHHHHHHHH
T ss_pred             HHh------------CCCCcHHHHHHHHHH
Confidence            888            555677777777764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=6.9e-10  Score=92.84  Aligned_cols=117  Identities=5%  Similarity=-0.044  Sum_probs=107.5

Q ss_pred             CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        100 PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       100 pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                      |....+|..++..+...   +++++++..++++++.+|.+..+|..++.+....+. ++++++.++++++.+|.+..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHH
Confidence            44567888999988888   999999999999999999999999999999999998 79999999999999999999999


Q ss_pred             HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC------CCCcchhhHHHHHhc
Q psy13451        180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE------PKDQSAWFYQRWLLG  232 (522)
Q Consensus       180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~------p~~~s~W~y~~~ll~  232 (522)
                      .++.++..+            +.++++++.+.+++..+      |.+..++.....+..
T Consensus        77 ~lg~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           77 RKATAQIAV------------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH------------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            999999988            78999999999999999      999988887766543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.02  E-value=2.2e-09  Score=95.06  Aligned_cols=156  Identities=9%  Similarity=-0.039  Sum_probs=142.3

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                      ...+|..++.+....+.          +++++..++.++..+|++..+|...+.+....   +++++++..++++++.+|
T Consensus         7 ~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~   73 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGR----------YSQAVMLLEQVYDADAFDVDVALHLGIAYVKT---GAVDRGTELLERSLADAP   73 (186)
T ss_dssp             HHHHHHHHHHHHHHHTC----------HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCccChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCC
Confidence            34677778888888777          79999999999999999999999999999988   899999999999999999


Q ss_pred             CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451        138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE  217 (522)
Q Consensus       138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~  217 (522)
                      .+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....            +.++++++++.+++..+
T Consensus        74 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQK-YDLAVPLLIKVAEANPINFNVRFRLGVALDNL------------GRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc------------CcHHHHHHHHHHHHhcC
Confidence            999999999999999888 79999999999999999999999999988877            78999999999999999


Q ss_pred             CCCcchhhHHHHHhccCCCccc
Q psy13451        218 PKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       218 p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      |.+..+|.....+....++...
T Consensus       141 ~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A          141 PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHH
Confidence            9999999988888877776554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.01  E-value=3.9e-10  Score=116.89  Aligned_cols=133  Identities=12%  Similarity=-0.025  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---------------ccch
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---------------YGTW  106 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---------------y~~W  106 (522)
                      ++|++.+..++..+|+...+|+.++.++...+.          +++++..+++++..+|.+               ..+|
T Consensus       251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK----------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            356777788889999999999999999999888          899999999999999999               6999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      ..++.++.++   +++++++..|+++++++|+|..+|..|+.++..++. +++++.++.++++.+|.|..+|..++.+..
T Consensus       321 ~nla~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          321 LNLAMCYLKL---REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999999999998 799999999999999999999999999988


Q ss_pred             hh
Q psy13451        187 LL  188 (522)
Q Consensus       187 ~l  188 (522)
                      .+
T Consensus       397 ~~  398 (457)
T 1kt0_A          397 KA  398 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=6.2e-10  Score=99.31  Aligned_cols=158  Identities=8%  Similarity=-0.080  Sum_probs=130.3

Q ss_pred             CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      ||.....+..++..+...+.          +++++..++.+++.+|++..+|...+.++...   +++++++..+++++.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~---g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE----------HAQALNVIQTLSDELQSRGDVKLAKADCLLET---KQFELAQELLATIPL   68 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC----------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT---TCHHHHHHHHTTCCG
T ss_pred             CCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHhhh
Confidence            56666777788888888877          79999999999999999999999999999998   999999999999999


Q ss_pred             hcCCCcchhhHHHHHHH-hcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHH
Q psy13451        135 LDERNFHCWDYRRYVTD-RHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA  213 (522)
Q Consensus       135 ~d~kn~~aW~~R~~~l~-~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~a  213 (522)
                      .+| +...+...+.+.. .... ..++++.++++++.+|.|..+|...+.++...            +.++++++.+.++
T Consensus        69 ~~p-~~~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~------------g~~~~A~~~~~~~  134 (176)
T 2r5s_A           69 EYQ-DNSYKSLIAKLELHQQAA-ESPELKRLEQELAANPDNFELACELAVQYNQV------------GRDEEALELLWNI  134 (176)
T ss_dssp             GGC-CHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred             ccC-ChHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------ccHHHHHHHHHHH
Confidence            999 7665555544422 1111 23578999999999999999999999999888            8899999999999


Q ss_pred             HhcCCCC--cchhhHHHHHhccCCCccc
Q psy13451        214 VFTEPKD--QSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       214 i~~~p~~--~s~W~y~~~ll~~~~~~~~  239 (522)
                      +..+|+.  ..+|.....++...++...
T Consensus       135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A          135 LKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            9999986  4589888888877766543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.00  E-value=1.5e-09  Score=95.52  Aligned_cols=116  Identities=11%  Similarity=-0.023  Sum_probs=108.1

Q ss_pred             CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHh
Q psy13451         99 QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW  178 (522)
Q Consensus        99 ~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW  178 (522)
                      +++...+|..++.++...   +++++++.+++++++.+|.+..+|..++.+....+. +++++++++++++.+|.+..+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMAR---KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHH
Confidence            456678899999999988   999999999999999999999999999999999998 7999999999999999999999


Q ss_pred             hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451        179 HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWL  230 (522)
Q Consensus       179 ~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~l  230 (522)
                      ..++.++..+            +.++++++++.+++..+|++..+|..+...
T Consensus        83 ~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           83 SRLGLARFDM------------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHHT------------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            9999999988            889999999999999999999999666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=5.6e-10  Score=111.28  Aligned_cols=98  Identities=23%  Similarity=0.259  Sum_probs=79.4

Q ss_pred             cEEEecCC-CcccccCcCCCCcccEEEecC-CCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSL-QLTSIHHMHCFAHCKQVDLSN-NPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n-~l~~l~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      ..++++++ +|+.+|.+..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++++  .|..+++|+.|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            46788888 899998888888999999996 9999777788999999999999999999875  4788999999999999


Q ss_pred             CCCccccC-----cccEEEcCCCCCCC
Q psy13451        444 APNIILCV-----YFQSLKLTHCSLSS  465 (522)
Q Consensus       444 ~l~~~~~~-----~L~~L~Ls~n~l~~  465 (522)
                      .|+.++..     .|+.|+|++|.+..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            88876632     25555555555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=6.5e-09  Score=100.84  Aligned_cols=166  Identities=8%  Similarity=0.004  Sum_probs=132.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC-----
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPD------INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS-----  102 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~------~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~-----  102 (522)
                      .+..|.+ ++|++.+.+++.+.++      ...+|+..+.++..++.          +++++..+++++...|+.     
T Consensus        47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN----------SVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHcCCHHH
Confidence            3445666 8999999999999542      36899999999999988          799999999999988765     


Q ss_pred             -ccchhhHHHHHHH-hcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451        103 -YGTWFQRCYVLDH-ISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN  174 (522)
Q Consensus       103 -y~~W~~R~~il~~-l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n  174 (522)
                       ..+|+..+.++.. +   +++++++.+++++++++|.+      ..+|...+.+....+. +++++++++++++.+|.+
T Consensus       116 ~a~~~~~lg~~~~~~l---g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          116 GANFKFELGEILENDL---HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC
Confidence             4578888888887 6   89999999999999998876      4578888999999998 799999999999999987


Q ss_pred             ch-------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhH
Q psy13451        175 YS-------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY  226 (522)
Q Consensus       175 ~s-------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y  226 (522)
                      ..       +|...+.+...+            +.+++++.++++++.++|+...++..
T Consensus       192 ~~~~~~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          192 RLSQWSLKDYFLKKGLCQLAA------------TDAVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHGGGCC---------H
T ss_pred             CcccHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence            64       456677777766            78999999999999999998876543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=3.5e-09  Score=102.54  Aligned_cols=163  Identities=8%  Similarity=-0.018  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT  105 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~  105 (522)
                      ............|++ ++|+..+.+++..+|++..+|...+.++...++          +++++..++.++..+|.....
T Consensus       119 ~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          119 LXAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNR----------SEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC----------HHHHHHHHTTSCGGGCSHHHH
T ss_pred             hHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC----------HHHHHHHHHhCchhhcchHHH
Confidence            344555566677777 889999999999999999999999999999998          799999999999999977766


Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc--chHhhHHHH
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN--YSAWHYRSK  183 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n--~saW~~r~~  183 (522)
                      +...+..+...   ....++++.+.++++.+|.+..+|...+-++...++ ++++++.+.++++.+|.+  ..+|...+.
T Consensus       188 ~~~~~~~l~~~---~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          188 GLVAQIELLXQ---AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHHHHHH---HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             HHHHHHHHHhh---cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            66666556665   556789999999999999999999999999999998 799999999999999999  889999999


Q ss_pred             HhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451        184 LLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       184 ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~  215 (522)
                      ++..+            +..+++...+.+++.
T Consensus       264 ~~~~~------------g~~~~a~~~~r~al~  283 (287)
T 3qou_A          264 ILAAL------------GTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHH------------CTTCHHHHHHHHHHH
T ss_pred             HHHHc------------CCCCcHHHHHHHHHH
Confidence            99888            455666666666653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.98  E-value=4.5e-09  Score=90.90  Aligned_cols=99  Identities=10%  Similarity=0.118  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc---C
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS---R  118 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~---~  118 (522)
                      ++|+..+.+++.+||++..+|+..+.++..++......+..+.+++++..++++|+++|++..+|+..+-++..+.   |
T Consensus        19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P   98 (158)
T 1zu2_A           19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP   98 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence            7789999999999999999999999999998765555556677899999999999999999999999999998760   0


Q ss_pred             -----CCChHHHHHHHHHHHhhcCCCc
Q psy13451        119 -----APNYEKELELCNYYLELDERNF  140 (522)
Q Consensus       119 -----~~~~~~el~~~~~~l~~d~kn~  140 (522)
                           .+++++++++|+++++++|.|.
T Consensus        99 ~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           99 DETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             chhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                 1368888888888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=3.2e-11  Score=121.39  Aligned_cols=147  Identities=18%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             cEEEecCCCccccc-----C-cC-CCCcccEEEecCCCCCCcccccCC-CCCCccEEEcCCCCCCCCC--C----C-CCC
Q psy13451        368 QITNLSSLQLTSIH-----H-MH-CFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLH--V----F-PHL  432 (522)
Q Consensus       368 ~~L~ls~n~l~~l~-----~-~~-~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~--~----~-~~l  432 (522)
                      +.|++++|.|+...     . +. ..++|+.|+|++|.++......+. .+++|+.|+|++|.|+...  .    + ...
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~  154 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ  154 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence            58999999998632     2 22 347999999999999755444443 4578999999999998642  1    2 356


Q ss_pred             CCcCEEEccCCCCCcc----------ccCcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCCCCCCh----hh
Q psy13451        433 PSLESLDVSHNAPNII----------LCVYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAIDHIED----SV  492 (522)
Q Consensus       433 ~~L~~L~ls~N~l~~~----------~~~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l~~~~~----~~  492 (522)
                      ++|+.|++++|.++..          ..++|+.|+|++|.|++.+      .+..+++|+.|+|++|.|++...    ..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            7899999999999742          2578999999999998743      15667899999999999987543    34


Q ss_pred             hcCCCCccEEEecCCCCccccc
Q psy13451        493 FAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       493 l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +..+++|+.|+|++|+|+....
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHhCCCCCEEeccCCCCCHHHH
Confidence            5567999999999999985543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.97  E-value=5.1e-09  Score=101.40  Aligned_cols=174  Identities=9%  Similarity=-0.052  Sum_probs=148.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc
Q psy13451         38 QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS  117 (522)
Q Consensus        38 ~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~  117 (522)
                      |..+.+.+.  ..+-..-|+...++...+..+...+.          +++++..++.++..+|++..+|...+.++... 
T Consensus        98 g~~~~~~l~--~~l~~~lp~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-  164 (287)
T 3qou_A           98 GPQPEEAIR--ALLDXVLPREEELXAQQAMQLMQESN----------YTDALPLLXDAWQLSNQNGEIGLLLAETLIAL-  164 (287)
T ss_dssp             SCCCHHHHH--HHHHHHSCCHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT-
T ss_pred             CCCCHHHHH--HHHHHHcCCchhhHHHHHHHHHhCCC----------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC-
Confidence            444554333  33334459999999999999999888          79999999999999999999999999999998 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451        118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP  197 (522)
Q Consensus       118 ~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~  197 (522)
                        +++++++..+++++..+|.+...+...+..+...+. ..++++.+.++++.+|.|..+|...+.++...         
T Consensus       165 --g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~---------  232 (287)
T 3qou_A          165 --NRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA-DTPEIQQLQQQVAENPEDAALATQLALQLHQV---------  232 (287)
T ss_dssp             --TCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------
T ss_pred             --CCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc-cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc---------
Confidence              999999999999999999777666666665656555 57889999999999999999999999999888         


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCC--cchhhHHHHHhccCCCccc
Q psy13451        198 IEQDKYVNEFSMVESAVFTEPKD--QSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       198 ~~~~~~~~el~~~~~ai~~~p~~--~s~W~y~~~ll~~~~~~~~  239 (522)
                         ++++++++.+.+++..+|++  ..+|..+.-++...++...
T Consensus       233 ---g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          233 ---GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             ---TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             ---ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence               89999999999999999999  8899999999888776443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.97  E-value=3.8e-09  Score=93.91  Aligned_cols=128  Identities=10%  Similarity=0.044  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH-HHhcCCCC--HHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYV-TDRHKVAP--LKEL  161 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~-l~~~~~~~--~~el  161 (522)
                      +++++..++.++..+|.+..+|...+.+....   +++++++..++++++.+|.+..+|...+.+ ....+. +  ++++
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~~~~~A~  101 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQ---NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ-HMTAQTR  101 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC-cchHHHH
Confidence            67888999999999999999999999999998   999999999999999999999999999999 666676 5  8999


Q ss_pred             HHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451        162 NYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQR  228 (522)
Q Consensus       162 ~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~  228 (522)
                      .+++++++.+|.+..+|...+.+....            +.+++++.++.+++..+|.+...+....
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQ------------ANYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            999999999999999999999998887            7899999999999999999987665433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.96  E-value=9e-09  Score=97.74  Aligned_cols=157  Identities=10%  Similarity=-0.082  Sum_probs=137.1

Q ss_pred             HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---ccchhhHHHHHHHhcCCCChHHHHHH
Q psy13451         52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YGTWFQRCYVLDHISRAPNYEKELEL  128 (522)
Q Consensus        52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~~W~~R~~il~~l~~~~~~~~el~~  128 (522)
                      ..++|+...++..++..+...+.          +++++..++.++..+|++   ..+|..++.+....   +++++++..
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~   74 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGK----------YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN---KEYLLAASE   74 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTC----------HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh---CcHHHHHHH
Confidence            45789999999999999999888          899999999999999999   89999999999999   999999999


Q ss_pred             HHHHHhhcCCC---cchhhHHHHHHHh--------cCCCCHHHHHHHHHHHHhcCCcchHh-----------------hH
Q psy13451        129 CNYYLELDERN---FHCWDYRRYVTDR--------HKVAPLKELNYSTEKIEANFSNYSAW-----------------HY  180 (522)
Q Consensus       129 ~~~~l~~d~kn---~~aW~~R~~~l~~--------~~~~~~~el~~~~~~i~~~~~n~saW-----------------~~  180 (522)
                      ++++++.+|.+   ..+|...+.+...        .+. ++++++.++++++.+|.+..++                 ..
T Consensus        75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~  153 (261)
T 3qky_A           75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE  153 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998866   4578899999888        666 6899999999999999998888                 66


Q ss_pred             HHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc---chhhHHHHHhccC
Q psy13451        181 RSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ---SAWFYQRWLLGER  234 (522)
Q Consensus       181 r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~---s~W~y~~~ll~~~  234 (522)
                      ++.+....            +.+++++..+++++..+|++.   .+|.+.+.+....
T Consensus       154 la~~~~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          154 AARLYERR------------ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHT------------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc------------cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            67777776            789999999999999999965   4777777766544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=4.6e-09  Score=110.83  Aligned_cols=179  Identities=9%  Similarity=-0.013  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------hhccccHHHHHHHHHHHHHHHHHHHH-hCCCCccchhhHHHHH
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLH-------MKATLAEEELHELVDRELKLTKDCLL-AQPKSYGTWFQRCYVL  113 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~-------l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pk~y~~W~~R~~il  113 (522)
                      .+++..++++|..+|.+..+|...+.++..       .+..   +....+.++++..++.+++ .+|++..+|...+.+.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~---~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~  331 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM---NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  331 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch---hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            478899999999999999999999999886       3431   1011112489999999997 8999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHhhcCCCc-chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc-hhCCC
Q psy13451        114 DHISRAPNYEKELELCNYYLELDERNF-HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP-LLYPD  191 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~l~~d~kn~-~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~-~l~~~  191 (522)
                      ...   ++++++...++++++.+|.+. .+|...+.+..+.+. ++++.+.+.++++..|.++..|...+.+.. ..   
T Consensus       332 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~---  404 (530)
T 2ooe_A          332 ESR---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---  404 (530)
T ss_dssp             HHT---TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT---
T ss_pred             Hhc---CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc---
Confidence            998   899999999999999999996 599999998888776 689999999999999988887766555422 22   


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                               +.++++...+++++..+|++..+|....-++.+.+....
T Consensus       405 ---------~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~  443 (530)
T 2ooe_A          405 ---------KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  443 (530)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred             ---------CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence                     568999999999999999999999888877777665443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.95  E-value=2.5e-08  Score=82.89  Aligned_cols=135  Identities=16%  Similarity=0.256  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451         60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN  139 (522)
Q Consensus        60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn  139 (522)
                      .+|+..+.++...+.          +++++..++.++..+|.+..+|...+.+....   +++++++..+++++..+|.+
T Consensus         2 ~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHcCc----------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCc
Confidence            468888888888777          79999999999999999999999999999888   89999999999999999999


Q ss_pred             cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451        140 FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK  219 (522)
Q Consensus       140 ~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~  219 (522)
                      ..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....            +.++++++++.+++..+|+
T Consensus        69 ~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ------------GDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------------ccHHHHHHHHHHHHccCCC
Confidence            9999999999999887 79999999999999999999999998888776            7899999999999999986


Q ss_pred             C
Q psy13451        220 D  220 (522)
Q Consensus       220 ~  220 (522)
                      +
T Consensus       136 ~  136 (136)
T 2fo7_A          136 S  136 (136)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.94  E-value=2.8e-08  Score=104.85  Aligned_cols=174  Identities=8%  Similarity=-0.054  Sum_probs=147.4

Q ss_pred             cCCCC------HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc-cchhh
Q psy13451         37 NQEYD------DEALSLTSEVLR-NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-GTWFQ  108 (522)
Q Consensus        37 ~~~~~------~eal~~~~~~l~-~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-~~W~~  108 (522)
                      .|+++      ++|.+.+++++. ++|++..+|.....+....+.          ++++...++++++.+|++. .+|..
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~  361 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDIDPTLVYIQ  361 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhCccccCchHHHHH
Confidence            56664      489999999997 899999999999999999887          7999999999999999986 59999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH-HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451        109 RCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT-DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL  187 (522)
Q Consensus       109 R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l-~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~  187 (522)
                      .+.++.+.   ++++++.+.++++++..|.+++.|.-.+++. ...+. .+++...++++++.+|.+..+|...+.+...
T Consensus       362 ~~~~~~~~---~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~  437 (530)
T 2ooe_A          362 YMKFARRA---EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  437 (530)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHh---cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence            99998888   7889999999999999999999888777663 23555 6899999999999999999999988887776


Q ss_pred             hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc----hhhHHHHHhccCCC
Q psy13451        188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS----AWFYQRWLLGERTS  236 (522)
Q Consensus       188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s----~W~y~~~ll~~~~~  236 (522)
                      .            +..+++...+++++...|.+..    +|....-.....+.
T Consensus       438 ~------------g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~  478 (530)
T 2ooe_A          438 L------------NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  478 (530)
T ss_dssp             T------------TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred             C------------CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            6            7789999999999999877655    88543333333343

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=7.6e-09  Score=99.85  Aligned_cols=175  Identities=13%  Similarity=0.073  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +..........|++ ++|+..+.+++.++|++..+|..++.++..++.          +++++..++++++.+|.+..+|
T Consensus         7 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~   75 (281)
T 2c2l_A            7 LKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ----------PEQALADCRRALELDGQSVKAH   75 (281)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHH
Confidence            34445566677777 889999999999999999999999999999988          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      +.++.++..+   +++++++..+.++++.+|.+........|.....    .+...+........+.+.....+.+.++.
T Consensus        76 ~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~l~~  148 (281)
T 2c2l_A           76 FFLGQCQLEM---ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----AKKKRWNSIEERRIHQESELHSYLTRLIA  148 (281)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH----HHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999999998   8999999999999999998765544333333321    22333333444567777777777766552


Q ss_pred             hhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        187 LLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       187 ~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                                    +.++++++.+..|+..+|+|.....-..-+..+
T Consensus       149 --------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  181 (281)
T 2c2l_A          149 --------------AERERELEECQRNHEGHEDDGHIRAQQACIEAK  181 (281)
T ss_dssp             --------------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence                          688999999999999999887666555444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.92  E-value=7.3e-09  Score=92.04  Aligned_cols=127  Identities=11%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH-HHH
Q psy13451         37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV-LDH  115 (522)
Q Consensus        37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i-l~~  115 (522)
                      .|++ ++|+..+.+++..+|++..+|...+.++...+.          +++++..++.+++.+|.+..+|...+.+ ...
T Consensus        23 ~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           23 QQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQND----------YSNSLLAYRQALQLRGENAELYAALATVLYYQ   91 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             ccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            3444 668999999999999999999999999999888          7999999999999999999999999999 556


Q ss_pred             hcCCCCh--HHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHh
Q psy13451        116 ISRAPNY--EKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW  178 (522)
Q Consensus       116 l~~~~~~--~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW  178 (522)
                      .   +++  ++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+...+
T Consensus        92 ~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           92 A---SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             T---TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred             c---CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence            6   666  999999999999999999999999999999988 7999999999999999997654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.90  E-value=4e-10  Score=120.68  Aligned_cols=147  Identities=10%  Similarity=0.058  Sum_probs=111.2

Q ss_pred             cEEEecC-----------CCccc--ccC-cCCCCcccEEEecCCCCCCcccccCCC-CCCccEEEcC----CCCCCCCC-
Q psy13451        368 QITNLSS-----------LQLTS--IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTP-LVACESLKLT----HCSLSSLH-  427 (522)
Q Consensus       368 ~~L~ls~-----------n~l~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~-  427 (522)
                      +.|++++           +.++.  ++. ...+++|+.|+++.|.+++..+..+.. +++|+.|+++    .|.+++.| 
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            5888883           46664  333 456889999999999998776666655 8899999996    66787753 


Q ss_pred             ------CCCCCCCcCEEEccCCC--CCcc-------ccCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCC
Q psy13451        428 ------VFPHLPSLESLDVSHNA--PNII-------LCVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIE  489 (522)
Q Consensus       428 ------~~~~l~~L~~L~ls~N~--l~~~-------~~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~  489 (522)
                            .+..+++|+.|++++|.  ++..       .+++|+.|++++|.+++..  . +..+++|+.|+|++|.+++..
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  504 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA  504 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence                  14568899999997543  5421       1678999999999988633  2 577899999999999987643


Q ss_pred             -hhhhcCCCCccEEEecCCCCccccc
Q psy13451        490 -DSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       490 -~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                       +..+..+++|+.|+|++|+++....
T Consensus       505 ~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          505 IAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             HHHHHHhcCccCeeECcCCcCCHHHH
Confidence             3345678999999999999986643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.87  E-value=1.2e-08  Score=84.89  Aligned_cols=103  Identities=3%  Similarity=-0.058  Sum_probs=91.6

Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      ...|..++.++...   +++++++..++++++.+|++..+|...+.+....+. +++++..++++++.+|.+..+|...+
T Consensus        17 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           17 HENPMEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CSCHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35688888888888   899999999999999999999999999999999998 79999999999999999999999999


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                      .++...            +.++++++.+.+++..+|++.
T Consensus        93 ~~~~~~------------g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           93 VSHTNE------------HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHH------------HHHHHHHHHHHHHHC------
T ss_pred             HHHHHc------------CCHHHHHHHHHHHHHhCcCCC
Confidence            999988            899999999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=4e-08  Score=91.16  Aligned_cols=155  Identities=8%  Similarity=-0.048  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc---cchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY---GTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y---~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      ..++..++..+...+.          +++++..++.++..+|.+.   .+|..++.+....   +++++++..++++++.
T Consensus         4 ~~~~~~~a~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGN----------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Confidence            4678888888888887          7999999999999999885   6899999999998   9999999999999999


Q ss_pred             cCCCcc---hhhHHHHHHHhc------------------CCCCHHHHHHHHHHHHhcCCcchHhhH--------------
Q psy13451        136 DERNFH---CWDYRRYVTDRH------------------KVAPLKELNYSTEKIEANFSNYSAWHY--------------  180 (522)
Q Consensus       136 d~kn~~---aW~~R~~~l~~~------------------~~~~~~el~~~~~~i~~~~~n~saW~~--------------  180 (522)
                      +|++..   +|.+++.+....                  +. +++++..++++++.+|.+..+|.-              
T Consensus        71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ-ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHC--------------CCHH-HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH-HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            999987   899999887652                  22 578999999999999999988843              


Q ss_pred             ---HHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc---chhhHHHHHhccCCCccc
Q psy13451        181 ---RSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ---SAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       181 ---r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~---s~W~y~~~ll~~~~~~~~  239 (522)
                         .+.+....            +.+++++..+++++..+|++.   .+|.+++.+..+.+....
T Consensus       150 ~~~~a~~~~~~------------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  202 (225)
T 2yhc_A          150 EYSVAEYYTER------------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ  202 (225)
T ss_dssp             HHHHHHHHHHH------------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHc------------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence               33333333            789999999999999999986   579888888888887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.86  E-value=1.1e-07  Score=78.97  Aligned_cols=127  Identities=18%  Similarity=0.280  Sum_probs=115.1

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451         33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV  112 (522)
Q Consensus        33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i  112 (522)
                      .....|++ ++|+..+.+++..+|++..+|...+.+....+.          +++++..++.++..+|.+..+|...+.+
T Consensus        10 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~   78 (136)
T 2fo7_A           10 AYYKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            33445555 789999999999999999999999999888877          7999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451        113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN  174 (522)
Q Consensus       113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n  174 (522)
                      ....   +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+
T Consensus        79 ~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           79 YYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTTC
T ss_pred             HHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCCC
Confidence            8888   899999999999999999999999999999999887 799999999999998864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.85  E-value=2.9e-08  Score=98.40  Aligned_cols=132  Identities=12%  Similarity=-0.010  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q psy13451         24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---------------NSLWNYRKEVLLHMKATLAEEELHELVDRE   88 (522)
Q Consensus        24 y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---------------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~e   88 (522)
                      ..............|++ ++|+..+.+++.++|++               ..+|+.++.++..++.          ++++
T Consensus       147 a~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~A  215 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA----------FSAA  215 (336)
T ss_dssp             HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred             HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC----------HHHH
Confidence            33444555566677777 88999999999999999               6999999999999998          7999


Q ss_pred             HHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy13451         89 LKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKI  168 (522)
Q Consensus        89 L~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i  168 (522)
                      +..+++++..+|++..+|+.++.++..+   +++++++..++++++++|.|..+|...+.+...++...+.+-..+.+++
T Consensus       216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          216 IESCNKALELDSNNEKGLSRRGEAHLAV---NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   9999999999999999999999999999999988763233345555555


Q ss_pred             H
Q psy13451        169 E  169 (522)
Q Consensus       169 ~  169 (522)
                      .
T Consensus       293 ~  293 (336)
T 1p5q_A          293 E  293 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.85  E-value=7.4e-08  Score=83.78  Aligned_cols=135  Identities=10%  Similarity=0.012  Sum_probs=116.9

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                      ...+|...+.+....+.          +++++..++.++..+|++..+|..++.+....   +++++++..++++++.+|
T Consensus        12 ~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           12 RAEELKTQANDYFKAKD----------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCc
Confidence            34678888888888777          79999999999999999999999999999998   999999999999999999


Q ss_pred             CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc
Q psy13451        138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT  216 (522)
Q Consensus       138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~  216 (522)
                      .+..+|...+.+....+. +++++++++++++.+|.+..+|.+...+...+          ..+.++++++.+.++...
T Consensus        79 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           79 KYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIV----------KQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHcccchHHH
Confidence            999999999999999998 79999999999999999999996655553222          127888888887776543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=1e-08  Score=85.58  Aligned_cols=120  Identities=8%  Similarity=0.005  Sum_probs=109.4

Q ss_pred             hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451         98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA  177 (522)
Q Consensus        98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa  177 (522)
                      ..|.+..+|..++.+....   +++++++.+++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQK---GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHT---TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHH
Confidence            3577788999999999888   899999999999999999999999999999998887 799999999999999999999


Q ss_pred             hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                      |...+.+....            +.++++++++.+++..+|.+..+|.....++..
T Consensus        87 ~~~la~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           87 YTRKAAALEAM------------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHT------------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999887            789999999999999999999999887766543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=2.4e-08  Score=83.34  Aligned_cols=120  Identities=11%  Similarity=0.138  Sum_probs=111.3

Q ss_pred             CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      .|....+|..++.++...+.          +++++..++.++..+|++..+|..++.++...   +++++++.+++++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~   78 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGD----------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQ   78 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTC----------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT---TCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Confidence            57888999999999999887          69999999999999999999999999999888   899999999999999


Q ss_pred             hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      .+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus        79 ~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           79 LEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             hCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            999999999999999999988 79999999999999999999998887766543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=8.3e-08  Score=83.43  Aligned_cols=129  Identities=11%  Similarity=0.093  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT  105 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~  105 (522)
                      .+..........|++ ++|+..+.+++.++|++..+|..++.++...+.          +++++..++.++..+|++..+
T Consensus        15 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           15 ELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC----------YGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCcccHHH
Confidence            444555566677777 889999999999999999999999999999888          799999999999999999999


Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH--HHhcCCCCHHHHHHHHHHHH
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYV--TDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~--l~~~~~~~~~el~~~~~~i~  169 (522)
                      |...+.++...   +++++++..++++++.+|.+..+|.+.+.+  ....+. ++++++.+.+...
T Consensus        84 ~~~~a~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~  145 (166)
T 1a17_A           84 YYRRAASNMAL---GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHH
Confidence            99999999999   899999999999999999999999766555  433344 4666666655543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.83  E-value=4.3e-08  Score=104.36  Aligned_cols=141  Identities=9%  Similarity=-0.109  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      ...........|++ ++|++.+.+++.++|++..+|...+.++...+.          +++++..++++++.+|++..+|
T Consensus        26 ~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~   94 (568)
T 2vsy_A           26 WLMLADAELGMGDT-TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR----------HAEAAVLLQQASDAAPEHPGIA   94 (568)
T ss_dssp             HHHHHHHHHHHTCH-HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCHHHH
Confidence            33444455566766 889999999999999999999999999999988          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      ...+.++...   ++++++++.++++++.+|.+..+|...+.+....   +. ++++++.++++++.+|.+.++|+..+
T Consensus        95 ~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A           95 LWLGHALEDA---GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence            9999999999   9999999999999999999999999999999999   77 68999999999999999999987644

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.83  E-value=2.2e-08  Score=87.68  Aligned_cols=117  Identities=14%  Similarity=0.074  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHhhccccHHHHH
Q psy13451         21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRN------------------IPDINSLWNYRKEVLLHMKATLAEEELH   82 (522)
Q Consensus        21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~------------------np~~~t~wn~R~~~l~~l~~~~~~~~~~   82 (522)
                      ++.-..+.+........|.| ++|+..+.++|.+                  +|....+|..++.++..++.        
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------   78 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------   78 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------
Confidence            44444556667777788888 8899999999999                  77778888888888888877        


Q ss_pred             HHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc-chhhHHHHHHH
Q psy13451         83 ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF-HCWDYRRYVTD  151 (522)
Q Consensus        83 ~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~-~aW~~R~~~l~  151 (522)
                        +++++..++.+|..+|.+..+|+.++.++..+   +++++++..++++++++|.|. .++...+.+..
T Consensus        79 --~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           79 --LHEAEETSSEVLKREETNEKALFRRAKARIAA---WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence              68888888888888888888888888888888   888888888888888888877 44444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.82  E-value=2.5e-08  Score=83.03  Aligned_cols=96  Identities=11%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|++ ++|+..+.+++.++|++..+|..++.++...+.          +++++..++++++.+|.+..+|...+
T Consensus        24 g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           24 GLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEK----------DGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3344445554 566666666666666666666666666666665          56666666666666666666666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNF  140 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~  140 (522)
                      .++...   +++++++..++++++.+|.+.
T Consensus        93 ~~~~~~---g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           93 VSHTNE---HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHC------
T ss_pred             HHHHHc---CCHHHHHHHHHHHHHhCcCCC
Confidence            666666   666666666666666666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.81  E-value=1.1e-07  Score=86.62  Aligned_cols=131  Identities=11%  Similarity=-0.012  Sum_probs=117.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      +.........|++ ++|+..+.+++  +| +..+|+.++.++...+.          +++++..++.++..+|++..+|.
T Consensus        10 ~~~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~   75 (213)
T 1hh8_A           10 WNEGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILKN----------MTEAEKAFTRSINRDKHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCccchHHHH
Confidence            3445555667777 78999999995  44 67899999999999988          79999999999999999999999


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc----------------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNF----------------HCWDYRRYVTDRHKVAPLKELNYSTEKIEAN  171 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~----------------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~  171 (522)
                      .++.++...   +++++++..++++++.+|.+.                .+|..++.+....+. +++++++++++++.+
T Consensus        76 ~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           76 QRGMLYYQT---EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHc---ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHcC
Confidence            999999999   999999999999999999888                999999999999998 799999999999999


Q ss_pred             CCcch
Q psy13451        172 FSNYS  176 (522)
Q Consensus       172 ~~n~s  176 (522)
                      |.+..
T Consensus       152 p~~~~  156 (213)
T 1hh8_A          152 SEPRH  156 (213)
T ss_dssp             CSGGG
T ss_pred             ccccc
Confidence            98743

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=4.2e-08  Score=81.23  Aligned_cols=122  Identities=8%  Similarity=0.072  Sum_probs=112.2

Q ss_pred             HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      ..+|....+|...+.+....+.          +++++..++.++..+|++..+|..++.+....   +++++++.+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~   72 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVEN----------FEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERA   72 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---hchHHHHHHHHHH
Confidence            3456778899999999988887          79999999999999999999999999999998   9999999999999


Q ss_pred             HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      ++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+...+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           73 ICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            99999999999999999999988 79999999999999999999999988877665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=1.4e-08  Score=84.19  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=111.0

Q ss_pred             hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451         98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA  177 (522)
Q Consensus        98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa  177 (522)
                      .+|+...+|...+.+....   +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKV---ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchhhhHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHH
Confidence            3456677888888888887   899999999999999999999999999999999888 799999999999999999999


Q ss_pred             hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451        178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~  236 (522)
                      |...+.+....            +.+++++.++.+++..+|++..+|.....+....++
T Consensus        83 ~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           83 YGRMGLALSSL------------NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh------------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            99999998887            789999999999999999999999888877765543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.79  E-value=5e-08  Score=89.07  Aligned_cols=135  Identities=7%  Similarity=-0.059  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451         61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF  140 (522)
Q Consensus        61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~  140 (522)
                      .++.++.++...+.          +++++..++.++  +| +..+|..++.+....   +++++++..++++++.+|.+.
T Consensus         8 ~~~~~g~~~~~~~~----------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~   71 (213)
T 1hh8_A            8 SLWNEGVLAADKKD----------WKGALDAFSAVQ--DP-HSRICFNIGCMYTIL---KNMTEAEKAFTRSINRDKHLA   71 (213)
T ss_dssp             HHHHHHHHHHHTTC----------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCC----------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCccch
Confidence            45667777777776          789999999886  33 778999999999998   999999999999999999999


Q ss_pred             chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc----------------hHhhHHHHHhchhCCCCCCCCccchhHHH
Q psy13451        141 HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY----------------SAWHYRSKLLPLLYPDPNNHLPIEQDKYV  204 (522)
Q Consensus       141 ~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~----------------saW~~r~~ll~~l~~~~~~~~~~~~~~~~  204 (522)
                      .+|..++.+....+. +++++++++++++.+|.|.                .+|.+++.+....            +.++
T Consensus        72 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~  138 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK------------EEWK  138 (213)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT------------TCHH
T ss_pred             HHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc------------cCHH
Confidence            999999999999998 7999999999999998887                9999999999888            7899


Q ss_pred             HHHHHHHHHHhcCCCCcchh
Q psy13451        205 NEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       205 ~el~~~~~ai~~~p~~~s~W  224 (522)
                      ++++++.+++..+|++....
T Consensus       139 ~A~~~~~~al~~~p~~~~~~  158 (213)
T 1hh8_A          139 KAEEQLALATSMKSEPRHSK  158 (213)
T ss_dssp             HHHHHHHHHHTTCCSGGGGH
T ss_pred             HHHHHHHHHHHcCcccccch
Confidence            99999999999999886543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.79  E-value=2.2e-08  Score=84.49  Aligned_cols=119  Identities=9%  Similarity=-0.026  Sum_probs=106.5

Q ss_pred             HhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451         97 LAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS  176 (522)
Q Consensus        97 ~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s  176 (522)
                      ..+|.+..+|...+.+....   +++++++..+.++++.+|.+..+|..++.+....+. +++++.+++++++.+|.+..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred             CCccccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHH
Confidence            35788899999999999998   999999999999999999999999999999999988 79999999999999999999


Q ss_pred             HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC-----CcchhhHHHHHh
Q psy13451        177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK-----DQSAWFYQRWLL  231 (522)
Q Consensus       177 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~-----~~s~W~y~~~ll  231 (522)
                      +|...+.+...+            +.++++++++.+++..+|+     +..+|...+.+.
T Consensus        79 ~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           79 AHFFLGQCQLEM------------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            999999999888            7899999999999999999     666666655544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.79  E-value=3.2e-08  Score=102.42  Aligned_cols=119  Identities=10%  Similarity=-0.005  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhhccccHHHHHHHHHH
Q psy13451         23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---------------NSLWNYRKEVLLHMKATLAEEELHELVDR   87 (522)
Q Consensus        23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---------------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~   87 (522)
                      ...............|+| ++|+..+.++|.++|++               ..+|+.++.++..++.          +++
T Consensus       267 ~a~~~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~  335 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE----------YTK  335 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHH
T ss_pred             HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC----------HHH
Confidence            334455556667777877 88999999999999999               7999999999999998          799


Q ss_pred             HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC
Q psy13451         88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV  155 (522)
Q Consensus        88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~  155 (522)
                      ++..++++|..+|++..+|+.|+.++..+   +++++++..++++++++|.|..+|..++.+...++.
T Consensus       336 A~~~~~~al~~~p~~~~a~~~~g~a~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          336 AVECCDKALGLDSANEKGLYRRGEAQLLM---NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999   999999999999999999999999999999988765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.79  E-value=5.2e-08  Score=82.13  Aligned_cols=107  Identities=9%  Similarity=-0.008  Sum_probs=100.4

Q ss_pred             HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      ..+|....+|...+.++...+.          +++++..+..++..+|++..+|..++.++...   +++++++..++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a   69 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRK----------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRA   69 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence            4678899999999999999888          79999999999999999999999999999999   9999999999999


Q ss_pred             HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451        133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS  173 (522)
Q Consensus       133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~  173 (522)
                      ++.+|.+..+|...+.+....+. ++++++++.++++.+|.
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChh
Confidence            99999999999999999999998 79999999999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.79  E-value=1.5e-08  Score=100.46  Aligned_cols=137  Identities=10%  Similarity=-0.006  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHHhhccccHHHHHHHHHH
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN-----------------SLWNYRKEVLLHMKATLAEEELHELVDR   87 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~-----------------t~wn~R~~~l~~l~~~~~~~~~~~~~~~   87 (522)
                      .............|++ ++|+..+.+++.++|++.                 .+|+.++.++..++.          +++
T Consensus       180 ~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~----------~~~  248 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR----------YDE  248 (338)
T ss_dssp             HHHHHHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC----------CHH
T ss_pred             HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC----------HHH
Confidence            3444556666677777 889999999999999987                 488999999988887          689


Q ss_pred             HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451         88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEK  167 (522)
Q Consensus        88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~  167 (522)
                      ++..++.+|..+|++..+|+.++.++..+   +++++++..+.++++++|.|..+|...+.+........+++.+.+.++
T Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~---g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          249 AIGHCNIVLTEEEKNPKALFRRGKAKAEL---GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCHHHHHHHHHHTTC---------------------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999888   889999999999999999999999888877665554456777788888


Q ss_pred             HHhcCCcc
Q psy13451        168 IEANFSNY  175 (522)
Q Consensus       168 i~~~~~n~  175 (522)
                      +..+|.+-
T Consensus       326 l~~~p~~~  333 (338)
T 2if4_A          326 FKGKDEGG  333 (338)
T ss_dssp             --------
T ss_pred             hCCCCCCC
Confidence            88888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.76  E-value=6.1e-09  Score=100.63  Aligned_cols=181  Identities=13%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA   98 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~   98 (522)
                      +..........|++ ++|+..+.+++.+        +|....+|...+.++...+.          +++++..++.++..
T Consensus        30 ~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~   98 (311)
T 3nf1_A           30 LHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK----------YKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHH
Confidence            33444455666766 8899999999995        78889999999999999887          67788888888776


Q ss_pred             --------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc--------CCCcchhhHHHHHHHhcCCCCHHHHH
Q psy13451         99 --------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD--------ERNFHCWDYRRYVTDRHKVAPLKELN  162 (522)
Q Consensus        99 --------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d--------~kn~~aW~~R~~~l~~~~~~~~~el~  162 (522)
                              +|....+|...+.+....   +++++++.+++++++..        |....+|...+.+....+. ++++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~  174 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEY  174 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence                    467788999999999888   89999999999999874        6777889999999999888 799999


Q ss_pred             HHHHHHHh--------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc---------CCCCcchhh
Q psy13451        163 YSTEKIEA--------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT---------EPKDQSAWF  225 (522)
Q Consensus       163 ~~~~~i~~--------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~---------~p~~~s~W~  225 (522)
                      +++++++.        +|....+|...+.+....            +.++++++++.+++..         +|.+...|.
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  242 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ------------GKFKQAETLYKEILTRAHEREFGSVDDENKPIWM  242 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence            99999998        788888899999988887            7899999999999964         455666666


Q ss_pred             HHHHHhccC
Q psy13451        226 YQRWLLGER  234 (522)
Q Consensus       226 y~~~ll~~~  234 (522)
                      ....+....
T Consensus       243 ~~~~~~~~~  251 (311)
T 3nf1_A          243 HAEEREECK  251 (311)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhc
Confidence            555554433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.76  E-value=3.5e-08  Score=79.44  Aligned_cols=108  Identities=10%  Similarity=0.153  Sum_probs=101.7

Q ss_pred             hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451         54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL  133 (522)
Q Consensus        54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l  133 (522)
                      ++|++..+|..++.+....+.          +++++..+++++..+|.+..+|..++.++...   +++++++.++++++
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~   67 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGN----------YTESIDLFEKAIQLDPEESKYWLMKGKALYNL---ERYEEAVDCYNYVI   67 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Confidence            479999999999999998887          79999999999999999999999999999998   89999999999999


Q ss_pred             hhcCC--CcchhhHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCcc
Q psy13451        134 ELDER--NFHCWDYRRYVTDRH-KVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       134 ~~d~k--n~~aW~~R~~~l~~~-~~~~~~el~~~~~~i~~~~~n~  175 (522)
                      +.+|.  +..+|...+.+.... +. ++++++++.+++..+|.+.
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYIEGK-EVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTCSSC-SHHHHHHHHHHGGGCCCCC
T ss_pred             HhCcccchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhcccCCC
Confidence            99999  999999999999999 88 7999999999999999764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.75  E-value=4.8e-08  Score=85.46  Aligned_cols=117  Identities=9%  Similarity=-0.079  Sum_probs=104.0

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh------------------CCCCccchhhHHHHHHHhcCC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA------------------QPKSYGTWFQRCYVLDHISRA  119 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------------------~pk~y~~W~~R~~il~~l~~~  119 (522)
                      ...+|..++..+...+.          +++++..+..++..                  +|....+|..++.++..+   
T Consensus        10 ~a~~~~~~G~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---   76 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKD----------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI---   76 (162)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            45678888988888887          79999999999998                  888889999999999999   


Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc-hHhhHHHHHhchh
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY-SAWHYRSKLLPLL  188 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~-saW~~r~~ll~~l  188 (522)
                      +++++++..|+++++++|.+..+|..++.+...++. ++++++++.++++.+|.|. .++.....+...+
T Consensus        77 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           77 GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 7999999999999999998 5565555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=1.5e-07  Score=76.36  Aligned_cols=114  Identities=10%  Similarity=0.003  Sum_probs=104.7

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                      ...+|...+.+....+.          +++++..++.++..+|.+..+|..++.+....   +++++++..++++++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~   69 (118)
T 1elw_A            3 QVNELKEKGNKALSVGN----------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKP   69 (118)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCc
Confidence            45678888888888777          79999999999999999999999999999999   999999999999999999


Q ss_pred             CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      .+..+|...+.+....+. ++++++++.++++.+|.+..+|...+.+.
T Consensus        70 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           70 DWGKGYSRKAAALEFLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999988 79999999999999999999998776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.73  E-value=1.2e-08  Score=106.32  Aligned_cols=131  Identities=10%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             hcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHH
Q psy13451         36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH  115 (522)
Q Consensus        36 ~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~  115 (522)
                      ..|++ ++|++.+++++.++|++..+|+.++.++..++.          +++++..++++++.+|++..+|+.++.++..
T Consensus        18 ~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1           18 KAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC----------YGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34445 889999999999999999999999999999988          7999999999999999999999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH--HHhcCCCCHHHHHHHH-----------HHHHhcCCcchHhhHH
Q psy13451        116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYV--TDRHKVAPLKELNYST-----------EKIEANFSNYSAWHYR  181 (522)
Q Consensus       116 l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~--l~~~~~~~~~el~~~~-----------~~i~~~~~n~saW~~r  181 (522)
                      +   ++++++++.++++++.+|.+..+|...+.+  ....+. ++++++.++           ++++.+|+...+++..
T Consensus        87 ~---g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  161 (477)
T 1wao_1           87 L---GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED  161 (477)
T ss_dssp             H---TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred             c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence            9   999999999999999999999999999888  544454 567788888           8888888877776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.73  E-value=3.1e-09  Score=110.73  Aligned_cols=126  Identities=10%  Similarity=0.011  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      +++++..++++++.+|++..+|+.++.++...   ++++++++.++++++++|.+..+|..++.+...++. ++++++++
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~   97 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDY   97 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            79999999999999999999999999999999   999999999999999999999999999999999998 79999999


Q ss_pred             HHHHHhcCCcchHhhHHHHH--hchhCCCCCCCCccchhHHHHHHHHHH-----------HHHhcCCCCcchhhH
Q psy13451        165 TEKIEANFSNYSAWHYRSKL--LPLLYPDPNNHLPIEQDKYVNEFSMVE-----------SAVFTEPKDQSAWFY  226 (522)
Q Consensus       165 ~~~i~~~~~n~saW~~r~~l--l~~l~~~~~~~~~~~~~~~~~el~~~~-----------~ai~~~p~~~s~W~y  226 (522)
                      +++++.+|.+..+|.+.+.+  +...            +.++++++.+.           +++..+|....++.-
T Consensus        98 ~~al~~~p~~~~~~~~l~~~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           98 ETVVKVKPHDKDAKMKYQECNKIVKQ------------KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             HHHHHHSTTCTTHHHHHHHHHHHHHH------------HHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHH------------HHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence            99999999999999998887  4444            78899999999           999999988777643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=7.5e-08  Score=81.96  Aligned_cols=121  Identities=18%  Similarity=0.048  Sum_probs=109.8

Q ss_pred             HhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451         97 LAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS  173 (522)
Q Consensus        97 ~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~  173 (522)
                      ..+|+...+|..++.+....   +++++++.+++++++.+|.+   ..+|..++.+....+. +++++++++++++.+|.
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKC---GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSC
T ss_pred             ccchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCcc
Confidence            35678889999999988887   99999999999999999998   8999999999999988 79999999999999999


Q ss_pred             cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                      +..+|..++.++..+            +.+++++.++.+++..+|++..+|.....+..+
T Consensus        98 ~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           98 DVKALYRRSQALEKL------------GRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             CHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999888            789999999999999999999999776665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.71  E-value=5.1e-08  Score=81.83  Aligned_cols=105  Identities=6%  Similarity=0.028  Sum_probs=92.0

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      ++...+|...|.++...+.          +++++..++++|..+|++..+|+.++.++..+   ++++++++.+++++++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~----------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~---~~~~~A~~~~~~al~~   71 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKD----------FEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---KKFAECVQFCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---hhHHHHHHHHHHHHHh
Confidence            3556788888999888887          89999999999999999999999999999999   9999999999999999


Q ss_pred             cCCCcc-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451        136 DERNFH-------CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN  174 (522)
Q Consensus       136 d~kn~~-------aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n  174 (522)
                      +|.+..       ++...+.+...++. ++++++++.+++..+|..
T Consensus        72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           72 GRETRADYKLIAKAMSRAGNAFQKQND-LSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCCH
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCH
Confidence            998875       45556666677777 799999999999988853

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.71  E-value=2.8e-07  Score=83.36  Aligned_cols=120  Identities=14%  Similarity=0.016  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHhhccccHHHHHHH
Q psy13451         21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN----------------SLWNYRKEVLLHMKATLAEEELHEL   84 (522)
Q Consensus        21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~----------------t~wn~R~~~l~~l~~~~~~~~~~~~   84 (522)
                      .+.-..+..........|++ ++|+..+.+++.+.|++.                .+|..++.++..++.          
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------  103 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD----------  103 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence            33344555566667777887 889999999999999987                888888888888877          


Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcC
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHK  154 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~  154 (522)
                      +++++..++.++..+|++..+|..++.++..+   +++++++..+.++++++|.+..+|...+.+...++
T Consensus       104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYF---GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            78888999999999999988999998888888   88888999999999999988888877777766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1.4e-07  Score=80.29  Aligned_cols=120  Identities=8%  Similarity=-0.075  Sum_probs=110.7

Q ss_pred             HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---ccchhhHHHHHHHhcCCCChHHHHHHH
Q psy13451         53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YGTWFQRCYVLDHISRAPNYEKELELC  129 (522)
Q Consensus        53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~~W~~R~~il~~l~~~~~~~~el~~~  129 (522)
                      ..+|+...+|..++......+.          +++++..++.++..+|.+   ..+|..++.++...   +++++++..+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~   88 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGD----------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEA   88 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH---ccHHHHHHHH
Confidence            3578899999999999998887          799999999999999998   89999999999998   9999999999


Q ss_pred             HHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        130 NYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       130 ~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      +++++.+|.+..+|..++.+....+. ++++++++.++++.+|.+..+|.....+..
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           89 SKAIEKDGGDVKALYRRSQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHhhCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            99999999999999999999999998 799999999999999999999977666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.71  E-value=3.7e-08  Score=95.41  Aligned_cols=179  Identities=4%  Similarity=-0.096  Sum_probs=133.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHhCCCC-
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDI------NSLWNYRKEVLLHM-KATLAEEELHELVDRELKLTKDCLLAQPKS-  102 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~------~t~wn~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~-  102 (522)
                      .......|++ ++|+..+.+++.+.|+.      ..+|+..+.++... +.          +++++..+++++..+|+. 
T Consensus        84 g~~~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~----------~~~A~~~~~~Al~~~~~~~  152 (292)
T 1qqe_A           84 YKCFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD----------YAKAIDCYELAGEWYAQDQ  152 (292)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHHHHHhCC
Confidence            3344455666 88999999999998864      56888899999884 87          799999999999998865 


Q ss_pred             -----ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451        103 -----YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH-------CWDYRRYVTDRHKVAPLKELNYSTEKIEA  170 (522)
Q Consensus       103 -----y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-------aW~~R~~~l~~~~~~~~~el~~~~~~i~~  170 (522)
                           ..+|...+.++..+   +++++++..++++++.+|.+..       +|...+.+...++. +++++.+++++++.
T Consensus       153 ~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l  228 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALD---GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSE  228 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC
T ss_pred             ChHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence                 46788889999998   9999999999999999998865       46677888888887 79999999999999


Q ss_pred             cCCcchHhhHHHH--HhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        171 NFSNYSAWHYRSK--LLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       171 ~~~n~saW~~r~~--ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                      +|+...+...+..  +.... ..      ...+.+++++..+++++.++|.+..+|.-.+..+
T Consensus       229 ~p~~~~~~~~~~l~~l~~~~-~~------~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          229 DPNFADSRESNFLKSLIDAV-NE------GDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             ---------HHHHHHHHHHH-HT------TCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHH-Hc------CCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            9998877654332  11111 10      0125789999999999999998766665544444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.70  E-value=1.3e-07  Score=91.16  Aligned_cols=147  Identities=8%  Similarity=-0.030  Sum_probs=122.3

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      |....+|..++.++...+.          +++++..++.++..+|.+..+|..++.++..+   +++++++..++++++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRK----------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALEL   67 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTS
T ss_pred             ChhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHh
Confidence            6778899999999999888          79999999999999999999999999999999   9999999999999999


Q ss_pred             cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451        136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~  215 (522)
                      +|.+..+|..++.++..++. ++++++.+.++++.+|.+..++....+...               ...+...+......
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  131 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSAL---------------RIAKKKRWNSIEER  131 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---------------HHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence            99999999999999999998 799999999999999977433321111111               12233334444556


Q ss_pred             cCCCCcchhhHHHHHh
Q psy13451        216 TEPKDQSAWFYQRWLL  231 (522)
Q Consensus       216 ~~p~~~s~W~y~~~ll  231 (522)
                      ..|.+.....|.+.++
T Consensus       132 ~~~~~~~i~~~l~~l~  147 (281)
T 2c2l_A          132 RIHQESELHSYLTRLI  147 (281)
T ss_dssp             CCCCCCHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHH
Confidence            7899999998888876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.69  E-value=5.2e-08  Score=81.81  Aligned_cols=102  Identities=9%  Similarity=-0.008  Sum_probs=88.2

Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH-----
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA-----  177 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa-----  177 (522)
                      ..+|...|.+..+.   ++++++++.++++++++|.+..+|..++.+...++. +++++++++++|+++|.+..+     
T Consensus         8 A~a~~~lG~~~~~~---~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQ---KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHH
Confidence            34567778888888   999999999999999999999999999999999998 799999999999999988764     


Q ss_pred             --hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC
Q psy13451        178 --WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD  220 (522)
Q Consensus       178 --W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~  220 (522)
                        |..++.+...+            +.++++++++.+++..+|+.
T Consensus        84 ~~~~~lg~~~~~~------------~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           84 KAMSRAGNAFQKQ------------NDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCcCH
Confidence              44455555555            78999999999999998864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=2.5e-07  Score=88.17  Aligned_cols=167  Identities=11%  Similarity=-0.006  Sum_probs=122.9

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLH----MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR  109 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R  109 (522)
                      ....|++ ++|+..+.+++.  |++..+|...+.++..    .+.          +++++..+++++..+  +..+|+..
T Consensus        16 ~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~l   80 (273)
T 1ouv_A           16 SYKEKDF-TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKN----------LKKAASFYAKACDLN--YSNGCHLL   80 (273)
T ss_dssp             HHHTTCH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCC----------HHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHhCCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCC----------HHHHHHHHHHHHHCC--CHHHHHHH
Confidence            3344444 778888888887  7777888888888777    555          578888888888775  77888888


Q ss_pred             HHHHHH----hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451        110 CYVLDH----ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYR  181 (522)
Q Consensus       110 ~~il~~----l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r  181 (522)
                      +.+...    .   +++++++.+++++++.+  +..+|...+.+...    .+. +++++++++++++.+  +..++.+.
T Consensus        81 g~~~~~g~~~~---~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~l  152 (273)
T 1ouv_A           81 GNLYYSGQGVS---QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD-FKKAVEYFTKACDLN--DGDGCTIL  152 (273)
T ss_dssp             HHHHHHTSSSC---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHhCCCCcc---cCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC-HHHHHHHHHHHHhcC--cHHHHHHH
Confidence            888877    5   77888888888888774  77788888888877    555 688888888888876  56777777


Q ss_pred             HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                      +.++..-..        ..+.++++++++++++..  ++..++.....++..
T Consensus       153 g~~~~~~~~--------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          153 GSLYDAGRG--------TPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHTSS--------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC--------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            777665210        015678888888888876  356677777777665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=3.6e-07  Score=73.99  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      ...........|++ ++|+..+.+++..+|++..+|..++.+....+.          +++++..++.++..+|++..+|
T Consensus         7 ~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~   75 (118)
T 1elw_A            7 LKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD----------YQKAYEDGCKTVDLKPDWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhCcccHHHH
Confidence            33444555566766 889999999999999999999999999999887          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT  150 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l  150 (522)
                      ...+.++...   +++++++..++++++.+|.+..+|...+-+.
T Consensus        76 ~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           76 SRKAAALEFL---NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999998   8999999999999999999998887766553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.67  E-value=5.3e-08  Score=84.19  Aligned_cols=101  Identities=7%  Similarity=-0.078  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC--------ChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451         79 EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP--------NYEKELELCNYYLELDERNFHCWDYRRYVT  150 (522)
Q Consensus        79 ~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~--------~~~~el~~~~~~l~~d~kn~~aW~~R~~~l  150 (522)
                      .+....+++++..++.+++.+|++..+|...+-++..+ ...        .+++++..+++++++||++..+|+..+-++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            34456689999999999999999999999999999987 211        257999999999999999999999999999


Q ss_pred             HhcCC----------CCHHHHHHHHHHHHhcCCcchHhhH
Q psy13451        151 DRHKV----------APLKELNYSTEKIEANFSNYSAWHY  180 (522)
Q Consensus       151 ~~~~~----------~~~~el~~~~~~i~~~~~n~saW~~  180 (522)
                      ..++.          .++++++++.+++++||.|...|..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            87751          2689999999999999998655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.67  E-value=2.9e-07  Score=73.93  Aligned_cols=109  Identities=12%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cc
Q psy13451         98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NY  175 (522)
Q Consensus        98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~  175 (522)
                      .+|.+..+|...+.+....   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.  +.
T Consensus         1 l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDA---GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSS---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCCCcHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccchH
Confidence            3799999999999999888   899999999999999999999999999999999988 79999999999999999  99


Q ss_pred             hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                      .+|...+.+...+.           +.++++++++.+++..+|.+.
T Consensus        77 ~~~~~l~~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           77 DVWAAKADALRYIE-----------GKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTCS-----------SCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHhhcccCCC
Confidence            99999998877650           246889999999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.67  E-value=1.1e-08  Score=109.48  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhh-hhhcccccCCCCCcEEEecCCCccc-----ccC-cCCCCcccEEEecCCCC
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKY-KIETFIQTNPRANQITNLSSLQLTS-----IHH-MHCFAHCKQVDLSNNPL  399 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~-~~~~~l~~l~~~~~~L~ls~n~l~~-----l~~-~~~l~~L~~L~Ls~n~l  399 (522)
                      +.....+++|+.|++.++...+.....+ .....++.+    +.|++++|.++.     ++. +..+++|+.|++++|.+
T Consensus       157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL----EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC----CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc----cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            3444577888888887776433211100 011112222    478888887763     233 45677888888888877


Q ss_pred             CCcccccCCCCCCccEEEcCCCCCC-C----CCCCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-
Q psy13451        400 TNNCLRHLTPLVACESLKLTHCSLS-S----LHVFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-  468 (522)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~l~~n~l~-~----~~~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-  468 (522)
                      .+ +|..+..+++|+.|+++.+... .    ...+..+++|+.|+++++....++     +++|+.|++++|.+++... 
T Consensus       233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~  311 (592)
T 3ogk_B          233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC  311 (592)
T ss_dssp             GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH
T ss_pred             HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHH
Confidence            63 5566666777777777643211 1    113455556666666554333322     3456666666666443211 


Q ss_pred             --CCCCCCCCEEEcc
Q psy13451        469 --FPHLPSLESLDVS  481 (522)
Q Consensus       469 --l~~~~~L~~L~Ls  481 (522)
                        +..+++|+.|+++
T Consensus       312 ~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          312 TLIQKCPNLEVLETR  326 (592)
T ss_dssp             HHHTTCTTCCEEEEE
T ss_pred             HHHHhCcCCCEEecc
Confidence              2344444444444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.66  E-value=3.6e-08  Score=89.37  Aligned_cols=128  Identities=8%  Similarity=-0.036  Sum_probs=114.0

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc----------------cchhhHH
Q psy13451         47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY----------------GTWFQRC  110 (522)
Q Consensus        47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y----------------~~W~~R~  110 (522)
                      .++......++...+|..++.++...+.          +++++..+..++...|++.                .+|..++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           26 IYDYTDEEKVQSAFDIKEEGNEFFKKNE----------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            3333344555667788889998888887          7999999999999999988                8999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      .++...   +++++++..++++++.+|.+..+|..++.+...++. ++++++++.++++.+|.+..+|...+.+...+
T Consensus        96 ~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           96 TCYNKN---KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh---cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            999998   999999999999999999999999999999999998 79999999999999999999999888877766

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.65  E-value=1.2e-08  Score=101.38  Aligned_cols=145  Identities=8%  Similarity=0.027  Sum_probs=94.3

Q ss_pred             HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc-----------------cchhhHHHHHH
Q psy13451         52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-----------------GTWFQRCYVLD  114 (522)
Q Consensus        52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-----------------~~W~~R~~il~  114 (522)
                      +...|+...+|..++..+...+.          +++++..+..++..+|.+.                 .+|+.++.++.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~  241 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSC----------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667888889988888777          6999999999999999987                 49999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCC
Q psy13451        115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNN  194 (522)
Q Consensus       115 ~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~  194 (522)
                      ++   +++++++..|+++++.+|.|..+|..++.++..++. ++++++++.++++.+|.|..+|.....+....      
T Consensus       242 ~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~------  311 (338)
T 2if4_A          242 KL---KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQE------  311 (338)
T ss_dssp             TT---TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC-------------------------
T ss_pred             Hc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------
Confidence            98   899999999999999999999999999999999998 79999999999999999999998877664433      


Q ss_pred             CCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        195 HLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       195 ~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                           .+..+++-..+.+++..+|++.
T Consensus       312 -----~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          312 -----KALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ---------------------------
T ss_pred             -----HHHHHHHHHHHHHhhCCCCCCC
Confidence                 1456677788899999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.64  E-value=1.3e-07  Score=95.85  Aligned_cols=137  Identities=16%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.+.+.. .++.++.  |.++++|+.+++..| ++.....+|.+ .+|+.+.+ .+.++.++  .|..+++|+.+.+.+|
T Consensus       206 ~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          206 EEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             SEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             CEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence            3455543 2555544  566666666666654 33333445555 56666666 33455543  5777888888888777


Q ss_pred             CCC-----ccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451        444 APN-----IIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       444 ~l~-----~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  510 (522)
                      .+.     .++      +.+|+.+.+. +.++.++.  |.++.+|+.+.|..| ++.+...+|.++ +|+.+.+.+|.+.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            654     222      5677888887 44776664  777888888888554 777777788888 8888888887654


Q ss_pred             c
Q psy13451        511 A  511 (522)
Q Consensus       511 ~  511 (522)
                      .
T Consensus       359 ~  359 (401)
T 4fdw_A          359 Q  359 (401)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.63  E-value=4.8e-09  Score=112.24  Aligned_cols=127  Identities=16%  Similarity=0.101  Sum_probs=90.5

Q ss_pred             CCCcccEEEecCCCCCCcccccCC-CCCCccEEEcC--C----CCCCCCCC-------CCCCCCcCEEEccCCCCCccc-
Q psy13451        385 CFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLT--H----CSLSSLHV-------FPHLPSLESLDVSHNAPNIIL-  449 (522)
Q Consensus       385 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~-------~~~l~~L~~L~ls~N~l~~~~-  449 (522)
                      .+++|+.|.+++|.+++..+..+. .+++|+.|+++  +    +.++..|.       +..+++|+.|++++ .++... 
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            367788888888887765554444 47888898888  3    56664431       45677899999977 554321 


Q ss_pred             ------cCcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCChh-hhcCCCCccEEEecCCCCccc
Q psy13451        450 ------CVYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIEDS-VFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       450 ------~~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~  512 (522)
                            +++|+.|++++|.+++...   ...+++|+.|+|++|.+++.... ....+++|+.|++++|+++..
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  521 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG  521 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence                  5789999999998876432   25678999999999998654432 445588999999999988543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=5.5e-07  Score=73.61  Aligned_cols=119  Identities=15%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             hCCCc-hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         54 NIPDI-NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        54 ~np~~-~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      .+|+. ..+|...+.+....+.          +++++..++.++..+|.+..+|...+.++...   +++++++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~   69 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKA   69 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence            45655 7889999998888877          79999999999999999999999999999988   8999999999999


Q ss_pred             HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      ++.+|.+..+|...+.+....+. +++++++++++++.+|.+..++...+.+..
T Consensus        70 ~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           70 LELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999999999999999988 799999999999999999999988776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.61  E-value=2.1e-07  Score=88.17  Aligned_cols=167  Identities=13%  Similarity=0.144  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHh-------C-CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh--------CCCCccc
Q psy13451         42 DEALSLTSEVLRN-------I-PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA--------QPKSYGT  105 (522)
Q Consensus        42 ~eal~~~~~~l~~-------n-p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pk~y~~  105 (522)
                      ++|+..+.+++.+       + |....+|...+.++...+.          +++++..++.++..        +|....+
T Consensus        18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (283)
T 3edt_B           18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK----------YKEAAHLLNDALAIREKTLGKDHPAVAAT   87 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            4556666666653       3 7888999999999999888          68888888888876        4777889


Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh-------
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA-------  170 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~-------  170 (522)
                      |...+.+....   ++++++++.+.++++.        +|....+|...+.+....+. +++++++++++++.       
T Consensus        88 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~  163 (283)
T 3edt_B           88 LNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGP  163 (283)
T ss_dssp             HHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCC
Confidence            99999999888   9999999999999998        68889999999999999998 79999999999998       


Q ss_pred             -cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc---------CCCCcchhhHHHHHhccC
Q psy13451        171 -NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT---------EPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       171 -~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~---------~p~~~s~W~y~~~ll~~~  234 (522)
                       +|.+..+|...+.+....            +.++++++++.+++..         +|.....|..........
T Consensus       164 ~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (283)
T 3edt_B          164 DDPNVAKTKNNLASCYLKQ------------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK  225 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence             888889999999998888            7899999999999987         667777777666554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=7.6e-07  Score=84.73  Aligned_cols=164  Identities=8%  Similarity=-0.010  Sum_probs=137.3

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451         37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLH----MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV  112 (522)
Q Consensus        37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i  112 (522)
                      .+++ ++|+..+.+++..+  +..+|...+.++..    .+.          +++++..+++++..+  +..+|...+.+
T Consensus        55 ~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~lg~~  119 (273)
T 1ouv_A           55 EKNL-KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN----------TNKALQYYSKACDLK--YAEGCASLGGI  119 (273)
T ss_dssp             CCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC----------HHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             CCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC----------HHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence            3444 88999999999986  88999999999988    665          689999999999874  88999999999


Q ss_pred             HHH----hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451        113 LDH----ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKL  184 (522)
Q Consensus       113 l~~----l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l  184 (522)
                      +..    .   +++++++.+++++++.+  +..++...+.+...    .+. +++++++++++++.+  +..++...+.+
T Consensus       120 ~~~~~~~~---~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~  191 (273)
T 1ouv_A          120 YHDGKVVT---RDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNM  191 (273)
T ss_dssp             HHHCSSSC---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHcCCCcc---cCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            988    6   89999999999999987  67889999999887    555 699999999999874  57888888888


Q ss_pred             hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                      ...-..        ..+.++++++++++++..+|  ..++.....++..
T Consensus       192 ~~~g~~--------~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~  230 (273)
T 1ouv_A          192 YHHGEG--------ATKNFKEALARYSKACELEN--GGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHTCS--------SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred             HHcCCC--------CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence            876210        11679999999999999977  6788888888766

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.59  E-value=1.2e-07  Score=95.88  Aligned_cols=191  Identities=7%  Similarity=-0.069  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451         23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN----SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA   98 (522)
Q Consensus        23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~----t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~   98 (522)
                      ....+..........|.+ ++|+..+.+++.++|++.    .+|...+.++...+.          +++++..++.++..
T Consensus        47 ~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~  115 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD----------YNKAMQYHKHDLTL  115 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHH
Confidence            344555556666777877 789999999999999986    589999999999887          68888888888887


Q ss_pred             ------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh------cCCCcchhhHHHHHHHhcCCC----------
Q psy13451         99 ------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL------DERNFHCWDYRRYVTDRHKVA----------  156 (522)
Q Consensus        99 ------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~~~~~----------  156 (522)
                            .|....+|...+.++...   +++++++..++++++.      ++....+|...+.+....+..          
T Consensus       116 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  192 (411)
T 4a1s_A          116 AKSMNDRLGEAKSSGNLGNTLKVM---GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG  192 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHccCchHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence                  688889999999999998   8999999999999998      667777999999998887751          


Q ss_pred             ------CHHHHHHHHHHHHhc------CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc--
Q psy13451        157 ------PLKELNYSTEKIEAN------FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS--  222 (522)
Q Consensus       157 ------~~~el~~~~~~i~~~------~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s--  222 (522)
                            ++++++++.++++..      +....+|...+.+....            +.++++++++.+++...|.+..  
T Consensus       193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~  260 (411)
T 4a1s_A          193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL------------GDFQAAIEHHQERLRIAREFGDRA  260 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHhcCCcH
Confidence                  478888888887753      33345888888888777            7899999999999999988766  


Q ss_pred             ----hhhHHHHHhccCCCccc
Q psy13451        223 ----AWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       223 ----~W~y~~~ll~~~~~~~~  239 (522)
                          +|.....++...++...
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHH
Confidence                88888888877776554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=2e-07  Score=89.85  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=133.2

Q ss_pred             HHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhC------
Q psy13451         34 KRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQ------   99 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------   99 (522)
                      ....|++ ++|+..+.+++.+        +|....+|+..+.++...+.          +++++..++.++...      
T Consensus        79 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           79 YRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHhcCC
Confidence            3444555 8899999999988        57788999999999998887          678888888888763      


Q ss_pred             --CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451        100 --PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus       100 --pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~  169 (522)
                        |....+|...+.++...   +++++++++++++++.        +|....+|...+.+....+. +++++++++++++
T Consensus       148 ~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~  223 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQ---GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILT  223 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence              66778899999999888   8999999999999998        78888899999999999988 6999999999997


Q ss_pred             h-------------------------------------------------cCCcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451        170 A-------------------------------------------------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQ  200 (522)
Q Consensus       170 ~-------------------------------------------------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~  200 (522)
                      .                                                 +|.+..+|...+.+....            
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~------------  291 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ------------  291 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC------------
Confidence            4                                                 455566777777777766            


Q ss_pred             hHHHHHHHHHHHHHhcCCC
Q psy13451        201 DKYVNEFSMVESAVFTEPK  219 (522)
Q Consensus       201 ~~~~~el~~~~~ai~~~p~  219 (522)
                      +.++++++++.+++.+.|+
T Consensus       292 g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          292 GKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHhhc
Confidence            7899999999999998875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.58  E-value=1.7e-07  Score=89.33  Aligned_cols=180  Identities=9%  Similarity=0.008  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHhhccc---------------------
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYR-------KEVLLHMKATL---------------------   76 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R-------~~~l~~l~~~~---------------------   76 (522)
                      +.+++..+.. ..++ ..+|+..+++++.++|+...+|..|       +.+|..+.+..                     
T Consensus         8 ~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~   85 (282)
T 4f3v_A            8 ASLFESAVSM-LPMS-EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI   85 (282)
T ss_dssp             HHHHHHHHHH-TTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred             HHHHHHHhcc-cCCC-HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence            3455555543 2333 3779999999999999999999999       88888764420                     


Q ss_pred             c--------------HHHH----------HHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         77 A--------------EEEL----------HELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        77 ~--------------~~~~----------~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      .              ++++          ..-++++.+.++.++..+|... +.+-++-+..+.   ++|.+.+..++++
T Consensus        86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~---~r~~dA~~~l~~a  161 (282)
T 4f3v_A           86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA---ERWTDVIDQVKSA  161 (282)
T ss_dssp             ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT---TCHHHHHHHHTTG
T ss_pred             ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc---CCHHHHHHHHHHh
Confidence            0              0110          1237788888888888888888 888888877777   8999999999877


Q ss_pred             HhhcCCC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc--CC-cchHhhHHHHHhchhCCCCCCCCccchhHHHHH
Q psy13451        133 LELDERN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN--FS-NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNE  206 (522)
Q Consensus       133 l~~d~kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~--~~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~e  206 (522)
                      .... .+   ..++.+.+.++..++. ++++++++++++...  |. ...++.+++.++..+            ++.+++
T Consensus       162 ~~~~-d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l------------Gr~deA  227 (282)
T 4f3v_A          162 GKWP-DKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ------------GNESAA  227 (282)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH------------TCHHHH
T ss_pred             hccC-CcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc------------CCHHHH
Confidence            6643 33   2489999999999998 799999999999654  66 556999999999999            889999


Q ss_pred             HHHHHHHHhcCCCCcchhh
Q psy13451        207 FSMVESAVFTEPKDQSAWF  225 (522)
Q Consensus       207 l~~~~~ai~~~p~~~s~W~  225 (522)
                      ...+++++..+|+ ..+|.
T Consensus       228 ~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          228 VALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHhcCCc-HHHHH
Confidence            9999999999999 66663

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.57  E-value=3.8e-07  Score=74.59  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             CCCC-ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451         99 QPKS-YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA  177 (522)
Q Consensus        99 ~pk~-y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa  177 (522)
                      +|.. ..+|+..+.+....   ++++++++.++++++.+|.+..+|...+.+....+. +++++.+++++++.+|.+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred             CccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHH
Confidence            4555 67888888888888   899999999999999999999999999999999887 799999999999999999999


Q ss_pred             hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451        178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG  232 (522)
Q Consensus       178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~  232 (522)
                      |...+.+....            +.++++++++.+++..+|++..++..+..+..
T Consensus        80 ~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           80 WYNLGNAYYKQ------------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh------------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999988877            78999999999999999999998877666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.57  E-value=2.7e-08  Score=106.34  Aligned_cols=53  Identities=15%  Similarity=0.227  Sum_probs=28.0

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccEEEe
Q psy13451        451 VYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQVIL  504 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L  504 (522)
                      ++|+.|++++|.+++...   +..+++|+.|++++| +++.. ......+++|+.|++
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            556666666666543211   345566666666665 33221 112234666667666

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.56  E-value=4.1e-07  Score=91.34  Aligned_cols=180  Identities=9%  Similarity=-0.012  Sum_probs=145.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy13451         30 TIFEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY  103 (522)
Q Consensus        30 ~~~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y  103 (522)
                      ........|++ ++|+..+.+++.+      .+....+|+..+.+...++.          +++++..+.+++...++..
T Consensus       109 ~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~  177 (383)
T 3ulq_A          109 RGMYELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKEHE  177 (383)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCc
Confidence            34445566777 8899999999998      33466899999999999888          6899999999998765553


Q ss_pred             -------cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc------chhhHHHHHHHhcCCCCHHHHHHHHHHHH-
Q psy13451        104 -------GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF------HCWDYRRYVTDRHKVAPLKELNYSTEKIE-  169 (522)
Q Consensus       104 -------~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~------~aW~~R~~~l~~~~~~~~~el~~~~~~i~-  169 (522)
                             .+++..+.+...+   ++++++++.++++++..++.-      .++...+++....+. ++++++++.++++ 
T Consensus       178 ~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~  253 (383)
T 3ulq_A          178 AYNIRLLQCHSLFATNFLDL---KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAV  253 (383)
T ss_dssp             TTHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Confidence                   4788888888888   999999999999999877665      389999999999998 7999999999999 


Q ss_pred             ----hc-CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC-----CCCcchhhHHHHHhccCCC
Q psy13451        170 ----AN-FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE-----PKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       170 ----~~-~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~-----p~~~s~W~y~~~ll~~~~~  236 (522)
                          .+ |....++...+.+....            +.++++++++++++...     |.....+...+.+....+.
T Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          254 FEESNILPSLPQAYFLITQIHYKL------------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHhhccchhHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence                57 88888999999999888            78999999999999884     4333444444555544443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.54  E-value=1.6e-07  Score=94.24  Aligned_cols=120  Identities=16%  Similarity=0.072  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------hCCCchHHHHHHHHHHHHhhccccHHHHHHHH
Q psy13451         22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLR----------------NIPDINSLWNYRKEVLLHMKATLAEEELHELV   85 (522)
Q Consensus        22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~----------------~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~   85 (522)
                      +.-..+..........|++ ++|+..+.++|.                ++|....+|+.++.++..++.          +
T Consensus       221 ~~a~~~~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~  289 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD----------W  289 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC----------H
T ss_pred             HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC----------H
Confidence            3334455556667777887 889999999999                778888888888888888877          6


Q ss_pred             HHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC
Q psy13451         86 DRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV  155 (522)
Q Consensus        86 ~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~  155 (522)
                      ++++..++++|+.+|++..+|+.++.++..+   ++++++++.++++++++|.+..+|.....+...++.
T Consensus       290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGL---KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888   888888888888888888888888887777766543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.53  E-value=5.1e-07  Score=85.41  Aligned_cols=128  Identities=13%  Similarity=0.020  Sum_probs=110.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA-   98 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-   98 (522)
                      ..........|++ ++|+..+.+++.+        +|....+|+..+.++...+.          +++++..+.+++.. 
T Consensus        47 ~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~  115 (283)
T 3edt_B           47 NILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIR  115 (283)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHH
Confidence            3444445556666 8899999999988        57888999999999999887          68888888888877 


Q ss_pred             -------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHH
Q psy13451         99 -------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNY  163 (522)
Q Consensus        99 -------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~  163 (522)
                             +|....+|...+.+....   +++++++..++++++.        +|....+|...+.+....+. +++++++
T Consensus       116 ~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~  191 (283)
T 3edt_B          116 EKVLGKFHPDVAKQLNNLALLCQNQ---GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETL  191 (283)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence                   588889999999999998   9999999999999999        88888999999999999998 7999999


Q ss_pred             HHHHHHh
Q psy13451        164 STEKIEA  170 (522)
Q Consensus       164 ~~~~i~~  170 (522)
                      ++++++.
T Consensus       192 ~~~~l~~  198 (283)
T 3edt_B          192 YKEILTR  198 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.53  E-value=2.4e-07  Score=92.97  Aligned_cols=187  Identities=9%  Similarity=0.005  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh----
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA----   98 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----   98 (522)
                      +..........|.+ ++|+..+++++.++|++    ..+|...+.+....+.          +++++..++.++..    
T Consensus        12 l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~   80 (406)
T 3sf4_A           12 LALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD----------YAKALEYHHHDLTLARTI   80 (406)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHhc
Confidence            33445556667777 88999999999999998    4688899999998887          67888888888776    


Q ss_pred             --CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCC--------------
Q psy13451         99 --QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVA--------------  156 (522)
Q Consensus        99 --~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~--------------  156 (522)
                        .|....+|...+.+....   +++++++..++++++..|+...      +|...+.+....+..              
T Consensus        81 ~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVL---GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred             cccHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence              455678899999999988   8999999999999999887654      888888888877651              


Q ss_pred             -----CHHHHHHHHHHHHh------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc---
Q psy13451        157 -----PLKELNYSTEKIEA------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS---  222 (522)
Q Consensus       157 -----~~~el~~~~~~i~~------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s---  222 (522)
                           ++++++++.++++.      .+....+|...+.+....            +.++++++++.+++...|....   
T Consensus       158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~  225 (406)
T 3sf4_A          158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL------------GNFRDAVIAHEQRLLIAKEFGDKAA  225 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHHHHhcCCcHH
Confidence                 47888888888876      444556788888888877            7899999999999999888776   


Q ss_pred             ---hhhHHHHHhccCCCccc
Q psy13451        223 ---AWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       223 ---~W~y~~~ll~~~~~~~~  239 (522)
                         +|.....++...++...
T Consensus       226 ~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHH
Confidence               88888888877776554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.50  E-value=2e-06  Score=71.34  Aligned_cols=106  Identities=12%  Similarity=0.028  Sum_probs=72.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---cc
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDIN---SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YG  104 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~---t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~  104 (522)
                      .......|++ ++|+..+.+++..+|++.   .+|...+.+....+.          +++++..++.++..+|++   ..
T Consensus         9 a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~   77 (129)
T 2xev_A            9 AFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN----------FQLAEAQFRDLVSRYPTHDKAAG   77 (129)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTSTTHHH
T ss_pred             HHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHCCCCcccHH
Confidence            3344455555 667777777777777776   677777777777666          577777777777777777   66


Q ss_pred             chhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451        105 TWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT  150 (522)
Q Consensus       105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l  150 (522)
                      +|...+.++...   +++++++..++++++.+|.+..++.-+..+-
T Consensus        78 ~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           78 GLLKLGLSQYGE---GKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            677777777776   6777777777777777777666655554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.50  E-value=1.7e-07  Score=77.05  Aligned_cols=99  Identities=10%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcC
Q psy13451         42 DEALSLTSEVLRN---IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR  118 (522)
Q Consensus        42 ~eal~~~~~~l~~---np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~  118 (522)
                      ++|+..+.+++.+   +|++..+|...+.++...+.          +++++..++++++.+|++..+|...+.++..+  
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--   74 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE----------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL--   74 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--
Confidence            5788899999999   58899999999999998888          78999999999999999999999999999998  


Q ss_pred             CCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451        119 APNYEKELELCNYYLELDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus       119 ~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~  153 (522)
                       +++++++..+.++++.+|.+.....|.+-+....
T Consensus        75 -g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~  108 (117)
T 3k9i_A           75 -GRYEQGVELLLKIIAETSDDETIQSYKQAILFYA  108 (117)
T ss_dssp             -TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence             8889999999999999999888777766555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.50  E-value=6e-07  Score=90.11  Aligned_cols=117  Identities=13%  Similarity=0.024  Sum_probs=106.8

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH----------------hCCCCccchhhHHHHHHHhcCCCC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL----------------AQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----------------~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ...+|..++..+...+.          +++++..++++++                .+|....+|..++.++.++   ++
T Consensus       222 ~a~~~~~~g~~~~~~g~----------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---g~  288 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQN----------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM---SD  288 (370)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc---cC
Confidence            34668888888888777          7888888988888                7888999999999999999   99


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      ++++++.++++++.+|.+..+|..++.++..++. ++++++++.++++.+|.|..+|.....+...+
T Consensus       289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 79999999999999999999999988887766

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.46  E-value=8.3e-08  Score=79.01  Aligned_cols=100  Identities=8%  Similarity=-0.005  Sum_probs=75.8

Q ss_pred             CChHHHHHHHHHHHhh---cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCC
Q psy13451        120 PNYEKELELCNYYLEL---DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL  196 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~---d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~  196 (522)
                      +++++++.+++++++.   +|.+..+|...+.+....+. +++++++++++++.+|.+..+|.+.+.++..+        
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------   74 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL--------   74 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--------
Confidence            4566777788888887   67777888888888877777 67888888888888888888888888777777        


Q ss_pred             ccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451        197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG  232 (522)
Q Consensus       197 ~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~  232 (522)
                          +.++++++.+.+++..+|++..+..|.+.+..
T Consensus        75 ----g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           75 ----GRYEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             ----TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                67788888888888888888777777666543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.44  E-value=6.5e-07  Score=86.76  Aligned_cols=188  Identities=9%  Similarity=-0.003  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh---
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA---   98 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---   98 (522)
                      .+..........|++ ++|+..+++++.++|++    ..+|...+.+....+.          +++++..++.++..   
T Consensus         7 ~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~   75 (338)
T 3ro2_A            7 ELALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD----------YAKALEYHHHDLTLART   75 (338)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhc
Confidence            344445556667777 88999999999999998    4788888998888877          67777777777765   


Q ss_pred             ---CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCC-------------
Q psy13451         99 ---QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVA-------------  156 (522)
Q Consensus        99 ---~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~-------------  156 (522)
                         .|....+|...+.+....   +++++++..++++++..++.-.      ++...+.+....+..             
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T 3ro2_A           76 IGDQLGEAKASGNLGNTLKVL---GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP  152 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred             ccccHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence               556678889999999888   8999999999999998877655      888888888777651             


Q ss_pred             ------CHHHHHHHHHHHHh------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc--
Q psy13451        157 ------PLKELNYSTEKIEA------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS--  222 (522)
Q Consensus       157 ------~~~el~~~~~~i~~------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s--  222 (522)
                            ++++++++++++..      .+....+|...+.+....            +.++++++++.+++...|....  
T Consensus       153 ~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~  220 (338)
T 3ro2_A          153 EDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL------------GNFRDAVIAHEQRLLIAKEFGDKA  220 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHhcCChH
Confidence                  47788888888775      334445777788777776            7899999999999998877665  


Q ss_pred             ----hhhHHHHHhccCCCccc
Q psy13451        223 ----AWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       223 ----~W~y~~~ll~~~~~~~~  239 (522)
                          +|.....++...+++..
T Consensus       221 ~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          221 AERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHH
Confidence                77777777777666544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.43  E-value=6.3e-06  Score=79.45  Aligned_cols=165  Identities=15%  Similarity=0.034  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchH-----HH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINS-----LW-NYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA   98 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t-----~w-n~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~   98 (522)
                      ..+...+......|+| ++|++.+.+++...|....     .| .+.+.+....+.          +++++..+.+++..
T Consensus        76 ~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~  144 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD----------YEYCILELKKLLNQ  144 (293)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC----------HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHH
Confidence            3445566666777877 8899999999999887432     22 233444344344          78999999999987


Q ss_pred             CCCC------ccchhhHHHHHHHhcCCCChHHHHHHHHHHH---hhcCCCc----chhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451         99 QPKS------YGTWFQRCYVLDHISRAPNYEKELELCNYYL---ELDERNF----HCWDYRRYVTDRHKVAPLKELNYST  165 (522)
Q Consensus        99 ~pk~------y~~W~~R~~il~~l~~~~~~~~el~~~~~~l---~~d~kn~----~aW~~R~~~l~~~~~~~~~el~~~~  165 (522)
                      .++.      ..+|+..+.+....   +++++++.++++++   +..|.+.    .++...+.+....+. +++++++++
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~  220 (293)
T 2qfc_A          145 QLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVN  220 (293)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHH
Confidence            7765      45788889999888   99999999999999   4555532    589999999999998 799999999


Q ss_pred             HHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccchhHHHHH-HHHHHHHHhc
Q psy13451        166 EKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNE-FSMVESAVFT  216 (522)
Q Consensus       166 ~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~e-l~~~~~ai~~  216 (522)
                      ++++..+..      ..++.+.+.+...+            +.++++ .+++++|+.+
T Consensus       221 kal~~~~~~~~~~~~~~~~~~lg~~y~~~------------g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          221 KAIEISCRINSMALIGQLYYQRGECLRKL------------EYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTBCSSHHHHHHHHHHHHHHT------------TCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHH
Confidence            999876331      56788888888887            667788 7778888754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.43  E-value=1.6e-06  Score=71.46  Aligned_cols=118  Identities=12%  Similarity=0.045  Sum_probs=103.6

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      |+...+|...+.+....+.          +++++..++.++..+|.+..+|...+.++...   +++++++.+++++++.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKD----------FDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEV   67 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhh
Confidence            4456788888888888877          79999999999999999999999999999999   9999999999999999


Q ss_pred             cCCC-------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        136 DERN-------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       136 d~kn-------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      +|.+       ..+|...+.+....+. +++++++++++++.+| +..++.....+...+
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            9988       8899999999999988 7999999999999998 667766665554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.41  E-value=3.4e-06  Score=69.84  Aligned_cols=110  Identities=7%  Similarity=-0.153  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc---cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY---GTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y---~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                      ++..++.++...+.          +++++..++.++..+|.+.   .+|...+.+....   +++++++..++++++.+|
T Consensus         4 ~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            4 TAYNVAFDALKNGK----------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCC
Confidence            45566777777776          7999999999999999998   7999999999998   999999999999999999


Q ss_pred             CC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451        138 RN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKL  184 (522)
Q Consensus       138 kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l  184 (522)
                      .+   ..+|...+.+....+. +++++++++++++.+|.+..++.-+..+
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            99   7789999999999998 7999999999999999998877665543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=4.4e-07  Score=91.61  Aligned_cols=179  Identities=8%  Similarity=-0.094  Sum_probs=147.3

Q ss_pred             HHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh------CCC
Q psy13451         34 KRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA------QPK  101 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------~pk  101 (522)
                      ....|++ ++|+..+.+++.+      .|....+|...+.++...+.          +++++..++.++..      .|.
T Consensus        96 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  164 (411)
T 4a1s_A           96 YFYLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR----------FDEAAICCERHLTLARQLGDRLS  164 (411)
T ss_dssp             HHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHhhchHH
Confidence            3344555 7899999999999      78899999999999999988          68888888888887      566


Q ss_pred             CccchhhHHHHHHHhcCCCC-----------------hHHHHHHHHHHHhhcC------CCcchhhHHHHHHHhcCCCCH
Q psy13451        102 SYGTWFQRCYVLDHISRAPN-----------------YEKELELCNYYLELDE------RNFHCWDYRRYVTDRHKVAPL  158 (522)
Q Consensus       102 ~y~~W~~R~~il~~l~~~~~-----------------~~~el~~~~~~l~~d~------kn~~aW~~R~~~l~~~~~~~~  158 (522)
                      ...+|...+.+....   ++                 ++++++++.++++..+      ....+|...+.+....+. ++
T Consensus       165 ~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~  240 (411)
T 4a1s_A          165 EGRALYNLGNVYHAK---GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQ  240 (411)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHHHHHHHHHHc---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hH
Confidence            677999999999988   77                 8999999999988643      334588899999999988 79


Q ss_pred             HHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------cchhhH
Q psy13451        159 KELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------QSAWFY  226 (522)
Q Consensus       159 ~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------~s~W~y  226 (522)
                      +++++++++++..+.+..      +|...+.+....            +.++++++++++++...|..      ..+|..
T Consensus       241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  308 (411)
T 4a1s_A          241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL------------GQFEDAAEHYKRTLALAVELGEREVEAQSCYS  308 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC------------cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999998887655      888888888777            78999999999999998865      456666


Q ss_pred             HHHHhccCCCccc
Q psy13451        227 QRWLLGERTSPVQ  239 (522)
Q Consensus       227 ~~~ll~~~~~~~~  239 (522)
                      +..++...++...
T Consensus       309 la~~~~~~g~~~~  321 (411)
T 4a1s_A          309 LGNTYTLLHEFNT  321 (411)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHH
Confidence            6777766666544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.38  E-value=6.4e-06  Score=79.39  Aligned_cols=166  Identities=13%  Similarity=0.001  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchH----HHHHH--HHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy13451         24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINS----LWNYR--KEVLLHMKATLAEEELHELVDRELKLTKDCLL   97 (522)
Q Consensus        24 y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t----~wn~R--~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~   97 (522)
                      +..+.+.+......|++ ++|+..+.+++...|....    +..+.  +.+....+.          +++++..+++++.
T Consensus        75 ~~~l~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~Ai~~~~~al~  143 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD----------YEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC----------HHHHHHHHHHHHH
Confidence            33444556666677777 8899999999998876655    32233  332222223          6899999999999


Q ss_pred             hCCCCcc------chhhHHHHHHHhcCCCChHHHHHHHHHHHh-------hcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         98 AQPKSYG------TWFQRCYVLDHISRAPNYEKELELCNYYLE-------LDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        98 ~~pk~y~------~W~~R~~il~~l~~~~~~~~el~~~~~~l~-------~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      ..++...      +++..+.+....   +++++++.+++++++       ..+....++.+.+.+....+. ++++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~  219 (293)
T 3u3w_A          144 QQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQV  219 (293)
T ss_dssp             TCCCCSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence            7666554      577788888887   899999999999995       223334588999999999998 79999999


Q ss_pred             HHHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccchh-HHHHHHHHHHHHHhc
Q psy13451        165 TEKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQD-KYVNEFSMVESAVFT  216 (522)
Q Consensus       165 ~~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~~-~~~~el~~~~~ai~~  216 (522)
                      +++++..+..      ..+|.+.+.+...+            + .++++++++++|+.+
T Consensus       220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~------------g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          220 NKAIEISCRINSMALIGQLYYQRGECLRKL------------EYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTBCTTHHHHHHHHHHHHHHT------------TCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHH
Confidence            9999976544      56889999999888            5 468999999999865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=2.3e-07  Score=92.58  Aligned_cols=138  Identities=12%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC--CCCCccEEEcCC--CC------CCCCC-CC--CCCCC
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT--PLVACESLKLTH--CS------LSSLH-VF--PHLPS  434 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~l~~--n~------l~~~~-~~--~~l~~  434 (522)
                      +.|++++|.-..++.+. +++|+.|++..|.++......+.  .+++|+.|+|+.  |.      +..+. .+  ..+|+
T Consensus       175 ~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~  253 (362)
T 2ra8_A          175 NNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN  253 (362)
T ss_dssp             CEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT
T ss_pred             cEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC
Confidence            68999887322345543 78999999998887644433343  678899998853  21      11111 12  35788


Q ss_pred             cCEEEccCCCCCcc---------ccCcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCCCCCChhhhcC-CCC
Q psy13451        435 LESLDVSHNAPNII---------LCVYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAIDHIEDSVFAK-YEA  498 (522)
Q Consensus       435 L~~L~ls~N~l~~~---------~~~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l~~~~~~~l~~-l~~  498 (522)
                      |+.|++++|.++..         .+++|+.|+|+.|.|++.+      .+..+++|+.|+|++|.|++.....+.. +  
T Consensus       254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--  331 (362)
T 2ra8_A          254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--  331 (362)
T ss_dssp             CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred             cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence            99999988887631         1567888888888887742      1345678888888888877654444443 3  


Q ss_pred             ccEEEecCCC
Q psy13451        499 CVQVILTGNP  508 (522)
Q Consensus       499 L~~L~L~~N~  508 (522)
                      ...+++++|+
T Consensus       332 g~~~~~~~~~  341 (362)
T 2ra8_A          332 PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBC
T ss_pred             CCEEEecCCc
Confidence            2457887776

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.34  E-value=6.4e-07  Score=89.79  Aligned_cols=181  Identities=7%  Similarity=-0.063  Sum_probs=147.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc--
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY--  103 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y--  103 (522)
                      ......|++ ++|+..+.+++.+      .|....+|...+.++...+.          +++++..++.++...|+..  
T Consensus        55 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  123 (406)
T 3sf4_A           55 NAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN----------FDEAIVCCQRHLDISRELNDK  123 (406)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhcccc
Confidence            344455665 8899999999888      56778899999999999888          7899999999998877764  


Q ss_pred             ----cchhhHHHHHHHhcCCCC--------------------hHHHHHHHHHHHhh------cCCCcchhhHHHHHHHhc
Q psy13451        104 ----GTWFQRCYVLDHISRAPN--------------------YEKELELCNYYLEL------DERNFHCWDYRRYVTDRH  153 (522)
Q Consensus       104 ----~~W~~R~~il~~l~~~~~--------------------~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~~  153 (522)
                          .+|...+.+....   ++                    +++++..++++++.      .+....+|...+.+....
T Consensus       124 ~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  200 (406)
T 3sf4_A          124 VGEARALYNLGNVYHAK---GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL  200 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHc---CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence                4899999999888   77                    99999999999987      444456888899999988


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------c
Q psy13451        154 KVAPLKELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------Q  221 (522)
Q Consensus       154 ~~~~~~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------~  221 (522)
                      +. +++++++++++++..+....      +|...+.+....            +.+++++.++.+++...|..      .
T Consensus       201 g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          201 GN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------------GEFETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             TB-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHhCcCchHHH
Confidence            88 79999999999998776655      888888888877            78999999999999988876      4


Q ss_pred             chhhHHHHHhccCCCccc
Q psy13451        222 SAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       222 s~W~y~~~ll~~~~~~~~  239 (522)
                      .++.....++...++...
T Consensus       268 ~~~~~la~~~~~~g~~~~  285 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQDYEK  285 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCcHHH
Confidence            466666666666666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.31  E-value=2.9e-06  Score=85.96  Aligned_cols=134  Identities=13%  Similarity=0.271  Sum_probs=81.3

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +.+++++|.++.++.  |. ..+|+.+.+..+ ++.....+|.++++|+.+.+..| ++.++  .|.. .+|+.+.+. +
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence            345555555555544  33 345555555432 44333445555566666666543 33332  3444 456666663 3


Q ss_pred             CCCccc------cCcccEEEcCCCCCC-----CCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451        444 APNIIL------CVYFQSLKLTHCSLS-----SLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN  507 (522)
Q Consensus       444 ~l~~~~------~~~L~~L~Ls~n~l~-----~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  507 (522)
                      .++.++      +.+|+.+.+.+|.+.     .++.  |..+++|+.+.|. +.++.++..+|.+|++|+.+.|..|
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            344333      567888888877765     3443  8888888888888 4588888888888888998888655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.30  E-value=2e-06  Score=70.97  Aligned_cols=115  Identities=12%  Similarity=-0.040  Sum_probs=100.3

Q ss_pred             CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------
Q psy13451        101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------  174 (522)
Q Consensus       101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------  174 (522)
                      +...+|...+.+....   +++++++..++++++.+|.+..+|...+.+....+. ++++++++++++..+|.+      
T Consensus         2 ~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            2 KQALKEKELGNDAYKK---KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHH
Confidence            3456778888888777   899999999999999999999999999999999988 799999999999999887      


Q ss_pred             -chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451        175 -YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG  232 (522)
Q Consensus       175 -~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~  232 (522)
                       ..+|...+.+....            +.++++++++.+++..+| +..++.....+..
T Consensus        78 ~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           78 IAKAYARIGNSYFKE------------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence             88899998888877            789999999999999999 6677766655543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.29  E-value=2.3e-06  Score=69.72  Aligned_cols=87  Identities=11%  Similarity=-0.052  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCCh
Q psy13451         43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNY  122 (522)
Q Consensus        43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~  122 (522)
                      +|+..+.+++..+|++..+|...+.++...+.          +++++..++.++..+|.+..+|...+.++...   +++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~   69 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ----------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ---GDR   69 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc---CCH
Confidence            56788888888888888888888888888877          68888888888888888888888888888888   888


Q ss_pred             HHHHHHHHHHHhhcCCCcch
Q psy13451        123 EKELELCNYYLELDERNFHC  142 (522)
Q Consensus       123 ~~el~~~~~~l~~d~kn~~a  142 (522)
                      ++++..++++++.+|.+-..
T Consensus        70 ~~A~~~~~~al~~~~~~~~~   89 (115)
T 2kat_A           70 AGARQAWESGLAAAQSRGDQ   89 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhccccccH
Confidence            88888888888888765433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=2.1e-07  Score=83.69  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CcccEEEcCCCCCCCCC------CCCCCCCCCEEEc--cCCCCCCCC----hhhhcCCCCccEEEecCCCCccc
Q psy13451        451 VYFQSLKLTHCSLSSLH------VFPHLPSLESLDV--SHNAIDHIE----DSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~L--s~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++|+.|+|++|.|++.+      .+...++|+.|+|  ++|.|+...    ...+...++|+.|+|++|.++..
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            44555666666555422      1556678888999  788888753    23455668899999999888644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.25  E-value=1.5e-06  Score=84.04  Aligned_cols=182  Identities=7%  Similarity=-0.065  Sum_probs=145.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG  104 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~  104 (522)
                      .......|++ ++|+..+.+++.+      .|....+|...+.++...+.          +++++..++.++...|+...
T Consensus        50 ~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~  118 (338)
T 3ro2_A           50 GNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN----------FDEAIVCCQRHLDISRELND  118 (338)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHHHHhcC
Confidence            3344455665 8899999999988      66778899999999999887          78899999999887776644


Q ss_pred             ------chhhHHHHHHHhcCCCC--------------------hHHHHHHHHHHHhh------cCCCcchhhHHHHHHHh
Q psy13451        105 ------TWFQRCYVLDHISRAPN--------------------YEKELELCNYYLEL------DERNFHCWDYRRYVTDR  152 (522)
Q Consensus       105 ------~W~~R~~il~~l~~~~~--------------------~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~  152 (522)
                            +|...+.+....   ++                    +++++..+++++..      .+....++...+.+...
T Consensus       119 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  195 (338)
T 3ro2_A          119 KVGEARALYNLGNVYHAK---GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL  195 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHc---CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                  888889888888   66                    89999999998876      34445688888888888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------
Q psy13451        153 HKVAPLKELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------  220 (522)
Q Consensus       153 ~~~~~~~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------  220 (522)
                      .+. +++++++++++++..+.+..      +|...+.+....            +.++++++++.+++...|..      
T Consensus       196 ~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~  262 (338)
T 3ro2_A          196 LGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------------GEFETASEYYKKTLLLARQLKDRAVE  262 (338)
T ss_dssp             HTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhhcchhHH
Confidence            887 79999999999988766555      888888888777            78999999999999988776      


Q ss_pred             cchhhHHHHHhccCCCccc
Q psy13451        221 QSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       221 ~s~W~y~~~ll~~~~~~~~  239 (522)
                      ..++.....++...++...
T Consensus       263 ~~~~~~la~~~~~~g~~~~  281 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEK  281 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHH
Confidence            4456666666666665544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.21  E-value=2.2e-05  Score=78.54  Aligned_cols=164  Identities=15%  Similarity=0.008  Sum_probs=134.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451         29 ETIFEKRKNQEYDDEALSLTSEVLRNI------PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS  102 (522)
Q Consensus        29 ~~~~~~~~~~~~~~eal~~~~~~l~~n------p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~  102 (522)
                      -........|++ ++|+..+.+++.+-      |....+++..+.+...++.          +.+++..+.+++...++.
T Consensus       106 ~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~----------~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          106 FRGMYEFDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ----------THVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHHhC
Confidence            334445566777 88999999999873      3456788888888888887          688999999988876543


Q ss_pred             -------ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451        103 -------YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus       103 -------y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~  169 (522)
                             ..+++..+.+....   ++++++++.++++++..++.      ..++...+++....+. ++++++++.++++
T Consensus       175 ~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~  250 (378)
T 3q15_A          175 PLYSIRTIQSLFVIAGNYDDF---KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAK  250 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence                   34677778888888   99999999999999964322      3477788999988888 7999999999999


Q ss_pred             -----hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451        170 -----ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK  219 (522)
Q Consensus       170 -----~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~  219 (522)
                           .+|....++...+.+....            +.++++++++++++...+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKA------------GQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH
Confidence                 8898889999999998888            7899999999999998765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.19  E-value=6.3e-06  Score=80.17  Aligned_cols=162  Identities=6%  Similarity=-0.047  Sum_probs=124.8

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------
Q psy13451         35 RKNQEYDDEALSLTSEVLRNIPDI------NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------  102 (522)
Q Consensus        35 ~~~~~~~~eal~~~~~~l~~np~~------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------  102 (522)
                      +..|.+ ++|++.+.+++.+.+..      ..+++..+.++..++.          +++++..+++++...++.      
T Consensus        47 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           47 KNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR----------MPEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             HHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------GGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence            344555 88999999999987643      5677788888888777          578888888888875432      


Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS  176 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s  176 (522)
                      ..+|...+.++.   . +++++++.++++++++.+..      ..++...+.+...++. +++++++++++++..+.+..
T Consensus       116 a~~~~~lg~~~~---~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          116 AMALDRAGKLME---P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHT---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH---c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCC
Confidence            245555566553   3 78999999999999988765      4678888999999988 79999999999998776543


Q ss_pred             ------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451        177 ------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF  225 (522)
Q Consensus       177 ------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~  225 (522)
                            +|...+.+...+            +.+++++.++++++ .+|....+..
T Consensus       191 ~~~~~~~~~~~g~~~~~~------------g~~~~A~~~~~~al-~~p~~~~~~e  232 (307)
T 2ifu_A          191 YPTCYKKCIAQVLVQLHR------------ADYVAAQKCVRESY-SIPGFSGSED  232 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred             hhHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHh-CCCCCCCCHH
Confidence                  455555555554            68999999999999 9998876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=7.8e-07  Score=88.70  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=92.4

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC--CCC--CCCCCcCEEEccC--CC------CC----
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVF--PHLPSLESLDVSH--NA------PN----  446 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~ls~--N~------l~----  446 (522)
                      +..+|+|+.|.|++|.-. ..+. +. +++|+.|++..|.++.-  ..+  ..+|+|+.|+|+.  |.      +.    
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            567889999999988411 2333 43 78999999998887642  122  3688999999853  21      11    


Q ss_pred             ---ccccCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCCChh----hhcCCCCccEEEecCCCCccccc
Q psy13451        447 ---IILCVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHIEDS----VFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       447 ---~~~~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                         ...+++|+.|+|++|.+++...     .+.+++|++|+|+.|.|++....    .+..+++|+.|+|++|.++....
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence               1125799999999999875321     34678999999999999885422    23457899999999999885543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.09  E-value=8.2e-06  Score=66.39  Aligned_cols=87  Identities=9%  Similarity=-0.009  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHH
Q psy13451         87 RELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTE  166 (522)
Q Consensus        87 ~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~  166 (522)
                      +++..++.+++.+|++..+|+..+.++...   +++++++..++++++.+|.+..+|...+.+....+. ++++++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH---EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence            567889999999999999999999999998   999999999999999999999999999999999998 7999999999


Q ss_pred             HHHhcCCcchH
Q psy13451        167 KIEANFSNYSA  177 (522)
Q Consensus       167 ~i~~~~~n~sa  177 (522)
                      +++.+|.+...
T Consensus        79 al~~~~~~~~~   89 (115)
T 2kat_A           79 GLAAAQSRGDQ   89 (115)
T ss_dssp             HHHHHHHHTCH
T ss_pred             HHHhccccccH
Confidence            99998865443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.08  E-value=1e-05  Score=64.26  Aligned_cols=76  Identities=12%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451         54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL  133 (522)
Q Consensus        54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l  133 (522)
                      .+|++..+|...+.++...+.          +++++..++.+++.+|++..+|..++.++..+   ++++++++.+++++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al   68 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN----------ASRALALFEELVETDPDYVGTYYHLGKLYERL---DRTDDAIDTYAQGI   68 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence            467777777777777777766          67777777777777777777777777777777   77777777777777


Q ss_pred             hhcCCCcch
Q psy13451        134 ELDERNFHC  142 (522)
Q Consensus       134 ~~d~kn~~a  142 (522)
                      +++|++-..
T Consensus        69 ~l~~~~~~~   77 (100)
T 3ma5_A           69 EVAREEGTQ   77 (100)
T ss_dssp             HHHHHHSCH
T ss_pred             hhhhcCCch
Confidence            776654333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.06  E-value=2e-05  Score=60.51  Aligned_cols=82  Identities=15%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                      ...+|...+.++...+.          +++++..+++++..+|.+..+|...+.++...   +++++++..++++++.+|
T Consensus         8 ~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcCC
Confidence            45666666666666655          56777777777777777777777777777666   666777777777777777


Q ss_pred             CCcchhhHHHHHHHh
Q psy13451        138 RNFHCWDYRRYVTDR  152 (522)
Q Consensus       138 kn~~aW~~R~~~l~~  152 (522)
                      .+..+|...+.+...
T Consensus        75 ~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           75 NNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            776666666655543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.04  E-value=9.2e-06  Score=63.96  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=70.8

Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFH-CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      .++.++...   +++++++..++++++.+|.+.. +|..++.+....+. +++++++++++++.+|.+..+|.+      
T Consensus         5 ~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            5 KTIKELINQ---GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            345555555   7788888888888888888888 88888888888877 688888888888888888888755      


Q ss_pred             hhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc
Q psy13451        187 LLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS  222 (522)
Q Consensus       187 ~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s  222 (522)
                                    ..+.+.+.++.+++..+|++.+
T Consensus        75 --------------~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 --------------KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             --------------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             --------------HHHHHHHHHHHHHhccCccccc
Confidence                          2466777778888888777654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.04  E-value=1.2e-05  Score=80.40  Aligned_cols=153  Identities=8%  Similarity=-0.028  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh---CC---CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA---QP---KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~p---k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      .+.+++.+....+.          +++++..+++++..   .|   ....+|+..+++....   +++++++..+.++++
T Consensus       105 ~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---~~~~~A~~~~~~al~  171 (383)
T 3ulq_A          105 FNFFRGMYELDQRE----------YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM---KQTYFSMDYARQAYE  171 (383)
T ss_dssp             HHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence            45558888888877          79999999999986   23   3458899999999998   999999999999999


Q ss_pred             hcCCCc-------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc------hHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        135 LDERNF-------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY------SAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       135 ~d~kn~-------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~------saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      +.++.-       .++...+.+...++. ++++++++.++++..+...      .++++.+.+....            +
T Consensus       172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------------g  238 (383)
T 3ulq_A          172 IYKEHEAYNIRLLQCHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ------------S  238 (383)
T ss_dssp             HHHTCSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------T
T ss_pred             HHHhCccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC------------C
Confidence            866554       488888999999988 7999999999999866554      4888999988887            7


Q ss_pred             HHHHHHHHHHHHHh-----cC-CCCcchhhHHHHHhccCCCccc
Q psy13451        202 KYVNEFSMVESAVF-----TE-PKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       202 ~~~~el~~~~~ai~-----~~-p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      .++++++++.+|+.     .+ |....++...+.+....+++..
T Consensus       239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  282 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK  282 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHH
Confidence            89999999999999     56 7777888888888888877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.03  E-value=5.5e-07  Score=80.94  Aligned_cols=37  Identities=8%  Similarity=0.040  Sum_probs=22.4

Q ss_pred             CcccEEEc--CCCCCCCCCC------CCCCCCCCEEEccCCCCCC
Q psy13451        451 VYFQSLKL--THCSLSSLHV------FPHLPSLESLDVSHNAIDH  487 (522)
Q Consensus       451 ~~L~~L~L--s~n~l~~~~~------l~~~~~L~~L~Ls~N~l~~  487 (522)
                      .+|+.|+|  ++|.|++...      +...++|+.|+|++|.++.
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            34555555  5555554321      4455678888888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.03  E-value=9.8e-06  Score=68.04  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             cEEEcCCCCCC--CCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        454 QSLKLTHCSLS--SLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       454 ~~L~Ls~n~l~--~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ..++.+++.++  .+|. .-.++|+.|+|++|.|+.++...|..+++|+.|+|++|++.|+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            36777777777  6663 1235799999999999999999999999999999999999999965

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=1.8e-05  Score=63.30  Aligned_cols=83  Identities=10%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC
Q psy13451         59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDER  138 (522)
Q Consensus        59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k  138 (522)
                      ..+|..++.++...+.          +++++..+++++..+|++..+|..++.++..+   ++++++++.++++++.+|.
T Consensus         4 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGL----------YREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCC
Confidence            4566666666666665          57777777777777777777777777777776   6677777777777777777


Q ss_pred             C------cchhhHHHHHHHhcC
Q psy13451        139 N------FHCWDYRRYVTDRHK  154 (522)
Q Consensus       139 n------~~aW~~R~~~l~~~~  154 (522)
                      +      ..++..++.+...++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            6      555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.00  E-value=1.1e-05  Score=64.04  Aligned_cols=77  Identities=13%  Similarity=0.023  Sum_probs=68.7

Q ss_pred             hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451         98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA  177 (522)
Q Consensus        98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa  177 (522)
                      .+|++..+|+..+.++...   +++++++..++++++.+|.+..+|.+.+.+....+. +++++++++++++..+.+...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCch
Confidence            5899999999999999998   999999999999999999999999999999999998 799999999999987765544


Q ss_pred             h
Q psy13451        178 W  178 (522)
Q Consensus       178 W  178 (522)
                      +
T Consensus        78 ~   78 (100)
T 3ma5_A           78 K   78 (100)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.98  E-value=2.3e-05  Score=61.63  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         32 FEKRKNQEYDDEALSLTSEVLRNIPDINS-LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t-~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      ......|++ ++|+..+++++..+|++.. +|..++.++...+.          +++++..++.+++.+|++..+|.+  
T Consensus         8 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~--   74 (99)
T 2kc7_A            8 KELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD----------WQKALNNYQSAIELNPDSPALQAR--   74 (99)
T ss_dssp             HHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH--
Confidence            334445555 6677777777777777777 77777777777766          577777777777777777777644  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERN  139 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn  139 (522)
                         .      .+.+.+.++++++..+|.+
T Consensus        75 ---~------~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 ---K------MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             ---H------HHHHHHHHHCCTTHHHHCC
T ss_pred             ---H------HHHHHHHHHHHHhccCccc
Confidence               1      1245566666666666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.96  E-value=7.6e-05  Score=71.72  Aligned_cols=139  Identities=12%  Similarity=0.000  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhCCCCcc-----chh-hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHh
Q psy13451         85 VDRELKLTKDCLLAQPKSYG-----TWF-QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDR  152 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~-----~W~-~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~  152 (522)
                      +++++..+..++...|+...     .|+ +.+.+...   .+++++++..+.++++..+++      ..+|+..+.+...
T Consensus        91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            78999999999998887532     222 22333333   378999999999999877665      4578888999999


Q ss_pred             cCCCCHHHHHHHHHHH---HhcCCcc----hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC-----
Q psy13451        153 HKVAPLKELNYSTEKI---EANFSNY----SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD-----  220 (522)
Q Consensus       153 ~~~~~~~el~~~~~~i---~~~~~n~----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~-----  220 (522)
                      .+. ++++++++++++   +..+.+.    .++++.+.++...            +.++++++++++++.+.+..     
T Consensus       168 ~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~------------~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          168 NGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD------------SRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             TTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             cCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH------------hhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            888 799999999999   5556543    6889999998888            88999999999999886532     


Q ss_pred             -cchhhHHHHHhccCCCccc
Q psy13451        221 -QSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       221 -~s~W~y~~~ll~~~~~~~~  239 (522)
                       ..+++..+.+....+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~  254 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEA  254 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHcCCcHH
Confidence             3566667777777776554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.93  E-value=2.7e-05  Score=59.82  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=75.8

Q ss_pred             CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhH
Q psy13451        101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHY  180 (522)
Q Consensus       101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~  180 (522)
                      .+..+|...+.+....   +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..
T Consensus         7 ~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4567888899988888   899999999999999999999999999999999988 799999999999999999999998


Q ss_pred             HHHHhch
Q psy13451        181 RSKLLPL  187 (522)
Q Consensus       181 r~~ll~~  187 (522)
                      .+.+...
T Consensus        83 l~~~~~~   89 (91)
T 1na3_A           83 LGNAKQK   89 (91)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.92  E-value=9e-05  Score=67.66  Aligned_cols=168  Identities=6%  Similarity=-0.067  Sum_probs=125.7

Q ss_pred             CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC
Q psy13451         41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP  120 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~  120 (522)
                      +++|+..+.++...  .+..+++.-+.++...+.          +++++.++++++..  .+..+++.-+.++..-....
T Consensus         2 ~~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~   67 (212)
T 3rjv_A            2 ATEPGSQYQQQAEA--GDRRAQYYLADTWVSSGD----------YQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQA   67 (212)
T ss_dssp             --CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSC
T ss_pred             CchHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Confidence            35678888888875  788888888888888665          68888888888764  57788888888766521123


Q ss_pred             ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCC--cchHhhHHHHHhchhCCCCCC
Q psy13451        121 NYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFS--NYSAWHYRSKLLPLLYPDPNN  194 (522)
Q Consensus       121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~--n~saW~~r~~ll~~l~~~~~~  194 (522)
                      ++++++.++.+++  ++.+..++..-+.+...    .+. ++++++++.++++.+++  +..|++..+.+...-...   
T Consensus        68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~---  141 (212)
T 3rjv_A           68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG---  141 (212)
T ss_dssp             CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS---
T ss_pred             CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC---
Confidence            7889999999985  45678888888888865    333 68889999999998884  578888888877653211   


Q ss_pred             CCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        195 HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       195 ~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                           ...+++++.++.+|+.. |.+..+++.++.+....
T Consensus       142 -----~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          142 -----PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             -----SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             -----CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence                 14688899999999988 77777887777776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=1.1e-06  Score=83.20  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             CCCCccEEEcCCCCCCCCCCCC----CCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451        409 PLVACESLKLTHCSLSSLHVFP----HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA  484 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~  484 (522)
                      .+++|+.|+|++|.|++++++.    .+++|+.|+|++|.|+.+.               .+..+..+ +|+.|+|++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---------------~l~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---------------ELDKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---------------GGGGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---------------hhhhcccC-CcceEEccCCc
Confidence            4667777777777777765432    5666666666666665431               11113334 78888888888


Q ss_pred             CCCC-C------hhhhcCCCCccEEE
Q psy13451        485 IDHI-E------DSVFAKYEACVQVI  503 (522)
Q Consensus       485 l~~~-~------~~~l~~l~~L~~L~  503 (522)
                      +++- +      ...+..+++|+.||
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CccccCcchhHHHHHHHHCcccCeEC
Confidence            8752 2      23567788888765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.91  E-value=2.1e-05  Score=76.35  Aligned_cols=141  Identities=10%  Similarity=-0.010  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------ccchhhHHHHHH
Q psy13451         41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------YGTWFQRCYVLD  114 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------y~~W~~R~~il~  114 (522)
                      .++|+..+.++              +.++...+.          +++++..+.+++...++.      ..++...+.++.
T Consensus        32 ~~~A~~~~~~a--------------~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~   87 (307)
T 2ifu_A           32 YDSAASEYAKA--------------AVAFKNAKQ----------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK   87 (307)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            36677777766              234455555          688888888888877654      356777788888


Q ss_pred             HhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------chHhhHHH
Q psy13451        115 HISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------YSAWHYRS  182 (522)
Q Consensus       115 ~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~saW~~r~  182 (522)
                      .+   +++++++.++++++++.++.      ..++...+.+... +. +++++++++++++..+..      ..++...+
T Consensus        88 ~~---g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           88 DL---QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HT---TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            87   89999999999999986442      3577788888888 76 799999999999987754      45777788


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS  222 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s  222 (522)
                      .++..+            +.++++++++.+++.+.|.+..
T Consensus       163 ~~~~~~------------g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          163 RLLVRQ------------QKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHT------------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHc------------CCHHHHHHHHHHHHHHHHHcCC
Confidence            888777            8899999999999999887764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.88  E-value=2.9e-05  Score=62.04  Aligned_cols=84  Identities=4%  Similarity=-0.085  Sum_probs=74.9

Q ss_pred             CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------c
Q psy13451        102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------Y  175 (522)
Q Consensus       102 ~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~  175 (522)
                      +..+|..++.+....   ++++++++.++++++.+|.+..+|..++.+...++. +++++++++++++.+|.+      .
T Consensus         3 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHH
Confidence            456788889888888   999999999999999999999999999999999998 799999999999999999      7


Q ss_pred             hHhhHHHHHhchhC
Q psy13451        176 SAWHYRSKLLPLLY  189 (522)
Q Consensus       176 saW~~r~~ll~~l~  189 (522)
                      .++..++.+...+.
T Consensus        79 ~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           79 KLQYRLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=4.4e-06  Score=79.14  Aligned_cols=61  Identities=21%  Similarity=0.237  Sum_probs=45.9

Q ss_pred             cCcccEEEcCCCCCCCCCC----CCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccEEEecCCCCcc
Q psy13451        450 CVYFQSLKLTHCSLSSLHV----FPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       450 ~~~L~~L~Ls~n~l~~~~~----l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      .+.|+.|+|++|.|+++..    +..+++|+.|+|++|.|+++. ...+..+ +|+.|+|++|+++.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            3566777777777766543    347899999999999999873 2334444 89999999999975

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.75  E-value=0.0001  Score=65.88  Aligned_cols=156  Identities=9%  Similarity=-0.156  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH------hCCCCccchhhHHHHHH
Q psy13451         42 DEALSLTSEVLRNIP-DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL------AQPKSYGTWFQRCYVLD  114 (522)
Q Consensus        42 ~eal~~~~~~l~~np-~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------~~pk~y~~W~~R~~il~  114 (522)
                      ++|......+ .-+| ....+|+..+.+....+.          +++++..++.++.      ..|....+|...+++..
T Consensus         9 ~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            9 ALAERQAQAL-LAHPATASGARFMLGYVYAFMDR----------FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             HHHHHHHHHH-HTSTTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            4555533333 3355 778899999999998887          6888888888888      55566788888999998


Q ss_pred             HhcCCCChHHHHHHHHHHHhh---cC----CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cch----HhhHH
Q psy13451        115 HISRAPNYEKELELCNYYLEL---DE----RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NYS----AWHYR  181 (522)
Q Consensus       115 ~l~~~~~~~~el~~~~~~l~~---d~----kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~s----aW~~r  181 (522)
                      ..   +++++++..+.++++.   .+    ....++...+.+....+. +++++++++++++....  +..    ++...
T Consensus        78 ~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  153 (203)
T 3gw4_A           78 MA---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGL  153 (203)
T ss_dssp             HT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hc---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            88   8999999999999998   33    234567788888888887 78999999999975332  221    23556


Q ss_pred             HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                      +.+....            +.++++.+++.+++.+.......+
T Consensus       154 a~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          154 GDLAQQE------------KNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHC------------cCHHHHHHHHHHHHHHHHHcCCHH
Confidence            6666555            788999999999998765554444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.61  E-value=0.00031  Score=67.43  Aligned_cols=117  Identities=10%  Similarity=-0.021  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-------CCCCccchh
Q psy13451         41 DDEALSLTSEVLRNIPDIN------SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA-------QPKSYGTWF  107 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~------t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-------~pk~y~~W~  107 (522)
                      .++|+..+.+++.+.++..      .+++.-+.+....+.          +++++..+++++..       .|....+++
T Consensus       131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY----------LKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            3889999999999765433      378888888888887          68888888888852       233346899


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEA  170 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~  170 (522)
                      ..+.++...   ++++++++++++++++.+++      ..+|...+.+...++..++++++++.+++..
T Consensus       201 nlg~~y~~~---~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          201 NHAKALYLD---SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            999999999   99999999999999987655      5689999999999996458999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.51  E-value=0.0012  Score=60.03  Aligned_cols=162  Identities=7%  Similarity=-0.031  Sum_probs=124.6

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHh
Q psy13451         37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI  116 (522)
Q Consensus        37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l  116 (522)
                      .+++ ++|+..+.+++..  .+..+++.-+.++.. +- .     .+-+++++..+++++.  +.+..+++..+.++..-
T Consensus        31 ~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g-~-----~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g   98 (212)
T 3rjv_A           31 SGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP-Q-----QADYPQARQLAEKAVE--AGSKSGEIVLARVLVNR   98 (212)
T ss_dssp             HTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST-T-----SCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCG
T ss_pred             CCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC-C-----CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC
Confidence            3444 8899999999875  688999998888876 31 0     0015888888888854  67889999999988762


Q ss_pred             c-CCCChHHHHHHHHHHHhhcC--CCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451        117 S-RAPNYEKELELCNYYLELDE--RNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY  189 (522)
Q Consensus       117 ~-~~~~~~~el~~~~~~l~~d~--kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~  189 (522)
                      . ...++++++.++.++++.++  .+..++..-+.+...    .+. +++++.++.++++. +.+..|++..+.+...-.
T Consensus        99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~  176 (212)
T 3rjv_A           99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGE  176 (212)
T ss_dssp             GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCB
T ss_pred             CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCC
Confidence            1 14789999999999999998  468999999999987    333 68999999999998 677779888888776532


Q ss_pred             CCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451        190 PDPNNHLPIEQDKYVNEFSMVESAVFTEP  218 (522)
Q Consensus       190 ~~~~~~~~~~~~~~~~el~~~~~ai~~~p  218 (522)
                      ..      .....+++++.++.+|+...+
T Consensus       177 gg------~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          177 KG------FIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             TT------TBCCCHHHHHHHHHHHHHHTC
T ss_pred             CC------CCCCCHHHHHHHHHHHHHcCC
Confidence            10      001368999999999998743

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.49  E-value=0.00044  Score=58.53  Aligned_cols=134  Identities=8%  Similarity=-0.050  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc------cchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY------GTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y------~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      ..++...+.+....+.          +++++..+..++...|+..      .++...+.+....   +++++++..++++
T Consensus         9 ~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a   75 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGN----------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---GEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence            4567778888887776          6888888888888766644      4788888888888   8999999999999


Q ss_pred             HhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccch
Q psy13451        133 LELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQ  200 (522)
Q Consensus       133 l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~  200 (522)
                      ++..++.      ..++...+.+....+. +++++++++++++.....      ..++...+.+....            
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~------------  142 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL------------  142 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc------------
Confidence            9987664      5578888888888888 799999999999863322      23455555555555            


Q ss_pred             hHHHHHHHHHHHHHhcCC
Q psy13451        201 DKYVNEFSMVESAVFTEP  218 (522)
Q Consensus       201 ~~~~~el~~~~~ai~~~p  218 (522)
                      +.++++++++.+++.+..
T Consensus       143 g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          143 GNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            778999999999987644

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.49  E-value=0.0012  Score=64.75  Aligned_cols=129  Identities=9%  Similarity=-0.001  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCC
Q psy13451         41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT-LAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRA  119 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~-~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~  119 (522)
                      -.+|+.+++++++++|++..+|-.+..+...+... .........+..++... ..+...|....++.--.......   
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~---  290 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVK---  290 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhC---
Confidence            37899999999999999999999877766532211 01122223345555522 34456677665554444444434   


Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~  175 (522)
                      +++++++..+++++.++| +..+|.-.+++....|. ++++++.+.+++..+|+..
T Consensus       291 gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM-NREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred             CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcC
Confidence            899999999999999996 57788899999999998 7999999999999999885

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.49  E-value=0.00015  Score=69.01  Aligned_cols=133  Identities=5%  Similarity=-0.170  Sum_probs=111.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC--ccchh
Q psy13451         30 TIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS--YGTWF  107 (522)
Q Consensus        30 ~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~--y~~W~  107 (522)
                      ....+...|+| ++|.+.++.++..+|++. +.+.|+.+..+.++          +.+++..++.+....+..  ..+++
T Consensus       108 yA~~L~~~g~y-~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r----------~~dA~~~l~~a~~~~d~~~~~~a~~  175 (282)
T 4f3v_A          108 FAACEAAQGNY-ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER----------WTDVIDQVKSAGKWPDKFLAGAAGV  175 (282)
T ss_dssp             HHHHHHHHTCH-HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC----------HHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHCCCH-HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC----------HHHHHHHHHHhhccCCcccHHHHHH
Confidence            34455666777 889999999999999999 99999999999888          799999998776643222  35899


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhc--CC-CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELD--ER-NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d--~k-n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                      +.+.++..+   +.+++++.++++++.-.  |. ...++.+++.++..+++ .+++.+.+.+++..+|. --+|.
T Consensus       176 ~LG~al~~L---G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          176 AHGVAAANL---ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHC---CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-HHHHH
Confidence            999999999   99999999999998644  55 55699999999999998 69999999999999998 55443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.48  E-value=0.00024  Score=70.82  Aligned_cols=154  Identities=10%  Similarity=-0.053  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC------CccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451         60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK------SYGTWFQRCYVLDHISRAPNYEKELELCNYYL  133 (522)
Q Consensus        60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk------~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l  133 (522)
                      -.+.+++......+.          +++++..+++++...++      ...+++..+.+...+   +++.+++..+.+++
T Consensus       102 ~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~---~~~~~A~~~~~~al  168 (378)
T 3q15_A          102 YSLFFRGMYEFDQKE----------YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM---KQTHVSMYHILQAL  168 (378)
T ss_dssp             HHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence            367788888888777          79999999999986432      446788888888888   89999999999999


Q ss_pred             hhcCCC-------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC------CcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451        134 ELDERN-------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF------SNYSAWHYRSKLLPLLYPDPNNHLPIEQ  200 (522)
Q Consensus       134 ~~d~kn-------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~------~n~saW~~r~~ll~~l~~~~~~~~~~~~  200 (522)
                      +..++.       ..++...+.+....+. ++++++++.++++...      .-..+++..+.+....            
T Consensus       169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------------  235 (378)
T 3q15_A          169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS------------  235 (378)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------
Confidence            986653       3467788888888888 7999999999998632      1235677788888777            


Q ss_pred             hHHHHHHHHHHHHHh-----cCCCCcchhhHHHHHhccCCCccc
Q psy13451        201 DKYVNEFSMVESAVF-----TEPKDQSAWFYQRWLLGERTSPVQ  239 (522)
Q Consensus       201 ~~~~~el~~~~~ai~-----~~p~~~s~W~y~~~ll~~~~~~~~  239 (522)
                      +.++++++++.+++.     .+|....++...+.+....++...
T Consensus       236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  279 (378)
T 3q15_A          236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK  279 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence            789999999999999     888888888888888888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.37  E-value=0.0033  Score=62.10  Aligned_cols=157  Identities=14%  Similarity=-0.075  Sum_probs=118.6

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCchH-----HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc----
Q psy13451         35 RKNQEYDDEALSLTSEVLRNIPDINS-----LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT----  105 (522)
Q Consensus        35 ~~~~~~~~eal~~~~~~l~~np~~~t-----~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~----  105 (522)
                      ...|++ ++|+..+.+++...|....     +++..+.+....+.          +++++..++.++...|+.-..    
T Consensus        25 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           25 INDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE----------LTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345555 8899999999999986643     56677777777776          688888888888876655433    


Q ss_pred             --hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC--------CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451        106 --WFQRCYVLDHISRAPNYEKELELCNYYLELDER--------NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       106 --W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k--------n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~  175 (522)
                        ..+.+.+....   +++++++..++++++..++        ...++...+.+....+. ++++.+++.+++...+...
T Consensus        94 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           94 WSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccC
Confidence              45667777676   8999999999999997643        33456667888888888 7999999999999877532


Q ss_pred             -----hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451        176 -----SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP  218 (522)
Q Consensus       176 -----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p  218 (522)
                           .+|...+.+....            +.++++..++.+++...+
T Consensus       170 ~~~~~~~~~~la~~~~~~------------g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          170 PQQQLQCLAMLIQCSLAR------------GDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             GGGGHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHh
Confidence                 3556666666555            789999999999987743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.37  E-value=5.1e-05  Score=66.75  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=37.1

Q ss_pred             CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC-CCCC--CCCCCC----CCcCEEEccCCC-CC
Q psy13451        387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS-LSSL--HVFPHL----PSLESLDVSHNA-PN  446 (522)
Q Consensus       387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l----~~L~~L~ls~N~-l~  446 (522)
                      ..|+.||+++|.++......+.++++|+.|+|++|. |++-  ..+..+    ++|+.|++++|. |+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            357777777777766555666677777777777773 5542  223332    357777777663 54

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.34  E-value=5.8e-05  Score=66.42  Aligned_cols=85  Identities=11%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             cccCCCCCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCC-CCcc-----c-----cCcccEEEcCCCC-CCCCCC-
Q psy13451        404 LRHLTPLVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNA-PNII-----L-----CVYFQSLKLTHCS-LSSLHV-  468 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~-l~~~-----~-----~~~L~~L~Ls~n~-l~~~~~-  468 (522)
                      |.....-..|+.||++++.|+.  +..+..+++|+.|+|++|. ++.-     .     +++|+.|+|++|. |++.+. 
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4333333579999999999876  3467889999999999985 6531     1     2368888888874 776432 


Q ss_pred             -CCCCCCCCEEEccCCC-CCCC
Q psy13451        469 -FPHLPSLESLDVSHNA-IDHI  488 (522)
Q Consensus       469 -l~~~~~L~~L~Ls~N~-l~~~  488 (522)
                       +..+++|+.|+|+++. |++.
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHhcCCCCCEEECCCCCCCCch
Confidence             6667888888888774 6653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.32  E-value=0.0047  Score=70.20  Aligned_cols=185  Identities=9%  Similarity=-0.076  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451         21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP  100 (522)
Q Consensus        21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p  100 (522)
                      +..-..+.....+..+.|.+ +||++.|.++     ++..+|.....++.+++.          ++++++++..+.+..+
T Consensus      1102 vn~p~vWsqLAKAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGk----------yEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGN----------WEELVKYLQMARKKAR 1165 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhcc
Confidence            33333444445555556666 7888888654     888888888888888776          4556666555554443


Q ss_pred             C---------------------------CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451        101 K---------------------------SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus       101 k---------------------------~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~  153 (522)
                      .                           +...|..-+..+...   +.|++++.+|.++        ..|...+-++.++
T Consensus      1166 e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~e---g~YeeA~~~Y~kA--------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A         1166 ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVHL 1234 (1630)
T ss_pred             cccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhh--------hHHHHHHHHHHHh
Confidence            3                           223455555555555   7889999999886        4788888888888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc-----------hhC--CCCCC-----CCccchhHHHHHHHHHHHHHh
Q psy13451        154 KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP-----------LLY--PDPNN-----HLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       154 ~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~-----------~l~--~~~~~-----~~~~~~~~~~~el~~~~~ai~  215 (522)
                      +. ++++++.+.++     .|..+|..-.++.-           .+.  .....     ..-...+.+++++.++++++.
T Consensus      1235 ge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1235 GE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             CC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            87 78999999888     55688874444431           000  00000     001123678899999999999


Q ss_pred             cCCCCcchhhHHHHHhccCCCcc
Q psy13451        216 TEPKDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       216 ~~p~~~s~W~y~~~ll~~~~~~~  238 (522)
                      ++|.+...|.....+..+-.+..
T Consensus      1309 LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1309 LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             cChhHhHHHHHHHHHHHhCCHHH
Confidence            99999999999999988765533

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.29  E-value=0.0037  Score=61.38  Aligned_cols=163  Identities=9%  Similarity=0.024  Sum_probs=109.6

Q ss_pred             HHHHHHhCCCchHHHHH--HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC-----
Q psy13451         48 TSEVLRNIPDINSLWNY--RKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP-----  120 (522)
Q Consensus        48 ~~~~l~~np~~~t~wn~--R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~-----  120 (522)
                      .+.+...-|++.+||-+  |+.-+...+.   +    +-+.+++.+++++++.+|.+..+|..+.++........     
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~---~----~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~  255 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGD---D----KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK  255 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCS---H----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCC---H----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchh
Confidence            34566778888888875  4433332211   1    22689999999999999999999998888765331101     


Q ss_pred             ---ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451        121 ---NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP  197 (522)
Q Consensus       121 ---~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~  197 (522)
                         .+..++... .++..+|.+..++.=-+.+.-..+. +++++..+++++..||+ .-+|...+++....         
T Consensus       256 ~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~---------  323 (372)
T 3ly7_A          256 QLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEMK---------  323 (372)
T ss_dssp             HHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT---------
T ss_pred             hHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC---------
Confidence               112222211 2335566655544333333333355 79999999999999974 56777888887766         


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        198 IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       198 ~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                         +..+++++.+.+|+.++|.++ .+.+...+...
T Consensus       324 ---G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l~F~  355 (372)
T 3ly7_A          324 ---GMNREAADAYLTAFNLRPGAN-TLYWIENGIFQ  355 (372)
T ss_dssp             ---TCHHHHHHHHHHHHHHSCSHH-HHHHHHHSSSC
T ss_pred             ---CCHHHHHHHHHHHHhcCCCcC-hHHHHhCceee
Confidence               889999999999999999996 56555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.24  E-value=0.0024  Score=65.99  Aligned_cols=162  Identities=7%  Similarity=-0.068  Sum_probs=121.8

Q ss_pred             CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHH
Q psy13451         41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHM-----KATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH  115 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-----~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~  115 (522)
                      .++|+..+.+++..  .+..++...+.+....     +.          +++++..+.+++..  .+..+|+..++++..
T Consensus       275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~----------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~  340 (490)
T 2xm6_A          275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN----------REQAISWYTKSAEQ--GDATAQANLGAIYFR  340 (490)
T ss_dssp             HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC----------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Confidence            36677777777654  5566777777766654     22          57888888888875  456788999998887


Q ss_pred             hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       116 l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      .....++++++.++.++++.  .+..+|.+-+.+...    .+. ++++++++.++++.+  +..||.+.+.+...-...
T Consensus       341 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          341 LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence            51123788999999999987  578899999999887    444 689999999999864  678898888887752111


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhcCCC---CcchhhHHHH
Q psy13451        192 PNNHLPIEQDKYVNEFSMVESAVFTEPK---DQSAWFYQRW  229 (522)
Q Consensus       192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~---~~s~W~y~~~  229 (522)
                              .+.+++++.++++|+..+|+   +..++.....
T Consensus       416 --------~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          416 --------ERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             --------CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence                    15789999999999999954   7777765443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.23  E-value=0.0015  Score=55.19  Aligned_cols=127  Identities=8%  Similarity=0.031  Sum_probs=97.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC--
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDIN------SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS--  102 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~------t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~--  102 (522)
                      .......|++ ++|+..+.+++.+.|+..      .++...+.+....+.          +++++..++.++...++.  
T Consensus        16 ~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A           16 GNTHYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE----------FETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhCC
Confidence            3344455665 889999999999877544      478888888888877          688888888888866554  


Q ss_pred             ----ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q psy13451        103 ----YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF  172 (522)
Q Consensus       103 ----y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~  172 (522)
                          ..++...+++....   ++++++++.++++++..++.      ..++...+.+....+. +++++++++++++.-.
T Consensus        85 ~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLL---QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHH
Confidence                56788888888888   89999999999999875433      3456666777777777 6899999999887643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.15  E-value=0.0058  Score=62.56  Aligned_cols=164  Identities=12%  Similarity=-0.028  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCCCh
Q psy13451         44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAPNY  122 (522)
Q Consensus        44 al~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~~~  122 (522)
                      +..++..+...+|+   +++..+.++...+..       +-+++++..+.++....|....+|+.-+.++.... ...++
T Consensus       164 a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~-------~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          164 VERICKAALNTTDI---CYVELATVYQKKQQP-------EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             HHHHHHHHTTTCTT---HHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             HHHHHHHHHcCCHH---HHHHHHHHHHHcCCc-------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence            44455555566665   888888888775521       12689999999999999999999888888886542 34689


Q ss_pred             HHHHHHHHHHHhhcCCCcchhhHHHHH-H--HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccc
Q psy13451        123 EKELELCNYYLELDERNFHCWDYRRYV-T--DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIE  199 (522)
Q Consensus       123 ~~el~~~~~~l~~d~kn~~aW~~R~~~-l--~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~  199 (522)
                      ++++.+++++.   |.+..++..-+.+ .  ...+. ++++++++.++++.+  +..|+++.+.++..-..        .
T Consensus       234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d-~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g--------~  299 (452)
T 3e4b_A          234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD-VEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKW--------V  299 (452)
T ss_dssp             HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSS--------S
T ss_pred             HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC--------C
Confidence            99999999998   8999999999998 4  33343 689999999998665  88899999888763211        1


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        200 QDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       200 ~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                      ...++++++++.+|.   |++..+++.++.++...
T Consensus       300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRG  331 (452)
T ss_dssp             CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence            147899999999999   99999999998887664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.12  E-value=0.0023  Score=64.31  Aligned_cols=120  Identities=14%  Similarity=0.156  Sum_probs=83.3

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEE
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSL  456 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L  456 (522)
                      +..+..++.+.+..+... .....|..+..++.+....+.+.. ..|..+.+|+.+.+..+ ++.++      +.+|+.+
T Consensus       249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            445566666666655433 444556666666666555443221 24677788888888654 54443      5788888


Q ss_pred             EcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451        457 KLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN  507 (522)
Q Consensus       457 ~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  507 (522)
                      ++..+ ++.++.  |.++.+|+.+.+..| ++.++..+|.+|++|+.+.+..+
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88644 777765  888999999999877 88888889999999999999765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.10  E-value=0.0036  Score=67.40  Aligned_cols=166  Identities=7%  Similarity=-0.108  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHH-HHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDREL-KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL-~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++...|+++|..+|.++.+|..-..++...+.          .+++. .+++.++..+|++..+|..-..+.+..   ++
T Consensus       327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~---~~  393 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN---TK  393 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CC
Confidence            35678999999999999999998888887765          35776 899999999999999999888888887   77


Q ss_pred             hHHHHHHHHHHHhhc-----------CC-----------CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCcchHh
Q psy13451        122 YEKELELCNYYLELD-----------ER-----------NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA-NFSNYSAW  178 (522)
Q Consensus       122 ~~~el~~~~~~l~~d-----------~k-----------n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~-~~~n~saW  178 (522)
                      ++++-+.++++++.-           |.           +-.+|..-.-+..+.+. .+.+-+.+.++++. .+.....|
T Consensus       394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~ly  472 (679)
T 4e6h_A          394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIY  472 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHH
Confidence            899999999999752           43           23468777777666655 57788888999987 55556777


Q ss_pred             hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh-hHHHHHhcc
Q psy13451        179 HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW-FYQRWLLGE  233 (522)
Q Consensus       179 ~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W-~y~~~ll~~  233 (522)
                      ..-+.+-....           +..+.+...+..++...|++...| .|..++...
T Consensus       473 i~~A~lE~~~~-----------~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~  517 (679)
T 4e6h_A          473 LENAYIEYHIS-----------KDTKTACKVLELGLKYFATDGEYINKYLDFLIYV  517 (679)
T ss_dssp             HHHHHHHHTTT-----------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-----------CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence            65444333331           235788889999999999999999 666665543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.03  E-value=0.024  Score=58.40  Aligned_cols=166  Identities=13%  Similarity=-0.028  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAP  120 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~  120 (522)
                      ++|+..+.+++..+  +..++...+.++....-.      ..-+++++..+++++..  .+..+++..+.+..... ...
T Consensus       204 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~  273 (490)
T 2xm6_A          204 AISAQWYRKSATSG--DELGQLHLADMYYFGIGV------TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK  273 (490)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC
Confidence            56677777766543  455666666655541000      00156777777777764  45677777787777621 137


Q ss_pred             ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCC
Q psy13451        121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH-----KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNH  195 (522)
Q Consensus       121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~-----~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~  195 (522)
                      ++++++.+++++++.  .+..++...+.+....     +. +++++.++.++++.+  +..||.+.+.+.....      
T Consensus       274 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g------  342 (490)
T 2xm6_A          274 EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQG--DATAQANLGAIYFRLG------  342 (490)
T ss_dssp             CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSC------
T ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC------
Confidence            788999999998865  4567888888887765     33 688899999988864  5678888888776541      


Q ss_pred             CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451        196 LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE  233 (522)
Q Consensus       196 ~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~  233 (522)
                         ....++++++++.+++..  ++..+|++.+.++..
T Consensus       343 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  375 (490)
T 2xm6_A          343 ---SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ  375 (490)
T ss_dssp             ---CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             ---CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence               125788999999999987  678899998888866

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00052  Score=61.47  Aligned_cols=60  Identities=8%  Similarity=0.042  Sum_probs=34.4

Q ss_pred             CcccEEEcCCCCCCCCCC------CCCCCCCCEEEccCC---CCCCCC----hhhhcCCCCccEEEecCCCCc
Q psy13451        451 VYFQSLKLTHCSLSSLHV------FPHLPSLESLDVSHN---AIDHIE----DSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~------l~~~~~L~~L~Ls~N---~l~~~~----~~~l~~l~~L~~L~L~~N~l~  510 (522)
                      ..|+.|+|++|.|++.+.      +.....|+.|+|++|   .+....    ...+..-+.|..|+++.|.+.
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            345555555555544321      555667888888765   333321    234556677888888776544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.03  E-value=0.012  Score=60.09  Aligned_cols=169  Identities=11%  Similarity=-0.054  Sum_probs=133.7

Q ss_pred             CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHH-HhcCC
Q psy13451         41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD-HISRA  119 (522)
Q Consensus        41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~-~l~~~  119 (522)
                      .++|+..+.+++..+|....+++.-+.++......      ..-+++++..++++.   |.+..+++..+.++. .. ..
T Consensus       195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~------~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~-~~  264 (452)
T 3e4b_A          195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG------TPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP-EL  264 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS------SCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG-GG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC-CC
Confidence            47899999999999999999988888888654110      001688999999988   999999999999843 22 35


Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCC
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL  196 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~  196 (522)
                      +++++++.++.++++.+  +..++..-+.+...-   ...++++++++.++.   +.+..|+++.+.+...=..      
T Consensus       265 ~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g------  333 (452)
T 3e4b_A          265 GDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL------  333 (452)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT------
T ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC------
Confidence            89999999999998654  888999999988742   123689999999999   8899999999987765211      


Q ss_pred             ccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       197 ~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                        ....+++++.++.+|..  +++..+.+..+.+...+
T Consensus       334 --~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G  367 (452)
T 3e4b_A          334 --GKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQG  367 (452)
T ss_dssp             --SSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSC
T ss_pred             --CCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhC
Confidence              11468999999999986  57788888888777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.00  E-value=0.0047  Score=54.70  Aligned_cols=132  Identities=8%  Similarity=-0.071  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh--
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLR------NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA--   98 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~------~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--   98 (522)
                      ...........|++ ++|+..+.+++.      ..|....+++..+.+....+.          +++++..+..++..  
T Consensus        29 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~   97 (203)
T 3gw4_A           29 RFMLGYVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN----------WDAARRCFLEERELLA   97 (203)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHH
Confidence            33444455566766 789999999999      566778889999999999887          68888888888886  


Q ss_pred             -CCC----CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451         99 -QPK----SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVAPLKELNYSTEK  167 (522)
Q Consensus        99 -~pk----~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~~~~el~~~~~~  167 (522)
                       .|.    ...++...+++....   +++++++..++++++..++.-.      ++...+.+....+. ++++++++.++
T Consensus        98 ~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a  173 (203)
T 3gw4_A           98 SLPEDPLAASANAYEVATVALHF---GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRA  173 (203)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HcCccHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHH
Confidence             442    346688889998888   8999999999999986543322      23667777778887 68999999999


Q ss_pred             HHhcCC
Q psy13451        168 IEANFS  173 (522)
Q Consensus       168 i~~~~~  173 (522)
                      ++.-..
T Consensus       174 l~~~~~  179 (203)
T 3gw4_A          174 RDIFAE  179 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            886443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.97  E-value=0.0028  Score=63.68  Aligned_cols=103  Identities=17%  Similarity=0.342  Sum_probs=66.2

Q ss_pred             cccCCCCCCccEEEcCCCCCCCC--CCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCC
Q psy13451        404 LRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLP  473 (522)
Q Consensus       404 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~  473 (522)
                      ..+|.++..|+.+.+..+.. .+  ..|..++.|+.+.+. +.++.++      +.+|+.+.+..+ ++.++.  |.++.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            34566667777776654432 22  246666677777665 3344333      456777777543 555544  77788


Q ss_pred             CCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451        474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  510 (522)
                      +|+.+.+..+ ++.+...+|.+|.+|+.+.+.+|...
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            8888888544 77777778888888888888877543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.96  E-value=0.0033  Score=62.69  Aligned_cols=121  Identities=12%  Similarity=0.222  Sum_probs=79.3

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ  454 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~  454 (522)
                      +.....|+.+.+..+ +.......|.++..|+.+.+..+ ++.++  .|..+.+|+.+.+..+ +..++      +.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            444556666666544 33244456667777777777655 44443  4667777777777543 33332      56778


Q ss_pred             EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451        455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN  507 (522)
Q Consensus       455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  507 (522)
                      .+.+.++.++.++.  |.++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88887777777665  777888888888644 67777777888888887777544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.80  E-value=0.0052  Score=61.21  Aligned_cols=113  Identities=17%  Similarity=0.256  Sum_probs=88.4

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ  454 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~  454 (522)
                      +..+..|+.+.+..+ ++......|.++.+|+.+.+..+ ++.++  .|..+++|+.+.+.++.++.++      +.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            667888999999776 55455677888899999998654 55554  5888999999999988887664      57899


Q ss_pred             EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCc
Q psy13451        455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC  499 (522)
Q Consensus       455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L  499 (522)
                      .+.|..+ ++.++.  |.++.+|+.+.+..+ ++.+...+|.+++.+
T Consensus       314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            9999754 777765  899999999999755 777777788887544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.72  E-value=0.013  Score=56.38  Aligned_cols=159  Identities=8%  Similarity=-0.053  Sum_probs=121.5

Q ss_pred             cCCCCHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC------CCccchhh
Q psy13451         37 NQEYDDEALSLTSEVLRNIP--DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP------KSYGTWFQ  108 (522)
Q Consensus        37 ~~~~~~eal~~~~~~l~~np--~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------k~y~~W~~  108 (522)
                      .|++ ++|+..+.+.|..+|  ++..+.-..-.++..+++          .+.+.+.++.+.+.+|      +...+.--
T Consensus       113 ~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r----------~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          113 LGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN----------VSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             cCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            3555 899999999999997  899999999999999988          6899999999999999      44445555


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhhcCC--Cc-chhhHHHHHHHhcCCCCHHHHHHHHHHHHh----------cCCcc
Q psy13451        109 RCYVLDHISRAPNYEKELELCNYYLELDER--NF-HCWDYRRYVTDRHKVAPLKELNYSTEKIEA----------NFSNY  175 (522)
Q Consensus       109 R~~il~~l~~~~~~~~el~~~~~~l~~d~k--n~-~aW~~R~~~l~~~~~~~~~el~~~~~~i~~----------~~~n~  175 (522)
                      -.|+-... +...+++++.+++.+.+..|.  +. -.|+    +...++. ++++-+.++.+++.          +|.|.
T Consensus       182 ea~v~l~~-g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          182 ESYIKFAT-NKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             HHHHHHHH-TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             HHHHHHHh-CCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            57777666 445789999999999988886  22 2233    5566677 67777777777766          58898


Q ss_pred             hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhH
Q psy13451        176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY  226 (522)
Q Consensus       176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y  226 (522)
                      .+..+...+-..+            +.  ++-+++.++...+|+++-+=.|
T Consensus       256 ~~LaN~i~l~~~l------------gk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          256 TFLANQITLALMQ------------GL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHHHHHHHHHHT------------TC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHh------------Ch--HHHHHHHHHHHhCCCChHHHHH
Confidence            8887765555555            22  4668889999999999765544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.68  E-value=0.0092  Score=46.36  Aligned_cols=74  Identities=8%  Similarity=0.018  Sum_probs=54.6

Q ss_pred             CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      +|++..+|..++.++...+...       ...++...++++|+.+|++..++...+.+....   ++|++++..++++++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~-------~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~---g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQA-------MTDEVSLLLEQALQLEPYNEAALSLIANDHFIS---FRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTC-------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Confidence            5777888888888775432210       126777788888888888888888888877777   788888888888888


Q ss_pred             hcCC
Q psy13451        135 LDER  138 (522)
Q Consensus       135 ~d~k  138 (522)
                      .+|.
T Consensus        72 ~~p~   75 (93)
T 3bee_A           72 SNDP   75 (93)
T ss_dssp             CCCT
T ss_pred             hCCC
Confidence            8877

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.67  E-value=0.0027  Score=52.89  Aligned_cols=54  Identities=20%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             EEEecCCCcc--cccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCC
Q psy13451        369 ITNLSSLQLT--SIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSL  423 (522)
Q Consensus       369 ~L~ls~n~l~--~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  423 (522)
                      .++.++++|+  .+|. .-.++|+.|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5677777776  6664 1223566666666666644444555555666666655544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.59  E-value=0.024  Score=55.75  Aligned_cols=152  Identities=11%  Similarity=-0.056  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-----chhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-----TWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-----~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      .+...++.+....+.          +++++..++.++...|....     ++...+.+....   +++++++..+.+++.
T Consensus        15 ~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~   81 (373)
T 1hz4_A           15 EFNALRAQVAINDGN----------PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK---GELTRSLALMQQTEQ   81 (373)
T ss_dssp             HHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC----------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHH
Confidence            345566666666666          68999999999998887643     566677777777   899999999999999


Q ss_pred             hcCCCcch------hhHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451        135 LDERNFHC------WDYRRYVTDRHKVAPLKELNYSTEKIEANF--------SNYSAWHYRSKLLPLLYPDPNNHLPIEQ  200 (522)
Q Consensus       135 ~d~kn~~a------W~~R~~~l~~~~~~~~~el~~~~~~i~~~~--------~n~saW~~r~~ll~~l~~~~~~~~~~~~  200 (522)
                      ..++.-..      ..+.+.+....+. +++++++++++++..+        ....++...+.+....            
T Consensus        82 ~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------  148 (373)
T 1hz4_A           82 MARQHDVWHYALWSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW------------  148 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT------------
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh------------
Confidence            87765443      4567778888887 7899999999998752        3344566677777666            


Q ss_pred             hHHHHHHHHHHHHHhcCCCCcc-----hhhHHHHHhccCCCc
Q psy13451        201 DKYVNEFSMVESAVFTEPKDQS-----AWFYQRWLLGERTSP  237 (522)
Q Consensus       201 ~~~~~el~~~~~ai~~~p~~~s-----~W~y~~~ll~~~~~~  237 (522)
                      +.++++..++.+++...|....     ++.....+....++.
T Consensus       149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~  190 (373)
T 1hz4_A          149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL  190 (373)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence            7899999999999999886432     344444444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.56  E-value=0.053  Score=58.30  Aligned_cols=175  Identities=8%  Similarity=-0.057  Sum_probs=124.5

Q ss_pred             cCCCCHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH----HhCCC----------
Q psy13451         37 NQEYDDEAL-SLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL----LAQPK----------  101 (522)
Q Consensus        37 ~~~~~~eal-~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l----~~~pk----------  101 (522)
                      .|.. ++|. +.+.+++..+|....+|-.-..+....+.   .+...++++..+.......    ...|.          
T Consensus       356 ~~~~-~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~---~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~  431 (679)
T 4e6h_A          356 KNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK---IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS  431 (679)
T ss_dssp             HSCC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCcH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence            3443 5787 99999999999999999888888777765   3444445555554432211    12353          


Q ss_pred             -CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh-cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        102 -SYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL-DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       102 -~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~-d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                       +..+|..-..+..+.   +..+.+...+.++++. .+...+.|...+.+-...+...+.+...++++++..|.+...|.
T Consensus       432 ~~~~vWi~y~~~erR~---~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~  508 (679)
T 4e6h_A          432 KLTYVYCVYMNTMKRI---QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN  508 (679)
T ss_dssp             HHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence             345888888777777   7788999999999998 55668888876666656655468999999999999999999884


Q ss_pred             HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC---CcchhhHHHHH
Q psy13451        180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK---DQSAWFYQRWL  230 (522)
Q Consensus       180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~---~~s~W~y~~~l  230 (522)
                      .-..+....            +..+.+=..+++|+...|.   ....|....-.
T Consensus       509 ~y~~fe~~~------------~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f  550 (679)
T 4e6h_A          509 KYLDFLIYV------------NEESQVKSLFESSIDKISDSHLLKMIFQKVIFF  550 (679)
T ss_dssp             HHHHHHHHH------------TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhC------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            333333333            5678888999999999883   34566554333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.52  E-value=0.0071  Score=51.43  Aligned_cols=100  Identities=17%  Similarity=0.025  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc-C-CCcchhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451         88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD-E-RNFHCWDYRRYVTDRHKVAPLKELNYST  165 (522)
Q Consensus        88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d-~-kn~~aW~~R~~~l~~~~~~~~~el~~~~  165 (522)
                      .-+.+...+..+|.+..+.+.=+|+|-+.....+.++.+.+++.+++.+ | ++-.|++|.+...-+++. +++++.+++
T Consensus        17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~-Y~~A~~y~~   95 (152)
T 1pc2_A           17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence            3344455566788899999999999999722347889999999999999 7 778999999999999988 799999999


Q ss_pred             HHHHhcCCcchHhhHHHHHhchh
Q psy13451        166 EKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       166 ~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      ++++.+|.|-.|-+-+..+-.++
T Consensus        96 ~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999987766555444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.52  E-value=0.054  Score=61.82  Aligned_cols=135  Identities=10%  Similarity=-0.013  Sum_probs=84.8

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL  135 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~  135 (522)
                      .+...+|...+......++          +++|++.+.++     +++.+|...+.+..++   ++|++.++++..+.+.
T Consensus      1102 vn~p~vWsqLAKAql~~G~----------~kEAIdsYiKA-----dD~say~eVa~~~~~l---GkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGM----------VKEAIDSYIKA-----DDPSSYMEVVQAANTS---GNWEELVKYLQMARKK 1163 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhc-----CChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhh
Confidence            4667888888888888777          68888888654     7788888888888887   8888888888887776


Q ss_pred             cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451        136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF  215 (522)
Q Consensus       136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~  215 (522)
                      ++.. .+=.+-++++.++++ + ++++.+   +  +..|...|...+..+...            +.++++..++.+|  
T Consensus      1164 ~~e~-~Idt~LafaYAKl~r-l-eele~f---I--~~~n~ad~~~iGd~le~e------------g~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A         1164 ARES-YVETELIFALAKTNR-L-AELEEF---I--NGPNNAHIQQVGDRCYDE------------KMYDAAKLLYNNV-- 1221 (1630)
T ss_pred             cccc-cccHHHHHHHHhhcC-H-HHHHHH---H--hCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHhh--
Confidence            6332 222246666666644 2 234433   2  333445666555555544            5566666666654  


Q ss_pred             cCCCCcchhhHHHHHhccCCC
Q psy13451        216 TEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       216 ~~p~~~s~W~y~~~ll~~~~~  236 (522)
                            +.|......+-+.++
T Consensus      1222 ------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A         1222 ------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred             ------hHHHHHHHHHHHhCC
Confidence                  355555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.51  E-value=0.018  Score=44.71  Aligned_cols=67  Identities=12%  Similarity=-0.040  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS  102 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~  102 (522)
                      ..+..++.....+..+++|...+.++|.++|++..++...+.+....+.          +++++...+.++..+|.+
T Consensus        10 ~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~----------y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           10 AAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR----------FQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCC
Confidence            3344455555566779999999999999999999999999999999888          899999999999999993

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.50  E-value=0.012  Score=58.96  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=80.0

Q ss_pred             CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC-CCCCCCCCcCEEEccCCCCCcc---ccCcccEEEcCCCC
Q psy13451        387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCS  462 (522)
Q Consensus       387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ls~N~l~~~---~~~~L~~L~Ls~n~  462 (522)
                      ..|+.+.+..+. +......|..+..++.+.+..+...-. ..|..+..++.+....+.+...   .+.+|+.+.+..+ 
T Consensus       230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred             CCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence            455555554332 223334566667777777766533211 2466777777776665544321   2578888888754 


Q ss_pred             CCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451        463 LSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN  507 (522)
Q Consensus       463 l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  507 (522)
                      ++.++.  |..+.+|+.++|..+ ++.++..+|.+|.+|+.+.+..|
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            666665  889999999999754 88888889999999999999776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.24  E-value=0.22  Score=47.04  Aligned_cols=172  Identities=9%  Similarity=-0.072  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc--c----------------ccHHHHHHHHHHHHHHHHHHHHh-----
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKA--T----------------LAEEELHELVDRELKLTKDCLLA-----   98 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~--~----------------~~~~~~~~~~~~eL~~~~~~l~~-----   98 (522)
                      +-.|.+++.++..+|+|...---=......-..  .                ..++...+++..+.+....+|..     
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~  128 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF  128 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            345889999999999997654433322222100  0                01112244555555555555543     


Q ss_pred             -------------------CCCCccchhhHHHHHHHhcC--CC------ChHHHHHHHHHHHhhcCC--CcchhhHHHHH
Q psy13451         99 -------------------QPKSYGTWFQRCYVLDHISR--AP------NYEKELELCNYYLELDER--NFHCWDYRRYV  149 (522)
Q Consensus        99 -------------------~pk~y~~W~~R~~il~~l~~--~~------~~~~el~~~~~~l~~d~k--n~~aW~~R~~~  149 (522)
                                         +|++..+++..+-+......  ..      ...+.....++++++||+  +-.||.+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l  208 (301)
T 3u64_A          129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF  208 (301)
T ss_dssp             HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence                               34445555555555543211  11      257888999999999999  55699999999


Q ss_pred             HHhc-----CCCCHHHHHHHHHHHHhcCC-cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcch
Q psy13451        150 TDRH-----KVAPLKELNYSTEKIEANFS-NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSA  223 (522)
Q Consensus       150 l~~~-----~~~~~~el~~~~~~i~~~~~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~  223 (522)
                      ...+     +. .+++-+.++++++++|. |..++.+-+..+...           .+.+++...++++++..+|+....
T Consensus       209 Y~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~-----------~gd~~~a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          209 YAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIP-----------LNNRAGFDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT-----------TTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred             HHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHcCCCCCCCC
Confidence            9986     33 58999999999999996 488887777655442           156888999999999999986444


Q ss_pred             hh
Q psy13451        224 WF  225 (522)
Q Consensus       224 W~  225 (522)
                      |.
T Consensus       277 ~~  278 (301)
T 3u64_A          277 NK  278 (301)
T ss_dssp             CH
T ss_pred             hh
Confidence            53

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.16  E-value=0.066  Score=50.54  Aligned_cols=157  Identities=8%  Similarity=-0.078  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc-cccHHHHHHHHHHH
Q psy13451         17 RSAKVKWYHNLMETIFEKRKNQ--EY-----DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKA-TLAEEELHELVDRE   88 (522)
Q Consensus        17 ~~~k~~~y~~~~~~~~~~~~~~--~~-----~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~-~~~~~~~~~~~~~e   88 (522)
                      +....+-|....+..+.-....  .+     +.+.-+.-..+-..+|++..++.+.+.+....-. ....=........+
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            3344566776666655433221  11     1111234455677899999999999999877422 11000123346889


Q ss_pred             HHHHHHHHHhCCC--CccchhhHHHHHHHhcC--CCChHHHHHHHHHHHhhcCC-CcchhhHHHHHHHhc-CCCCHHHHH
Q psy13451         89 LKLTKDCLLAQPK--SYGTWFQRCYVLDHISR--APNYEKELELCNYYLELDER-NFHCWDYRRYVTDRH-KVAPLKELN  162 (522)
Q Consensus        89 L~~~~~~l~~~pk--~y~~W~~R~~il~~l~~--~~~~~~el~~~~~~l~~d~k-n~~aW~~R~~~l~~~-~~~~~~el~  162 (522)
                      ....+++++++|+  .-.+|...+-+...+.+  .++.+++-++++++++++|. |..+..+-+..+... +. .++...
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~  261 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDE  261 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHH
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHH
Confidence            9999999999999  56699999999988721  36899999999999999996 588888888877664 54 577789


Q ss_pred             HHHHHHHhcCCc
Q psy13451        163 YSTEKIEANFSN  174 (522)
Q Consensus       163 ~~~~~i~~~~~n  174 (522)
                      ++++++..+|+-
T Consensus       262 ~L~kAL~a~p~~  273 (301)
T 3u64_A          262 ALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCGGG
T ss_pred             HHHHHHcCCCCC
Confidence            999999988874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.037  Score=55.42  Aligned_cols=167  Identities=11%  Similarity=0.013  Sum_probs=112.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINS-----------------LWNYRKEVLLHMKATLAEEELHELVDRELKLTK   93 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t-----------------~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~   93 (522)
                      .....++|+| ++|++.+..++..+|+...                 +....+.++...+.          ++++++.+.
T Consensus        11 a~~l~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~----------~~~a~~~~~   79 (434)
T 4b4t_Q           11 ARRLVNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA----------KDKLREFIP   79 (434)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC----------HHHHHHHHH
Confidence            3344556666 6788888888888887543                 45666777777766          688888888


Q ss_pred             HHHHhCCCCccchhhH--HHHHHHh-cCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         94 DCLLAQPKSYGTWFQR--CYVLDHI-SRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        94 ~~l~~~pk~y~~W~~R--~~il~~l-~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      .++...++...+-..+  .-++..+ ...+.+++++.++.+++...++...      ++..-+.+....+. +.++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l  158 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALI  158 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHH
Confidence            8888766654432221  1112222 1246789999999999986654432      45556666777777 68999999


Q ss_pred             HHHHHhc------CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        165 TEKIEAN------FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       165 ~~~i~~~------~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                      .+++..-      +....++...+.+...+            +.++++..++++++.+.|...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          159 NDLLREFKKLDDKPSLVDVHLLESKVYHKL------------RNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             HHHHHHHTTSSCSTHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHHHhhcCC
Confidence            8888752      22334666677766666            788999999999987765443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.01  E-value=0.0031  Score=56.40  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             CcccEEEcCCCCCCCCCC------CCCCCCCCEEEccCCCCCCCC----hhhhcCCCCccEEEecCC
Q psy13451        451 VYFQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAIDHIE----DSVFAKYEACVQVILTGN  507 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~------l~~~~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N  507 (522)
                      ..|+.|+|++|.|.+...      +...+.|++|+|+.|.|++..    ...+..-+.|+.|+|++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            456666666666655331      456678999999999999864    345666678999999865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.72  E-value=0.061  Score=45.65  Aligned_cols=96  Identities=14%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhC-C-CCccchhhHHHHHHHhcCCCChHH
Q psy13451         47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQ-P-KSYGTWFQRCYVLDHISRAPNYEK  124 (522)
Q Consensus        47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p-k~y~~W~~R~~il~~l~~~~~~~~  124 (522)
                      .|...+..+|...++...=+.+|.+...   +    ..+++.+.+++.+++.+ | +.-.++++.+-...++   ++|++
T Consensus        20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~---~----~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl---~~Y~~   89 (152)
T 1pc2_A           20 KFQSEKAAGSVSKSTQFEYAWCLVRSKY---N----DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL---KEYEK   89 (152)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHTCSS---H----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---SCHHH
T ss_pred             HHHHHHccCCCcHHHHHHHHHHHHcCCC---H----HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc---cCHHH
Confidence            3444455667666776666777776442   1    12589999999999998 7 5677888888888777   99999


Q ss_pred             HHHHHHHHHhhcCCCcchhhHHHHHHHh
Q psy13451        125 ELELCNYYLELDERNFHCWDYRRYVTDR  152 (522)
Q Consensus       125 el~~~~~~l~~d~kn~~aW~~R~~~l~~  152 (522)
                      ++.+++++|+++|.|-+|-.-+.-+-+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987666555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.47  E-value=0.098  Score=50.19  Aligned_cols=156  Identities=9%  Similarity=-0.046  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC--CCccchhhHHHHHHHhcCCCC
Q psy13451         44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP--KSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        44 al~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--k~y~~W~~R~~il~~l~~~~~  121 (522)
                      |+..+++++...+...++..+-+.++...+.          ++++|+.+.+.|..+|  .+..+..-...++.++   ++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~----------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~---~r  151 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGD----------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN---NN  151 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC---CC
Confidence            4555666666655667777888888888877          7999999999999997  7888888888888888   88


Q ss_pred             hHHHHHHHHHHHhhcCC------CcchhhHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCc--chHhhHHHHHhchhCCCC
Q psy13451        122 YEKELELCNYYLELDER------NFHCWDYRRYVTDRHK-VAPLKELNYSTEKIEANFSN--YSAWHYRSKLLPLLYPDP  192 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~k------n~~aW~~R~~~l~~~~-~~~~~el~~~~~~i~~~~~n--~saW~~r~~ll~~l~~~~  192 (522)
                      .+.+.+.+.++.+.+|.      ..-...--+|+--..+ ..+.+++.+++++.+..|..  ......   +...+    
T Consensus       152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~----  224 (310)
T 3mv2_B          152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ----  224 (310)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH----
T ss_pred             HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc----
Confidence            89999999999999983      2222222355554444 22689999999998887762  112222   33344    


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhc----------CCCCcchhhHH
Q psy13451        193 NNHLPIEQDKYVNEFSMVESAVFT----------EPKDQSAWFYQ  227 (522)
Q Consensus       193 ~~~~~~~~~~~~~el~~~~~ai~~----------~p~~~s~W~y~  227 (522)
                              ++++++-+.++.++..          +|+|..+-...
T Consensus       225 --------g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          225 --------RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             --------TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence                    7888888888877776          57787776333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.96  E-value=0.045  Score=54.69  Aligned_cols=120  Identities=13%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ  454 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~  454 (522)
                      |..+..|+.+.+..+..+ .....|.++..|+.+.+. +.++.++  .|..+.+|+.+.+..+ ++.+.      +.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            778899999999876554 556788899999999996 4566665  5889999999999765 55443      67899


Q ss_pred             EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCC
Q psy13451        455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV  509 (522)
Q Consensus       455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  509 (522)
                      .+.+..+ ++.++.  |.++.+|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            9999654 777765  9999999999999875432   4567788899998877654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.90  E-value=0.11  Score=53.59  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL   96 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l   96 (522)
                      +.+++.+...+.+|.| ++|+.++.++|.+        +|+..++.+.-+.++...++          +++|+.+++++|
T Consensus       310 ~~~le~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL  378 (490)
T 3n71_A          310 KDTLEKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA----------YEEASHYARRMV  378 (490)
T ss_dssp             HHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHH
Confidence            3566677777888888 8899999999987        55666788888888888887          566666666666


Q ss_pred             H--------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q psy13451         97 L--------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD  136 (522)
Q Consensus        97 ~--------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d  136 (522)
                      .        .+|.-....+.-+.++...   ++++++..++.+++++-
T Consensus       379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~---G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          379 DGYMKLYHHNNAQLGMAVMRAGLTNWHA---GHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence            5        4556667777888888887   89999999999998764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.53  E-value=0.16  Score=51.34  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL   97 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~   97 (522)
                      ..+..+......|.| ++|+.++.++|.+        +|+..+..+.-+.+....|+          +++|+.+++++|.
T Consensus       300 ~~le~~~~~~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL~  368 (433)
T 3qww_A          300 NVIEEFRRAKHYKSP-SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD----------WEGALKYGQKIIK  368 (433)
T ss_dssp             HHHHHHHHHTTTSCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCH-HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHH
Confidence            444444444555666 7899999999986        45556778888888888887          5666666666665


Q ss_pred             --------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451         98 --------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE  137 (522)
Q Consensus        98 --------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~  137 (522)
                              .+|.-...++.-+.++...   +++++++.++++++++-.
T Consensus       369 i~~~~lG~~Hp~~a~~l~nLa~~~~~q---g~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          369 PYSKHYPVYSLNVASMWLKLGRLYMGL---ENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHH
Confidence                    4666677888888888888   899999999999997653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.05  E-value=0.72  Score=38.06  Aligned_cols=115  Identities=9%  Similarity=-0.108  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh---cCCCCHHH
Q psy13451         84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR---HKVAPLKE  160 (522)
Q Consensus        84 ~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~---~~~~~~~e  160 (522)
                      -+++++..+.++.........    .+.+....   ...++++.++.++.+.  .+..++..-+.+...   ....++++
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g---~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQ---INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTT---SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcC---CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            368999999999987744433    55555554   6678899999999987  678899999988877   12336899


Q ss_pred             HHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451        161 LNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE  217 (522)
Q Consensus       161 l~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~  217 (522)
                      +++++++.+.  .+..|+++.+.+...=...        ...++++++++.+|....
T Consensus        81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~--------~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGL--NDQDGCLILGYKQYAGKGV--------VKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHTSSS--------CCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHCCCCC--------CcCHHHHHHHHHHHHHCC
Confidence            9999999987  6788888888877652111        157899999999999874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.87  E-value=0.1  Score=52.66  Aligned_cols=117  Identities=9%  Similarity=-0.103  Sum_probs=68.2

Q ss_pred             cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHH
Q psy13451        104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSK  183 (522)
Q Consensus       104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~  183 (522)
                      .+|..-|-.+...   +.|+++..+|+++        ..|...+-++-+++. ++++++.+.++     .+..+|..-..
T Consensus       123 ~a~~~IGd~~~~~---g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~  185 (449)
T 1b89_A          123 AHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCF  185 (449)
T ss_dssp             -----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHh--------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHH
Confidence            3666666555555   6677777777766        466677777777776 57777777776     35556655433


Q ss_pred             HhchhCCCCCC------C------------CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCc
Q psy13451        184 LLPLLYPDPNN------H------------LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP  237 (522)
Q Consensus       184 ll~~l~~~~~~------~------------~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~  237 (522)
                      +......-..+      .            .-...+.+++++.++++++..+|.+..+|.....+..+-.+.
T Consensus       186 aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~  257 (449)
T 1b89_A          186 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ  257 (449)
T ss_dssp             HHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence            33322100000      0            001226788999999999999999999999999988876553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.66  E-value=0.81  Score=37.74  Aligned_cols=112  Identities=5%  Similarity=-0.141  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAP  120 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~  120 (522)
                      ++|+..+.++...+.....    -+.+......          .++++..++++...  .+..+++.-+.++..-. ...
T Consensus        12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~----------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A           12 KKAIQYYVKACELNEMFGC----LSLVSNSQIN----------KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             HHHHHHHHHHHHTTCTTHH----HHHHTCTTSC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHHHHHHcCCCHhhh----HHHHHHcCCC----------HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc
Confidence            6788888888888754443    4444333222          35589999999886  67889999999988721 147


Q ss_pred             ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhc
Q psy13451        121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEAN  171 (522)
Q Consensus       121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~  171 (522)
                      ++++++.+++++.+.  .+..+...-+.+...-   ...++++++++.++.+..
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            899999999999986  6788888888888871   233689999999999874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.18  E-value=0.16  Score=51.19  Aligned_cols=142  Identities=9%  Similarity=0.065  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451         60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN  139 (522)
Q Consensus        60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn  139 (522)
                      .+|+.-|..+...+.          ++++..++..+        ..|....-++.++   ++++++++++.++     .+
T Consensus       123 ~a~~~IGd~~~~~g~----------yeeA~~~Y~~a--------~n~~~LA~~L~~L---g~yq~AVea~~KA-----~~  176 (449)
T 1b89_A          123 AHIQQVGDRCYDEKM----------YDAAKLLYNNV--------SNFGRLASTLVHL---GEYQAAVDGARKA-----NS  176 (449)
T ss_dssp             --------------C----------TTTHHHHHHHT--------TCHHHHHHHHHTT---TCHHHHHHHHHHH-----TC
T ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHh--------hhHHHHHHHHHHh---ccHHHHHHHHHHc-----CC
Confidence            478888877777776          78888988877        5788999999999   9999999999999     35


Q ss_pred             cchhhHHHHHH------------------------------HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451        140 FHCWDYRRYVT------------------------------DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY  189 (522)
Q Consensus       140 ~~aW~~R~~~l------------------------------~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~  189 (522)
                      ..+|.--..+.                              ++.|. +++.+.+++..+..++....+|..-+.+..+. 
T Consensus       177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~-~eEai~lLe~aL~le~ah~~~ftel~il~~ky-  254 (449)
T 1b89_A          177 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY-FEELITMLEAALGLERAHMGMFTELAILYSKF-  254 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-
T ss_pred             chhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCC-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-
Confidence            66665533333                              33344 67888999999999999999999999888877 


Q ss_pred             CCCCCCCccchhHHHHHHHHHHHHHhcCC-----CCcchhhHHHHHhccCCCcc
Q psy13451        190 PDPNNHLPIEQDKYVNEFSMVESAVFTEP-----KDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       190 ~~~~~~~~~~~~~~~~el~~~~~ai~~~p-----~~~s~W~y~~~ll~~~~~~~  238 (522)
                               ..+++.+.++.+...+.+.|     ++.-.|.=..++..+-+...
T Consensus       255 ---------~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          255 ---------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             ---------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             ---------CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence                     34799999999999999999     99999998888887666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=92.93  E-value=0.3  Score=49.37  Aligned_cols=98  Identities=6%  Similarity=0.096  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy13451         25 HNLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL   96 (522)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l   96 (522)
                      +.+...+.+.+++|.| ++|++.+.++|.+        +|...++.+.-+.++...++          +++|+.+++++|
T Consensus       288 ~~ll~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~----------~~eA~~~~~~~L  356 (429)
T 3qwp_A          288 QESLKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL----------LEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHH
Confidence            4555666677788876 8899999999976        44455677777777777777          566666666666


Q ss_pred             H--------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q psy13451         97 L--------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD  136 (522)
Q Consensus        97 ~--------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d  136 (522)
                      .        .+|.-...++.-+.+....   +++++++.++.+++++-
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~---g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQ---GMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Confidence            5        4555556777778888877   88999999999998754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.43  E-value=0.42  Score=37.35  Aligned_cols=70  Identities=14%  Similarity=-0.029  Sum_probs=52.1

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhhc-------CCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        110 CYVLDHISRAPNYEKELELCNYYLELD-------ERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       110 ~~il~~l~~~~~~~~el~~~~~~l~~d-------~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      |......   ++|.+++.+++.+++..       +....++.+-+.+..+++. +++++.+++++++.+|.+..+.+++.
T Consensus        12 G~~~~~~---~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           12 GKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHc---cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            4444444   78888888888888753       2345667777888888887 68888888888888888888877766


Q ss_pred             H
Q psy13451        183 K  183 (522)
Q Consensus       183 ~  183 (522)
                      +
T Consensus        88 ~   88 (104)
T 2v5f_A           88 Y   88 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.19  E-value=0.42  Score=37.35  Aligned_cols=64  Identities=16%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhC-------CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQ-------PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTD  151 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~-------pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~  151 (522)
                      +..+...++.+++..       +....++.+-+.++.++   +++++++..++++++.+|.+-.+...++++-.
T Consensus        21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~   91 (104)
T 2v5f_A           21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence            788888888888753       34567788888888888   89999999999999999999888777764443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.60  E-value=4.5  Score=41.41  Aligned_cols=125  Identities=9%  Similarity=0.012  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH---------
Q psy13451         43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL---------  113 (522)
Q Consensus        43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il---------  113 (522)
                      ++...++++|...|....+|..-...+...+.          .+++...++.++.. |++...|..-....         
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~----------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l  265 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ----------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHH
Confidence            46789999999999999999988888877665          58888999999999 99998886433221         


Q ss_pred             -HHhc---------------------------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451        114 -DHIS---------------------------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYST  165 (522)
Q Consensus       114 -~~l~---------------------------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~  165 (522)
                       ....                           ..+..+.+...++++ ...+..+|.|.....+-...+...+.+.+.++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife  344 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS  344 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence             0000                           012345666777777 43334667776555444444433577888888


Q ss_pred             HHHHhcCCcchHhh
Q psy13451        166 EKIEANFSNYSAWH  179 (522)
Q Consensus       166 ~~i~~~~~n~saW~  179 (522)
                      .+++..|++...|.
T Consensus       345 ~al~~~~~~~~~~~  358 (493)
T 2uy1_A          345 SGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHHHCCCCHHHHH
Confidence            88888777665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.31  E-value=0.82  Score=45.37  Aligned_cols=170  Identities=11%  Similarity=-0.011  Sum_probs=102.6

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------ccchh
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------YGTWF  107 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------y~~W~  107 (522)
                      ....|++ ++|++.+..++.+.+....+-..+ .+...++.-.   ....-++.++.++..++...++.      ..++.
T Consensus        65 y~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  139 (434)
T 4b4t_Q           65 YVTMGAK-DKLREFIPHSTEYMMQFAKSKTVK-VLKTLIEKFE---QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI  139 (434)
T ss_dssp             HHHHTCH-HHHHHHHHHTHHHHHTSCHHHHHH-HHHHHHHHHC---SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            3445555 678888888888777665432221 1111111100   00001466777777776644333      34556


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYR  181 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r  181 (522)
                      ..+.+....   +++.+++.++.+++..-.+.      ..++...+.+....+. +.++..++++++...+..+..+...
T Consensus       140 ~la~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~  215 (434)
T 4b4t_Q          140 KLATLHYQK---KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTV  215 (434)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHc---cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHH
Confidence            667777777   89999999999998753332      3467777777777777 7899999999998766555444333


Q ss_pred             HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451        182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE  217 (522)
Q Consensus       182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~  217 (522)
                      +.+...+...     ....+.++++..++.+++.+.
T Consensus       216 ~~~~~~~g~~-----~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          216 AELDLMSGIL-----HCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHH-----TTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHh
Confidence            3333222100     011267888888888888654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.27  E-value=3.6  Score=34.14  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc----CCCChHHHHHHHHH
Q psy13451         56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS----RAPNYEKELELCNY  131 (522)
Q Consensus        56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~----~~~~~~~el~~~~~  131 (522)
                      |..-+.++|=--++.+....        -.++.+.+++.+++..|.      .||-++..+.    ..++|.+++.+++.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~--------di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~  102 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVN--------DERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDT  102 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHH--------HHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            55566666655545443221        147888888888888776      4666665441    34789999999999


Q ss_pred             HHhhcCCCcchhhHHHHHHHh
Q psy13451        132 YLELDERNFHCWDYRRYVTDR  152 (522)
Q Consensus       132 ~l~~d~kn~~aW~~R~~~l~~  152 (522)
                      +|+.+|.|-+|=.-+.-+-.+
T Consensus       103 lL~~eP~n~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A          103 LFEHERNNKQVGALKSMVEDK  123 (144)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHH
Confidence            999999988886655554443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.86  E-value=5.3  Score=40.89  Aligned_cols=187  Identities=13%  Similarity=0.029  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451         21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP  100 (522)
Q Consensus        21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p  100 (522)
                      +..=|++++++++..-.+++ +.+-.++.+++...| .+.+|..--......+..  .+.+...++.++...    -.+|
T Consensus        11 i~~aR~vyer~l~~~P~~~~-e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~--~~~i~~~fe~al~~v----g~d~   82 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMSKDY-RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQK--KFKLYEVYEFTLGQF----ENYW   82 (493)
T ss_dssp             -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC------CTHHHHHHHHHHS----TTCT
T ss_pred             hHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHc----CCCc
Confidence            44556777777777766665 778899999999888 777998655555554321  122222333333221    2367


Q ss_pred             CCccchhhHHHHHHHhc-CCCChHHHHHHHHHHHhhcCC-----------------------------------------
Q psy13451        101 KSYGTWFQRCYVLDHIS-RAPNYEKELELCNYYLELDER-----------------------------------------  138 (522)
Q Consensus       101 k~y~~W~~R~~il~~l~-~~~~~~~el~~~~~~l~~d~k-----------------------------------------  138 (522)
                      .++.+|.--...+.... ..+.++..-..|++++..-+.                                         
T Consensus        83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~  162 (493)
T 2uy1_A           83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ  162 (493)
T ss_dssp             TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence            77777764443322110 001222333344444432111                                         


Q ss_pred             --------CcchhhHHHHHHHhcCC--CCH------HHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhH
Q psy13451        139 --------NFHCWDYRRYVTDRHKV--APL------KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDK  202 (522)
Q Consensus       139 --------n~~aW~~R~~~l~~~~~--~~~------~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  202 (522)
                              +...|..  ++--..+.  ..+      .-...+++++...|.....|..-...+...            +.
T Consensus       163 ~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~------------~~  228 (493)
T 2uy1_A          163 IQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI------------GQ  228 (493)
T ss_dssp             HHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT------------TC
T ss_pred             HHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------------CC
Confidence                    2223311  11111111  011      124578889999999999998766555443            46


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451        203 YVNEFSMVESAVFTEPKDQSAWFYQRWL  230 (522)
Q Consensus       203 ~~~el~~~~~ai~~~p~~~s~W~y~~~l  230 (522)
                      .+++.+.+.+|+.. |.+...|.+..-.
T Consensus       229 ~~~ar~i~erAi~~-P~~~~l~~~y~~~  255 (493)
T 2uy1_A          229 KEKAKKVVERGIEM-SDGMFLSLYYGLV  255 (493)
T ss_dssp             HHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence            78899999999999 9999999875444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.79  E-value=3.5  Score=33.75  Aligned_cols=65  Identities=11%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhCCC-CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh
Q psy13451         85 VDRELKLTKDCLLAQPK-SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR  152 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk-~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~  152 (522)
                      ..+.+.+++.+++.+|. .-..+++-.---.++   ++|.+++.+++.+|+.+|.|-+|=.-+.-+-++
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl---gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKL---GEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            46777788888877762 244455555555566   788888888888888888888776555554444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.04  E-value=1.5  Score=35.72  Aligned_cols=95  Identities=17%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             HHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc-C-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451         92 TKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD-E-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE  169 (522)
Q Consensus        92 ~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d-~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~  169 (522)
                      +...+..++-+..+=+.=.|.|-+-....+..+.+.+.+.++..+ | ++..+-+|-+...-+++. +.++..+++..++
T Consensus        24 y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           24 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred             HHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Confidence            344445567777777777888887622345677999999999987 5 677888888888888888 7999999999999


Q ss_pred             hcCCcchHhhHHHHHhch
Q psy13451        170 ANFSNYSAWHYRSKLLPL  187 (522)
Q Consensus       170 ~~~~n~saW~~r~~ll~~  187 (522)
                      .+|.|-.|..-+..+-.+
T Consensus       103 ~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A          103 TEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHH
Confidence            999999987666554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.14  E-value=1.3  Score=36.34  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=65.7

Q ss_pred             cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDE-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      ++=..=.|.|.+-....+..+.+.+++.+++.+| +.-.+++|-+.---+++. ++++..+++.+++.+|.|-.|-.-+.
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3344446777776233467899999999999988 568899999999999998 79999999999999999998866555


Q ss_pred             HHhch
Q psy13451        183 KLLPL  187 (522)
Q Consensus       183 ~ll~~  187 (522)
                      .+-.+
T Consensus       120 ~Ie~k  124 (134)
T 3o48_A          120 MVEDK  124 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=81.62  E-value=3.3  Score=33.64  Aligned_cols=91  Identities=13%  Similarity=0.003  Sum_probs=68.9

Q ss_pred             HHHHHHhhcCCCcchhhHHHHHHHhcCCC--CHHHHHHHHHHHHhc-C-CcchHhhHHHHHhchhCCCCCCCCccchhHH
Q psy13451        128 LCNYYLELDERNFHCWDYRRYVTDRHKVA--PLKELNYSTEKIEAN-F-SNYSAWHYRSKLLPLLYPDPNNHLPIEQDKY  203 (522)
Q Consensus       128 ~~~~~l~~d~kn~~aW~~R~~~l~~~~~~--~~~el~~~~~~i~~~-~-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~  203 (522)
                      -|.+.+..++-+-.+=..-+|++-+....  ..+-+...+..+..+ | .+--+-+|.+....++            +.|
T Consensus        23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl------------g~Y   90 (126)
T 1nzn_A           23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL------------KEY   90 (126)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT------------TCH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh------------hhH
Confidence            44555566677777777778888775531  134678888888877 5 5667788888888888            899


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451        204 VNEFSMVESAVFTEPKDQSAWFYQRWL  230 (522)
Q Consensus       204 ~~el~~~~~ai~~~p~~~s~W~y~~~l  230 (522)
                      .++..+++..+.++|+|..|..-+.-+
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999888655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.17  E-value=8.8  Score=31.77  Aligned_cols=87  Identities=11%  Similarity=0.042  Sum_probs=66.5

Q ss_pred             CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451        101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH  179 (522)
Q Consensus       101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~  179 (522)
                      -+.++=+.=.|+|-+-....+.++.+.+.+.++..+| +.-.+-+|-..-.-+++. +.++..|++.+++.+|.|-.|-.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~-Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHH
Confidence            3445555567888776334567899999999999888 566677777777778887 79999999999999999998866


Q ss_pred             HHHHHhchh
Q psy13451        180 YRSKLLPLL  188 (522)
Q Consensus       180 ~r~~ll~~l  188 (522)
                      -+..+-.++
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	522
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-37
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  137 bits (346), Expect = 4e-37
 Identities = 133/363 (36%), Positives = 181/363 (49%), Gaps = 46/363 (12%)

Query: 1   MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
           MHGR K   S ++A     +R  K+K Y +  + +F+KR+  E D+  L LTS++L   P
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 57  DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
           D  +LWN R+EVL H++   + EE   LV  EL   + CL   PKSYGTW  RC++L  +
Sbjct: 61  DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120

Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
              PN+ +ELELC  +LE DERNFHCWDYRR+V  +  VAP +EL ++   I  NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query: 177 AWHYRSKLLPLL--YPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
           +WHYRS LLP L   PD      + ++  + E  +V++A FT+P DQSAWFY RWLLG  
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLL 294
               +   +                         V  + L S   L        W     
Sbjct: 240 EPLFRCELSVEK--------------------STVLQSELESCKELQELEPENKW----- 274

Query: 295 SLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKY 354
                         L +I LL           E + + F  LK +DP+R  Y  D  SK+
Sbjct: 275 -------------CLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAAYLDDLRSKF 320

Query: 355 KIE 357
            +E
Sbjct: 321 LLE 323

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-11
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 19/199 (9%)

Query: 36  KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
           +  E  + A  LT + +       ++W++R+ +L  ++  L E         E+      
Sbjct: 54  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE---------EMNYITAI 104

Query: 96  LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
           +  QPK+Y  W  R      +    +  +ELE     L  D +N+H W +R++V  +   
Sbjct: 105 IEEQPKNYQVWHHRRV---LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI-QEFK 160

Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215
               EL Y  + ++ +  N S W+ R  ++       +  +   + +Y  E       + 
Sbjct: 161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE------MIK 214

Query: 216 TEPKDQSAWFYQRWLLGER 234
             P ++SAW Y + +L +R
Sbjct: 215 LVPHNESAWNYLKGILQDR 233

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
            L + Q+++I  +        ++L+ N L +        L     L L   ++S +    
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVS 326

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
            L  L+ L  ++N      ++        L   H  +S L    +L  +  L ++  A
Sbjct: 327 SLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 9e-07
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 11/189 (5%)

Query: 256 NQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLL 315
           NQ+ D+T    +     + ++   L     +   +  L  L        ++A L+ +T L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKL 265

Query: 316 QHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL 375
             L  G++  + I          L  L      +       +    +N +      L   
Sbjct: 266 TELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 376 QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSL 435
            ++ I  +      +++  +NN +++  +  L  L     L   H  +S L    +L  +
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI 375

Query: 436 ESLDVSHNA 444
             L ++  A
Sbjct: 376 TQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
           +L++ Q++++  +       ++ L  N ++N  +  L  L A  +L+L    L  +    
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS 304

Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
           +L +L  L +  N       +      Q L   +  +S +    +L ++  L   HN I 
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 364

Query: 487 HI 488
            +
Sbjct: 365 DL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
              +L+  QL  I  +    +   +DL+NN ++N  L  L+ L     LKL    +S++ 
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNIS 279

Query: 428 VFPHLPSLESLDVSHN----APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
               L +L +L+++ N       I        L L   ++S +     L  L+ L  ++N
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339

Query: 484 AIDHIE 489
            +  + 
Sbjct: 340 KVSDVS 345

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
           ++ +L+   LT + H+        +DLS+N L       L  L   E L+ +  +L ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59

Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
              +LP L+ L + +N             +L     +++      P L  L++  N++  
Sbjct: 60  GVANLPRLQELLLCNN-------------RLQ--QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Query: 488 IED 490
            E 
Sbjct: 105 EEG 107

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 369 ITNLSSLQLTSIH---HMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
           +  L   Q+  +            + +DL            L        L       ++
Sbjct: 1   LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAAT 56

Query: 426 LH-VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
           L  +  ++P L SL++S+N             +L         +    P+L+ L++S N 
Sbjct: 57  LRIIEENIPELLSLNLSNN-------------RLYRLD-DMSSIVQKAPNLKILNLSGNE 102

Query: 485 IDHIEDSVFAKYEACVQVILTGNPVS 510
           +    +    K     ++ L GN +S
Sbjct: 103 LKSERELDKIKGLKLEELWLDGNSLS 128

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 22/111 (19%)

Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
           +     +         N  +N          + E L +++  L  L      P LE L  
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIA 311

Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
           S N                   L+ +       +L+ L V +N +    D 
Sbjct: 312 SFN------------------HLAEVP--ELPQNLKQLHVEYNPLREFPDI 342

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 18/207 (8%)

Query: 298 CPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
              +N +          LQ L    ++  ++    F+ L  +  + L       S  +  
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 358 TFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLK 417
            F     +      ++   +T+I          ++ L  N +T      L  L     L 
Sbjct: 145 AF--QGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 418 LTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS---------- 465
           L+  S+S++      + P L  L +++N    +         +    L +          
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 466 ---LHVFPHLPSLESLDVSHNAIDHIE 489
                      S   + +  N + + E
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 18/102 (17%)

Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
           +            LS      + L  L  L    +LK     +S +     LP+L  + +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202

Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
            +N                   +S +    +  +L  + +++
Sbjct: 203 KNN------------------QISDVSPLANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	522
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	100.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	100.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.52
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.44
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.16
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.01
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.98
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.88
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.87
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.75
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.69
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.6
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.58
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.55
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.19
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.55
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.5
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.47
d1dcea2	109	Rab geranylgeranyltransferase alpha-subunit, inser	97.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.16
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.16
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.15
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.1
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.03
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.64

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.3e-33  Score=274.39  Aligned_cols=321  Identities=42%  Similarity=0.747  Sum_probs=253.8

Q ss_pred             CCCcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Q psy13451          1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL   76 (522)
Q Consensus         1 mhg~~~~~~~~~~~----~~~~~k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~   76 (522)
                      ||||+|+++++||+    .++..|++.|..+.+.+.+.+..++++++|++.++++|.+||+++++|++||.++..++...
T Consensus         1 ~~g~~~~~~~~e~~~~~~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~   80 (334)
T d1dcea1           1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK   80 (334)
T ss_dssp             CCSCBCSSCSTTSSCCSCCCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCcccccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999988777    67788999999999999999999999999999999999999999999999999999998776


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC
Q psy13451         77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA  156 (522)
Q Consensus        77 ~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~  156 (522)
                      ........+++|+.+++.+++.+||++.+|+||+|++..+ ...++.+++..++++++.||+++++|.++.|.+......
T Consensus        81 ~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1          81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh-ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence            6677777899999999999999999999999999999998 677899999999999999999999999988877766555


Q ss_pred             CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCC--ccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451        157 PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL--PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER  234 (522)
Q Consensus       157 ~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~--~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~  234 (522)
                      +++++++++++|+.||+|+++|++++.++..+.....+..  .........+++++..++..+|.|+++|.|.+.+....
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~  239 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence            7999999999999999999999999999999977655432  23346677888999999999999999999999987654


Q ss_pred             CCcccceecccCCCceEEEEecccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHH
Q psy13451        235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITL  314 (522)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l  314 (522)
                      .........       +.   .. ..... .                  ..+..      .+ ....+.+.+....+..+
T Consensus       240 ~~~~~~~~l-------~~---~~-~~~~~-~------------------~~a~~------~~-~~~~~~~p~~~~~~~~l  282 (334)
T d1dcea1         240 EPLFRCELS-------VE---KS-TVLQS-E------------------LESCK------EL-QELEPENKWCLLTIILL  282 (334)
T ss_dssp             CCSSSCCCC-------HH---HH-HHHHH-H------------------HHHHH------HH-HHHCTTCHHHHHHHHHH
T ss_pred             chhhHHHHH-------HH---HH-HHHhh-H------------------HHHHH------HH-HHHHhhCchHHHHHHHH
Confidence            322110000       00   00 00000 0                  00000      00 01112233444444445


Q ss_pred             HHhhCCCCCCChhHHHHhcccccccCccCcchhhchhhhhhhhcccc
Q psy13451        315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQ  361 (522)
Q Consensus       315 ~~~i~~~~~~~~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~  361 (522)
                      .......+.  ..+.+..+..+..+||.+..++.++...+...+.+.
T Consensus       283 ~~~~~~~~~--~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~  327 (334)
T d1dcea1         283 MRALDPLLY--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL  327 (334)
T ss_dssp             HHHHCTGGG--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC--HHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHH
Confidence            555555555  788999999999999999999999888777664443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=268.78  Aligned_cols=195  Identities=21%  Similarity=0.411  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC
Q psy13451         22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK  101 (522)
Q Consensus        22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk  101 (522)
                      ..|.++++.+.+...+++.+++|+++++++|.+||++++||++||.++..++++         +++|+.+++++++.+|+
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~---------~~eal~~~~~al~~~p~  110 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD---------LHEEMNYITAIIEEQPK  110 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcC---------HHHHHHHHHHHHHHHHh
Confidence            478899999999999999999999999999999999999999999999999875         69999999999999999


Q ss_pred             CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451        102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYR  181 (522)
Q Consensus       102 ~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r  181 (522)
                      ++++|++|++++..+   ++++++++++++++++||+|+++|.+|+|++..++. +++++++++++|+.||+|++||++|
T Consensus       111 ~~~a~~~~~~~~~~l---~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~-~~~Al~~~~~al~~~p~n~~a~~~r  186 (315)
T d2h6fa1         111 NYQVWHHRRVLVEWL---RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQR  186 (315)
T ss_dssp             CHHHHHHHHHHHHHH---TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhHHHHHhHHHHhh---ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHCCccHHHHHHH
Confidence            999999999999999   888999999999999999999999999999999998 7999999999999999999999999


Q ss_pred             HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                      +.++..+....      ..+.+++|++++.+|+..+|+|.++|+|+++++...+
T Consensus       187 ~~~l~~~~~~~------~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         187 YFVISNTTGYN------DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HHHHHHTTCSC------SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHccccc------hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            99998874432      3478999999999999999999999999999997654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.5e-24  Score=208.27  Aligned_cols=162  Identities=20%  Similarity=0.435  Sum_probs=152.6

Q ss_pred             HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHH
Q psy13451         52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNY  131 (522)
Q Consensus        52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~  131 (522)
                      |.++|++..|+++.|.++...+.          +++++..++++|+.||+++++|++|+-++..+  ..++++|+.++++
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~----------~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l--~~~~~eal~~~~~  103 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDER----------SERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHEEMNYITA  103 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence            56789999999999999999877          59999999999999999999999999999998  3469999999999


Q ss_pred             HHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHH
Q psy13451        132 YLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVE  211 (522)
Q Consensus       132 ~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~  211 (522)
                      +++.+|+++.+|.+|++++..++. +++++++++++|+.||+|+.+|.+|++++..+            +.+++++++++
T Consensus       104 al~~~p~~~~a~~~~~~~~~~l~~-~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~------------~~~~~Al~~~~  170 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEF------------KLWDNELQYVD  170 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCCTTHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhHHHHhhcc-HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH------------HhhHHHHHHHH
Confidence            999999999999999999999998 69999999999999999999999999999999            77889999999


Q ss_pred             HHHhcCCCCcchhhHHHHHhccCCCcc
Q psy13451        212 SAVFTEPKDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       212 ~ai~~~p~~~s~W~y~~~ll~~~~~~~  238 (522)
                      ++|.++|.|.++|++++.++...+...
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHCCccHHHHHHHHHHHHHccccc
Confidence            999999999999999999998876643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=165.90  Aligned_cols=173  Identities=21%  Similarity=0.167  Sum_probs=146.2

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCc
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC  413 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  413 (522)
                      ++++.||++++....-....+..   ++.+    +.|++++|.|+.++.+..+++|+.|+|++|+++ ..+..+..+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~---l~~L----~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMP---YTRL----TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTT---CTTC----CEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhc---cccc----ccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            47889999988765432222221   2222    599999999999998889999999999999998 567788999999


Q ss_pred             cEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCC
Q psy13451        414 ESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHN  483 (522)
Q Consensus       414 ~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N  483 (522)
                      +.|++++|.+..++  .+..+.+++.|++++|.++.++      .+.++.|++++|+|+.+++  +..+++|+.|+|++|
T Consensus       103 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence            99999999998875  4778899999999999998776      4678999999999999876  888999999999999


Q ss_pred             CCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        484 AIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       484 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      .|+.+|. .+..+++|+.|+|++||+.|+|..
T Consensus       183 ~L~~lp~-~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         183 SLYTIPK-GFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCCCCCT-TTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCcccCh-hHCCCCCCCEEEecCCCCCCCcch
Confidence            9998875 456789999999999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.6e-17  Score=156.04  Aligned_cols=183  Identities=19%  Similarity=0.152  Sum_probs=150.5

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEe-cCCCcccccC--cCCCCcccEEEecCCCCCCc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNL-SSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~l-s~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      ++..+..+++|+.+|++++.........+...   .    ....+.. ..+.++.++.  +.++++|+.|++++|.+...
T Consensus        48 ~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~---~----~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  120 (284)
T d1ozna_          48 PAASFRACRNLTILWLHSNVLARIDAAAFTGL---A----LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL  120 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTC---T----TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CHHHhhcccccccccccccccccccccccccc---c----cccccccccccccccccchhhcccccCCEEecCCcccccc
Confidence            34456888999999988776544322211111   0    1135544 4667888765  88999999999999999866


Q ss_pred             ccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451        403 CLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL  472 (522)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~  472 (522)
                      .+..+....+|+.+++++|.++.++  .|..+++|+.|++++|.++.++      +++|+.+++++|.++++.+  |..+
T Consensus       121 ~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence            7778888999999999999999986  4788999999999999998765      4789999999999999865  8999


Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       473 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                      ++|+.|++++|.+..+++..|+.+++|+.|++++|++.|+|..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            9999999999999999999999999999999999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.7e-16  Score=147.37  Aligned_cols=142  Identities=25%  Similarity=0.293  Sum_probs=128.4

Q ss_pred             cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCC
Q psy13451        368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNA  444 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~  444 (522)
                      +.|+|++|.|+.+|.  |..+++|+.|+|++|.++ .++ .++.+++|+.|++++|+++..+ .+..+++|+.|++++|.
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999875  889999999999999998 455 4678999999999999999876 57889999999999999


Q ss_pred             CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        445 PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       445 l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +..++      ..++..|++++|.++.+++  +..+++|+.|++++|.++.+++..|..+++|+.|+|++|.|+.
T Consensus       112 ~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            88765      4678999999999999876  7788999999999999999998899999999999999999984

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.5e-16  Score=140.75  Aligned_cols=139  Identities=21%  Similarity=0.305  Sum_probs=87.2

Q ss_pred             EEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCcc
Q psy13451        369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII  448 (522)
Q Consensus       369 ~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~  448 (522)
                      .|++++|+++.++++..+++|++|++++|++++. ++ ++.+++|+.|++++|.+..++++..++.|+.|++++|.+..+
T Consensus        44 ~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          44 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC
T ss_pred             EEECCCCCCCCccccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccccccccccccccccccccccccc
Confidence            5666666666666666666666666666666633 22 566666666666666666666666666666666666665543


Q ss_pred             c----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        449 L----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       449 ~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +    +++|+.|++++|.+..++.+..+++|+.|++++|.+++++  .++++++|+.|++++|+++.
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         122 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            3    3556666666666666555666666666666666666654  35666666666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.9e-16  Score=142.47  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=133.4

Q ss_pred             HhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCC
Q psy13451        331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPL  410 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  410 (522)
                      ..++.|+.|++.++.... +.. +   ..++.+    +.|++++|.+++++++..+++|+.|++++|+++ .+| .+..+
T Consensus        43 ~~L~~L~~L~l~~~~i~~-l~~-l---~~l~~L----~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l  111 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS-VQG-I---QYLPNV----TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLS-SLKDL  111 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC-CTT-G---GGCTTC----CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CGG-GGTTC
T ss_pred             HHhcCccEEECcCCCCCC-chh-H---hhCCCC----CEEeCCCccccCccccccCcccccccccccccc-ccc-ccccc
Confidence            456788888887765433 211 1   122222    589999999999888888999999999999998 444 48889


Q ss_pred             CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCC
Q psy13451        411 VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID  486 (522)
Q Consensus       411 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~  486 (522)
                      ++|+.|++++|.+..++.+..++.++.+++++|.++..+    +++|+.+++++|.+++++++..+++|+.|+|++|.|+
T Consensus       112 ~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCC
Confidence            999999999999988888888999999999999987654    5789999999999998877888999999999999999


Q ss_pred             CCChhhhcCCCCccEEEecC
Q psy13451        487 HIEDSVFAKYEACVQVILTG  506 (522)
Q Consensus       487 ~~~~~~l~~l~~L~~L~L~~  506 (522)
                      +++  .+.++++|+.|+|++
T Consensus       192 ~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BCG--GGTTCTTCSEEEEEE
T ss_pred             CCh--hhcCCCCCCEEEccC
Confidence            875  588999999999874

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.6e-16  Score=154.11  Aligned_cols=169  Identities=18%  Similarity=0.166  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+.++++++..+|+++++|.+|+.++..++...        +.+|+..++.++..+|+++.+|.++.|.....  .+.
T Consensus        90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~  159 (334)
T d1dcea1          90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQA--AVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--CCC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc--------HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh--ccc
Confidence            68999999999999999999999999999987633        68999999999999999999999888776664  478


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC---------------------------------------------
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA---------------------------------------------  156 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~---------------------------------------------  156 (522)
                      +++++.++++++++||+|+.+|++++.++..++..                                             
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~  239 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence            89999999999999999999999999999987641                                             


Q ss_pred             ------------------CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451        157 ------------------PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP  218 (522)
Q Consensus       157 ------------------~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p  218 (522)
                                        +.++++.+.+++..||.+..+|.+++.++..+            +.++++++++++|+++||
T Consensus       240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------------~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL------------LYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG------------GGHHHHHHHHHHHHHHCG
T ss_pred             chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHCc
Confidence                              12233344444444445555555555554444            889999999999999999


Q ss_pred             CCcchhhHHHHHhc
Q psy13451        219 KDQSAWFYQRWLLG  232 (522)
Q Consensus       219 ~~~s~W~y~~~ll~  232 (522)
                      .+...|.++++.+.
T Consensus       308 ~~~~y~~~L~~~~~  321 (334)
T d1dcea1         308 MRAAYLDDLRSKFL  321 (334)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHh
Confidence            99999998866553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=9.6e-16  Score=138.57  Aligned_cols=159  Identities=23%  Similarity=0.337  Sum_probs=135.1

Q ss_pred             HhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCC
Q psy13451        331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPL  410 (522)
Q Consensus       331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  410 (522)
                      ..+++++.|++.+++... +..    ...++.+    ++|++++|++++++++..+++|+.|++++|.+. .++ .+..+
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l~~----l~~l~nL----~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-IDG----VEYLNNL----TQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-DIT-PLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-CTT----GGGCTTC----CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTC
T ss_pred             HHhcCCCEEECCCCCCCC-ccc----cccCCCc----CcCccccccccCcccccCCcccccccccccccc-ccc-ccccc
Confidence            567899999988876543 111    1122222    699999999999988999999999999999987 444 48899


Q ss_pred             CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCC
Q psy13451        411 VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID  486 (522)
Q Consensus       411 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~  486 (522)
                      +.|+.|++++|.+..++.+..+++|+.|++++|.+..++    .++++.|++++|.++++++++++++|+.|++++|+|+
T Consensus       106 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         106 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCC
Confidence            999999999999999888899999999999999998765    5789999999999999988999999999999999999


Q ss_pred             CCChhhhcCCCCccEE
Q psy13451        487 HIEDSVFAKYEACVQV  502 (522)
Q Consensus       487 ~~~~~~l~~l~~L~~L  502 (522)
                      +++  .++++++|+.|
T Consensus       186 ~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         186 DIS--VLAKLTNLESL  199 (199)
T ss_dssp             CCG--GGGGCTTCSEE
T ss_pred             CCc--cccCCCCCCcC
Confidence            875  57889998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.2e-15  Score=137.20  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=98.2

Q ss_pred             cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcc-cccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNC-LRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      +++++++++|+.+|. +  .++++.|+|++|.|++.+ +..|..+++|+.|++++|.+..++  .+..+++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            478899999999887 4  368899999999997544 466788899999999999888875  5777888888888888


Q ss_pred             CCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       444 ~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      +++.++..                .|.++++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|++.
T Consensus        89 ~l~~l~~~----------------~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          89 KIKEISNK----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSS----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccCHH----------------HHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            87765432                15566677777777777777776677777777777777777777664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=146.42  Aligned_cols=203  Identities=11%  Similarity=0.072  Sum_probs=172.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      .++........|++ ++|+..++++|..+|++..+|..++.+....+.          +++++..++++++.+|++..+|
T Consensus        22 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~   90 (323)
T d1fcha_          22 PFEEGLRRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ----------ELLAISALRRCLELKPDNQTAL   90 (323)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHhhhcccccccccc
Confidence            34566777888888 899999999999999999999999999999988          7999999999999999999999


Q ss_pred             hhHHHHHHHhc----------------C------------------------------CCChHHHHHHHHHHHhhcCCCc
Q psy13451        107 FQRCYVLDHIS----------------R------------------------------APNYEKELELCNYYLELDERNF  140 (522)
Q Consensus       107 ~~R~~il~~l~----------------~------------------------------~~~~~~el~~~~~~l~~d~kn~  140 (522)
                      ...+.++....                +                              ...+.+.++.+.++++.+|.+.
T Consensus        91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            99998887650                0                              0124556667777778887766


Q ss_pred             ch--hhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451        141 HC--WDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP  218 (522)
Q Consensus       141 ~a--W~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p  218 (522)
                      .+  |...+.+....+. ++++++++++++..+|.+..+|..++.++...            +.++++++++++++..+|
T Consensus       171 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGE-YDKAVDCFTAALSVRPNDYLLWNKLGATLANG------------NQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred             ccccchhhHHHHHHHHH-Hhhhhcccccccccccccccchhhhhhccccc------------ccchhHHHHHHHHHHHhh
Confidence            54  5556777777777 79999999999999999999999999999888            889999999999999999


Q ss_pred             CCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451        219 KDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST  264 (522)
Q Consensus       219 ~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (522)
                      ++..+|..++.++.+.+++..           |+..|.+++.++|.
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~-----------A~~~~~~al~l~p~  272 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHRE-----------AVEHFLEALNMQRK  272 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHCCCHHH-----------HHHHHHHHHHhCCc
Confidence            999999999999998887766           55667888887664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.1e-15  Score=137.43  Aligned_cols=141  Identities=22%  Similarity=0.266  Sum_probs=127.2

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++|.++.++++..+++|+.|++++|.+++ ++ .++.+++|+.|++++|+++.++.+..+++|+.|++++|.+..
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccccccccccccccccccccccccc
Confidence            4899999999999989999999999999999995 34 378899999999999999999999999999999999998876


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++    ++.++.+++++|.+++...+..+++|+.+++++|.+++++  .++.+++|+.|+|++|+++..
T Consensus       127 ~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC
Confidence            54    5789999999999998877888899999999999999875  488999999999999999753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.1e-16  Score=134.36  Aligned_cols=132  Identities=20%  Similarity=0.141  Sum_probs=105.9

Q ss_pred             cccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------c
Q psy13451        377 LTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------C  450 (522)
Q Consensus       377 l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~  450 (522)
                      +...|.+.++..+++|+|++|.|+ .++..+..+++|+.|++++|.|+.++++..+++|++|++++|.++.++      +
T Consensus         8 i~~~~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             HHTSCEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             HhhhHhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccc
Confidence            334455667778888999999888 556666778889999999999888888888889999999999888764      4


Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCC---hhhhcCCCCccEEEecCCCCcc
Q psy13451        451 VYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIE---DSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++|+.|++++|.|++++.   +..+++|+.|++++|.++..+   ...+..+|+|+.||  +.+++.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            788899999998887653   778899999999999998876   34678899999876  545543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.1e-15  Score=125.06  Aligned_cols=119  Identities=20%  Similarity=0.279  Sum_probs=96.2

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      ++|++++|+|+.++.+..+++|++|++++|.++ .+|..|+.+++|+.|++++|.|+.++++..+++|+.|++++|+++.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCC
Confidence            478999999999988889999999999999998 6777889999999999999999999888888889888888888764


Q ss_pred             cccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC---hhhhcCCCCccEE
Q psy13451        448 ILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE---DSVFAKYEACVQV  502 (522)
Q Consensus       448 ~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~L  502 (522)
                      ++.               +..+..+++|+.|++++|+++..+   ......+|+|+.|
T Consensus        80 ~~~---------------~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAA---------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SST---------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCC---------------chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            431               112566778888888888887653   3445557777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=6.4e-15  Score=135.94  Aligned_cols=172  Identities=22%  Similarity=0.283  Sum_probs=137.3

Q ss_pred             HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451        329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT  408 (522)
Q Consensus       329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  408 (522)
                      .+..+.+|+.|++.+++... +. .+   ..++.+    +.|++++|.++.++++..+++++.+++++|.++ .++ .+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~-~l---~~l~~L----~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~-~i~-~l~  104 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT-IE-GV---QYLNNL----IGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS-AIA  104 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TG---GGCTTC----CEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG-GGT
T ss_pred             CHHHcCCcCEEECCCCCCCc-ch-hH---hcCCCC----cEeecCCceeecccccccccccccccccccccc-ccc-ccc
Confidence            45778888999888775432 21 11   122333    589999999998888888999999999999887 343 477


Q ss_pred             CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451        409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA  484 (522)
Q Consensus       409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~  484 (522)
                      .+++|+.++++++....++.+...+.+..+.++.+.+....    +++|+.|++++|.+++..++..+++|+.|+|++|.
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCc
Confidence            88999999999998888777777888888888888776433    57799999999999888778889999999999999


Q ss_pred             CCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        485 IDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       485 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +++++  .++++++|+.|+|++|+++...
T Consensus       185 l~~l~--~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         185 ISDIS--PLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             CCCCG--GGGGCTTCCEEECTTSCCCBCG
T ss_pred             cCCCh--hhcCCCCCCEEECcCCcCCCCc
Confidence            99875  4788999999999999987543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=2.6e-15  Score=145.69  Aligned_cols=180  Identities=13%  Similarity=0.061  Sum_probs=124.4

Q ss_pred             hhHHHHhcccccccCccC-cchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCc
Q psy13451        326 NEIILKRFDLLKTLDPLR-LNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN  402 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~-~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~  402 (522)
                      .|..++.+++|++||+++ +.+.+.++..+...   ..+    ++|++++|++++++.  +..+..|+.+++++|.+.+.
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L---~~L----~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---TQL----HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC---TTC----SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CChHHhcCccccccccccccccccccccccccc---ccc----chhhhccccccccccccccchhhhccccccccccccc
Confidence            455667888888888876 45555555443322   222    578888888887544  67777888888888887777


Q ss_pred             ccccCCCCCCccEEEcCCCCCCC-CC-CCCCCCCc-CEEEccCCCCCccc-----------------------------c
Q psy13451        403 CLRHLTPLVACESLKLTHCSLSS-LH-VFPHLPSL-ESLDVSHNAPNIIL-----------------------------C  450 (522)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L-~~L~ls~N~l~~~~-----------------------------~  450 (522)
                      +|..+..++.++.+++++|.+++ +| .+..+..+ +.+++++|++++..                             .
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred             CchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77778888888888888887764 33 34444443 66667766654211                             2


Q ss_pred             CcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        451 VYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      .+++.+++++|.++..++ +..+++|+.|+|++|++++..|..++.+++|+.|+|++|.+++.
T Consensus       221 ~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            456777788877766544 67778888888888888865556788888888888888877753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=2.3e-14  Score=132.07  Aligned_cols=164  Identities=17%  Similarity=0.204  Sum_probs=138.0

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      ++.+++|+.|+++++......+     ...++.+    +.+++++|.++.++.+..+++|+.+++++|...+.  ..+..
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~-----l~~l~~l----~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~--~~~~~  127 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP-----LKNLTKI----TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAG  127 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-----GTTCCSC----CEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GGGTT
T ss_pred             HhcCCCCcEeecCCceeecccc-----ccccccc----ccccccccccccccccccccccccccccccccccc--chhcc
Confidence            5789999999999886543211     1122222    58999999999999999999999999999998743  33677


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      .+.+..+.++++.+.....+..+++|+.|++++|.+....    +++|+.|++++|.+++++++..+++|+.|+|++|+|
T Consensus       128 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             ccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcC
Confidence            8899999999999988877888999999999999987543    588999999999999988889999999999999999


Q ss_pred             CCCChhhhcCCCCccEEEecC
Q psy13451        486 DHIEDSVFAKYEACVQVILTG  506 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~  506 (522)
                      ++++  .++++++|+.|++++
T Consensus       208 t~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         208 SDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CBCG--GGTTCTTCCEEEEEE
T ss_pred             CCCc--ccccCCCCCEEEeeC
Confidence            9986  488999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-14  Score=134.51  Aligned_cols=173  Identities=23%  Similarity=0.224  Sum_probs=136.2

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEec-CCCCCCcccccCCCC
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLS-NNPLTNNCLRHLTPL  410 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l  410 (522)
                      +.++.|+++++.+..-....+..   +..+    ++|++++|.+..++.  +..++.+..+... .|.++...+..|.++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~---l~~L----~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRA---CRNL----TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTT---CTTC----CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhc---cccc----cccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            45677888877654321111111   1112    588888888888765  6667777777654 566665667789999


Q ss_pred             CCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEc
Q psy13451        411 VACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDV  480 (522)
Q Consensus       411 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~L  480 (522)
                      ++|+.|++++|.+..++  .+..+++|+.+++++|.++.++      .++|+.|++++|.++.+++  +..+++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            99999999999988765  4677889999999999998775      3678999999999999876  888999999999


Q ss_pred             cCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451        481 SHNAIDHIEDSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       481 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++|.++.+.+..|..+++|+.|++++|.+....
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhccccccChhHhhhhhhccccccccccccccc
Confidence            999999998889999999999999999998654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=2.4e-14  Score=142.34  Aligned_cols=173  Identities=19%  Similarity=0.210  Sum_probs=123.1

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCccccc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRH  406 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~  406 (522)
                      ......++++..+++.++......+.     .....+    +.|++++|.++.++.+..+++|+.|++++|.+++..+  
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~-----~~~~~L----~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--  258 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPL-----GILTNL----DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--  258 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGG-----GGCTTC----CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ccccccccccceeeccCCccCCCCcc-----cccCCC----CEEECCCCCCCCcchhhcccccchhccccCccCCCCc--
Confidence            34456777788887776654332111     011111    5788888888887777778888888888888874333  


Q ss_pred             CCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccC
Q psy13451        407 LTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH  482 (522)
Q Consensus       407 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~  482 (522)
                      +..+++|+.|++++|.++.++.+..++.++.+.++.|.++.++    +++++.|++++|++++++++..+++|+.|++++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~  338 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN  338 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCC
Confidence            6777888888888888887777777777788888888776554    467778888888887776677777888888888


Q ss_pred             CCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        483 NAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       483 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      |.|++++  .++.+++|+.|++++|+++..
T Consensus       339 n~l~~l~--~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         339 NKVSDVS--SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCh--hHcCCCCCCEEECCCCcCCCC
Confidence            8877764  467778888888888877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-13  Score=134.94  Aligned_cols=168  Identities=13%  Similarity=0.047  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      ++|+..+.+++.++|....+|...+.+....+.          +++++..++++++.+|++..+|...+.++...   ++
T Consensus       220 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~  286 (388)
T d1w3ba_         220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL----------IDLAIDTYRRAIELQPHFPDAYCNLANALKEK---GS  286 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CC
Confidence            344555555555555555555555554444444          68889999999999999999999999999888   88


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD  201 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~  201 (522)
                      +.++++.+++++..+|.+..+|..++.+....+. +++++++++++++.+|.+..+|..++.++...            +
T Consensus       287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------g  353 (388)
T d1w3ba_         287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------------G  353 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT------------T
T ss_pred             HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------C
Confidence            8999999999999999999999999999988887 68899999999999999999999999988887            7


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451        202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT  235 (522)
Q Consensus       202 ~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~  235 (522)
                      .++++++++++|+.++|++..+|..++.++.+.+
T Consensus       354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            7889999999999999999999988888876654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=4.2e-14  Score=140.56  Aligned_cols=165  Identities=18%  Similarity=0.211  Sum_probs=140.4

Q ss_pred             HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451        330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP  409 (522)
Q Consensus       330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  409 (522)
                      ...+++|+.+++.++.... ++. +   ..+..+    +.+++++|.+++++++..+++|+.|++++|.+++. + .+..
T Consensus       215 ~~~~~~L~~L~l~~n~l~~-~~~-l---~~l~~L----~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~-~-~~~~  283 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD-IGT-L---ASLTNL----TDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-S-PLAG  283 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-G---GGCTTC----SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             ccccCCCCEEECCCCCCCC-cch-h---hccccc----chhccccCccCCCCcccccccCCEeeccCcccCCC-C-cccc
Confidence            4677899999988875433 211 1   112222    58999999999999899999999999999999844 3 3778


Q ss_pred             CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451        410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l  485 (522)
                      ++.++.+.++.|.++.++.+..+++++.|++++|+++.++    +++|+.|++++|.|++++.++.+++|+.|++++|+|
T Consensus       284 ~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcC
Confidence            8999999999999999888889999999999999998765    588999999999999987789999999999999999


Q ss_pred             CCCChhhhcCCCCccEEEecCC
Q psy13451        486 DHIEDSVFAKYEACVQVILTGN  507 (522)
Q Consensus       486 ~~~~~~~l~~l~~L~~L~L~~N  507 (522)
                      +++++  ++++++|+.|+|++|
T Consensus       364 ~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CBCGG--GTTCTTCSEEECCCE
T ss_pred             CCChh--hccCCCCCEeeCCCC
Confidence            99864  889999999999998

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-13  Score=136.14  Aligned_cols=189  Identities=8%  Similarity=-0.003  Sum_probs=173.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcC
Q psy13451         39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR  118 (522)
Q Consensus        39 ~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~  118 (522)
                      ...++|...+.+++.++|++..+|...+.++...+.          +++++..++.++..+|....+|...+.+....  
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  250 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI----------FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ--  250 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC----------TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcccc----------HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC--
Confidence            344889999999999999999999999999998887          68999999999999999999999999999998  


Q ss_pred             CCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCcc
Q psy13451        119 APNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI  198 (522)
Q Consensus       119 ~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~  198 (522)
                       +++++++..++++++.+|++..+|...+.++...+. +.++++.+++++..+|.+..+|..++.+....          
T Consensus       251 -~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------  318 (388)
T d1w3ba_         251 -GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ----------  318 (388)
T ss_dssp             -TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----------
T ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhhhccCCccchhhhHHHHHHHHC----------
Confidence             899999999999999999999999999999999988 68999999999999999999999999998877          


Q ss_pred             chhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451        199 EQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST  264 (522)
Q Consensus       199 ~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (522)
                        +.++++++++++++..+|++..+|..++.++...++...           |+..|.++++++|+
T Consensus       319 --~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-----------A~~~~~~al~l~P~  371 (388)
T d1w3ba_         319 --GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE-----------ALMHYKEAIRISPT  371 (388)
T ss_dssp             --TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH-----------HHHHHHHHHTTCTT
T ss_pred             --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCCC
Confidence              789999999999999999999999999999998887766           45557777776653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=6.2e-14  Score=115.95  Aligned_cols=104  Identities=26%  Similarity=0.353  Sum_probs=74.5

Q ss_pred             cEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCCCC
Q psy13451        390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHV  468 (522)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~~~  468 (522)
                      +.|+|++|.++ .++ .+..+++|++|++++|.|+.+| +++.+++|+.|++++|.+                  +++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i------------------~~l~~   60 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL------------------ENVDG   60 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC------------------CCCGG
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc------------------cccCc
Confidence            35666666666 333 3566666666666666666664 355556666655555554                  44445


Q ss_pred             CCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccEEEecCCCCcccc
Q psy13451        469 FPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       469 l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      +..+++|+.|++++|.|+.++ ...++.+++|+.|++++|+++...
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            778899999999999999886 367899999999999999998654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=2.2e-13  Score=131.30  Aligned_cols=128  Identities=17%  Similarity=0.201  Sum_probs=104.2

Q ss_pred             cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451        383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ  454 (522)
Q Consensus       383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~  454 (522)
                      +..+++|+.+++++|.++ .+|..+  +++|+.|++++|.++..+  .+..++.++.|++++|.++.++      +++|+
T Consensus       146 ~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             cccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence            556778888888888887 455433  578889999988877653  5788889999999999998765      47899


Q ss_pred             EEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhh------cCCCCccEEEecCCCCcccc
Q psy13451        455 SLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVF------AKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       455 ~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l------~~l~~L~~L~L~~N~l~~~~  513 (522)
                      .|+|++|+|+.++. +..+++|+.|+|++|+|+.++...|      ..+.+|+.|+|++|++.+..
T Consensus       223 ~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            99999999999876 8889999999999999999865444      45678999999999997644

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.44  E-value=1.5e-14  Score=140.13  Aligned_cols=185  Identities=13%  Similarity=0.104  Sum_probs=137.9

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcc
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      .|..++.+++|+.||++++.+....+..+...   ..+    +.+++++|.+.. +|. +..++.++.+++++|.+++.+
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~---~~L----~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i  165 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI---KTL----VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC---TTC----CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             cccccccccccchhhhccccccccccccccch---hhh----cccccccccccccCchhhccCcccceeecccccccccc
Confidence            56678999999999999987766544433222   111    477888886665 454 777888888888888888777


Q ss_pred             cccCCCCCCc-cEEEcCCCCCCCC------------------------C-CCCCCCCcCEEEccCCCCCccc-----cCc
Q psy13451        404 LRHLTPLVAC-ESLKLTHCSLSSL------------------------H-VFPHLPSLESLDVSHNAPNIIL-----CVY  452 (522)
Q Consensus       404 ~~~~~~l~~L-~~L~l~~n~l~~~------------------------~-~~~~l~~L~~L~ls~N~l~~~~-----~~~  452 (522)
                      |..+..+..+ +.+++++|++++.                        + .+..+++++.+++++|.+...+     .++
T Consensus       166 p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~  245 (313)
T d1ogqa_         166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN  245 (313)
T ss_dssp             CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777766665 6677777665431                        1 2456778999999999887543     578


Q ss_pred             ccEEEcCCCCCCC-CCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccccccc
Q psy13451        453 FQSLKLTHCSLSS-LHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVVKHC  518 (522)
Q Consensus       453 L~~L~Ls~n~l~~-~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  518 (522)
                      |+.|+|++|++++ +|. +..+++|+.|+|++|+|++..| .++.+++|+.+++++|+.-|...+..|
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCCCCCC
Confidence            9999999999995 554 8899999999999999996433 467889999999999997776655544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-12  Score=123.67  Aligned_cols=190  Identities=11%  Similarity=0.010  Sum_probs=155.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccc------------H--------------------
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLA------------E--------------------   78 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~------------~--------------------   78 (522)
                      .......|++ ++|+..+.+++.++|++..+|...+.++...+....            +                    
T Consensus        60 g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (323)
T d1fcha_          60 GTTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP  138 (323)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred             HHHHHHcCCh-HHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhccccc
Confidence            3344455555 789999999999999999999999988877643100            0                    


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHhCCCCc--cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH
Q psy13451         79 -------EELHELVDRELKLTKDCLLAQPKSY--GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYV  149 (522)
Q Consensus        79 -------~~~~~~~~~eL~~~~~~l~~~pk~y--~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~  149 (522)
                             -.....+.++...+.+++..+|.+.  .+|...+.+....   +++++++..+++++..+|.+..+|...+.+
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  215 (323)
T d1fcha_         139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWNKLGAT  215 (323)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH---HHHhhhhcccccccccccccccchhhhhhc
Confidence                   0112346778888999999999876  4566778888887   899999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcch------
Q psy13451        150 TDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSA------  223 (522)
Q Consensus       150 l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~------  223 (522)
                      ....+. +++++++++++++.+|.+..+|...+.++..+            +.++++++.+.+|+.++|++..+      
T Consensus       216 ~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~------------g~~~~A~~~~~~al~l~p~~~~~~~~~~~  282 (323)
T d1fcha_         216 LANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINL------------GAHREAVEHFLEALNMQRKSRGPRGEGGA  282 (323)
T ss_dssp             HHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred             cccccc-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCcChhhhhhhHH
Confidence            999998 79999999999999999999999999999998            88999999999999999998764      


Q ss_pred             -----hhHHHHHhccCCCc
Q psy13451        224 -----WFYQRWLLGERTSP  237 (522)
Q Consensus       224 -----W~y~~~ll~~~~~~  237 (522)
                           |.+.+..+...++.
T Consensus       283 ~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         283 MSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             CCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHHHcCCH
Confidence                 55556565555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5.5e-13  Score=124.44  Aligned_cols=178  Identities=13%  Similarity=-0.026  Sum_probs=141.9

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451         28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF  107 (522)
Q Consensus        28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~  107 (522)
                      ..........|++ ++|++.++++|.++|++..+|+.++.++..++.          +++++..++.+++.+|++..+|.
T Consensus        41 ~~~G~~y~~~g~~-~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~  109 (259)
T d1xnfa_          41 YERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN----------FDAAYEAFDSVLELDPTYNYAHL  109 (259)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHCCCH-HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH----------HHHhhhhhhHHHHHHhhhhhhHH
Confidence            3445556667777 899999999999999999999999999999998          79999999999999999999999


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC------------------------------C-
Q psy13451        108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV------------------------------A-  156 (522)
Q Consensus       108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~------------------------------~-  156 (522)
                      .++.++..+   ++++++++.++++++.+|.+..++.+........+.                              . 
T Consensus       110 ~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (259)
T d1xnfa_         110 NRGIALYYG---GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS  186 (259)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHH---hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHH
Confidence            999999998   899999999999999999998877666655444321                              0 


Q ss_pred             ----CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451        157 ----PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL  231 (522)
Q Consensus       157 ----~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll  231 (522)
                          ...........+..+|....+|++.+.+....            +.++++++++++|+..+|++.-.+.|-+.-|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~a~~~L  253 (259)
T d1xnfa_         187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL------------GDLDSATALFKLAVANNVHNFVEHRYALLEL  253 (259)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                01122223334445566667888888877776            7899999999999999999875554433333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=4.5e-14  Score=126.59  Aligned_cols=144  Identities=15%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             cEEEecCCCccc-ccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451        368 QITNLSSLQLTS-IHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH  442 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~  442 (522)
                      ++|+|++|.|+. ++.  |..+++|+.|+|++|.++...+..|..+++|+.|++++|+|+.++  .|.++++|+.|+|++
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            799999999986 433  788999999999999999888899999999999999999999986  489999999999999


Q ss_pred             CCCCccc------cCcccEEEcCCCCCCCCCCCCC-CCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451        443 NAPNIIL------CVYFQSLKLTHCSLSSLHVFPH-LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV  514 (522)
Q Consensus       443 N~l~~~~------~~~L~~L~Ls~n~l~~~~~l~~-~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  514 (522)
                      |.|+.++      .++|+.|+|++|.+........ ...++.+.+..|.+....+   ..+.+++.++|+.|.+.|.+.
T Consensus       112 N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p---~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS---TTTTTSBGGGSCTTTCCCCCC
T ss_pred             ccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC---hhhcCCEeeecCHhhCcCCCC
Confidence            9998876      3566777777777654432110 1123444455555443222   345566677888999988654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=1.7e-12  Score=124.85  Aligned_cols=61  Identities=23%  Similarity=0.277  Sum_probs=48.4

Q ss_pred             CcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        451 VYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      +.++.|++++|.++++++  +..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+|+.-
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCC
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccc-cccccccCCCEEECCCCccCcc
Confidence            456777788887777654  677888899999999888886 4688888999999999888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.2e-13  Score=115.33  Aligned_cols=108  Identities=18%  Similarity=0.256  Sum_probs=94.9

Q ss_pred             cCCCCCCccEEEcCCCCCCCCCCC-CCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCCCCEE
Q psy13451        406 HLTPLVACESLKLTHCSLSSLHVF-PHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPSLESL  478 (522)
Q Consensus       406 ~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L  478 (522)
                      .|.+..+++.|+|++|+|+.++.+ ..+++|+.|++++|.|+.++    +++|+.|++++|.++.+++  +..+++|+.|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            366778899999999999999864 67899999999999998765    5789999999999999876  5678999999


Q ss_pred             EccCCCCCCCCh-hhhcCCCCccEEEecCCCCcccc
Q psy13451        479 DVSHNAIDHIED-SVFAKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       479 ~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++++|.|+.++. ..+..+++|+.|++++|+++...
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             eeccccccccccccccccccccchhhcCCCcccccc
Confidence            999999998863 57889999999999999997554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.3e-12  Score=107.70  Aligned_cols=110  Identities=18%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             cccEEEecCCCCCCcccccCCCCCCccEEEcCCC-CCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCC
Q psy13451        388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHC-SLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLS  464 (522)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~  464 (522)
                      ....++++++.+. ..|..+..+++|+.|++++| .|+.++  .|..+++|+.|++++|+|+.++...            
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~------------   75 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA------------   75 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG------------
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc------------
Confidence            3445666666655 45555666666666666544 366554  3666666666666666655443221            


Q ss_pred             CCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451        465 SLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV  515 (522)
Q Consensus       465 ~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  515 (522)
                          |..+++|+.|+|++|+|+.++...+..+ +|+.|+|++|+|.|+|..
T Consensus        76 ----f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          76 ----FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             ----GGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGG
T ss_pred             ----ccccccccceeccCCCCcccChhhhccc-cccccccCCCcccCCchH
Confidence                4556677777777777777766556544 577777777777777743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.2e-14  Score=129.08  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             cEEEecCC--CcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCC-CCCCCcCEEEccCC
Q psy13451        368 QITNLSSL--QLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVF-PHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n--~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~ls~N  443 (522)
                      +.+.+++.  .++.++. +..+++|+.|+|++|.++ .++ .+..+++|+.|++++|.|+.++++ ..+++|+.|++++|
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            45666655  4666665 788999999999999998 444 588899999999999999998764 33467999999999


Q ss_pred             CCCccc----cCcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCCh----------hhhcCCCCccEEEecC
Q psy13451        444 APNIIL----CVYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIED----------SVFAKYEACVQVILTG  506 (522)
Q Consensus       444 ~l~~~~----~~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~----------~~l~~l~~L~~L~L~~  506 (522)
                      .++.++    +++|+.|++++|.|++++.   +..+++|+.|+|++|++....+          ..+..+|+|+.||  +
T Consensus       104 ~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~  181 (198)
T d1m9la_         104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--S
T ss_pred             cccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--C
Confidence            998765    4789999999999988753   7889999999999998865431          1266789998875  6


Q ss_pred             CCCccc
Q psy13451        507 NPVSAD  512 (522)
Q Consensus       507 N~l~~~  512 (522)
                      .+++.+
T Consensus       182 ~~I~~~  187 (198)
T d1m9la_         182 MPVDVD  187 (198)
T ss_dssp             GGGTTT
T ss_pred             ccCCHH
Confidence            666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.3e-12  Score=121.80  Aligned_cols=195  Identities=11%  Similarity=-0.085  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHh----CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCC
Q psy13451         44 ALSLTSEVLRN----IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRA  119 (522)
Q Consensus        44 al~~~~~~l~~----np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~  119 (522)
                      ++...++++..    +|+...+|..||.+....+.          +++++..++++|+.+|++..+|+.++.+...+   
T Consensus        18 al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~----------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~---   84 (259)
T d1xnfa_          18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGL----------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA---   84 (259)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHhhccCCCCHHHHhhhchHHHHH---
Confidence            44445555543    44566799999999999998          79999999999999999999999999999999   


Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC--------
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD--------  191 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~--------  191 (522)
                      ++++++++.++++++++|.+..+|..++.+...++. ++++++.++++++.+|.+..++.+.+.........        
T Consensus        85 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
T d1xnfa_          85 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ  163 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999999999999998 79999999999999999988776665444333110        


Q ss_pred             -----CCC-----------CCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEe
Q psy13451        192 -----PNN-----------HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTF  255 (522)
Q Consensus       192 -----~~~-----------~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  255 (522)
                           ...           ......+.++.+...+..+....|....+|++++.++...+....           |+..|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~-----------A~~~~  232 (259)
T d1xnfa_         164 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS-----------ATALF  232 (259)
T ss_dssp             HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHH
T ss_pred             HhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHH-----------HHHHH
Confidence                 000           001112344455555566666677777788888777777766554           44456


Q ss_pred             cccccccc
Q psy13451        256 NQLVDLTS  263 (522)
Q Consensus       256 ~~~~~~~~  263 (522)
                      .+++..+|
T Consensus       233 ~~al~~~p  240 (259)
T d1xnfa_         233 KLAVANNV  240 (259)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHcCC
Confidence            66666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.7e-11  Score=97.25  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +.++.......|.+ ++|+..++++|.++|++..+|+.++.++..++.          +++++..+..+++.+|++..+|
T Consensus         6 l~~~g~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~   74 (117)
T d1elwa_           6 LKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD----------YQKAYEDGCKTVDLKPDWGKGY   74 (117)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHhcCCcchhhhhccccccccccc----------ccccchhhhhHHHhccchhhHH
Confidence            44556666777777 678888888888888888888888888888887          6888888888888888888888


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHH
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRY  148 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~  148 (522)
                      +.++-++..+   +++++++.+++++++.+|.|..+|...+-
T Consensus        75 ~~~g~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          75 SRKAAALEFL---NRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            8888888888   88888888888888888888877766543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=112.43  Aligned_cols=144  Identities=13%  Similarity=0.102  Sum_probs=74.4

Q ss_pred             cEEEecCCCccc-ccC--cCCCCcccEEEecC-CCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCC---CCCcCEEEc
Q psy13451        368 QITNLSSLQLTS-IHH--MHCFAHCKQVDLSN-NPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPH---LPSLESLDV  440 (522)
Q Consensus       368 ~~L~ls~n~l~~-l~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---l~~L~~L~l  440 (522)
                      ++|++++|.+.. ++.  |..++.++.+.+.. |.+....+..|.++++|+.|++++|.+...+.+..   +..+..+..
T Consensus        56 ~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~  135 (242)
T d1xwdc1          56 EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ  135 (242)
T ss_dssp             CEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEE
T ss_pred             hhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccc
Confidence            356666665544 222  45555555555432 44544444555556666666666666555443222   233333334


Q ss_pred             cCCCCCccc-------cCcccEEEcCCCCCCCCCC-CCCCCCCCEE-EccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        441 SHNAPNIIL-------CVYFQSLKLTHCSLSSLHV-FPHLPSLESL-DVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       441 s~N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L-~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      +++.+..++       ...++.|++++|.++.++. ....+++..+ ++++|.++.++...|.++++|+.|+|++|+++.
T Consensus       136 ~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             cccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence            444444332       1244556666666666554 2223333333 345566666665566666666666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=6.7e-14  Score=125.89  Aligned_cols=122  Identities=22%  Similarity=0.343  Sum_probs=79.2

Q ss_pred             ccEEEecCC--CCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCC
Q psy13451        389 CKQVDLSNN--PLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHC  461 (522)
Q Consensus       389 L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n  461 (522)
                      ++.++++++  .+. .++.++..+++|+.|++++|.|+.++++..+++|+.|++++|.++.++     ++.|+.|++++|
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            344444443  232 344556667777777777777777766666777777777777766654     245677777777


Q ss_pred             CCCCCCCCCCCCCCCEEEccCCCCCCCCh-hhhcCCCCccEEEecCCCCcc
Q psy13451        462 SLSSLHVFPHLPSLESLDVSHNAIDHIED-SVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       462 ~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      .|+.++++..+++|+.|++++|.|+.++. ..+..+++|+.|+|++|++..
T Consensus       104 ~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            77766556666677777777777776542 456677777777777776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-10  Score=94.00  Aligned_cols=107  Identities=10%  Similarity=0.030  Sum_probs=99.3

Q ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchh
Q psy13451         64 YRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW  143 (522)
Q Consensus        64 ~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW  143 (522)
                      -++..+...+.          +++++.+++.+|+.+|.++.+|..++.++..+   +++++++..++++++++|++..+|
T Consensus         8 ~~g~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~   74 (117)
T d1elwa_           8 EKGNKALSVGN----------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGKGY   74 (117)
T ss_dssp             HHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcCC----------HHHHHHHHHHHHhcCCcchhhhhccccccccc---ccccccchhhhhHHHhccchhhHH
Confidence            45666666666          89999999999999999999999999999999   999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451        144 DYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKL  184 (522)
Q Consensus       144 ~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l  184 (522)
                      .+++-+...++. +++++.++.++++.+|+|..+|...+.+
T Consensus        75 ~~~g~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          75 SRKAAALEFLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999998 7999999999999999999998876543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-11  Score=111.06  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=126.2

Q ss_pred             hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEec-CCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451        327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLS-SLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC  403 (522)
Q Consensus       327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls-~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~  403 (522)
                      +..+..+++|+.|+++++.....++..     .+..+. ..+.+.+. .|.+..++.  +..+++|+.|++++|.+....
T Consensus        46 ~~~f~~l~~L~~L~ls~n~~~~~i~~~-----~f~~l~-~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          46 KGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             TTTTTTCTTCCEEEEESCTTCCEECSS-----SEESCT-TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             hhHhhccchhhhhhhccccccceeecc-----cccccc-ccccccccccccccccccccccccccccccccchhhhcccc
Confidence            345688999999999988765543321     122221 11466654 567877655  789999999999999997433


Q ss_pred             cc-cCCCCCCccEEEcCCCCCCCCC--CCCCCC-CcCEEEccCCCCCccc-----cCcccEE-EcCCCCCCCCCC--CCC
Q psy13451        404 LR-HLTPLVACESLKLTHCSLSSLH--VFPHLP-SLESLDVSHNAPNIIL-----CVYFQSL-KLTHCSLSSLHV--FPH  471 (522)
Q Consensus       404 ~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l~-~L~~L~ls~N~l~~~~-----~~~L~~L-~Ls~n~l~~~~~--l~~  471 (522)
                      +. .+..+..+..+...++.+..++  .+..++ .++.|++++|+++.++     ...++.+ .+++|.++.++.  |.+
T Consensus       120 ~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             CCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcC
Confidence            32 2334566666777788888765  455554 7889999999998776     2444444 578889999876  889


Q ss_pred             CCCCCEEEccCCCCCCCChhhhcCCCCccEEEecC
Q psy13451        472 LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTG  506 (522)
Q Consensus       472 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  506 (522)
                      +++|+.|+|++|+|+.+++..|.+++.|+.+++.+
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999999999999888888888888776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.6e-10  Score=97.18  Aligned_cols=111  Identities=11%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +..+.....+.|+| ++|+..+.++|.++|++..+|+.++.++..++.          +++++..++++|+.+|++..+|
T Consensus        13 l~~~gn~~~~~~~y-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_          13 LKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC----------YGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHhhhccccchhhhhhhhhhHHHHHhccc----------cchHHHHHHHHHHHcccchHHH
Confidence            33455666678888 779999999999999999999999999999988          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTD  151 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~  151 (522)
                      +.++.++..+   +++++++.++++++..+|.|..++.+...+..
T Consensus        82 ~~~g~~~~~~---g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          82 YRRAASNMAL---GKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999   89999999999999999999888877655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-09  Score=91.36  Aligned_cols=108  Identities=11%  Similarity=0.018  Sum_probs=99.6

Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhh
Q psy13451         65 RKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWD  144 (522)
Q Consensus        65 R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~  144 (522)
                      ++..+...+.          +++++..+.++++.+|++..+|+.++.++..+   +++++++..++++++.+|.+..+|.
T Consensus        16 ~gn~~~~~~~----------y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_          16 QANDYFKAKD----------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             HHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCC----------HHHHHHHhhhccccchhhhhhhhhhHHHHHhc---cccchHHHHHHHHHHHcccchHHHH
Confidence            5666666666          89999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        145 YRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       145 ~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      .++.+...++. ++++++++.+++..+|.|..++.....+..
T Consensus        83 ~~g~~~~~~g~-~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          83 RRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999999998 799999999999999999999887665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=5.7e-10  Score=99.25  Aligned_cols=106  Identities=14%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +.+...+..+.|+| ++|+..+.++|.++|++..+|+.|+.++..++.          +++++..++++++.+|++..+|
T Consensus         7 l~~~Gn~~~~~g~~-~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~----------~~~Ai~~~~~al~l~p~~~~a~   75 (201)
T d2c2la1           7 LKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ----------PEQALADCRRALELDGQSVKAH   75 (201)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh----------hhhhhHHHHHHHHhCCCcHHHH
Confidence            34455666777877 889999999999999999999999999999888          7999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR  146 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R  146 (522)
                      .+++-++..+   +++++++..+.++++++|.+...|...
T Consensus        76 ~~lg~~~~~l---~~~~~A~~~~~~al~l~p~~~~~~~~~  112 (201)
T d2c2la1          76 FFLGQCQLEM---ESYDEAIANLQRAYSLAKEQRLNFGDD  112 (201)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             HHHHHHHHHC---CCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            9999999998   889999999999999888776665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.3e-09  Score=91.80  Aligned_cols=130  Identities=10%  Similarity=-0.025  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451         27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW  106 (522)
Q Consensus        27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W  106 (522)
                      +.++.......|++ ++|++.+++   +.|.+..+|+.++.+...++.          +++++..++++|+.+|+++.+|
T Consensus         8 l~~~g~~~~~~~d~-~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~----------~~~A~~~~~kAl~ldp~~~~a~   73 (192)
T d1hh8a_           8 LWNEGVLAADKKDW-KGALDAFSA---VQDPHSRICFNIGCMYTILKN----------MTEAEKAFTRSINRDKHLAVAY   73 (192)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHCCCH-HHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC----------chhHHHHHHHHHHHhhhhhhhH
Confidence            34556666777887 778998886   467778899999999999998          8999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc----------------chhhHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451        107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNF----------------HCWDYRRYVTDRHKVAPLKELNYSTEKIEA  170 (522)
Q Consensus       107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~----------------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~  170 (522)
                      +.|+.+..++   ++++++++.+++++...+.|.                .+|..++.+...++. ++++++.+.++++.
T Consensus        74 ~~~g~~~~~~---g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~-~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          74 FQRGMLYYQT---EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhh---ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc
Confidence            9999999999   999999999999999877664                346678888888887 78899999999998


Q ss_pred             cCCc
Q psy13451        171 NFSN  174 (522)
Q Consensus       171 ~~~n  174 (522)
                      +|..
T Consensus       150 ~~~~  153 (192)
T d1hh8a_         150 KSEP  153 (192)
T ss_dssp             CCSG
T ss_pred             CCCc
Confidence            8864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.98  E-value=6.2e-09  Score=100.82  Aligned_cols=160  Identities=17%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCc
Q psy13451        334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC  413 (522)
Q Consensus       334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  413 (522)
                      .+++.||+++++... ++          .+.+.-++|++++|+|+.+|..  +.+|+.|++++|+++ .++. +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~-lp----------~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~-~l~~-l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LP----------ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK-ALSD-L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC-CC----------SCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-CCCS-C--CTTC
T ss_pred             cCCCEEEeCCCCCCC-CC----------CCCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccc-hhhh-h--cccc
Confidence            468889988875432 22          2211117999999999999863  468999999999988 4443 2  2469


Q ss_pred             cEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCCh-
Q psy13451        414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED-  490 (522)
Q Consensus       414 ~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~-  490 (522)
                      ++|++++|.+..+|.++.+++|+.|++++|.+...+  ...+..+.+..+.......+..++.++.+.+++|.+...+. 
T Consensus       101 ~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~  180 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL  180 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             ccccccccccccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccc
Confidence            999999999999998889999999999999887655  35566777766666555556666777777777666544321 


Q ss_pred             -----------------hhhcCCCCccEEEecCCCCc
Q psy13451        491 -----------------SVFAKYEACVQVILTGNPVS  510 (522)
Q Consensus       491 -----------------~~l~~l~~L~~L~L~~N~l~  510 (522)
                                       ..+..++.|+.+++++|...
T Consensus       181 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         181 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence                             12455677888888887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.4e-09  Score=94.01  Aligned_cols=136  Identities=10%  Similarity=-0.001  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC
Q psy13451         59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDER  138 (522)
Q Consensus        59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k  138 (522)
                      ...|+ ++......+.          +++++..+..+   .|.+..+|+.+|-+...+   ++++++++.|++++++||+
T Consensus         6 ~~l~~-~g~~~~~~~d----------~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~---g~~~~A~~~~~kAl~ldp~   68 (192)
T d1hh8a_           6 ISLWN-EGVLAADKKD----------WKGALDAFSAV---QDPHSRICFNIGCMYTIL---KNMTEAEKAFTRSINRDKH   68 (192)
T ss_dssp             HHHHH-HHHHHHHTTC----------HHHHHHHHHTS---SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHH-HHHHHHHCCC----------HHHHHHHHHhc---CCCCHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhh
Confidence            45675 5777777776          79999998864   667788999999999999   9999999999999999999


Q ss_pred             CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc----------------hHhhHHHHHhchhCCCCCCCCccchhH
Q psy13451        139 NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY----------------SAWHYRSKLLPLLYPDPNNHLPIEQDK  202 (522)
Q Consensus       139 n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~----------------saW~~r~~ll~~l~~~~~~~~~~~~~~  202 (522)
                      +..+|..|+.+...++. ++++++.+++++...+.|.                .+|+.++.+...+            +.
T Consensus        69 ~~~a~~~~g~~~~~~g~-~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~------------~~  135 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK------------EE  135 (192)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT------------TC
T ss_pred             hhhhHHHHHHHHHhhcc-HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC------------CC
Confidence            99999999999999998 7999999999999877664                3467778777777            78


Q ss_pred             HHHHHHHHHHHHhcCCCCcchh
Q psy13451        203 YVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       203 ~~~el~~~~~ai~~~p~~~s~W  224 (522)
                      ++++++.+..|+...|+..-..
T Consensus       136 ~~~A~~~l~~A~~~~~~~~~~~  157 (192)
T d1hh8a_         136 WKKAEEQLALATSMKSEPRHSK  157 (192)
T ss_dssp             HHHHHHHHHHHHTTCCSGGGGH
T ss_pred             HHHHHHHHHHHHhcCCCcchHH
Confidence            9999999999999999865444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.5e-10  Score=94.41  Aligned_cols=102  Identities=21%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             cEEEecCCCcccccC-cCCCCcccEEEecCC-CCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451        368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNN-PLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN  443 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N  443 (522)
                      ..+++++++++.+|. +..+++|+.|++++| .++...+..|.++++|+.|++++|+|+.++  .|..+++|+.|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            468888888888776 888899999999766 488666678999999999999999999985  4788889999999988


Q ss_pred             CCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCC
Q psy13451        444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID  486 (522)
Q Consensus       444 ~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~  486 (522)
                      +++.++...                +. ..+|+.|+|++|.+.
T Consensus        91 ~l~~l~~~~----------------~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKT----------------VQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTT----------------TC-SCCCCEEECCSSCCC
T ss_pred             CCcccChhh----------------hc-cccccccccCCCccc
Confidence            887665321                21 124666777777663

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=6.8e-10  Score=98.74  Aligned_cols=92  Identities=9%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccc
Q psy13451        120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIE  199 (522)
Q Consensus       120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~  199 (522)
                      +++++++..++++++++|+|..+|.+++.+...++. +++++++++++|+.+|.|..||.+++.++..+           
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~-~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l-----------   85 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLGQCQLEM-----------   85 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT-----------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC-----------
Confidence            566666666666666666666666666666666665 46666666666666666666666666666666           


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        200 QDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       200 ~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                       +.+++++.++.+|+.++|++...|
T Consensus        86 -~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          86 -ESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -CCHHHHHHHHHHHHHhCcccHHHH
Confidence             566666666666666666554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.91  E-value=1.2e-08  Score=98.76  Aligned_cols=132  Identities=23%  Similarity=0.292  Sum_probs=107.1

Q ss_pred             cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451        368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI  447 (522)
Q Consensus       368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~  447 (522)
                      +.|++++++|+.+|+  .+++|++|++++|+|+ .+|..+   .+|+.|++++|+++.++.+.  +.|++|++++|.+..
T Consensus        41 ~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          41 HELELNNLGLSSLPE--LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEK  112 (353)
T ss_dssp             SEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSS
T ss_pred             CEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhhc--ccccccccccccccc
Confidence            489999999999997  3578999999999999 677653   58999999999999887543  469999999999987


Q ss_pred             cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      ++    ...|+.|++++|.++..+..  ...+..+.+..+.....  ..++.++.++.+.+++|.+..
T Consensus       113 lp~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         113 LPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS
T ss_pred             ccchhhhccceeeccccccccccccc--cccccchhhcccccccc--ccccccccceecccccccccc
Confidence            76    57899999999998877642  35678888877766554  356678888999998887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=1.4e-08  Score=87.87  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN---------------SLWNYRKEVLLHMKATLAEEELHELVDRELK   90 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~---------------t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~   90 (522)
                      .+.+...+..+.|.| .+|+..|.++|.+-|..+               .++..|+.++..++.          +.+++.
T Consensus        17 ~~~e~G~~~~~~~~~-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~----------~~~Ai~   85 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKY-VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE----------YTKAVE   85 (168)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh----------cccchh
Confidence            444556777788888 889999999998765543               344556666666665          577777


Q ss_pred             HHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcC
Q psy13451         91 LTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHK  154 (522)
Q Consensus        91 ~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~  154 (522)
                      .++.+|+.+|++..+|+.|+.++..+   +++++++..+.++++++|.|-.++..++.+...++
T Consensus        86 ~~~~al~l~p~~~~a~~~~~~~~~~l---~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          86 CCDKALGLDSANEKGLYRRGEAQLLM---NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777   66777777777777777777777666666655543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.7e-08  Score=87.45  Aligned_cols=120  Identities=13%  Similarity=-0.004  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhhccccHHHHHHH
Q psy13451         20 KVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN---------------SLWNYRKEVLLHMKATLAEEELHEL   84 (522)
Q Consensus        20 k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~---------------t~wn~R~~~l~~l~~~~~~~~~~~~   84 (522)
                      |++.=..+.+........|+| ++|+..|.++|.+.|...               .+++.++.+..+++.          
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~-~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~----------   77 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA----------   77 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhh----------
Confidence            344444555666777788888 789999999999988654               344445555555554          


Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~  153 (522)
                      +++++..++.+|..+|.+..+|..+++++..+   +++++++..+++++++||.|..+-.....+...+
T Consensus        78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAV---NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccchhhhHHHHHHHHHh---hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            56666666666666666666666666666666   6666666666666666666665555544444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.86  E-value=2.6e-08  Score=84.67  Aligned_cols=130  Identities=12%  Similarity=0.038  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT  105 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~  105 (522)
                      .+..........|+| ++|+..|.++|.+-|.....-                +........++.            ..+
T Consensus        19 ~~~~~G~~~f~~~~y-~~A~~~Y~~al~~~~~~~~~~----------------~~~~~~~~~~~~------------~~~   69 (153)
T d2fbna1          19 DIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWD----------------DQILLDKKKNIE------------ISC   69 (153)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCC----------------CHHHHHHHHHHH------------HHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcchhhhh----------------hHHHHHhhhhHH------------HHH
Confidence            333445555677888 789999999998766433100                000000011111            125


Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL  185 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll  185 (522)
                      +..++.++.++   +.++++++.|++++++||.|..||..++.+...++. +++++.++.++++++|+|-.++.....+.
T Consensus        70 ~~Nla~~~~~l---~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          70 NLNLATCYNKN---KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHh---cccchhhhhhhccccccchhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56778888777   778888888888888888888888888888888887 67888888888888888888877776666


Q ss_pred             chh
Q psy13451        186 PLL  188 (522)
Q Consensus       186 ~~l  188 (522)
                      .++
T Consensus       146 ~kl  148 (153)
T d2fbna1         146 NKL  148 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=9.7e-09  Score=86.50  Aligned_cols=101  Identities=11%  Similarity=0.122  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCC--
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRA--  119 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~--  119 (522)
                      ++|+..+++++.++|++..+|+.++.++..++......+..+.+++++..++++++++|+++.+|+.++.++..+ +.  
T Consensus        14 e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~-g~~~   92 (145)
T d1zu2a1          14 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF-AFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHC
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc-ccch
Confidence            789999999999999999999999999998876554555667789999999999999999999999999998765 10  


Q ss_pred             -------CChHHHHHHHHHHHhhcCCCcchh
Q psy13451        120 -------PNYEKELELCNYYLELDERNFHCW  143 (522)
Q Consensus       120 -------~~~~~el~~~~~~l~~d~kn~~aW  143 (522)
                             ..++++++++.++++++|.|-.++
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~  123 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYL  123 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHH
Confidence                   124555555555555555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.5e-10  Score=107.20  Aligned_cols=173  Identities=15%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc--ccCcCCCCcccEEEecCC-CCCCccc-ccC
Q psy13451        332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IHHMHCFAHCKQVDLSNN-PLTNNCL-RHL  407 (522)
Q Consensus       332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~--l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~  407 (522)
                      ...+|+.||++++..........  ....+++    ++|++++|.++.  +..+..+++|+.|++++| .++.... ..+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l--~~~c~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGI--LSQCSKL----QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHH--HTTBCCC----SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHH--HHhCCCc----ccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhh
Confidence            34578899988776544332222  1122222    589999998875  333777889999999985 5553221 223


Q ss_pred             CCCCCccEEEcCCC-CCCCC--C-CC-CCCCCcCEEEccCCC--CCc--c-----ccCcccEEEcCCCC-CCCCC--CCC
Q psy13451        408 TPLVACESLKLTHC-SLSSL--H-VF-PHLPSLESLDVSHNA--PNI--I-----LCVYFQSLKLTHCS-LSSLH--VFP  470 (522)
Q Consensus       408 ~~l~~L~~L~l~~n-~l~~~--~-~~-~~l~~L~~L~ls~N~--l~~--~-----~~~~L~~L~Ls~n~-l~~~~--~l~  470 (522)
                      ..+++|+.|+++++ .++..  . .+ ...+.|+.|+++++.  ++.  +     .+++|+.|++++|. +++..  .+.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            46789999999986 44431  1 12 234689999998753  432  1     16889999999975 66533  377


Q ss_pred             CCCCCCEEEccCC-CCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451        471 HLPSLESLDVSHN-AIDHIEDSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       471 ~~~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      .+++|++|+|++| .|++.....++.+++|+.|+++++ ++.
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH
Confidence            8899999999995 687766667888999999999887 443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.81  E-value=1.5e-08  Score=81.21  Aligned_cols=96  Identities=2%  Similarity=-0.109  Sum_probs=90.1

Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      ...|.+++.++.+.   +++.+++.++++++..+|++..+|.+++.+....+. +++++.++.++++.+|.+..+|..++
T Consensus        16 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          16 HENPMEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CSCHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-HHHhhcccccccccccccccchHHHH
Confidence            46678888888888   999999999999999999999999999999999998 79999999999999999999999999


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHH
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV  214 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai  214 (522)
                      .+....            +.++++++++++++
T Consensus        92 ~~y~~~------------g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNE------------HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHH------------HHHHHHHHHHHHHH
T ss_pred             HHHHHC------------CCHHHHHHHHHHHh
Confidence            999988            89999999999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2e-09  Score=101.86  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=108.6

Q ss_pred             hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCC-Cccc--ccC-cCCCCcccEEEecCCC-CC
Q psy13451        326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL-QLTS--IHH-MHCFAHCKQVDLSNNP-LT  400 (522)
Q Consensus       326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n-~l~~--l~~-~~~l~~L~~L~Ls~n~-l~  400 (522)
                      ...++..+++|+.|++.++.........+..   .+.+    +.|++++| .++.  +.. ...+++|+.|++++|. ++
T Consensus        63 l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~---~~~L----~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2          63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK---NSNL----VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT---CTTC----SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHHHHHhCCCcccccccccCCCcHHHHHHhc---CCCC----cCccccccccccccccchhhHHHHhccccccccccccc
Confidence            4566788899999998887655433332221   1222    58999885 6764  333 4567889999998863 44


Q ss_pred             Ccc-cccCC-CCCCccEEEcCCCC--CCC--CCC-CCCCCCcCEEEccCCC-CCcc------ccCcccEEEcCCC-CCCC
Q psy13451        401 NNC-LRHLT-PLVACESLKLTHCS--LSS--LHV-FPHLPSLESLDVSHNA-PNII------LCVYFQSLKLTHC-SLSS  465 (522)
Q Consensus       401 ~~~-~~~~~-~l~~L~~L~l~~n~--l~~--~~~-~~~l~~L~~L~ls~N~-l~~~------~~~~L~~L~Ls~n-~l~~  465 (522)
                      ... ...+. ..+.|+.|+++++.  ++.  +.. +..+++|++|++++|. ++..      .+++|+.|++++| .+++
T Consensus       136 ~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            221 12222 24678899988752  333  222 3457889999998864 5421      1578899999986 5665


Q ss_pred             CC--CCCCCCCCCEEEccCCCCCCCChhh-hcCCCCccEEEecCCCCc
Q psy13451        466 LH--VFPHLPSLESLDVSHNAIDHIEDSV-FAKYEACVQVILTGNPVS  510 (522)
Q Consensus       466 ~~--~l~~~~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~  510 (522)
                      ..  .++.+++|+.|+++++ +++..... ...+|+|+   +..++++
T Consensus       216 ~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         216 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             HHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCC
Confidence            43  2777889999999887 55433222 34566654   4555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.77  E-value=2.4e-08  Score=80.00  Aligned_cols=90  Identities=12%  Similarity=0.038  Sum_probs=53.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH
Q psy13451         30 TIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR  109 (522)
Q Consensus        30 ~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R  109 (522)
                      ......++|++ ++|+..+++++.++|++..+|..++.++...+.          +++++..++++++.+|.+..+|..+
T Consensus        22 ~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          22 EGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEK----------DGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhhh-HHHHHHHhhhcccccccchhhhhhhhhhhhhhh----------HHHhhcccccccccccccccchHHH
Confidence            33444445554 555666666666666666666666666665555          4566666666666666666666666


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHH
Q psy13451        110 CYVLDHISRAPNYEKELELCNYYL  133 (522)
Q Consensus       110 ~~il~~l~~~~~~~~el~~~~~~l  133 (522)
                      +.+....   ++++++++.++++|
T Consensus        91 a~~y~~~---g~~~~A~~~l~~~l  111 (112)
T d1hxia_          91 AVSHTNE---HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHC---CCHHHHHHHHHHHh
Confidence            6666665   55566666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=2e-09  Score=104.72  Aligned_cols=182  Identities=16%  Similarity=0.163  Sum_probs=126.5

Q ss_pred             HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccc---------cC------cCCCCcccE
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSI---------HH------MHCFAHCKQ  391 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l---------~~------~~~l~~L~~  391 (522)
                      +.+..+++|+.||+.++.........+..  .+..  .+. +.|++++|.++..         ..      ....+.|+.
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~  162 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLID--FLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  162 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHH--HHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHhhCCCcccccccccccccccccchhh--hhcc--cccchheecccccccccccccccccccccccccccccCcccce
Confidence            44556788999998888665442222211  1111  122 6899999987631         00      235678999


Q ss_pred             EEecCCCCCCccc----ccCCCCCCccEEEcCCCCCCCC-------CCCCCCCCcCEEEccCCCCCcc----------cc
Q psy13451        392 VDLSNNPLTNNCL----RHLTPLVACESLKLTHCSLSSL-------HVFPHLPSLESLDVSHNAPNII----------LC  450 (522)
Q Consensus       392 L~Ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~ls~N~l~~~----------~~  450 (522)
                      +++++|.++....    ..+...++|+.|++++|.++..       ..+..+++|+.|++++|.++..          ..
T Consensus       163 l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         163 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             eecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence            9999998874322    2345678899999999998752       2467788999999999998631          25


Q ss_pred             CcccEEEcCCCCCCCCCC------C--CCCCCCCEEEccCCCCCCCCh----hhh-cCCCCccEEEecCCCCcccc
Q psy13451        451 VYFQSLKLTHCSLSSLHV------F--PHLPSLESLDVSHNAIDHIED----SVF-AKYEACVQVILTGNPVSADM  513 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~~------l--~~~~~L~~L~Ls~N~l~~~~~----~~l-~~l~~L~~L~L~~N~l~~~~  513 (522)
                      ++|+.|++++|.|++.+.      +  ...+.|++|++++|.|+....    ..+ .+++.|+.|+|++|.++.+.
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            789999999999987432      2  234689999999999886432    223 35788999999999997654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=1.9e-08  Score=84.69  Aligned_cols=104  Identities=8%  Similarity=-0.062  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC
Q psy13451         83 ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV  155 (522)
Q Consensus        83 ~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~  155 (522)
                      ..+++++..++.+++.+|++..+|+.++.++..+.       ....+++++..+++++++||++..+|...+.++..++.
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            44899999999999999999999999999997651       01346899999999999999999999999999977542


Q ss_pred             ----------CCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        156 ----------APLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       156 ----------~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                                .+++++++++++++.+|.|..++...+....
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k  131 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  131 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999887766554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.72  E-value=7.5e-08  Score=81.66  Aligned_cols=99  Identities=9%  Similarity=-0.106  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451         61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF  140 (522)
Q Consensus        61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~  140 (522)
                      .|.-+|..+...+.          +.+++..+..+|...|.....-. .               ......+.+.     .
T Consensus        19 ~~~~~G~~~f~~~~----------y~~A~~~Y~~al~~~~~~~~~~~-~---------------~~~~~~~~~~-----~   67 (153)
T d2fbna1          19 DIKEEGNEFFKKNE----------INEAIVKYKEALDFFIHTEEWDD-Q---------------ILLDKKKNIE-----I   67 (153)
T ss_dssp             HHHHHHHHHHHTTC----------HHHHHHHHHHHHHTTTTCTTCCC-H---------------HHHHHHHHHH-----H
T ss_pred             HHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCcchhhhhh-H---------------HHHHhhhhHH-----H
Confidence            34445665555555          78899999998887665432111 0               0000111111     1


Q ss_pred             chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        141 HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       141 ~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      .++..++.+...++. +++++++++++|+.||.|.-||+.++.++..+...
T Consensus        68 ~~~~Nla~~~~~l~~-~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~  117 (153)
T d2fbna1          68 SCNLNLATCYNKNKD-YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL  117 (153)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHhhHHHHHHHhcc-cchhhhhhhccccccchhhhhhHHhHHHHHHcCCH
Confidence            366788999999887 78999999999999999999999999998887554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.6e-08  Score=82.32  Aligned_cols=103  Identities=17%  Similarity=0.034  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc--hhhHHHHHHHhcCCCCHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH--CWDYRRYVTDRHKVAPLKELN  162 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~--aW~~R~~~l~~~~~~~~~el~  162 (522)
                      ++++-+.+.++|..+|++..+.+..+|++.+.....++++++..+++++..+|.+.+  +|.+.+.+...+|. ++++++
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-~~~A~~   93 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALK   93 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-hHHHHH
Confidence            788899999999999999999999999997641125678899999999999998865  99999999999998 799999


Q ss_pred             HHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        163 YSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       163 ~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      +++++++++|.|..|...++.+...+
T Consensus        94 ~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          94 YVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999998777655

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=8.5e-08  Score=82.74  Aligned_cols=125  Identities=16%  Similarity=0.046  Sum_probs=83.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451         31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC  110 (522)
Q Consensus        31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~  110 (522)
                      .......|.| ++|++.+.++|.+.+..                            ............+|....+|..|+
T Consensus        34 ~~~~~~~~~y-~~Ai~~y~~al~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~nla   84 (169)
T d1ihga1          34 GNTFFKSQNW-EMAIKKYTKVLRYVEGS----------------------------RAAAEDADGAKLQPVALSCVLNIG   84 (169)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHHHHH----------------------------HHHSCHHHHGGGHHHHHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHhhhhh----------------------------hhhhhhHHHHHhChhhHHHHHHHH
Confidence            3344566777 77899998888642211                            111111222344555666777777


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      .+..++   +++++++..|+++++++|.+..+|..++.+...++. ++++++.+.++++.+|.|..+......+...+
T Consensus        85 ~~~~~~---~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          85 ACKLKM---SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhh---cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            777777   777777777777777777777777777777777777 57777777777777777777777666665443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.5e-08  Score=79.59  Aligned_cols=108  Identities=12%  Similarity=0.017  Sum_probs=92.3

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc--cchhhHHHH
Q psy13451         35 RKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY--GTWFQRCYV  112 (522)
Q Consensus        35 ~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y--~~W~~R~~i  112 (522)
                      .+.+++ ++|-+.|.++|.++|++..+.+..+.+|...+..       .-+++++..++.++..+|++.  .+|+..+.+
T Consensus        10 ~~~~~l-~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~-------~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_          10 VSVEDL-LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-------DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             cCHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            344444 7888999999999999999999999998753221       115789999999999998875  489999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451        113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus       113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~  153 (522)
                      ..++   +++++++.+++++|+++|.|..|...++.|.+.+
T Consensus        82 y~~~---g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          82 NYRL---KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHH---hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999   9999999999999999999999999998887764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.4e-07  Score=77.65  Aligned_cols=116  Identities=13%  Similarity=-0.032  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh---------------hHHHHHHHhcCCCChH
Q psy13451         59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF---------------QRCYVLDHISRAPNYE  123 (522)
Q Consensus        59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~---------------~R~~il~~l~~~~~~~  123 (522)
                      ...++.+|..+...+.          +++++..+..+|...|.....+.               .++-+..++   ++++
T Consensus        13 a~~l~~~G~~~~~~~~----------~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~---~~~~   79 (170)
T d1p5qa1          13 STIVKERGTVYFKEGK----------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL---QAFS   79 (170)
T ss_dssp             HHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT---TCHH
T ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhh---hhcc
Confidence            4556677888777777          79999999999999998776554               356666666   8999


Q ss_pred             HHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        124 KELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       124 ~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      +++..++++++++|.|..+|..++.+...++. +++++.++.++++.+|.|..+......+...+
T Consensus        80 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          80 AAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 79999999999999999999988877776655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.60  E-value=3.1e-09  Score=103.34  Aligned_cols=146  Identities=16%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             cEEEecCCCcccc-----cC-cCCCCcccEEEecCCCCCCccccc-------------CCCCCCccEEEcCCCCCCCCC-
Q psy13451        368 QITNLSSLQLTSI-----HH-MHCFAHCKQVDLSNNPLTNNCLRH-------------LTPLVACESLKLTHCSLSSLH-  427 (522)
Q Consensus       368 ~~L~ls~n~l~~l-----~~-~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~-  427 (522)
                      +.|++++|.++..     .. +...++|+.|++++|.++......             ....+.|+.+.+++|.++.-. 
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence            6788888877752     22 445678888888888765221111             124567888888888776531 


Q ss_pred             -----CCCCCCCcCEEEccCCCCCcc-----------ccCcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCC
Q psy13451        428 -----VFPHLPSLESLDVSHNAPNII-----------LCVYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAI  485 (522)
Q Consensus       428 -----~~~~l~~L~~L~ls~N~l~~~-----------~~~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l  485 (522)
                           .+...+.|+.|++++|.++.-           ..++|+.|+|++|.++...      .+..+++|+.|+|++|.|
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence                 245567889999999988631           1467899999999886532      166788899999999998


Q ss_pred             CCCChh----hhcC--CCCccEEEecCCCCcccc
Q psy13451        486 DHIEDS----VFAK--YEACVQVILTGNPVSADM  513 (522)
Q Consensus       486 ~~~~~~----~l~~--l~~L~~L~L~~N~l~~~~  513 (522)
                      ++....    .+..  .+.|+.|++++|.++...
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            875422    2332  367899999999887543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.58  E-value=5.8e-07  Score=77.24  Aligned_cols=115  Identities=14%  Similarity=0.019  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc---------------chhhHHHHHHHhcCCCChHH
Q psy13451         60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG---------------TWFQRCYVLDHISRAPNYEK  124 (522)
Q Consensus        60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~---------------~W~~R~~il~~l~~~~~~~~  124 (522)
                      ....-+|..+...+.          +.+++..+..+|...|..+.               ++..++-|+.++   +++.+
T Consensus        16 ~~~~e~G~~~~~~~~----------~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l---~~~~~   82 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGK----------YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL---REYTK   82 (168)
T ss_dssp             HHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHH
T ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh---hhccc
Confidence            345566777777766          78888899888887666553               456788888888   99999


Q ss_pred             HHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451        125 ELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL  188 (522)
Q Consensus       125 el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l  188 (522)
                      ++..|++++++||.|..+|..|+.+...++. ++++++++.+++..+|.|-.++..+..+...+
T Consensus        83 Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          83 AVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 79999999999999999999999988877666

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.2e-07  Score=76.04  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH
Q psy13451         30 TIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR  109 (522)
Q Consensus        30 ~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R  109 (522)
                      ...+....|+| ++|+.+++++|.++|++..+|..|+.++..++.          +++++..++.++..+|++..+|...
T Consensus        10 ~G~~~~~~~~y-~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_          10 LGNDAYKKKDF-DTALKHYDKAKELDPTNMTYITNQAAVYFEKGD----------YNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc----------hHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34556677888 899999999999999999999999999999998          8999999999999999999999888


Q ss_pred             HHHHHHhc----CCCChHHHHHHHHHHHhhcCC
Q psy13451        110 CYVLDHIS----RAPNYEKELELCNYYLELDER  138 (522)
Q Consensus       110 ~~il~~l~----~~~~~~~el~~~~~~l~~d~k  138 (522)
                      +.++..+.    ....+++++.++++++..++.
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            77765541    126788888888888877653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=1.6e-07  Score=81.00  Aligned_cols=85  Identities=13%  Similarity=-0.071  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      +++++..+..+|+..+.                     .............+|.+..+|..|+.+...++. +++++.++
T Consensus        43 y~~Ai~~y~~al~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~  100 (169)
T d1ihga1          43 WEMAIKKYTKVLRYVEG---------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-WQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHHHHHH---------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhh---------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc-cchhhhhh
Confidence            68888888888764221                     112222334556788889999999999999998 79999999


Q ss_pred             HHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        165 TEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       165 ~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      +++|+.+|.+..||..++.++..+...
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~~~  127 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLKEY  127 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHccCH
Confidence            999999999999999999999888443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-07  Score=95.94  Aligned_cols=135  Identities=7%  Similarity=-0.108  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHH
Q psy13451         84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNY  163 (522)
Q Consensus        84 ~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~  163 (522)
                      +|+.++..+.+.+..+|+++.+|...+.+....   ++..+++..+.+++..+|  ++++.+.|.+....+. +++++.+
T Consensus       101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~-~~~A~~~  174 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ---THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ-TSQAESY  174 (497)
T ss_dssp             HHHHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhC---CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc-HHHHHHH
Confidence            345555555555568899999999999988887   778899999999998886  5799999999999887 7999999


Q ss_pred             HHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451        164 STEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS  236 (522)
Q Consensus       164 ~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~  236 (522)
                      +.++++.+|++..+|++.+.+....            +...+++.++.+|+..+|....|+....-++.+..+
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~------------~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSK------------GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHT------------TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999887            788999999999999999999999999988876443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.1e-06  Score=80.10  Aligned_cols=156  Identities=8%  Similarity=-0.065  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-chhhHHHHHHHhcC
Q psy13451         41 DDEALSLTSEVLR-NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-TWFQRCYVLDHISR  118 (522)
Q Consensus        41 ~~eal~~~~~~l~-~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-~W~~R~~il~~l~~  118 (522)
                      .++|.+.+++++. .+|+...+|..-..+....+.          .+++...++.+|...|+++. +|.....++.+.  
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~----------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~--  147 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--  147 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--
Confidence            3678899999997 489999999998888888777          68899999999999999865 899999998888  


Q ss_pred             CCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCcc
Q psy13451        119 APNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI  198 (522)
Q Consensus       119 ~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~  198 (522)
                       +.++++.+.+.++++..|.+.+.|...+.+........+.+...+++++..+|.+...|..-..++...          
T Consensus       148 -~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~----------  216 (308)
T d2onda1         148 -EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----------  216 (308)
T ss_dssp             -HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------
T ss_pred             -CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc----------
Confidence             788999999999999999999999988877655544357788999999999999999998877776665          


Q ss_pred             chhHHHHHHHHHHHHHhcCCCCc
Q psy13451        199 EQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       199 ~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                        +.++++-..+++|+...|.+.
T Consensus       217 --g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         217 --NEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             --CCHHHHHHHHHHHHHSSSSCG
T ss_pred             --CChHHHHHHHHHHHHhCCCCh
Confidence              667889999999999887664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.9e-07  Score=73.89  Aligned_cols=101  Identities=14%  Similarity=0.068  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451         61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF  140 (522)
Q Consensus        61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~  140 (522)
                      .+.-.|..+...+.          +++++.+++.+|..+|++..+|.+|+.++.++   ++|++++..|+++++++|++.
T Consensus         6 ~~k~~G~~~~~~~~----------y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           6 KEKELGNDAYKKKD----------FDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc---CchHHHHHHHHHHHHhCcccH
Confidence            34455666666666          89999999999999999999999999999999   999999999999999999999


Q ss_pred             chhhHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCc
Q psy13451        141 HCWDYRRYVTDRHKV------APLKELNYSTEKIEANFSN  174 (522)
Q Consensus       141 ~aW~~R~~~l~~~~~------~~~~el~~~~~~i~~~~~n  174 (522)
                      .+|...+.++..++.      .++++++++.+++..++..
T Consensus        73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            999887776655432      2688888888888877644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.7e-08  Score=97.24  Aligned_cols=184  Identities=19%  Similarity=0.109  Sum_probs=120.4

Q ss_pred             HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC------cCCCCcccEEEecCCCCCC
Q psy13451        328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH------MHCFAHCKQVDLSNNPLTN  401 (522)
Q Consensus       328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~------~~~l~~L~~L~Ls~n~l~~  401 (522)
                      ..+...+.++.+++..+............  .........+.+++++|.+...+.      +...+.++.+++++|.++.
T Consensus       220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~--~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         220 GIVASKASLRELALGSNKLGDVGMAELCP--GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             ccccccccccccchhhccccccccchhhc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34455677777777776654432221111  011111111689999998875321      4567788999999998864


Q ss_pred             ccccc-----CCCCCCccEEEcCCCCCCCCC------CCCCCCCcCEEEccCCCCCcc-----------ccCcccEEEcC
Q psy13451        402 NCLRH-----LTPLVACESLKLTHCSLSSLH------VFPHLPSLESLDVSHNAPNII-----------LCVYFQSLKLT  459 (522)
Q Consensus       402 ~~~~~-----~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~ls~N~l~~~-----------~~~~L~~L~Ls  459 (522)
                      .....     ......|+.+++++|.++...      .+...++|+.|+|++|.++..           ....|+.|+|+
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence            32221     123467899999999887632      234556899999999998631           13568999999


Q ss_pred             CCCCCCCC-----C-CCCCCCCCEEEccCCCCCCCChhh----hc-CCCCccEEEecCCCCcccc
Q psy13451        460 HCSLSSLH-----V-FPHLPSLESLDVSHNAIDHIEDSV----FA-KYEACVQVILTGNPVSADM  513 (522)
Q Consensus       460 ~n~l~~~~-----~-l~~~~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~L~~N~l~~~~  513 (522)
                      +|.|++.+     . +..+++|++|+|++|.|++.....    +. ....|+.|++.+|.+..+.
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            99998632     1 556789999999999998743222    32 2346999999999987544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=7.9e-06  Score=77.17  Aligned_cols=182  Identities=9%  Similarity=-0.019  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHHh-CCCCccchhhHHHHHHHh
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT----LAEEELHELVDRELKLTKDCLLA-QPKSYGTWFQRCYVLDHI  116 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~----~~~~~~~~~~~~eL~~~~~~l~~-~pk~y~~W~~R~~il~~l  116 (522)
                      .++...++++|...|.+..+|..--..+...+..    ..........+++...++.+++. .|++..+|..-..+....
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            4577899999999999999998666655543221    01122344578889999999974 899999999888888887


Q ss_pred             cCCCChHHHHHHHHHHHhhcCCCcc-hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCC
Q psy13451        117 SRAPNYEKELELCNYYLELDERNFH-CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNH  195 (522)
Q Consensus       117 ~~~~~~~~el~~~~~~l~~d~kn~~-aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~  195 (522)
                         +.++++...++++++..|++++ +|.....++...+. .+++.+.+.++++..|.+...|...+.+.....      
T Consensus       113 ---~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~-~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~------  182 (308)
T d2onda1         113 ---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS------  182 (308)
T ss_dssp             ---TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS------
T ss_pred             ---ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc------
Confidence               8899999999999999999976 79888888888776 588899999999999999999987766544331      


Q ss_pred             CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcc
Q psy13451        196 LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPV  238 (522)
Q Consensus       196 ~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~  238 (522)
                           +..+.+...+.+++..+|.+...|.....++...+...
T Consensus       183 -----~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         183 -----KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             -----cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence                 35678899999999999999999988877776665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.19  E-value=2.8e-06  Score=71.73  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy13451         26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI------------NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTK   93 (522)
Q Consensus        26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~------------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~   93 (522)
                      ..++........|+| ++|+..++++|.++|+.            ..+|+.++.++..++.          +++++..++
T Consensus        11 ~~l~~g~~~~~~g~y-~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~----------~~~A~~~~~   79 (156)
T d2hr2a1          11 LALSDAQRQLVAGEY-DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS----------FDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc----------cchhhHhhh
Confidence            344556666777888 77999999999999875            4689999999999988          677888888


Q ss_pred             HHHHhCCCCc-----------cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh
Q psy13451         94 DCLLAQPKSY-----------GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR  152 (522)
Q Consensus        94 ~~l~~~pk~y-----------~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~  152 (522)
                      .+|...|+..           .+++.|+.++..+   ++++++++.++++++++|+....+.-+.-+...
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l---g~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~  146 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL---GRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  146 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHH
Confidence            8877655432           3567788888888   889999999999999988888777655555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=3e-05  Score=72.37  Aligned_cols=167  Identities=8%  Similarity=0.023  Sum_probs=117.0

Q ss_pred             HHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC-----
Q psy13451         34 KRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS-----  102 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~-----  102 (522)
                      .+..+++ ++|++.+.+++.+      .|+..++|+..+.+...++.          +++++..+..++.+.++.     
T Consensus        47 y~~~~~~-~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN----------SVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHCcCH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC----------cHHHHHHHHHhhHHhhhcccchh
Confidence            3455666 8999999999998      35567889999999999887          688888888888876665     


Q ss_pred             -ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451        103 -YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY  175 (522)
Q Consensus       103 -y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~  175 (522)
                       ..++..-+-++..  ..++++++++++.+++++.++.      ..++...+.+....+. ++++++.+.+++...+.+.
T Consensus       116 ~~~~~~~l~~~~~~--~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         116 GANFKFELGEILEN--DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccch
Confidence             3344444544433  1388999999999999876543      3457778888888887 7999999999999987765


Q ss_pred             h-Hh------hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhH
Q psy13451        176 S-AW------HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY  226 (522)
Q Consensus       176 s-aW------~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y  226 (522)
                      . .|      ...+.+....            +.+..+...+.+++..+|....++-|
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~------------~d~~~A~~~~~~~~~~~~~~~~sre~  238 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAA------------TDAVAAARTLQEGQSEDPNFADSRES  238 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHGGGCC---------H
T ss_pred             hhhhhHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhCCCccchHHH
Confidence            2 12      2222221122            57888999999999999987776544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.2e-07  Score=79.49  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             CCCCCCccEEEcCCCCCCCCCCC----CCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccC
Q psy13451        407 LTPLVACESLKLTHCSLSSLHVF----PHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH  482 (522)
Q Consensus       407 ~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~  482 (522)
                      +..++.|+.|++++|+|+.++++    ..+++|+.|++++|.|+.++.-               . +.....|+.|++++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l---------------~-~l~~~~L~~L~L~~  124 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL---------------D-KIKGLKLEELWLDG  124 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH---------------H-HHTTCCCSSCCCTT
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh---------------h-hhhccccceeecCC
Confidence            34566777777777777766432    3455566666665555443210               0 11223567777777


Q ss_pred             CCCCCCCh-------hhhcCCCCccEEE
Q psy13451        483 NAIDHIED-------SVFAKYEACVQVI  503 (522)
Q Consensus       483 N~l~~~~~-------~~l~~l~~L~~L~  503 (522)
                      |+++....       ..+..+|+|+.||
T Consensus       125 Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         125 NSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             STTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            77765431       3356677777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1e-06  Score=87.78  Aligned_cols=145  Identities=15%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             cEEEecCCCccc------ccC-cCCCCcccEEEecCCCCCCccc----ccCCCCCCccEEEcCCCCCCCCC------C-C
Q psy13451        368 QITNLSSLQLTS------IHH-MHCFAHCKQVDLSNNPLTNNCL----RHLTPLVACESLKLTHCSLSSLH------V-F  429 (522)
Q Consensus       368 ~~L~ls~n~l~~------l~~-~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~------~-~  429 (522)
                      +.+.+++|.+..      ++. ......++.+++++|.+.....    ..+...+.+..+++++|.++...      . .
T Consensus       229 ~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~  308 (460)
T d1z7xw1         229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  308 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence            588888887653      122 4567789999999998873322    23445788999999999987521      1 2


Q ss_pred             CCCCCcCEEEccCCCCCccc----------cCcccEEEcCCCCCCCCCC------C-CCCCCCCEEEccCCCCCCCC---
Q psy13451        430 PHLPSLESLDVSHNAPNIIL----------CVYFQSLKLTHCSLSSLHV------F-PHLPSLESLDVSHNAIDHIE---  489 (522)
Q Consensus       430 ~~l~~L~~L~ls~N~l~~~~----------~~~L~~L~Ls~n~l~~~~~------l-~~~~~L~~L~Ls~N~l~~~~---  489 (522)
                      ...+.|+.+++++|.++...          ..+|+.|+|++|.|++.+.      + ...+.|+.|+|++|.|++..   
T Consensus       309 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  388 (460)
T d1z7xw1         309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  388 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHH
Confidence            34468999999999887432          3689999999999976321      2 34678999999999998743   


Q ss_pred             -hhhhcCCCCccEEEecCCCCccc
Q psy13451        490 -DSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       490 -~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                       ...+..+++|+.|+|++|+|+..
T Consensus       389 l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         389 LAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHhcCCCCCEEECCCCcCCHH
Confidence             23466789999999999999854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.1e-07  Score=79.69  Aligned_cols=63  Identities=24%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             cCcccEEEcCCCCCCCCCC----CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451        450 CVYFQSLKLTHCSLSSLHV----FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD  512 (522)
Q Consensus       450 ~~~L~~L~Ls~n~l~~~~~----l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  512 (522)
                      ++.|+.|+|++|+|+++.+    +..+++|+.|+|++|.|++++...+.....|+.|++++|++.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            5677888888888877654    45688999999999999998754445556799999999999754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.4e-05  Score=79.20  Aligned_cols=134  Identities=9%  Similarity=-0.093  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN  121 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~  121 (522)
                      +.|+..+.+++.++|++..+|+..+.+....+.          ..+++..+..++..+|  +.++.+.|.+....   ++
T Consensus       103 ~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~---~~  167 (497)
T d1ya0a1         103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH----------TSAIVKPQSSSCSYIC--QHCLVHLGDIARYR---NQ  167 (497)
T ss_dssp             HHHHHHHTC-----------------------------------------CCHHHHHHH--HHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC----------HHHHHHHHHHHhCCCH--HHHHHHHHHHHHHc---cc
Confidence            344555555667899999999999998888776          4677777777777665  57889999998888   89


Q ss_pred             hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451        122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD  191 (522)
Q Consensus       122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~  191 (522)
                      +++++.+|.++++++|.+..+|++.|.+....+. ..+++.++.+++..+|....|+.+...++.+....
T Consensus       168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999888 68999999999999999999999999998877544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.92  E-value=9.9e-06  Score=68.24  Aligned_cols=98  Identities=8%  Similarity=-0.042  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhCCCCc------------cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-----------
Q psy13451         85 VDRELKLTKDCLLAQPKSY------------GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH-----------  141 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y------------~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-----------  141 (522)
                      +++++..++++|.++|+.+            .+|+.++.++..+   +++++++..+++++...|++..           
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---RSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc---CccchhhHhhhhhhhcccccccccccccchhHH
Confidence            8999999999999998865            4678889999998   9999999999999998876544           


Q ss_pred             hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451        142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP  186 (522)
Q Consensus       142 aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~  186 (522)
                      ++..++-+...+++ ++++++++.+++++.|.....+-.+..++.
T Consensus       102 a~~~~g~~~~~lg~-~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~  145 (156)
T d2hr2a1         102 AVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERMME  145 (156)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             HHhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHhhchHHHHHHHHH
Confidence            56788999999998 799999999999998887776655444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=3e-05  Score=66.03  Aligned_cols=59  Identities=8%  Similarity=0.012  Sum_probs=37.7

Q ss_pred             CcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCCCCCC-------hhhhcCCCCccEEEecCCCC
Q psy13451        451 VYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAIDHIE-------DSVFAKYEACVQVILTGNPV  509 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l~~~~-------~~~l~~l~~L~~L~L~~N~l  509 (522)
                      +.|+.|+|++|.|++.+      .+...++|+.|+|++|.+..+.       ...+...++|+.|+++.+..
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            44555555555555422      1566778888888888766553       23455568888888877644

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=0.0004  Score=59.45  Aligned_cols=128  Identities=5%  Similarity=-0.178  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451         21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP  100 (522)
Q Consensus        21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p  100 (522)
                      +..|.............|.+ ++|.+.+.++|.+.|...-.+..-...+                ..      ......+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~-e~A~~~~~~AL~l~rG~~l~~~~~~~w~----------------~~------~r~~l~~   64 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRF-EQASRHLSAALREWRGPVLDDLRDFQFV----------------EP------FATALVE   64 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCSSTTGGGTTSTTH----------------HH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcccccccCcchHHH----------------HH------HHHHHHH
Confidence            56788888888888888888 7899999999999886643321110000                00      0111112


Q ss_pred             CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHH-------HHhcCC
Q psy13451        101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEK-------IEANFS  173 (522)
Q Consensus       101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~-------i~~~~~  173 (522)
                      ....+|..+.-++..+   +++++++.+++++++.||.+-.+|...+.++...|+ ..+++..|.+.       +..+|+
T Consensus        65 ~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIAC---GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCcC
Confidence            2235677777777777   888888888888888888888888888888888887 57777777665       557776


Q ss_pred             cc
Q psy13451        174 NY  175 (522)
Q Consensus       174 n~  175 (522)
                      .-
T Consensus       141 ~~  142 (179)
T d2ff4a2         141 PT  142 (179)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00013  Score=55.47  Aligned_cols=77  Identities=14%  Similarity=-0.030  Sum_probs=61.8

Q ss_pred             hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHh
Q psy13451        106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH-------CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW  178 (522)
Q Consensus       106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-------aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW  178 (522)
                      ++..|.+..+.   +++.+++.+++++++++|.+..       ++.+.+++...++. +++++++++++++.+|.|..|+
T Consensus         8 c~~lG~~~~~~---g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           8 SFELGKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHhCcCCHHHH
Confidence            45567777777   8899999999999998877644       46677888888887 7899999999999999999999


Q ss_pred             hHHHHHhc
Q psy13451        179 HYRSKLLP  186 (522)
Q Consensus       179 ~~r~~ll~  186 (522)
                      ++...+-.
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00016  Score=54.85  Aligned_cols=78  Identities=14%  Similarity=-0.015  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-------chhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451         62 WNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-------TWFQRCYVLDHISRAPNYEKELELCNYYLE  134 (522)
Q Consensus        62 wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-------~W~~R~~il~~l~~~~~~~~el~~~~~~l~  134 (522)
                      +...|.+....+.          +.+++..++.+++..|++..       ++++.+++..++   ++++++++.++++|+
T Consensus         8 c~~lG~~~~~~g~----------y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~---g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           8 SFELGKVAYTEAD----------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC----------HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc---CChHHHHHHHHHHHH
Confidence            4556777777777          89999999999998877754       455667777777   899999999999999


Q ss_pred             hcCCCcchhhHHHHHHHh
Q psy13451        135 LDERNFHCWDYRRYVTDR  152 (522)
Q Consensus       135 ~d~kn~~aW~~R~~~l~~  152 (522)
                      ++|++..|+.+.+++-+.
T Consensus        75 l~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          75 LDPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             HCTTCHHHHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHH
Confidence            999999999988776543

>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase alpha-subunit, insert domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: Rab geranylgeranyltransferase alpha-subunit, insert domain
family: Rab geranylgeranyltransferase alpha-subunit, insert domain
domain: Rab geranylgeranyltransferase alpha-subunit, insert domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.00015  Score=53.56  Aligned_cols=55  Identities=22%  Similarity=0.278  Sum_probs=46.5

Q ss_pred             cceeccc--CCCceEEEEecccccccc---cceEeeCCccc-eeee-ecCCCCCcceeeeecc
Q psy13451        239 QIISAGV--LPSGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWT-SLNGASRSFIWVRFLL  294 (522)
Q Consensus       239 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~w~-~~~~~~~~~~w~~~L~  294 (522)
                      .+.|+++  +++. ..++|++|+...+   .+.+.+|+.|+ ++|+ ..|..+++.+|+++||
T Consensus         3 ~I~CvhVsR~e~~-l~v~FSrpv~v~~~~~~L~L~~Dg~p~~veWRtp~gr~r~s~vwlcdlP   64 (109)
T d1dcea2           3 VLCCVHVSREEAC-LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP   64 (109)
T ss_dssp             CEEEEEEETTTTE-EEEEEEEEECTTBTTBCEEEEESSSEECCCCBCTTSSCCSEEEEEEECC
T ss_pred             ceEEEEEecccCe-EEEEeccceecccccceEEEEeCCCcEEEEEeCCCCccCcCcEEEEeCC
Confidence            3556666  4556 7889999988876   48889999999 9999 9999999999999998

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=5.6e-05  Score=64.30  Aligned_cols=17  Identities=18%  Similarity=0.217  Sum_probs=11.2

Q ss_pred             CCCCCCCCEEEccCCCC
Q psy13451        469 FPHLPSLESLDVSHNAI  485 (522)
Q Consensus       469 l~~~~~L~~L~Ls~N~l  485 (522)
                      +...++|+.|+++.+..
T Consensus       127 L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         127 IEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHCSSCCEEECCCCCH
T ss_pred             HHhCCCccEeeCcCCCc
Confidence            34456788888876643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.16  E-value=8.5e-05  Score=68.16  Aligned_cols=128  Identities=10%  Similarity=-0.049  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      +++++..++.+++.+|++..+|...+.++...   ++|++++..++++++.+|.+..+|...+.++...+. ..+.+...
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~---G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a~~~~   87 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLCID---GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDFAQGA   87 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHHTTSC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHHHHHh
Confidence            79999999999999999999999999999999   999999999999999999999999888777754332 11111111


Q ss_pred             HH-HHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451        165 TE-KIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQR  228 (522)
Q Consensus       165 ~~-~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~  228 (522)
                      .. .+..+|.+..++..+..+....            +.++++.+.+.++....|.....|+-..
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~------------gd~~~A~~~~~~a~e~~p~~~~~~~~~~  140 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVS------------QDYEQVSELALQIEELRQEKGFLANDTS  140 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             hhhhcccCchHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhcCCCCCccccccC
Confidence            11 1112444444445554444444            7789999999999999999998886543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.15  E-value=0.00016  Score=66.25  Aligned_cols=134  Identities=10%  Similarity=-0.088  Sum_probs=101.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL  113 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il  113 (522)
                      ..++|.+ ++|+..+.++++.+|++..++.....++...|.          +++++..++.+++.+|++..+|...+.++
T Consensus         6 aL~~G~l-~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~----------~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           6 ALSEGQL-QQALELLIEAIKASPKDASLRSSFIELLCIDGD----------FERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HTTTTCH-HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3455665 889999999999999999999999999999998          89999999999999999999999888887


Q ss_pred             HHhcCCCChHHHHHHHHHH-HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451        114 DHISRAPNYEKELELCNYY-LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS  182 (522)
Q Consensus       114 ~~l~~~~~~~~el~~~~~~-l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~  182 (522)
                      ...   ....+.+.-..+. +..+|.+..++..+..+....+. .+++.+.+.++.+..|..-..|+.+.
T Consensus        75 ~a~---~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd-~~~A~~~~~~a~e~~p~~~~~~~~~~  140 (264)
T d1zbpa1          75 KAA---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-YEQVSELALQIEELRQEKGFLANDTS  140 (264)
T ss_dssp             HHH---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             Hhc---cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCccccccC
Confidence            655   2222222222111 11234444444555555666666 68999999999999999988887644

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00095  Score=61.65  Aligned_cols=141  Identities=9%  Similarity=-0.026  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC------CCccchhhHHHHHHH
Q psy13451         42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP------KSYGTWFQRCYVLDH  115 (522)
Q Consensus        42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------k~y~~W~~R~~il~~  115 (522)
                      ++|.+++.++              +.++...+.          +++++..+.+++..++      ....+|...+.+..+
T Consensus        34 ~~Aa~~y~~a--------------a~~y~~~~~----------~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~   89 (290)
T d1qqea_          34 EEAADLCVQA--------------ATIYRLRKE----------LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS   89 (290)
T ss_dssp             HHHHHHHHHH--------------HHHHHHTTC----------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------------HHHHHHCcC----------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            7788887776              445666665          6888888888888643      334688999999999


Q ss_pred             hcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCc------chHhhHHH
Q psy13451        116 ISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDR-HKVAPLKELNYSTEKIEANFSN------YSAWHYRS  182 (522)
Q Consensus       116 l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~-~~~~~~~el~~~~~~i~~~~~n------~saW~~r~  182 (522)
                      .   ++++++++++++++++.+++      ..++..-+-++.. ++. ++++++++.++++..+.+      ..++...+
T Consensus        90 ~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la  165 (290)
T d1qqea_          90 G---GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCA  165 (290)
T ss_dssp             T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h---CCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence            8   89999999999999987766      3344444444433 455 799999999998874432      33466677


Q ss_pred             HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc
Q psy13451        183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS  222 (522)
Q Consensus       183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s  222 (522)
                      .+....            +.++++++.+.+++...|.+..
T Consensus       166 ~~~~~~------------g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         166 DLKALD------------GQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHT------------TCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHc------------ChHHHHHHHHHHHHHhCccchh
Confidence            777766            7899999999999999998864

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.002  Score=54.83  Aligned_cols=118  Identities=8%  Similarity=-0.036  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451         85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS  164 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~  164 (522)
                      ++++...+..+|...|..+..+..-          ..|-.+     ......+....+|..+.-+....+. +++++.++
T Consensus        27 ~e~A~~~~~~AL~l~rG~~l~~~~~----------~~w~~~-----~r~~l~~~~~~a~~~la~~~~~~g~-~~~Al~~~   90 (179)
T d2ff4a2          27 FEQASRHLSAALREWRGPVLDDLRD----------FQFVEP-----FATALVEDKVLAHTAKAEAEIACGR-ASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTT----------STTHHH-----HHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccccccCcc----------hHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHH
Confidence            4566777777777766665443211          111110     1112223334577788888888888 79999999


Q ss_pred             HHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHH-------HhcCCCCcchhhHHHHH
Q psy13451        165 TEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA-------VFTEPKDQSAWFYQRWL  230 (522)
Q Consensus       165 ~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~a-------i~~~p~~~s~W~y~~~l  230 (522)
                      +++++.||.+-.+|...+.++..+            ++..+++..|.++       +.++|..+..=.|.+.+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~------------Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il  151 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLS------------DRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  151 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence            999999999999999999999988            7888888888877       77889876655555544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.012  Score=54.26  Aligned_cols=161  Identities=14%  Similarity=-0.044  Sum_probs=114.7

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------
Q psy13451         34 KRKNQEYDDEALSLTSEVLRNIPDIN-----SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------  102 (522)
Q Consensus        34 ~~~~~~~~~eal~~~~~~l~~np~~~-----t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------  102 (522)
                      ....|++ ++|+..+.++|..+|++.     .++...+.+....+.          +++++..++.++...|+.      
T Consensus        22 ~~~~g~~-~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          22 AINDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE----------LTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhhcchHHH
Confidence            4566776 899999999999999874     477788888888888          789999999998866544      


Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc--------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF--------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN  174 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~--------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n  174 (522)
                      ..++..++++....   +++...+..+.+++...++..        .+...++.+....+. ++....++.+.+...+..
T Consensus        91 ~~~~~~~~~~~~~~---~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_          91 LWSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHhhhh
Confidence            34555666666666   889999999999988654432        234456667777776 688889999999877665


Q ss_pred             chHhhH-----HHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451        175 YSAWHY-----RSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ  221 (522)
Q Consensus       175 ~saW~~-----r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~  221 (522)
                      ...+..     .+......            +.+.++...+.++....+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~------------~~~~~a~~~~~~a~~~~~~~~  206 (366)
T d1hz4a_         167 QPQQQLQCLAMLIQCSLAR------------GDLDNARSQLNRLENLLGNGK  206 (366)
T ss_dssp             CGGGGHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHhc
Confidence            543332     22222222            456777777777776655444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.79  E-value=0.00021  Score=60.45  Aligned_cols=61  Identities=11%  Similarity=0.072  Sum_probs=36.7

Q ss_pred             CcccEEEcCCCCCCCCC------CCCCCCCCCEEEc--cCCCCCCCC----hhhhcCCCCccEEEecCCCCcc
Q psy13451        451 VYFQSLKLTHCSLSSLH------VFPHLPSLESLDV--SHNAIDHIE----DSVFAKYEACVQVILTGNPVSA  511 (522)
Q Consensus       451 ~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~L--s~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~  511 (522)
                      .+++.+++++|.++.-+      .+...++|+.++|  ++|.+.+..    ...+...+.|+.|+++.+...+
T Consensus        74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            44555555555554322      1555677876555  466676532    3445677888888888776543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.021  Score=52.39  Aligned_cols=141  Identities=11%  Similarity=-0.017  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc-----cchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451         58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-----GTWFQRCYVLDHISRAPNYEKELELCNYY  132 (522)
Q Consensus        58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-----~~W~~R~~il~~l~~~~~~~~el~~~~~~  132 (522)
                      +..+-..|..+....|.          +++++.+++.+|...|.+.     .++...+.+....   +++++++..+.++
T Consensus        11 ~ae~~~lrA~~~~~~g~----------~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~---g~~~~A~~~~~~a   77 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGN----------PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK---GELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
Confidence            34455668888888777          7999999999999999985     4777888888888   9999999999999


Q ss_pred             HhhcCCCc------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc------h--HhhHHHHHhchhCCCCCCCCcc
Q psy13451        133 LELDERNF------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY------S--AWHYRSKLLPLLYPDPNNHLPI  198 (522)
Q Consensus       133 l~~d~kn~------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~------s--aW~~r~~ll~~l~~~~~~~~~~  198 (522)
                      ++..++.-      .++...+++....+. +....+.+.+++...+...      .  +...++.+....          
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------  146 (366)
T d1hz4a_          78 EQMARQHDVWHYALWSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW----------  146 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT----------
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh----------
Confidence            99776542      345556667777776 6788888888876433221      2  333445555554          


Q ss_pred             chhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451        199 EQDKYVNEFSMVESAVFTEPKDQSAW  224 (522)
Q Consensus       199 ~~~~~~~el~~~~~ai~~~p~~~s~W  224 (522)
                        +.++.+...+..++...+.....+
T Consensus       147 --~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_         147 --ARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             --TCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             --cchhhhHHHHHHHHHHhhhhhhhh
Confidence              678899999999998887765543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0051  Score=48.21  Aligned_cols=85  Identities=11%  Similarity=0.019  Sum_probs=71.0

Q ss_pred             ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc-chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451        103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF-HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYR  181 (522)
Q Consensus       103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~-~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r  181 (522)
                      .++.+.=.|+|.+-....++++.+.+++.+++.+|.+. .+|+|-+...-+++. +++++.+++++++++|.|-.|..-+
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd-y~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHccCCCcHHHHHHH
Confidence            56888889999875333567899999999999998764 799999999999998 7999999999999999999998887


Q ss_pred             HHHhchh
Q psy13451        182 SKLLPLL  188 (522)
Q Consensus       182 ~~ll~~l  188 (522)
                      ..+-.++
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7655444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.01  Score=46.48  Aligned_cols=66  Identities=11%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhCCCC-ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451         85 VDRELKLTKDCLLAQPKS-YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH  153 (522)
Q Consensus        85 ~~~eL~~~~~~l~~~pk~-y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~  153 (522)
                      +++.+.+++.+++.+|.. ...|++-+-...++   +++++++.+++++|+++|.|-+|..-+.-|-+.+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl---gdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKL---GEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence            688999999999999976 47999999999999   9999999999999999999999998877665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.64  E-value=0.00073  Score=56.92  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=11.7

Q ss_pred             CCCCCCCCEEEccCCCC
Q psy13451        469 FPHLPSLESLDVSHNAI  485 (522)
Q Consensus       469 l~~~~~L~~L~Ls~N~l  485 (522)
                      +...++|+.|+++.+..
T Consensus       128 L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         128 LEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHCSSCCEEECCCSSH
T ss_pred             HHhCCCcCEEeCcCCCC
Confidence            44567888888876653