Psyllid ID: psy13464

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----

CSILSQSSLALSYATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAGRTGPRCPNPSGTSSQPATF

cccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccEEEEEEcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccc

ccEEcccccccccccccccccccccccccccEEEEEcccccccEEEEcccccEEEEEccccEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEcccccEEEcccHHHHHHHHHHHHcccEcccccccccccHHHHHHHccccccccccccccccccEEEHHHHcHHHHccHHHHcccccHHccccccccccHHHHHcccccEEEEccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccEEEEccccHHHccccccccccccccccccHcHHHHHHccccccccccccccccccccEEEEEHHHHHHHcccccEccccccccccccccHHHHHHHHcccccEEEEEEcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc

CSILSQSSLALSYAtscespkwslpsgydtgikiynpitktkvpFIIQnknhlkwyacgptvydsphighaVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKvvgsiptrghavCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKakvdsgpvltkcdEFRDELLALGVQIkdqkceatwqfkdgkvfsdrvfISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESmekfgvlpptratrvsefIPHIQSFIQTLLDTkqayigsdhsvyfdvdsfphyfklwgrnenitqhavkrspfdfalwksakpgepwyesawgkgrpgwhieCSAMAshffggqvdlhtggidlkfphheneeaqscafhnqSQWVNYWLHtghlrgtdgTRRLRAARFITNlsgstigytrdtcagrtgprcpnpsgtssqpatf

CSILSQSSLALSYATscespkwslpsgydTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSivissvtdidDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKvvgsiptrghAVCNVKLDIIRRILEHYFHIHSIvissvtdidDKIINKanslkedykTVAKRYFLRLIFKILHQKVVRKLAIdlkkakvdsgpvltkcDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFitnlsgstigytrdtcagrtgprcpnpsgtssqpatf

************YATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA********************

*******************************IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKED**TVA**YFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK******************DFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAGR******************

*********************WSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAGRTGP***************

*******************PKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNEN*****V*RSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAGRTGPRCPN***********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		515	2.2.26 [Sep-21-2011]
Q7KN90		741	Cysteine--tRNA ligase, cy	yes	N/A	0.704	0.489	0.354	5e-69
Q5M7N8		747	Cysteine--tRNA ligase, cy	yes	N/A	0.706	0.487	0.334	9e-63
Q291L4		741	Cysteine--tRNA ligase, cy	yes	N/A	0.607	0.422	0.389	4e-55
Q09860		754	Probable cysteine--tRNA l	yes	N/A	0.642	0.438	0.366	2e-50
P53852		767	Cysteine--tRNA ligase OS=	yes	N/A	0.629	0.422	0.360	1e-48
Q5F408		748	Cysteine--tRNA ligase, cy	yes	N/A	0.580	0.399	0.352	1e-46
Q7ZWR2		747	Cysteine--tRNA ligase, cy	N/A	N/A	0.586	0.404	0.358	2e-45
Q54KR1		660	Cysteine--tRNA ligase, cy	yes	N/A	0.345	0.269	0.469	1e-44
A1RYM3		474	Cysteine--tRNA ligase OS=	yes	N/A	0.333	0.362	0.483	2e-44
B3E1P0		487	Cysteine--tRNA ligase OS=	yes	N/A	0.310	0.328	0.520	3e-43

>sp\|Q7KN90\|SYCC_DROME Cysteine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-cys PE=1 SV=1	Back alignment and function desciption

 Score =  262 bits (670), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 237/468 (50%), Gaps = 105/468 (22%)

Query: 20  PKWSLPSGYDT-GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
           P W  P   D   +K++N +T+ K  F+  + N++ WY+CGPTVYD+ H+GHA   +  D
Sbjct: 7   PAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFD 66

Query: 79  IIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYKTVAKRYFLPLIFKILHQKV 136
           I+RRIL  YF  +   + ++TDIDDKII +A  N L ++Y   A++  LPL   +  QK 
Sbjct: 67  ILRRILSDYFGYNIHYVMNITDIDDKIIRRARQNHLFDEYAAEAQK--LPLDELLGQQK- 123

Query: 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAK 196
              +  R    C    D  ++I+                  DK + + N         A 
Sbjct: 124 --EVLQRFQDTCAKNTDPDKKIML-----------------DKTLQRMND--------AV 156

Query: 197 RYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATW 256
               + + K   +++  K  + L +AK    P+    D  +      G QI D       
Sbjct: 157 EALTKAVGKGDEREISEKRLLYLNEAK---DPISDWLDSLK------GAQIND------- 200

Query: 257 QFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVL 316
                    + VF +LP Y                          +E ++   M+   +L
Sbjct: 201 ---------NAVFEALPRY--------------------------WEDQFHNDMKSLNIL 225

Query: 317 PPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HYFKL----WG 367
           PP   TRVSE++P I +FIQ ++D   AY  +++SVYFDV+ F      HY KL    +G
Sbjct: 226 PPDVLTRVSEYVPQIVTFIQKIIDNGLAY-AANNSVYFDVNGFDKREKHHYAKLVPEAYG 284

Query: 368 RNENITQH-----------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMA 416
             +++ +            + KRS  DFALWK++K GEPW++S WGKGRPGWHIECSAMA
Sbjct: 285 DTKSLQEGEGDLSIAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMA 344

Query: 417 SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
           S  FG   D+HTGG+DLKFPHH+NE AQS A  N+S+WV Y+LHTGHL
Sbjct: 345 SDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHL 392

Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6

>sp\|Q5M7N8\|SYCC_XENTR Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=cars PE=2 SV=1	Back alignment and function description

>sp\|Q291L4\|SYCC_DROPS Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura pseudoobscura GN=Aats-cys PE=3 SV=1	Back alignment and function description

>sp\|Q09860\|SYC_SCHPO Probable cysteine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29E6.06c PE=3 SV=1	Back alignment and function description

>sp\|P53852\|SYC_YEAST Cysteine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL247W PE=1 SV=1	Back alignment and function description

>sp\|Q5F408\|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2 SV=1	Back alignment and function description

>sp\|Q7ZWR2\|SYCC_XENLA Cysteine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=cars PE=2 SV=1	Back alignment and function description

>sp\|Q54KR1\|SYCC_DICDI Cysteine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A1RYM3\|SYC_THEPD Cysteine--tRNA ligase OS=Thermofilum pendens (strain Hrk 5) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|B3E1P0\|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		515
195334811		741	GM21666 [Drosophila sechellia] gi\|194126	0.704	0.489	0.356	7e-68
195583830		741	GD11166 [Drosophila simulans] gi\|1941937	0.704	0.489	0.356	1e-67
195028283		743	GH21680 [Drosophila grimshawi] gi\|193903	0.708	0.491	0.346	2e-67
19922364		741	Cysteinyl-tRNA synthetase [Drosophila me	0.704	0.489	0.354	3e-67
195488337		741	GE11760 [Drosophila yakuba] gi\|194178372	0.704	0.489	0.356	4e-67
194755026		741	GF11862 [Drosophila ananassae] gi\|190621	0.704	0.489	0.358	4e-67
194882631		741	GG20575 [Drosophila erecta] gi\|190658601	0.704	0.489	0.354	2e-66
195431327		741	GK15775 [Drosophila willistoni] gi\|19415	0.704	0.489	0.352	1e-65
357627589		740	cysteinyl-tRNA synthetase [Danaus plexip	0.691	0.481	0.365	6e-65
344302158		763	hypothetical protein SPAPADRAFT_55908 [S	0.776	0.524	0.349	5e-64

>gi\|195334811\|ref\|XP_002034070.1\| GM21666 [Drosophila sechellia] gi\|194126040\|gb\|EDW48083.1\| GM21666 [Drosophila sechellia]	Back alignment and taxonomy information

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 237/468 (50%), Gaps = 105/468 (22%)

Query: 20  PKWSLPSGYDT-GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
           P W  P   D   +K++N +T+ K  F+  + N++ WY+CGPTVYD+ H+GHA   +  D
Sbjct: 7   PAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFD 66

Query: 79  IIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYKTVAKRYFLPLIFKILHQKV 136
           I+RRIL  YF  +   + ++TDIDDKII +A  N L E+Y   A++  LPL   +  QK 
Sbjct: 67  ILRRILSDYFGYNIHYVMNITDIDDKIIRRARQNHLFEEYAAEAQK--LPLDELLGQQK- 123

Query: 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAK 196
              +  R    C    D  ++I+                  DK + + N         A 
Sbjct: 124 --EVLQRFQDTCAKNTDPDKKIML-----------------DKTLQRMND--------AV 156

Query: 197 RYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATW 256
               + + K   +++  K  + L +AK    P+    D  +      G QI D       
Sbjct: 157 EALTKAVGKGDEREISEKRLLYLNEAK---DPISDWLDSLK------GAQIND------- 200

Query: 257 QFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVL 316
                    + VF +LP Y                          +E ++   M+   +L
Sbjct: 201 ---------NAVFEALPRY--------------------------WEDQFHNDMKSLNIL 225

Query: 317 PPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HYFKL----WG 367
           PP   TRVSE++P I +FIQ ++D   AY  +++SVYFDV+ F      HY KL    +G
Sbjct: 226 PPDVLTRVSEYVPQIVTFIQKIIDNGLAY-AANNSVYFDVNGFDKREKHHYAKLVPEAYG 284

Query: 368 RNENITQH-----------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMA 416
             +++ +            + KRS  DFALWK++K GEPW++S WGKGRPGWHIECSAMA
Sbjct: 285 DTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMA 344

Query: 417 SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
           S  FG   D+HTGG+DLKFPHH+NE AQS A  N+S+WV Y+LHTGHL
Sbjct: 345 SDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHL 392

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|195583830\|ref\|XP_002081719.1\| GD11166 [Drosophila simulans] gi\|194193728\|gb\|EDX07304.1\| GD11166 [Drosophila simulans]	Back alignment and taxonomy information

>gi\|195028283\|ref\|XP_001987006.1\| GH21680 [Drosophila grimshawi] gi\|193903006\|gb\|EDW01873.1\| GH21680 [Drosophila grimshawi]	Back alignment and taxonomy information

>gi|19922364|ref|NP_611087.1| Cysteinyl-tRNA synthetase [Drosophila melanogaster] gi|122087256|sp|Q7KN90.1|SYCC_DROME RecName: Full=Cysteine--tRNA ligase, cytoplasmic; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS gi|4972706|gb|AAD34748.1| unknown [Drosophila melanogaster] gi|7302987|gb|AAF58057.1| Cysteinyl-tRNA synthetase [Drosophila melanogaster] gi|220943686|gb|ACL84386.1| Aats-cys-PA [synthetic construct]

Back alignment and taxonomy information

>gi\|195488337\|ref\|XP_002092271.1\| GE11760 [Drosophila yakuba] gi\|194178372\|gb\|EDW91983.1\| GE11760 [Drosophila yakuba]	Back alignment and taxonomy information

>gi\|194755026\|ref\|XP_001959793.1\| GF11862 [Drosophila ananassae] gi\|190621091\|gb\|EDV36615.1\| GF11862 [Drosophila ananassae]	Back alignment and taxonomy information

>gi\|194882631\|ref\|XP_001975414.1\| GG20575 [Drosophila erecta] gi\|190658601\|gb\|EDV55814.1\| GG20575 [Drosophila erecta]	Back alignment and taxonomy information

>gi\|195431327\|ref\|XP_002063694.1\| GK15775 [Drosophila willistoni] gi\|194159779\|gb\|EDW74680.1\| GK15775 [Drosophila willistoni]	Back alignment and taxonomy information

>gi\|357627589\|gb\|EHJ77242.1\| cysteinyl-tRNA synthetase [Danaus plexippus]	Back alignment and taxonomy information

>gi\|344302158\|gb\|EGW32463.1\| hypothetical protein SPAPADRAFT_55908 [Spathaspora passalidarum NRRL Y-27907]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		515
FB\|FBgn0033900		558	CG8257 [Drosophila melanogaste	0.366	0.338	0.482	1.4e-70
UNIPROTKB\|Q6DJ95		572	cars2 "Probable cysteine--tRNA	0.316	0.284	0.526	1.6e-69
UNIPROTKB\|F1MLA9		555	CARS2 "Cysteine--tRNA ligase,	0.333	0.309	0.494	1.4e-68
UNIPROTKB\|Q2KIF8		555	CARS2 "Cysteine--tRNA ligase,	0.333	0.309	0.494	1.4e-68
POMBASE\|SPAC29E6.06c		754	SPAC29E6.06c "cytoplasmic cyst	0.378	0.258	0.460	1.2e-67
ZFIN\|ZDB-GENE-030131-5564		566	cars2 "cysteinyl-tRNA syntheta	0.316	0.287	0.518	1.1e-66
FB\|FBgn0027091		741	Aats-cys "Cysteinyl-tRNA synth	0.168	0.117	0.724	3.7e-66
UNIPROTKB\|D4A5T2		550	RGD1311612 "Protein RGD1311612	0.347	0.325	0.516	1.3e-65
UNIPROTKB\|Q291L4		741	Aats-cys "Cysteine--tRNA ligas	0.168	0.117	0.712	2e-65
MGI\|MGI:1919191		551	Cars2 "cysteinyl-tRNA syntheta	0.347	0.324	0.486	5.4e-65

FB\|FBgn0033900 CG8257 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 454 (164.9 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 95/197 (48%), Positives = 123/197 (62%)

Query:   302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
             YE E+ + M +  V  P   + V+  +P I  FIQ L+D KQAY+  D+SVYFDV    +
Sbjct:   139 YEAEFRQDMLRLNVQAPDVRSHVTTTMPVIIQFIQQLIDGKQAYVTPDNSVYFDVSKSKN 198

Query:   362 YFKLW--GRNENITQHAVKRSPFDFALWKSAKPG-EPWYESAWG-KGRPGWHIECSAMAS 417
             Y KL   G +E+     +KR+  DFALWK+ K G EP + + WG +GRPGWHIECSA+A 
Sbjct:   199 YGKLQNLGLSEDKLD-PIKRNTADFALWKARKSGSEPTWAAPWGGEGRPGWHIECSAIAG 257

Query:   418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAAR 477
              FFG Q+D+H GG+DL+FPHHENEEAQ CA +   QWVNYW+HTG L    G R   +  
Sbjct:   258 LFFGRQLDIHAGGLDLRFPHHENEEAQCCARYKTDQWVNYWVHTGQLHMV-GDREKMSKS 316

Query:   478 FITNLSGSTI--GYTRD 492
                 +S S +   YT D
Sbjct:   317 LGNTISVSELLKKYTAD 333

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

UNIPROTKB\|Q6DJ95 cars2 "Probable cysteine--tRNA ligase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLA9 CARS2 "Cysteine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIF8 CARS2 "Cysteine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

POMBASE\|SPAC29E6.06c SPAC29E6.06c "cytoplasmic cysteine-tRNA ligase Crs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5564 cars2 "cysteinyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0027091 Aats-cys "Cysteinyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A5T2 RGD1311612 "Protein RGD1311612" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q291L4 Aats-cys "Cysteine--tRNA ligase, cytoplasmic" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

MGI\|MGI:1919191 Cars2 "cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.16	LOW CONFIDENCE prediction!
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		515
PRK00260		463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	1e-81
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	1e-78
PTZ00399		651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	8e-74
pfam01406		301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	3e-73
TIGR00435		464	TIGR00435, cysS, cysteinyl-tRNA synthetase	7e-68
PLN02946		557	PLN02946, PLN02946, cysteine-tRNA ligase	2e-53
PRK14535		699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	2e-41
PRK12418		384	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro	1e-35
PTZ00399		651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	7e-34
TIGR03447		411	TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi	5e-33
PRK14536		490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	1e-32
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	4e-30
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	2e-29
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	5e-27
PRK00260		463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	2e-25
TIGR00435		464	TIGR00435, cysS, cysteinyl-tRNA synthetase	2e-21
pfam01406		301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	9e-19
PRK14534		481	PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi	7e-18
PLN02946		557	PLN02946, PLN02946, cysteine-tRNA ligase	1e-12
PTZ00399		651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	1e-10
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	6e-10
PRK14535		699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	7e-10
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	1e-08
PRK00260		463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	4e-08
PRK14536		490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	7e-08
pfam01406		301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	2e-07
TIGR03447		411	TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi	9e-07
PRK12418		384	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro	2e-06
TIGR00435		464	TIGR00435, cysS, cysteinyl-tRNA synthetase	1e-05
PLN02946		557	PLN02946, PLN02946, cysteine-tRNA ligase	3e-05
PRK14534		481	PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi	7e-04
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	0.001
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	0.001

>gnl\|CDD\|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

 Score =  261 bits (669), Expect = 1e-81
 Identities = 89/172 (51%), Positives = 105/172 (61%), Gaps = 9/172 (5%)

Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
           RY   + E M+   VLPP    R +E IP I   I+ L+D   AY  +D  VYFDV  FP
Sbjct: 92  RYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYE-ADGDVYFDVRKFP 150

Query: 361 HYFKLWGRN--ENITQHAV-----KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
            Y KL GRN  E      V     KR P DFALWK+AKPGEP +ES WGKGRPGWHIECS
Sbjct: 151 DYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECS 210

Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
           AM++ + G   D+H GG DL FPHHENE AQS A   +  + NYW+H G + 
Sbjct: 211 AMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGK-PFANYWMHNGFVT 261

Length = 463

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain	Back alignment and domain information

>gnl\|CDD\|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|178532 PLN02946, PLN02946, cysteine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>gnl\|CDD\|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain	Back alignment and domain information

>gnl\|CDD\|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|178532 PLN02946, PLN02946, cysteine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain	Back alignment and domain information

>gnl\|CDD\|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>gnl\|CDD\|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|178532 PLN02946, PLN02946, cysteine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		515
KOG2007\|consensus		586		100.0
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PLN02946		557	cysteine-tRNA ligase	100.0
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	100.0
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	100.0
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	100.0
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	99.97
PLN02224		616	methionine-tRNA ligase	99.97
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	99.97
PRK12268		556	methionyl-tRNA synthetase; Reviewed	99.97
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	99.96
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	99.96
PRK12267		648	methionyl-tRNA synthetase; Reviewed	99.96
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	99.96
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	99.96
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.95
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	99.93
PLN02610		801	probable methionyl-tRNA synthetase	99.92
cd00802		143	class_I_aaRS_core catalytic core domain of class I	99.9
KOG0436\|consensus		578		99.89
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	99.87
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	99.86
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	99.85
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	99.84
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	99.83
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	99.82
cd00674		353	LysRS_core_class_I catalytic core domain of class	99.74
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	99.74
PRK12451		562	arginyl-tRNA synthetase; Reviewed	99.71
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	99.7
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	99.69
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	99.69
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.69
cd09287		240	GluRS_non_core catalytic core domain of non-discri	99.69
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	99.68
PLN02843		974	isoleucyl-tRNA synthetase	99.67
PLN02943		958	aminoacyl-tRNA ligase	99.67
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	99.67
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	99.65
PLN02286		576	arginine-tRNA ligase	99.61
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	99.6
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	99.6
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.59
PLN02882		1159	aminoacyl-tRNA ligase	99.58
PLN02381		1066	valyl-tRNA synthetase	99.56
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.51
KOG2007\|consensus		586		99.37
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	99.37
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.31
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.29
PLN02959		1084	aminoacyl-tRNA ligase	99.1
PLN02563		963	aminoacyl-tRNA ligase	99.08
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	98.92
TIGR00463		560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	98.87
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	98.85
KOG0437\|consensus		1080		98.84
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	98.8
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	98.75
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	98.74
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	98.68
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	98.64
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	98.61
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	98.6
PLN03233		523	putative glutamate-tRNA ligase; Provisional	98.59
PRK12558		445	glutamyl-tRNA synthetase; Provisional	98.57
cd00808		239	GluRS_core catalytic core domain of discriminating	98.52
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	98.46
PLN02959		1084	aminoacyl-tRNA ligase	98.44
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	98.44
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	98.43
PLN02907		722	glutamate-tRNA ligase	98.43
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	98.4
PRK05347		554	glutaminyl-tRNA synthetase; Provisional	98.4
PLN02946		557	cysteine-tRNA ligase	98.37
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	98.31
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	98.28
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	98.24
TIGR00440		522	glnS glutaminyl-tRNA synthetase. This protein is a	98.22
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	98.21
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	98.19
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	98.15
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	98.15
KOG0435\|consensus		876		98.13
PTZ00402		601	glutamyl-tRNA synthetase; Provisional	98.13
PF00749		314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	98.1
PRK14703		771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	98.1
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	98.1
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	98.09
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	98.07
COG0008		472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	98.02
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	98.0
PTZ00437		574	glutaminyl-tRNA synthetase; Provisional	97.98
PLN02563		963	aminoacyl-tRNA ligase	97.97
PLN02859		788	glutamine-tRNA ligase	97.91
PLN02627		535	glutamyl-tRNA synthetase	97.84
PRK05710		299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	97.75
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	97.74
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	97.74
KOG1195\|consensus		567		97.64
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	97.57
TIGR03838		272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	97.4
KOG1247\|consensus		567		97.32
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	97.2
KOG0433\|consensus		937		97.14
PRK11893		511	methionyl-tRNA synthetase; Reviewed	96.81
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	96.8
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	96.57
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	96.55
KOG0432\|consensus		995		96.48
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	96.36
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	96.34
KOG1147\|consensus		712		96.34
KOG0432\|consensus		995		96.2
KOG0433\|consensus		937		96.13
PRK12268		556	methionyl-tRNA synthetase; Reviewed	96.01
cd00802		143	class_I_aaRS_core catalytic core domain of class I	95.97
PRK12267		648	methionyl-tRNA synthetase; Reviewed	95.63
KOG0434\|consensus		1070		95.59
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	95.45
PLN02224		616	methionine-tRNA ligase	95.3
KOG4426\|consensus		656		94.51
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	94.24
KOG0435\|consensus		876		92.95
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	92.81
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	90.91
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	89.91
PRK05912		408	tyrosyl-tRNA synthetase; Validated	89.36
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	88.07
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	87.36
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	87.24
cd00674		353	LysRS_core_class_I catalytic core domain of class	84.91
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	84.51
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	84.2
PRK08560		329	tyrosyl-tRNA synthetase; Validated	83.25
cd09287		240	GluRS_non_core catalytic core domain of non-discri	82.87
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	82.54
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	82.0
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	81.83
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	80.48

>KOG2007\|consensus	Back alignment and domain information

Probab=100.00  E-value=2e-113  Score=898.72  Aligned_cols=308  Identities=51%  Similarity=0.884  Sum_probs=280.3

Q ss_pred             hccccCCCCCCCCC-CCCCCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCC
Q psy13464         12 SYATSCESPKWSLP-SGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI   90 (515)
Q Consensus        12 ~~~~~~~~~~~~~p-~~~~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~   90 (515)
                      ..+..+.||+|..| .+..+.|+||||+||+|++|+|.++++|+||+|||||||..||||||+||.||||+|+|+||+||
T Consensus        14 ~~~~~~~q~~w~~p~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy   93 (586)
T KOG2007|consen   14 RAAVKRVQPHWDQPNAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGY   93 (586)
T ss_pred             hcccCCCCcccCCCCCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCc
Confidence            45677889999999 77789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccc
Q psy13464         91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVI  170 (515)
Q Consensus        91 ~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v  170 (515)
                      +|.|||||||||||||+||++-             .                                |           
T Consensus        94 ~V~~vmNiTDVDDKII~RAr~~-------------~--------------------------------m-----------  117 (586)
T KOG2007|consen   94 DVTFVMNITDVDDKIIKRARKE-------------E--------------------------------M-----------  117 (586)
T ss_pred             ceEEEecccchhHHHHHHhhhh-------------h--------------------------------h-----------
Confidence            9999999999999999999831             0                                0           


Q ss_pred             cccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhh
Q psy13464        171 SSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQ  250 (515)
Q Consensus       171 ~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~  250 (515)
                                       ++.+..+.                                                       
T Consensus       118 -----------------~e~~~~l~-------------------------------------------------------  125 (586)
T KOG2007|consen  118 -----------------GEKPLSLS-------------------------------------------------------  125 (586)
T ss_pred             -----------------ccchhhHH-------------------------------------------------------
Confidence                             11111000                                                       


Q ss_pred             hcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHH
Q psy13464        251 KCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPH  330 (515)
Q Consensus       251 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~  330 (515)
                                      ++|    .+                          |+++|.+||.+|||++||+.+|||||||+
T Consensus       126 ----------------~~F----~~--------------------------~e~eF~~DM~~LnvLpPtv~tRVSeyvp~  159 (586)
T KOG2007|consen  126 ----------------ERF----CY--------------------------YEEEFLQDMAALNVLPPTVQTRVSEYVPQ  159 (586)
T ss_pred             ----------------HHH----HH--------------------------HHHHHHHHHHHhCCCCCcccchhhhchHH
Confidence                            111    13                          99999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCeeeecCCcEEEeccCCCC-cceecccCCCC------CccCcccCccCccccccccCCCCcccCCCCC
Q psy13464        331 IQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH-YFKLWGRNENI------TQHAVKRSPFDFALWKSAKPGEPWYESAWGK  403 (515)
Q Consensus       331 iie~I~kLidnG~AYe~kdGsVYFDv~~~~~-YG~Ls~~~~~~------t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~  403 (515)
                      ||+||++||+||+||. .+|+|||||++++. ||+|+++..++      .++..||+|.||||||++|||||+|+||||+
T Consensus       160 II~fIqkIIdnG~aY~-~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~  238 (586)
T KOG2007|consen  160 IIKFIQKIIDNGYAYA-VDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGK  238 (586)
T ss_pred             HHHHHHHHHhCCceee-eCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCC
Confidence            9999999999999999 59999999999995 99999755311      2468999999999999999999999999999


Q ss_pred             CCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceecccc
Q psy13464        404 GRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLS  483 (515)
Q Consensus       404 GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~  483 (515)
                      ||||||||||||+..+||.++|||+||+||.||||||||||+||++...+|+|||+|+|||+++|+|||||++||||..+
T Consensus       239 GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke  318 (586)
T KOG2007|consen  239 GRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKE  318 (586)
T ss_pred             CCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHH
Confidence            99999999999999999999999999999999999999999999998777999999999999999999999999999999


Q ss_pred             ccccccCccccC
Q psy13464        484 GSTIGYTRDTCA  495 (515)
Q Consensus       484 li~~~y~~D~~~  495 (515)
                      .++. |+.+..|
T Consensus       319 ~Lk~-~sp~qLR  329 (586)
T KOG2007|consen  319 ALKK-YSPRQLR  329 (586)
T ss_pred             HHHh-cCHHHHH
Confidence            9999 9988544

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>KOG0436\|consensus	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>KOG2007\|consensus	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG0437\|consensus	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03233 putative glutamate-tRNA ligase; Provisional	Back alignment and domain information

>PRK12558 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>PLN02907 glutamate-tRNA ligase	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK05347 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>TIGR00440 glnS glutaminyl-tRNA synthetase	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0435\|consensus	Back alignment and domain information

>PTZ00402 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>PTZ00437 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02859 glutamine-tRNA ligase	Back alignment and domain information

>PLN02627 glutamyl-tRNA synthetase	Back alignment and domain information

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>KOG1195\|consensus	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase	Back alignment and domain information

>KOG1247\|consensus	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>KOG0433\|consensus	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>KOG0432\|consensus	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>KOG1147\|consensus	Back alignment and domain information

>KOG0432\|consensus	Back alignment and domain information

>KOG0433\|consensus	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG0434\|consensus	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>KOG4426\|consensus	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG0435\|consensus	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		515
3tqo_A		462	Structure Of The Cysteinyl-Trna Synthetase (Cyss) F		3e-38
1li5_A		461	Crystal Structure Of Cysteinyl-Trna Synthetase Leng		1e-32
3c8z_A		414	The 1.6 A Crystal Structure Of Mshc: The Rate Limit		1e-21
3sp1_A		501	Crystal Structure Of Cysteinyl-Trna Synthetase (Cys		6e-17

>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462

Back alignment and structure

Iteration: 1

Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 78/164 (47%), Positives = 97/164 (59%), Gaps = 8/164 (4%) Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367 E + VL P + R ++++P I IQ LLD + AY G + V+FDV F Y KL Sbjct: 101 EDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSH 160 Query: 368 RNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420 R+ + Q KR P DF LWK AKPGEP ++S WG+GRPGWHIECSA +S Sbjct: 161 RHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSIL 220 Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464 G D+H GG+DLKFPHHENE AQS A + +V W H G L Sbjct: 221 GQPFDIHGGGLDLKFPHHENEIAQSEA-GEEKPFVKLWXHAGLL 263

PyMOL of 3tqo

>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461

Back alignment and structure

>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414

Back alignment and structure

>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		515
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	3e-79
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	3e-26
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	3e-09
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	5e-79
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	5e-26
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	3e-09
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	4e-75
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	2e-20
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	2e-05
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	5e-75
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	4e-23
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462	Back alignment and structure

 Score =  254 bits (651), Expect = 3e-79
 Identities = 81/172 (47%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
           R+     E  +   VL P +  R ++++P I   IQ LLD + AY G +  V+FDV  F 
Sbjct: 94  RFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK 153

Query: 361 HYFKLWGRN--ENITQHAV-----KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
            Y KL  R+  E      V     KR P DF LWK AKPGEP ++S WG+GRPGWHIECS
Sbjct: 154 DYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECS 213

Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
           AM+S   G   D+H GG+DLKFPHHENE AQS A   +  +V  W+H G L 
Sbjct: 214 AMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLE 264

PyMOL of 3tqo

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462	Back alignment and structure

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		515
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	100.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	100.0
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	100.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.97
1qtq_A		553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.97
3aii_A		553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.96
2hz7_A		851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.96
1nzj_A		298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.93
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	99.92
1gax_A		862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	99.92
2cfo_A		492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.92
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	99.9
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	99.9
1ffy_A		917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	99.87
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	99.86
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	99.85
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	99.84
2o5r_A		481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.57
3al0_C		592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.45
1j09_A		468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.42
3afh_A		488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.4
4g6z_A		490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.19
2ja2_A		498	Glutamyl-tRNA synthetase; non-discriminating gluta	98.42
4gri_A		512	Glutamate--tRNA ligase; structural genomics, seatt	98.14
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	98.02
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	97.93
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	97.87
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	97.34
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	96.29
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	96.1
2cyb_A		323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	96.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	95.98
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	95.75
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	95.48
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	95.35
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	95.15
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	94.65
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	94.33
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	93.68
2yxn_A		322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	93.44
1n3l_A		372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	92.43
2pid_A		356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	91.97
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	91.83
2dlc_X		394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	91.81
1h3f_A		432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	91.55
1jil_A		420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	91.25
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	91.13
2ts1_A		419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	90.89
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	90.67
2jan_A		432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	90.65
2g36_A		340	Tryptophanyl-tRNA synthetase; TM0492, structural g	90.48
2cya_A		364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	89.03
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	87.96
2zp1_A		314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	87.94
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	87.45
3vgj_A		373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	87.06
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	86.53
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	86.25
2cyc_A		375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	85.7
2j5b_A		348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	84.17
3jxe_A		392	Tryptophanyl-tRNA synthetase; adenosine triphospha	83.18
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	82.76
3i05_A		395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	82.61
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	82.48
1i6k_A		328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	81.91

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

Probab=100.00  E-value=2.4e-95  Score=772.53  Aligned_cols=284  Identities=40%  Similarity=0.673  Sum_probs=265.0

Q ss_pred             CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHH
Q psy13464         30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA  109 (515)
Q Consensus        30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A  109 (515)
                      +.|+||||+||+|++|+|.++++|+||+||||||+.+||||+|+||.+|+++|||+ +.||+|.||+|+||+||||+++|
T Consensus         3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr-~~Gy~V~~v~n~dD~ddKIi~~A   81 (462)
T 3tqo_A            3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLR-MRGYEVTFVRNITDIDDKIIKRA   81 (462)
T ss_dssp             CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEECBBCCCHHHHHHH
T ss_pred             ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHH-HcCCceEEecCcCCCCcHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             HhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhccccc
Q psy13464        110 NSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKE  189 (515)
Q Consensus       110 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~  189 (515)
                      ++.                                                                           +.
T Consensus        82 ~~~---------------------------------------------------------------------------g~   86 (462)
T 3tqo_A           82 GEN---------------------------------------------------------------------------KE   86 (462)
T ss_dssp             HHT---------------------------------------------------------------------------TS
T ss_pred             HHc---------------------------------------------------------------------------CC
Confidence            886                                                                           44


Q ss_pred             chHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHh
Q psy13464        190 DYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVF  269 (515)
Q Consensus       190 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~  269 (515)
                      ++++++                                                                          
T Consensus        87 ~~~e~a--------------------------------------------------------------------------   92 (462)
T 3tqo_A           87 SPAALA--------------------------------------------------------------------------   92 (462)
T ss_dssp             CHHHHH--------------------------------------------------------------------------
T ss_pred             CHHHHH--------------------------------------------------------------------------
Confidence            444322                                                                          


Q ss_pred             hhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecC
Q psy13464        270 ISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSD  349 (515)
Q Consensus       270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kd  349 (515)
                          .+                          |+++|.++|++|||++|+.+||+|+|++.|+++|++|+++|+||+.++
T Consensus        93 ----~~--------------------------~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~  142 (462)
T 3tqo_A           93 ----ER--------------------------FIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQN  142 (462)
T ss_dssp             ----HH--------------------------HHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTT
T ss_pred             ----HH--------------------------HHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecC
Confidence                33                          999999999999999999999999999999999999999999998438


Q ss_pred             CcEEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCC
Q psy13464        350 HSVYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG  422 (515)
Q Consensus       350 GsVYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~  422 (515)
                      |+||||++++++||+||+++..       +..+..||||.||+|||.++||||.|+||||+||||||||||||+.++||.
T Consensus       143 g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~  222 (462)
T 3tqo_A          143 GDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQ  222 (462)
T ss_dssp             SCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCS
T ss_pred             CcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCC
Confidence            9999999999999999998872       223457999999999999999999999999999999999999999999999


Q ss_pred             CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464        423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA  495 (515)
Q Consensus       423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~  495 (515)
                      +||||+||.||+|||||||+||++|++|+ +|++||||+|+|+++|+|||||+|||||+.++++. ||+|+.|
T Consensus       223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR  293 (462)
T 3tqo_A          223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLR  293 (462)
T ss_dssp             SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHH
T ss_pred             CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhh
Confidence            99999999999999999999999999985 89999999999999999999999999999999999 9999765

PyMOL of 3tqo

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A	Back alignment and structure

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}	Back alignment and structure

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}	Back alignment and structure

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A	Back alignment and structure

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}	Back alignment and structure

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}	Back alignment and structure

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}	Back alignment and structure

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A	Back alignment and structure

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*	Back alignment and structure

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}	Back alignment and structure

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A	Back alignment and structure

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*	Back alignment and structure

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*	Back alignment and structure

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*	Back alignment and structure

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}	Back alignment and structure

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}	Back alignment and structure

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*	Back alignment and structure

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}	Back alignment and structure

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		515
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	8e-20
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	4e-18
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	3e-10
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	3e-05
d1pfva2		350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	9e-06
d2d5ba2		348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	9e-05
d1rqga2		361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	0.002

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score = 88.1 bits (217), Expect = 8e-20
 Identities = 68/172 (39%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
           R   E  +  +   +L P    R +  I  I    + L+    AY+  +  V FDV + P
Sbjct: 91  RMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP 150

Query: 361 HYFKL-------WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
            Y  L             +     KR+P DF LWK +K GEP + S WG GRPGWHIECS
Sbjct: 151 TYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECS 210

Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
           AM     G   D+H GG DL FPHHENE AQS    +  Q+VNYW+H+G + 
Sbjct: 211 AMNCKQLGNHFDIHGGGSDLMFPHHENEIAQST-CAHDGQYVNYWMHSGMVM 261

PyMOL of d1li5a2

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		515
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	100.0
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	100.0
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	100.0
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	100.0
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	100.0
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.96
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.95
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.91
d1iq0a2		370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.82
d1f7ua2		348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.75
d1h3na3		494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	99.74
d1j09a2		305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.64
d1nzja_		286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	98.94
d1gtra2		331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	98.24
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	97.86
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	97.7
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	96.76
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	96.13
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	95.83
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	95.3
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	94.55
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	90.53
d1h3fa1		343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	90.13
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	88.78

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-56  Score=439.66  Aligned_cols=282  Identities=37%  Similarity=0.648  Sum_probs=256.3

Q ss_pred             eEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464         32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS  111 (515)
Q Consensus        32 l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~  111 (515)
                      |+||||+||++++|+|.+++++++||||||||+.+||||+|++|+.|+|+|+|+ +.|++|.++.+++|+|.||+.+|++
T Consensus         2 ~~~~~~~~~~~~~f~~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr-~~G~~V~~~~~~dd~G~~i~~~a~~   80 (315)
T d1li5a2           2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKRANE   80 (315)
T ss_dssp             CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHHHHH
T ss_pred             ceEEeCCCCceeeeecCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHH-HcCCcEEEEecccchhHHHHHHHhh
Confidence            799999999999999999999999999999999999999999999999999999 8999999999999999999999988


Q ss_pred             hhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccch
Q psy13464        112 LKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDY  191 (515)
Q Consensus       112 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~  191 (515)
                      .                                                                           +.++
T Consensus        81 ~---------------------------------------------------------------------------~~~~   85 (315)
T d1li5a2          81 N---------------------------------------------------------------------------GESF   85 (315)
T ss_dssp             T---------------------------------------------------------------------------TCCH
T ss_pred             h---------------------------------------------------------------------------hhcc
Confidence            6                                                                           4444


Q ss_pred             HHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhh
Q psy13464        192 KTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFIS  271 (515)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~  271 (515)
                      ++..                                                                            
T Consensus        86 ~e~~----------------------------------------------------------------------------   89 (315)
T d1li5a2          86 VAMV----------------------------------------------------------------------------   89 (315)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            4322                                                                            


Q ss_pred             hhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCc
Q psy13464        272 LPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHS  351 (515)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGs  351 (515)
                        .+                          ++.+|.++++++||.+|+.+++++++++++++.+++|.++|++|....+.
T Consensus        90 --~~--------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~  141 (315)
T d1li5a2          90 --DR--------------------------MIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGD  141 (315)
T ss_dssp             --HH--------------------------HHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSC
T ss_pred             --cc--------------------------chhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccce
Confidence              22                          78899999999999999999999999999999999999999999867889


Q ss_pred             EEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCc
Q psy13464        352 VYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQV  424 (515)
Q Consensus       352 VYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~  424 (515)
                      +|++....+.||..+..+..       .......++|.|+.+||.++.+++.+.+.||.+.|+|+++|.+.-.+.|+..+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~  221 (315)
T d1li5a2         142 VMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHF  221 (315)
T ss_dssp             EEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSE
T ss_pred             EEeecccccccCccccccccccccCCcccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcc
Confidence            99999999999998887751       12345677899999999999999999999999999999999999999999999


Q ss_pred             eEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464        425 DLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA  495 (515)
Q Consensus       425 DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~  495 (515)
                      |++++|.|..+||++..+|...+..+ ..++++|+|.|+|+++|+|||||+||+||+.++++. ||+|++|
T Consensus       222 ~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~-~g~D~lR  290 (315)
T d1li5a2         222 DIHGGGSDLMFPHHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-YDAETVR  290 (315)
T ss_dssp             EEEECBGGGTTTHHHHHHHHHHHHSS-SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT-SCHHHHH
T ss_pred             cccccccccccccccccchhhhcccc-cccccEEEEEEEEecCCcEecCcCCCcccHHHHHHh-CCHHHHH
Confidence            99999999999999999999999976 467899999999999999999999999999999999 9999775

PyMOL of d1li5a2

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure