Psyllid ID: psy13460


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
YAQKDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN
ccccccccccccccEEcccccccccEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccEEEEEccccEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEccccccccccHccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
yaqkddfqcpddfgfyphhiscdkywkcdgreaelktcgnglafddtdpkylkencdylhnvdcgsrsqleppvstpkcprlygifpdevkcdvfwncwngessryqcspglaydrearvcmwadqvpeckieevangfncpaageiaaggsfsrhahpddcrKYYICLEgtareygcpigtvfkigdgegtgncedpeevpgedyygdldlksirksellaglpggngassnprskqpapqqeaapsqplksaksrpqapspnrpqqnipqrllpqeeqn
yaqkddfqcpddfgfypHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSrpqapspnrpqqnipqrllpqeeqn
YAQKDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKqpapqqeaapsqpLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN
*******QCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGS*********TPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGE***************YYGDL***********************************************************************
***KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDL*********************************************************************
YAQKDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSR********TPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLKSIRKSELLAGLPG******************************************NIPQRLLPQEEQN
*****DFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLK********************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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YAQKDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
242008782294 chitin binding peritrophin-A, putative [ 0.971 0.928 0.741 1e-113
170042421263 conserved hypothetical protein [Culex qu 0.857 0.916 0.810 1e-113
121583754274 cuticular protein analogous to peritroph 0.879 0.901 0.777 1e-113
389610567262 chitin binding peritrophin-A, putative [ 0.857 0.919 0.802 1e-113
270002194 621 hypothetical protein TcasGA2_TC001169 [T 0.879 0.397 0.777 1e-112
389608097262 chitin binding peritrophin-A [Papilio xu 0.857 0.919 0.802 1e-112
312381774266 hypothetical protein AND_05857 [Anophele 0.857 0.906 0.797 1e-112
157137284264 hypothetical protein AaeL_AAEL013766 [Ae 0.854 0.909 0.792 1e-112
289743291255 hypothetical conserved protein [Glossina 0.793 0.874 0.861 1e-111
347969647252 AGAP003308-PB [Anopheles gambiae str. PE 0.811 0.904 0.838 1e-111
>gi|242008782|ref|XP_002425178.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis] gi|212508886|gb|EEB12440.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/279 (74%), Positives = 226/279 (81%), Gaps = 6/279 (2%)

Query: 4   KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVD 63
           ++ F+CPDD+GFYPH ISCDKYWKCD    ELKTCGNGLAFD +D KYL ENCDYLHNVD
Sbjct: 21  QESFKCPDDYGFYPHSISCDKYWKCDNGLPELKTCGNGLAFDASDSKYLTENCDYLHNVD 80

Query: 64  CGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMW 123
           CG R+ LEPP+STP CPRLYGIF DE KCDVFWNCWNGE+SRYQCSPGLAYDR++RVCMW
Sbjct: 81  CGERTNLEPPISTPHCPRLYGIFSDEKKCDVFWNCWNGEASRYQCSPGLAYDRDSRVCMW 140

Query: 124 ADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTV 183
           ADQVPECK+EEVA GF CPAAGEIAAGGSFSRHAHPDDCRKYYICLEG AREYGCPIGTV
Sbjct: 141 ADQVPECKVEEVAGGFTCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGVAREYGCPIGTV 200

Query: 184 FKIGDGEGTGNCEDPEEVPG-EDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQ 242
           FKIGD EG GNCEDPE+VPG EDYYGDLDLK+IRKSELLAGL   +GA  +     PA  
Sbjct: 201 FKIGDSEGAGNCEDPEDVPGCEDYYGDLDLKTIRKSELLAGLK-SSGAGRSGNQDVPAQL 259

Query: 243 QEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN 281
           Q     +P   A+  P AP   RPQ  I ++    EEQN
Sbjct: 260 QPKPLVKPRVPAQIHP-APIQARPQGLIKEQF---EEQN 294




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042421|ref|XP_001848925.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865985|gb|EDS29368.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|121583754|ref|NP_001073569.1| cuticular protein analogous to peritrophins 3-C5 isoform 1 precursor [Tribolium castaneum] gi|119387888|gb|ABL73929.1| obstractor C1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389610567|dbj|BAM18895.1| chitin binding peritrophin-A, putative [Papilio polytes] Back     alignment and taxonomy information
>gi|270002194|gb|EEZ98641.1| hypothetical protein TcasGA2_TC001169 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389608097|dbj|BAM17660.1| chitin binding peritrophin-A [Papilio xuthus] Back     alignment and taxonomy information
>gi|312381774|gb|EFR27442.1| hypothetical protein AND_05857 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157137284|ref|XP_001663971.1| hypothetical protein AaeL_AAEL013766 [Aedes aegypti] gi|108869744|gb|EAT33969.1| AAEL013766-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|289743291|gb|ADD20393.1| hypothetical conserved protein [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|347969647|ref|XP_003436437.1| AGAP003308-PB [Anopheles gambiae str. PEST] gi|333469666|gb|EGK97370.1| AGAP003308-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
FB|FBgn0026077258 Gasp "Gasp" [Drosophila melano 0.832 0.906 0.808 1.2e-111
FB|FBgn0031097237 obst-A "obstructor-A" [Drosoph 0.718 0.852 0.372 3.5e-36
FB|FBgn0027600337 obst-B "obstructor-B" [Drosoph 0.686 0.572 0.373 1.4e-32
FB|FBgn0031737249 obst-E "obstructor-E" [Drosoph 0.594 0.670 0.364 5.7e-27
FB|FBgn0022770230 Peritrophin-A "Peritrophin A" 0.669 0.817 0.356 5.2e-26
FB|FBgn0023479 2786 Tequila "Tequila" [Drosophila 0.608 0.061 0.301 4.3e-11
FB|FBgn0036947326 obst-F "obstructor-F" [Drosoph 0.195 0.168 0.333 1.3e-08
FB|FBgn0036361316 CG10154 [Drosophila melanogast 0.590 0.525 0.262 2.4e-07
FB|FBgn0036362269 CG10725 [Drosophila melanogast 0.377 0.394 0.276 1.8e-06
FB|FBgn00362031514 Muc68D "Mucin 68D" [Drosophila 0.548 0.101 0.286 2.5e-06
FB|FBgn0026077 Gasp "Gasp" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 190/235 (80%), Positives = 205/235 (87%)

Query:     4 KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVD 63
             +  F+CPDDFGFYPH  SCDKYWKCD   +ELKTCGNGLAFD TD KYL ENCDYLHNVD
Sbjct:    18 QSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELKTCGNGLAFDATDSKYLTENCDYLHNVD 77

Query:    64 CGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMW 123
             CG R++LEPP++TP C RLYGIFPDE KCDVFWNCWNGE SRYQCSPGLAYDR+ARVCMW
Sbjct:    78 CGDRTELEPPITTPHCSRLYGIFPDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMW 137

Query:   124 ADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTV 183
             ADQVPECK EEVANGF+CPAAGE+A  GSFSRHAHP+DCRKYYICLEG AREYGCPIGTV
Sbjct:   138 ADQVPECKNEEVANGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTV 197

Query:   184 FKIGDGEGTGNCEDPEEVPG-EDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSK 237
             FKIGD +GTGNCEDPE+VPG EDYYGDLDLKSIRKSELLAGL         P++K
Sbjct:   198 FKIGDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPKTK 252




GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS
GO:0008061 "chitin binding" evidence=IEA;RCA;NAS
GO:0005576 "extracellular region" evidence=IEA
GO:0006030 "chitin metabolic process" evidence=IEA
FB|FBgn0031097 obst-A "obstructor-A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0027600 obst-B "obstructor-B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0031737 obst-E "obstructor-E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0022770 Peritrophin-A "Peritrophin A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0023479 Tequila "Tequila" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036947 obst-F "obstructor-F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036361 CG10154 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036362 CG10725 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
pfam0160753 pfam01607, CBM_14, Chitin binding Peritrophin-A do 4e-09
smart0049449 smart00494, ChtBD2, Chitin-binding domain type 2 6e-08
pfam0160753 pfam01607, CBM_14, Chitin binding Peritrophin-A do 5e-06
smart0049449 smart00494, ChtBD2, Chitin-binding domain type 2 1e-05
smart0049449 smart00494, ChtBD2, Chitin-binding domain type 2 3e-05
pfam0160753 pfam01607, CBM_14, Chitin binding Peritrophin-A do 1e-04
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain Back     alignment and domain information
 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 81  RLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPEC 130
           R  G++PD   C  ++ C NG++  + C  GL +D     C + D V +C
Sbjct: 4   RPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVDC 53


This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains. Length = 53

>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 Back     alignment and domain information
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain Back     alignment and domain information
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 Back     alignment and domain information
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 Back     alignment and domain information
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PF0160753 CBM_14: Chitin binding Peritrophin-A domain; Inter 99.1
PF0160753 CBM_14: Chitin binding Peritrophin-A domain; Inter 99.1
smart0049456 ChtBD2 Chitin-binding domain type 2. 98.99
smart0049456 ChtBD2 Chitin-binding domain type 2. 98.87
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] Back     alignment and domain information
Probab=99.10  E-value=5.8e-11  Score=80.73  Aligned_cols=51  Identities=41%  Similarity=0.901  Sum_probs=36.9

Q ss_pred             CCCC-CcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCcccccccccccc-ccC
Q psy13460          9 CPDD-FGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHN-VDC   64 (281)
Q Consensus         9 C~~~-~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~-v~C   64 (281)
                      |+.. +|+++++.+|++||+|.+|.++.+.||.|++||..     ++.|+++.. +.|
T Consensus         1 C~~~~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~-----~~~C~~~~~~~~C   53 (53)
T PF01607_consen    1 CPGRGDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPS-----SQRCVPPSNVVQC   53 (53)
T ss_dssp             ----SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TT-----TSSEE-TTT-TT-
T ss_pred             CCccCCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcC-----cCEEcCCccCCCC
Confidence            5543 89999999999999999999999999999999999     999999887 555



It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.

>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] Back     alignment and domain information
>smart00494 ChtBD2 Chitin-binding domain type 2 Back     alignment and domain information
>smart00494 ChtBD2 Chitin-binding domain type 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 2e-09
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 3e-06
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 5e-06
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 2e-06
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 2e-05
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 2e-04
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 Back     alignment and structure
 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 6  DFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCG 65
           +    D G   +  SC  ++ C    A L+ C  GL ++        + CD+     C 
Sbjct: 8  RYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCT 62

Query: 66 SRSQ 69
          S ++
Sbjct: 63 SVNK 66


>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 Back     alignment and structure
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 99.34
1dqc_A74 Tachycitin; disulfide-rich, antimicrobial protein; 99.28
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 98.29
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 98.19
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Back     alignment and structure
Probab=99.34  E-value=6.6e-13  Score=96.65  Aligned_cols=59  Identities=25%  Similarity=0.499  Sum_probs=53.8

Q ss_pred             CCCCCCCCCCcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccccccccCCCCC
Q psy13460          4 KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS   68 (281)
Q Consensus         4 ~~~f~C~~~~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~v~C~~~~   68 (281)
                      ...+.|+. +|+|+||.+|++||+|++|.++.+.||.|++||+.     ++.|+++.+|.|....
T Consensus         7 ~~~~~C~~-~G~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~-----~~~Cd~p~~v~C~~~~   65 (74)
T 1dqc_A            7 GRYSPCLD-DGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN   65 (74)
T ss_dssp             GGGCCSSS-SEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT-----TTEEECTTTTTCCSSC
T ss_pred             CCCCcCCC-CCEeCCcccCcceeECCCCcEEEeECcCCCEEChh-----hCcCcCcccCCCCCCC
Confidence            34678976 89999999999999999999999999999999999     9999999999998653



>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1dqca_73 g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple 1e-08
d1dqca_73 g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple 6e-06
d1dqca_73 g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple 9e-06
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 Back     information, alignment and structure

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 9  CPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS 68
          C DD G   +  SC  ++ C    A L+ C  GL ++        + CD+     C S +
Sbjct: 12 CLDD-GPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN 65

Query: 69 Q 69
          +
Sbjct: 66 K 66


>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 Back     information, alignment and structure
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1dqca_73 Tachycitin {Horseshoe crab (Tachypleus tridentatus 99.29
d1dqca_73 Tachycitin {Horseshoe crab (Tachypleus tridentatus 99.27
d1hx2a_60 BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 81.66
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Back     information, alignment and structure
class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=99.29  E-value=1.6e-12  Score=92.68  Aligned_cols=52  Identities=27%  Similarity=0.553  Sum_probs=49.3

Q ss_pred             CCcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccccccccCCCCC
Q psy13460         12 DFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS   68 (281)
Q Consensus        12 ~~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~v~C~~~~   68 (281)
                      .+|+++||.||++||+|.+|.++.+.||.||+||+.     ++.|+++++|.|....
T Consensus        14 ~dG~~~~p~dC~~yy~C~~g~~~~~~Cp~Gl~Fn~~-----~~~Cd~p~~v~C~~~~   65 (73)
T d1dqca_          14 DDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN   65 (73)
T ss_dssp             SSEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT-----TTEEECTTTTTCCSSC
T ss_pred             CCCccCCcccccEEEEeECCEEEEEECCCCCEECCC-----cCEECccccCCCCCCC
Confidence            479999999999999999999999999999999999     9999999999999764



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Back     information, alignment and structure
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]} Back     information, alignment and structure