Psyllid ID: psy13460
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| 242008782 | 294 | chitin binding peritrophin-A, putative [ | 0.971 | 0.928 | 0.741 | 1e-113 | |
| 170042421 | 263 | conserved hypothetical protein [Culex qu | 0.857 | 0.916 | 0.810 | 1e-113 | |
| 121583754 | 274 | cuticular protein analogous to peritroph | 0.879 | 0.901 | 0.777 | 1e-113 | |
| 389610567 | 262 | chitin binding peritrophin-A, putative [ | 0.857 | 0.919 | 0.802 | 1e-113 | |
| 270002194 | 621 | hypothetical protein TcasGA2_TC001169 [T | 0.879 | 0.397 | 0.777 | 1e-112 | |
| 389608097 | 262 | chitin binding peritrophin-A [Papilio xu | 0.857 | 0.919 | 0.802 | 1e-112 | |
| 312381774 | 266 | hypothetical protein AND_05857 [Anophele | 0.857 | 0.906 | 0.797 | 1e-112 | |
| 157137284 | 264 | hypothetical protein AaeL_AAEL013766 [Ae | 0.854 | 0.909 | 0.792 | 1e-112 | |
| 289743291 | 255 | hypothetical conserved protein [Glossina | 0.793 | 0.874 | 0.861 | 1e-111 | |
| 347969647 | 252 | AGAP003308-PB [Anopheles gambiae str. PE | 0.811 | 0.904 | 0.838 | 1e-111 |
| >gi|242008782|ref|XP_002425178.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis] gi|212508886|gb|EEB12440.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/279 (74%), Positives = 226/279 (81%), Gaps = 6/279 (2%)
Query: 4 KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVD 63
++ F+CPDD+GFYPH ISCDKYWKCD ELKTCGNGLAFD +D KYL ENCDYLHNVD
Sbjct: 21 QESFKCPDDYGFYPHSISCDKYWKCDNGLPELKTCGNGLAFDASDSKYLTENCDYLHNVD 80
Query: 64 CGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMW 123
CG R+ LEPP+STP CPRLYGIF DE KCDVFWNCWNGE+SRYQCSPGLAYDR++RVCMW
Sbjct: 81 CGERTNLEPPISTPHCPRLYGIFSDEKKCDVFWNCWNGEASRYQCSPGLAYDRDSRVCMW 140
Query: 124 ADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTV 183
ADQVPECK+EEVA GF CPAAGEIAAGGSFSRHAHPDDCRKYYICLEG AREYGCPIGTV
Sbjct: 141 ADQVPECKVEEVAGGFTCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGVAREYGCPIGTV 200
Query: 184 FKIGDGEGTGNCEDPEEVPG-EDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQ 242
FKIGD EG GNCEDPE+VPG EDYYGDLDLK+IRKSELLAGL +GA + PA
Sbjct: 201 FKIGDSEGAGNCEDPEDVPGCEDYYGDLDLKTIRKSELLAGLK-SSGAGRSGNQDVPAQL 259
Query: 243 QEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN 281
Q +P A+ P AP RPQ I ++ EEQN
Sbjct: 260 QPKPLVKPRVPAQIHP-APIQARPQGLIKEQF---EEQN 294
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170042421|ref|XP_001848925.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865985|gb|EDS29368.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
| >gi|121583754|ref|NP_001073569.1| cuticular protein analogous to peritrophins 3-C5 isoform 1 precursor [Tribolium castaneum] gi|119387888|gb|ABL73929.1| obstractor C1 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|389610567|dbj|BAM18895.1| chitin binding peritrophin-A, putative [Papilio polytes] | Back alignment and taxonomy information |
|---|
| >gi|270002194|gb|EEZ98641.1| hypothetical protein TcasGA2_TC001169 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|389608097|dbj|BAM17660.1| chitin binding peritrophin-A [Papilio xuthus] | Back alignment and taxonomy information |
|---|
| >gi|312381774|gb|EFR27442.1| hypothetical protein AND_05857 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
| >gi|157137284|ref|XP_001663971.1| hypothetical protein AaeL_AAEL013766 [Aedes aegypti] gi|108869744|gb|EAT33969.1| AAEL013766-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
| >gi|289743291|gb|ADD20393.1| hypothetical conserved protein [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
| >gi|347969647|ref|XP_003436437.1| AGAP003308-PB [Anopheles gambiae str. PEST] gi|333469666|gb|EGK97370.1| AGAP003308-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| FB|FBgn0026077 | 258 | Gasp "Gasp" [Drosophila melano | 0.832 | 0.906 | 0.808 | 1.2e-111 | |
| FB|FBgn0031097 | 237 | obst-A "obstructor-A" [Drosoph | 0.718 | 0.852 | 0.372 | 3.5e-36 | |
| FB|FBgn0027600 | 337 | obst-B "obstructor-B" [Drosoph | 0.686 | 0.572 | 0.373 | 1.4e-32 | |
| FB|FBgn0031737 | 249 | obst-E "obstructor-E" [Drosoph | 0.594 | 0.670 | 0.364 | 5.7e-27 | |
| FB|FBgn0022770 | 230 | Peritrophin-A "Peritrophin A" | 0.669 | 0.817 | 0.356 | 5.2e-26 | |
| FB|FBgn0023479 | 2786 | Tequila "Tequila" [Drosophila | 0.608 | 0.061 | 0.301 | 4.3e-11 | |
| FB|FBgn0036947 | 326 | obst-F "obstructor-F" [Drosoph | 0.195 | 0.168 | 0.333 | 1.3e-08 | |
| FB|FBgn0036361 | 316 | CG10154 [Drosophila melanogast | 0.590 | 0.525 | 0.262 | 2.4e-07 | |
| FB|FBgn0036362 | 269 | CG10725 [Drosophila melanogast | 0.377 | 0.394 | 0.276 | 1.8e-06 | |
| FB|FBgn0036203 | 1514 | Muc68D "Mucin 68D" [Drosophila | 0.548 | 0.101 | 0.286 | 2.5e-06 |
| FB|FBgn0026077 Gasp "Gasp" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 190/235 (80%), Positives = 205/235 (87%)
Query: 4 KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVD 63
+ F+CPDDFGFYPH SCDKYWKCD +ELKTCGNGLAFD TD KYL ENCDYLHNVD
Sbjct: 18 QSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELKTCGNGLAFDATDSKYLTENCDYLHNVD 77
Query: 64 CGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMW 123
CG R++LEPP++TP C RLYGIFPDE KCDVFWNCWNGE SRYQCSPGLAYDR+ARVCMW
Sbjct: 78 CGDRTELEPPITTPHCSRLYGIFPDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMW 137
Query: 124 ADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTV 183
ADQVPECK EEVANGF+CPAAGE+A GSFSRHAHP+DCRKYYICLEG AREYGCPIGTV
Sbjct: 138 ADQVPECKNEEVANGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTV 197
Query: 184 FKIGDGEGTGNCEDPEEVPG-EDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSK 237
FKIGD +GTGNCEDPE+VPG EDYYGDLDLKSIRKSELLAGL P++K
Sbjct: 198 FKIGDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPKTK 252
|
|
| FB|FBgn0031097 obst-A "obstructor-A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0027600 obst-B "obstructor-B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0031737 obst-E "obstructor-E" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0022770 Peritrophin-A "Peritrophin A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0023479 Tequila "Tequila" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0036947 obst-F "obstructor-F" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0036361 CG10154 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0036362 CG10725 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 4e-09 | |
| smart00494 | 49 | smart00494, ChtBD2, Chitin-binding domain type 2 | 6e-08 | |
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 5e-06 | |
| smart00494 | 49 | smart00494, ChtBD2, Chitin-binding domain type 2 | 1e-05 | |
| smart00494 | 49 | smart00494, ChtBD2, Chitin-binding domain type 2 | 3e-05 | |
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 1e-04 |
| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-09
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 81 RLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPEC 130
R G++PD C ++ C NG++ + C GL +D C + D V +C
Sbjct: 4 RPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVDC 53
|
This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains. Length = 53 |
| >gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
|---|
| >gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| PF01607 | 53 | CBM_14: Chitin binding Peritrophin-A domain; Inter | 99.1 | |
| PF01607 | 53 | CBM_14: Chitin binding Peritrophin-A domain; Inter | 99.1 | |
| smart00494 | 56 | ChtBD2 Chitin-binding domain type 2. | 98.99 | |
| smart00494 | 56 | ChtBD2 Chitin-binding domain type 2. | 98.87 |
| >PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-11 Score=80.73 Aligned_cols=51 Identities=41% Similarity=0.901 Sum_probs=36.9
Q ss_pred CCCC-CcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCcccccccccccc-ccC
Q psy13460 9 CPDD-FGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHN-VDC 64 (281)
Q Consensus 9 C~~~-~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~-v~C 64 (281)
|+.. +|+++++.+|++||+|.+|.++.+.||.|++||.. ++.|+++.. +.|
T Consensus 1 C~~~~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~-----~~~C~~~~~~~~C 53 (53)
T PF01607_consen 1 CPGRGDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPS-----SQRCVPPSNVVQC 53 (53)
T ss_dssp ----SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TT-----TSSEE-TTT-TT-
T ss_pred CCccCCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcC-----cCEEcCCccCCCC
Confidence 5543 89999999999999999999999999999999999 999999887 555
|
It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A. |
| >PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] | Back alignment and domain information |
|---|
| >smart00494 ChtBD2 Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >smart00494 ChtBD2 Chitin-binding domain type 2 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 2e-09 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 3e-06 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 5e-06 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 2e-06 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 2e-05 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 2e-04 |
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-09
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 6 DFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCG 65
+ D G + SC ++ C A L+ C GL ++ + CD+ C
Sbjct: 8 RYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCT 62
Query: 66 SRSQ 69
S ++
Sbjct: 63 SVNK 66
|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 | Back alignment and structure |
|---|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 99.34 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 99.28 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 98.29 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 98.19 |
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-13 Score=96.65 Aligned_cols=59 Identities=25% Similarity=0.499 Sum_probs=53.8
Q ss_pred CCCCCCCCCCcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccccccccCCCCC
Q psy13460 4 KDDFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS 68 (281)
Q Consensus 4 ~~~f~C~~~~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~v~C~~~~ 68 (281)
...+.|+. +|+|+||.+|++||+|++|.++.+.||.|++||+. ++.|+++.+|.|....
T Consensus 7 ~~~~~C~~-~G~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~-----~~~Cd~p~~v~C~~~~ 65 (74)
T 1dqc_A 7 GRYSPCLD-DGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN 65 (74)
T ss_dssp GGGCCSSS-SEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT-----TTEEECTTTTTCCSSC
T ss_pred CCCCcCCC-CCEeCCcccCcceeECCCCcEEEeECcCCCEEChh-----hCcCcCcccCCCCCCC
Confidence 34678976 89999999999999999999999999999999999 9999999999998653
|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 281 | ||||
| d1dqca_ | 73 | g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple | 1e-08 | |
| d1dqca_ | 73 | g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple | 6e-06 | |
| d1dqca_ | 73 | g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple | 9e-06 |
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 | Back information, alignment and structure |
|---|
class: Small proteins fold: Invertebrate chitin-binding proteins superfamily: Invertebrate chitin-binding proteins family: Tachycitin domain: Tachycitin species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Score = 48.8 bits (116), Expect = 1e-08
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 9 CPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS 68
C DD G + SC ++ C A L+ C GL ++ + CD+ C S +
Sbjct: 12 CLDD-GPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN 65
Query: 69 Q 69
+
Sbjct: 66 K 66
|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 | Back information, alignment and structure |
|---|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| d1dqca_ | 73 | Tachycitin {Horseshoe crab (Tachypleus tridentatus | 99.29 | |
| d1dqca_ | 73 | Tachycitin {Horseshoe crab (Tachypleus tridentatus | 99.27 | |
| d1hx2a_ | 60 | BSTI {Fire-bellied toad (Bombina bombina) [TaxId: | 81.66 |
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Invertebrate chitin-binding proteins superfamily: Invertebrate chitin-binding proteins family: Tachycitin domain: Tachycitin species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=99.29 E-value=1.6e-12 Score=92.68 Aligned_cols=52 Identities=27% Similarity=0.553 Sum_probs=49.3
Q ss_pred CCcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccccccccCCCCC
Q psy13460 12 DFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS 68 (281)
Q Consensus 12 ~~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~v~C~~~~ 68 (281)
.+|+++||.||++||+|.+|.++.+.||.||+||+. ++.|+++++|.|....
T Consensus 14 ~dG~~~~p~dC~~yy~C~~g~~~~~~Cp~Gl~Fn~~-----~~~Cd~p~~v~C~~~~ 65 (73)
T d1dqca_ 14 DDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN 65 (73)
T ss_dssp SSEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT-----TTEEECTTTTTCCSSC
T ss_pred CCCccCCcccccEEEEeECCEEEEEECCCCCEECCC-----cCEECccccCCCCCCC
Confidence 479999999999999999999999999999999999 9999999999999764
|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
| >d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]} | Back information, alignment and structure |
|---|