Psyllid ID: psy13596

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAAAKEDN
Secondary Structure (PSIPRED)
cccccccccccccEEEHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mkgqqehngnsYRFIIISKFGSDLQKLLDEHkefslkntltitdfpiLKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYegsinentsaaaakedn
Flexible Loop (DISEMBL)
mkgqqehngnsYRFIIISKFGSDLQKLLDEHKefslkntltitdfpILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALEtayegsinentsaaaakedn
Low Complexity Region (SEG)
MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAAAKEDN
Disordered region (IsUnstruct)
**********SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAY*****************
Disordered Region (DISOPRED)
*************FIIISKFGSDLQKLLDEHKEF*********DFPILKVMSMEYCY**********************ALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAAL*********************
Disordered Region (DISEMBL)
********GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENT*********
Disordered Region (DISPRO)
*********NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAAAKEDN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
A1Z9S1	147	Biogenesis of lysosome-re	yes	N/A	0.586	0.741	0.651	4e-35
Q0VFD8	125	Biogenesis of lysosome-re	yes	N/A	0.564	0.84	0.657	6e-35
Q5R7L8	153	Biogenesis of lysosome-re	yes	N/A	0.564	0.686	0.628	5e-33
P78537	153	Biogenesis of lysosome-re	yes	N/A	0.564	0.686	0.628	5e-33
D3ZKU7	125	Biogenesis of lysosome-re	yes	N/A	0.564	0.84	0.628	1e-32
Q2NKW0	125	Biogenesis of lysosome-re	yes	N/A	0.564	0.84	0.628	1e-32
O55102	125	Biogenesis of lysosome-re	yes	N/A	0.564	0.84	0.628	2e-32
Q22616	129	Biogenesis of lysosome-re	yes	N/A	0.510	0.736	0.557	1e-24
Q54VX7	135	Biogenesis of lysosome-re	yes	N/A	0.532	0.733	0.525	9e-23
O22929	152	Biogenesis of lysosome-re	yes	N/A	0.521	0.638	0.412	4e-15

>sp|A1Z9S1|BL1S1_DROME Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Drosophila melanogaster GN=blos1 PE=1 SV=2

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 86/109 (78%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           EVRRKEA+ A+N+LTQ+LVD LNVGVAQAYLNQK+LDAEAKQLH  A  F+KQT QWL L
Sbjct: 21  EVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLGATNFAKQTHQWLQL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAAA 182
           +D F++ALK++GDVENWA+ IE DM  I+  LE AY+ S    TS+ A 
Sbjct: 81  IDQFSTALKDLGDVENWARSIEGDMHTINQTLELAYKASRATQTSSGAG 129

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|Q0VFD8|BL1S1_XENTR Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis GN=bloc1s1 PE=2 SV=1

 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 85/105 (80%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RRK+A++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L T A  F+KQT QW+SL
Sbjct: 21  EKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVKTLQTQAAQFAKQTTQWISL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE+DMR+I+ ALE  Y+G +  + S
Sbjct: 81  VENFNQALKEIGDVENWARSIEKDMRIIATALEYVYKGQLQPSAS 125

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Xenopus tropicalis (taxid: 8364)

>sp|Q5R7L8|BL1S1_PONAB Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct: 49  EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct: 109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May counteract the action of the deacetylase SIRT3 by acetylating and regulating proteins of the mitochondrial respiratory chain including ATP5A1 AND NDUFA9. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Pongo abelii (taxid: 9601)

>sp|P78537|BL1S1_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN=BLOC1S1 PE=1 SV=2

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct: 49  EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct: 109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May counteract the action of the deacetylase SIRT3 by acetylating and regulating proteins of the mitochondrial respiratory chain including ATP5A1 AND NDUFA9. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Homo sapiens (taxid: 9606)

>sp|D3ZKU7|BL1S1_RAT Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Rattus norvegicus GN=Bloc1s1 PE=3 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct: 21  EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct: 81  VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May counteract the action of the deacetylase SIRT3 by acetylating and regulating proteins of the mitochondrial respiratory chain including ATP5A1 AND NDUFA9. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Rattus norvegicus (taxid: 10116)

>sp|Q2NKW0|BL1S1_BOVIN Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=BLOC1S1 PE=2 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct: 21  EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct: 81  VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May counteract the action of the deacetylase SIRT3 by acetylating and regulating proteins of the mitochondrial respiratory chain including ATP5A1 AND NDUFA9. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Bos taurus (taxid: 9913)

>sp|O55102|BL1S1_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Mus musculus GN=Bloc1s1 PE=1 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct: 21  EKRRREAIAAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct: 81  VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May counteract the action of the deacetylase SIRT3 by acetylating and regulating proteins of the mitochondrial respiratory chain including ATP5A1 AND NDUFA9. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Mus musculus (taxid: 10090)

>sp|Q22616|BL1S1_CAEEL Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Caenorhabditis elegans GN=blos-1 PE=1 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 68/95 (71%)

Query: 77  RKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDN 136
           + EA+ AA  L+ A+VDHLN  VAQAY NQK+LD EAK+   N+   +KQT+QWL + + 
Sbjct: 20  KNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENNSAALAKQTEQWLFITEG 79

Query: 137 FNSALKEIGDVENWAKVIEEDMRLISAALETAYEG 171
            N ALKEIGDVENW+K IE DM++I+  L  AYE 
Sbjct: 80  LNYALKEIGDVENWSKTIENDMKIITETLRRAYEA 114

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system. May also play a role in intracellular vesicle trafficking.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54VX7|BL1S1_DICDI Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium discoideum GN=bloc1s1 PE=3 SV=1

 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 69/99 (69%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           EV +KEA+++   +T  L+D +N GVA  + NQKKL+ EA+ L  N   FSKQT QW+ L
Sbjct: 21  EVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           ++NFN++LKEIGDVENW+K IE DM  IS  +E  Y  S
Sbjct: 81  IENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLYINS 119

May negatively regulate aerobic respiration through mitochondrial protein lysine-acetylation. May also be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system. May also play a role in intracellular vesicle trafficking.

Dictyostelium discoideum (taxid: 44689)

>sp|O22929|BL1S1_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E  RKEA+  A      LV  +N GV + ++N+K++++E + L      F KQT QWL++
Sbjct: 53  ERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAV 112

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYE 170
               NSA+KEIGD ENW K +E D + I+AA+   +E
Sbjct: 113 THAVNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHE 149

May mediate the vacuolar degradative transport via the intracellular vesicle trafficking from the endosome to the vacuole. Probably regulates the PIN1 and PIN2 homeostasis through its interaction with SNX1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
114053285	127	general control of amino acid synthesis-	0.618	0.905	0.692	2e-37
357613611	127	general control of amino acid synthesis-	0.618	0.905	0.683	9e-37
91090694	126	PREDICTED: similar to RT14 protein [Trib	0.532	0.785	0.777	4e-36
170044487	122	RT14 protein [Culex quinquefasciatus] gi	0.532	0.811	0.737	2e-35
240849438	122	general control of amino acid synthesis-	0.532	0.811	0.737	2e-35
195123293	144	GI20876 [Drosophila mojavensis] gi|19391	0.532	0.687	0.727	3e-35
195025039	142	GH20792 [Drosophila grimshawi] gi|193901	0.532	0.697	0.717	4e-35
156550831	128	PREDICTED: biogenesis of lysosome-relate	0.580	0.843	0.694	4e-35
195150454	146	GL11449 [Drosophila persimilis] gi|19411	0.532	0.678	0.717	4e-35
198457251	142	GA15627 [Drosophila pseudoobscura pseudo	0.532	0.697	0.717	5e-35

>gi|114053285|ref|NP_001040126.1| general control of amino acid synthesis-like protein [Bombyx mori] gi|87248135|gb|ABD36120.1| general control of amino acid synthesis-like protein [Bombyx mori]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 96/117 (82%), Gaps = 2/117 (1%)

Query: 63  KQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAIT 122
           KQA   V+   E +RKE ++AANDLTQALVDHLNVGVAQAYLNQKKLDAEAK LH  AI 
Sbjct: 12  KQAAKRVV--QEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAIN 69

Query: 123 FSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSA 179
           FSKQTQQWL+LV+NF+SALKEIGDVENWA+ IE DM++I+  LE AYE +  + +S+
Sbjct: 70  FSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSS 126

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613611|gb|EHJ68614.1| general control of amino acid synthesis-like protein [Danaus plexippus]

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 97/117 (82%), Gaps = 2/117 (1%)

Query: 63  KQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAIT 122
           KQA   VI   E +RKE ++AANDLTQALVDHLNVGVAQAYLNQKKLDAEAK LH  AI 
Sbjct: 12  KQASKRVI--QEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAIN 69

Query: 123 FSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSA 179
           F+KQTQQWL+LV+NF+S+LKEIGDVENWA+ IE+DM++I+  LE AYE +  + T++
Sbjct: 70  FAKQTQQWLALVENFSSSLKEIGDVENWARSIEKDMKIITDTLERAYETAQEKPTTS 126

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090694|ref|XP_974741.1| PREDICTED: similar to RT14 protein [Tribolium castaneum] gi|270013944|gb|EFA10392.1| hypothetical protein TcasGA2_TC012623 [Tribolium castaneum]

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/99 (77%), Positives = 86/99 (86%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E +RKEA  AA+DLTQALVDHLNVGVAQAYLNQKKLDAEAKQLH +A  FSKQTQQWL+L
Sbjct: 21  ESKRKEACVAASDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHASATNFSKQTQQWLNL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           V++F+SALKEIGDVENWAK IE D+R IS ALE  Y+ S
Sbjct: 81  VESFSSALKEIGDVENWAKSIEGDVRTISTALEIVYKNS 119

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044487|ref|XP_001849877.1| RT14 protein [Culex quinquefasciatus] gi|167867617|gb|EDS31000.1| RT14 protein [Culex quinquefasciatus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 85/99 (85%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E RRKEA+ +AN+LTQ LVDHLNVGVAQAYLNQK+LDAEAKQLH  A  F+KQTQQWL+L
Sbjct: 21  ERRRKEAILSANELTQNLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTQQWLTL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           ++NFN +LKEIGDVENWAK IE DM +I+ ALE AY+ S
Sbjct: 81  IENFNGSLKEIGDVENWAKTIENDMNVITTALEIAYKTS 119

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849438|ref|NP_001155551.1| general control of amino acid synthesis-like [Acyrthosiphon pisum] gi|239790746|dbj|BAH71915.1| ACYPI003941 [Acyrthosiphon pisum]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 87/99 (87%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           +++RKEA++AAN+LT ALV+HLNVGVAQAYLNQKKLDAEAKQLH +AI FSKQT QWLSL
Sbjct: 21  DIKRKEAVNAANELTNALVEHLNVGVAQAYLNQKKLDAEAKQLHQSAIVFSKQTSQWLSL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           +DNFNSALKE+GDVENW + IE DM+ I+  LE AY+ S
Sbjct: 81  IDNFNSALKELGDVENWTRTIENDMQNITTTLEYAYKVS 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123293|ref|XP_002006142.1| GI20876 [Drosophila mojavensis] gi|193911210|gb|EDW10077.1| GI20876 [Drosophila mojavensis]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 84/99 (84%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           EVRRKEA+ A+N+LTQALVDHLNVGVAQAYLNQK+LD EAKQLH  A  F+KQT QWL L
Sbjct: 21  EVRRKEAIEASNELTQALVDHLNVGVAQAYLNQKRLDVEAKQLHVGATNFAKQTHQWLQL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           +DNF+SALKE+GDVENWA+ IE DM++I   LE AY+ S
Sbjct: 81  IDNFSSALKELGDVENWARSIEGDMQVIQQTLELAYKTS 119

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195025039|ref|XP_001985988.1| GH20792 [Drosophila grimshawi] gi|193901988|gb|EDW00855.1| GH20792 [Drosophila grimshawi]

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 86/99 (86%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E+RRKEA+ A+N+LTQ+LVDHLNVGVAQAYLNQK+LDAEAKQLH  A  F+KQT QWL L
Sbjct: 17  EIRRKEAIEASNELTQSLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTHQWLQL 76

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           +DNF+SALKE+GDVENWA+ IE DM++I  +LE AY+ S
Sbjct: 77  IDNFSSALKELGDVENWARSIEGDMQVIQQSLELAYKTS 115

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550831|ref|XP_001601076.1| PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Nasonia vitripennis]

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 89/108 (82%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E +RKEA+ AAN+LTQALVDHLNVGVAQAYLNQKKLDAEAKQL T+A  F+KQTQ WL L
Sbjct: 21  EQKRKEAVQAANNLTQALVDHLNVGVAQAYLNQKKLDAEAKQLQTSATNFAKQTQSWLHL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAA 181
           V++F+SALKEIGDVENWA+ IE DMR I+ ALE +Y+ +     S +A
Sbjct: 81  VESFSSALKEIGDVENWARSIEGDMRTIATALEYSYKATQESQASTSA 128

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150454|ref|XP_002016169.1| GL11449 [Drosophila persimilis] gi|194110016|gb|EDW32059.1| GL11449 [Drosophila persimilis]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 83/99 (83%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           EVRRKEA+ A+N+LTQ+LVDHLNVGVAQAYLNQK+LDAEAKQLH  A  F+KQT QWL L
Sbjct: 21  EVRRKEAIEASNELTQSLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTHQWLQL 80

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           +DNF+ ALKE+GDVENWA+ IE DM +I   LE AY+ S
Sbjct: 81  IDNFSGALKELGDVENWARSIESDMLVIQQTLEVAYKAS 119

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198457251|ref|XP_001360604.2| GA15627 [Drosophila pseudoobscura pseudoobscura] gi|198135914|gb|EAL25179.2| GA15627 [Drosophila pseudoobscura pseudoobscura]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 83/99 (83%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           EVRRKEA+ A+N+LTQ+LVDHLNVGVAQAYLNQK+LDAEAKQLH  A  F+KQT QWL L
Sbjct: 17  EVRRKEAIEASNELTQSLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTHQWLQL 76

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
           +DNF+ ALKE+GDVENWA+ IE DM +I   LE AY+ S
Sbjct: 77  IDNFSGALKELGDVENWARSIESDMLVIQQTLEVAYKAS 115

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
FB|FBgn0050077	147	blos1 "BLOC-1 subunit 1" [Dros	0.580	0.734	0.657	2.5e-33
UNIPROTKB|Q0VFD8	125	bloc1s1 "Biogenesis of lysosom	0.564	0.84	0.657	4.1e-33
UNIPROTKB|Q2NKW0	125	BLOC1S1 "Biogenesis of lysosom	0.564	0.84	0.628	1.1e-30
UNIPROTKB|P78537	153	BLOC1S1 "Biogenesis of lysosom	0.564	0.686	0.628	1.1e-30
UNIPROTKB|F2Z5S5	152	LOC100517399 "Uncharacterized	0.564	0.690	0.628	1.1e-30
UNIPROTKB|Q5R7L8	153	BLOC1S1 "Biogenesis of lysosom	0.564	0.686	0.628	1.1e-30
MGI|MGI:1195276	125	Bloc1s1 "biogenesis of lysosom	0.564	0.84	0.628	1.1e-30
RGD|1307564	125	Bloc1s1 "biogenesis of lysosom	0.564	0.84	0.628	1.1e-30
UNIPROTKB|Q22616	129	blos-1 "Biogenesis of lysosome	0.521	0.751	0.556	1.6e-24
DICTYBASE|DDB_G0280077	135	bloc1s1 "biogenesis of lysosom	0.537	0.740	0.524	1.4e-23

FB|FBgn0050077 blos1 "BLOC-1 subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 71/108 (65%), Positives = 86/108 (79%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             EVRRKEA+ A+N+LTQ+LVD LNVGVAQAYLNQK+LDAEAKQLH  A  F+KQT QWL L
Sbjct:    21 EVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLGATNFAKQTHQWLQL 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAA 181
             +D F++ALK++GDVENWA+ IE DM  I+  LE AY+ S    TS+ A
Sbjct:    81 IDQFSTALKDLGDVENWARSIEGDMHTINQTLELAYKASRATQTSSGA 128

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0VFD8 bloc1s1 "Biogenesis of lysosome-related organelles complex 1 subunit 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 69/105 (65%), Positives = 85/105 (80%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RRK+A++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L T A  F+KQT QW+SL
Sbjct:    21 EKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVKTLQTQAAQFAKQTTQWISL 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE+DMR+I+ ALE  Y+G +  + S
Sbjct:    81 VENFNQALKEIGDVENWARSIEKDMRIIATALEYVYKGQLQPSAS 125

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0009060 "aerobic respiration" evidence=ISS

GO:0018394 "peptidyl-lysine acetylation" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|Q2NKW0 BLOC1S1 "Biogenesis of lysosome-related organelles complex 1 subunit 1" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    21 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:    81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

GO:0031175 "neuron projection development" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0018394 "peptidyl-lysine acetylation" evidence=ISS

GO:0009060 "aerobic respiration" evidence=ISS

UNIPROTKB|P78537 BLOC1S1 "Biogenesis of lysosome-related organelles complex 1 subunit 1" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    49 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:   109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153

GO:0031083 "BLOC-1 complex" evidence=IDA

GO:0032438 "melanosome organization" evidence=NAS

GO:0060155 "platelet dense granule organization" evidence=NAS

GO:0031175 "neuron projection development" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0018394 "peptidyl-lysine acetylation" evidence=IMP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z5S5 LOC100517399 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    48 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 107

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:   108 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 152

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|Q5R7L8 BLOC1S1 "Biogenesis of lysosome-related organelles complex 1 subunit 1" [Pongo abelii (taxid:9601)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    49 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:   109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0009060 "aerobic respiration" evidence=ISS

GO:0018394 "peptidyl-lysine acetylation" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

MGI|MGI:1195276 Bloc1s1 "biogenesis of lysosome-related organelles complex-1, subunit 1" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    21 EKRRREAIAAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:    81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0009060 "aerobic respiration" evidence=ISO

GO:0018394 "peptidyl-lysine acetylation" evidence=ISO

GO:0031083 "BLOC-1 complex" evidence=ISO;IDA

GO:0031175 "neuron projection development" evidence=NAS

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

RGD|1307564 Bloc1s1 "biogenesis of lysosomal organelles complex-1, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E RR+EA++AA  LT+ALVDHLNVGVAQAY+NQ+KLD E K L   A  F+KQT QW+ +
Sbjct:    21 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
             V+NFN ALKEIGDVENWA+ IE DMR I+ ALE  Y+G +    S
Sbjct:    81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO;ISS

GO:0005759 "mitochondrial matrix" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009060 "aerobic respiration" evidence=ISO;ISS

GO:0018394 "peptidyl-lysine acetylation" evidence=ISO;ISS

GO:0031083 "BLOC-1 complex" evidence=ISO;ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISO;ISS

UNIPROTKB|Q22616 blos-1 "Biogenesis of lysosome-related organelles complex 1 subunit 1" [Caenorhabditis elegans (taxid:6239)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 54/97 (55%), Positives = 69/97 (71%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             E  + EA+ AA  L+ A+VDHLN  VAQAY NQK+LD EAK+   N+   +KQT+QWL +
Sbjct:    17 EKLKNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENNSAALAKQTEQWLFI 76

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYE 170
              +  N ALKEIGDVENW+K IE DM++I+  L  AYE
Sbjct:    77 TEGLNYALKEIGDVENWSKTIENDMKIITETLRRAYE 113

GO:0016197 "endosomal transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031083 "BLOC-1 complex" evidence=TAS

DICTYBASE|DDB_G0280077 bloc1s1 "biogenesis of lysosome-related organelles complex-1, subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/103 (52%), Positives = 71/103 (68%)

Query:    74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
             EV +KEA+++   +T  L+D +N GVA  + NQKKL+ EA+ L  N   FSKQT QW+ L
Sbjct:    21 EVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHL 80

Query:   134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINEN 176
             ++NFN++LKEIGDVENW+K IE DM  IS  +E  Y   IN N
Sbjct:    81 IENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY---INSN 120

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VFD8	BL1S1_XENTR	No assigned EC number	0.6571	0.5645	0.84	yes	N/A
Q5R7L8	BL1S1_PONAB	No assigned EC number	0.6285	0.5645	0.6862	yes	N/A
Q22616	BL1S1_CAEEL	No assigned EC number	0.5578	0.5107	0.7364	yes	N/A
Q54VX7	BL1S1_DICDI	No assigned EC number	0.5252	0.5322	0.7333	yes	N/A
Q2NKW0	BL1S1_BOVIN	No assigned EC number	0.6285	0.5645	0.84	yes	N/A
O55102	BL1S1_MOUSE	No assigned EC number	0.6285	0.5645	0.84	yes	N/A
A1Z9S1	BL1S1_DROME	No assigned EC number	0.6513	0.5860	0.7414	yes	N/A
D3ZKU7	BL1S1_RAT	No assigned EC number	0.6285	0.5645	0.84	yes	N/A
P78537	BL1S1_HUMAN	No assigned EC number	0.6285	0.5645	0.6862	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
pfam06320	121	pfam06320, GCN5L1, GCN5-like protein 1 (GCN5L1)	2e-48

>gnl|CDD|218987 pfam06320, GCN5L1, GCN5-like protein 1 (GCN5L1)

 Score =  153 bits (388), Expect = 2e-48
 Identities = 62/105 (59%), Positives = 81/105 (77%)

Query: 74  EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
           E  R+EA+++AN LT ALVD +N GVAQAY NQK+L+AEAK L   +  F+KQT+QWL+L
Sbjct: 17  ERLRREAIASANALTDALVDTVNAGVAQAYANQKRLEAEAKALQATSAAFAKQTEQWLTL 76

Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
           ++NFN+ALKEIGDVENWA+ IE DM+ I++ALE AY+       S
Sbjct: 77  IENFNTALKEIGDVENWARSIENDMKTIASALEEAYKAKRPAQPS 121

This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG3390|consensus	120		100.0
PF06320	121	GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IP	100.0
KOG1163|consensus	341		99.81
KOG1165|consensus	449		99.79
KOG1164|consensus	322		99.39
PHA02882	294	putative serine/threonine kinase; Provisional	97.75
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	97.53
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	97.38
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	97.35
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.3
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	97.24
PTZ00284	467	protein kinase; Provisional	97.23
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	97.23
KOG0663|consensus	419		97.22
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	97.22
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	97.21
KOG0581|consensus	364		97.2
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.2
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	97.2
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	97.18
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	97.17
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	97.17
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	97.16
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	97.15
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	97.15
PHA03209	357	serine/threonine kinase US3; Provisional	97.14
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	97.14
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	97.13
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	97.12
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	97.12
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	97.12
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	97.12
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.11
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	97.11
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	97.1
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	97.1
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	97.09
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	97.06
KOG0661|consensus	538		97.06
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	97.06
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	97.05
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	97.04
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.04
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	97.04
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	97.04
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.02
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	97.02
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	97.02
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	97.01
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	97.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	96.99
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	96.99
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	96.99
PHA03207	392	serine/threonine kinase US3; Provisional	96.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	96.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	96.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	96.95
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	96.95
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	96.94
PHA03212	391	serine/threonine kinase US3; Provisional	96.94
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.92
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	96.91
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	96.9
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	96.9
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	96.89
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	96.88
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	96.86
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	96.85
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	96.84
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	96.84
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	96.83
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	96.81
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	96.81
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	96.81
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	96.8
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	96.8
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	96.79
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	96.79
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	96.78
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	96.78
PTZ00263	329	protein kinase A catalytic subunit; Provisional	96.78
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	96.77
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	96.77
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	96.76
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	96.76
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	96.75
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	96.75
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	96.75
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	96.73
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	96.72
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	96.72
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	96.72
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	96.71
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	96.7
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	96.7
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	96.69
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	96.69
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	96.68
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	96.68
PTZ00036	440	glycogen synthase kinase; Provisional	96.68
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	96.67
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	96.66
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	96.66
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	96.65
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.65
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	96.64
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	96.63
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	96.63
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	96.61
PHA03211	461	serine/threonine kinase US3; Provisional	96.61
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	96.59
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	96.58
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	96.58
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	96.57
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	96.57
PTZ00024	335	cyclin-dependent protein kinase; Provisional	96.56
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	96.55
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	96.54
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	96.53
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	96.53
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	96.53
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	96.52
KOG0616|consensus	355		96.52
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	96.51
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	96.49
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	96.48
KOG0615|consensus	475		96.48
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	96.47
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	96.46
KOG0594|consensus	323		96.44
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	96.43
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	96.43
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	96.42
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	96.42
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	96.41
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	96.4
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.39
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	96.38
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	96.36
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	96.36
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	96.35
PLN00009	294	cyclin-dependent kinase A; Provisional	96.35
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	96.35
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	96.34
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	96.33
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	96.32
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	96.31
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	96.3
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	96.3
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	96.3
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	96.28
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	96.24
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	96.24
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	96.22
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	96.21
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	96.18
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	96.17
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	96.16
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	96.16
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	96.16
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	96.16
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	96.15
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	96.14
KOG0671|consensus	415		96.13
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	96.13
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	96.13
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	96.12
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	96.12
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	96.12
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	96.12
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	96.1
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	96.08
KOG0669|consensus	376		96.08
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	96.08
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	96.08
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	96.06
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	96.06
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	96.05
KOG0660|consensus	359		96.05
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	96.04
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	96.03
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	96.01
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	96.01
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	96.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	96.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	95.99
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	95.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	95.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	95.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	95.93
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	95.93
KOG1290|consensus	590		95.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	95.92
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	95.92
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	95.9
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	95.89
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	95.89
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	95.88
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	95.87
PTZ00267	478	NIMA-related protein kinase; Provisional	95.87
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	95.87
KOG0659|consensus	318		95.86
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	95.86
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	95.85
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	95.85
KOG0595|consensus	429		95.84
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	95.77
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	95.76
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	95.76
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	95.75
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	95.74
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	95.74
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	95.72
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	95.71
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	95.71
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	95.71
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	95.69
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	95.69
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	95.67
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	95.65
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	95.62
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	95.62
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	95.62
KOG0667|consensus	586		95.6
KOG0198|consensus	313		95.6
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	95.6
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	95.59
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	95.59
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	95.58
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	95.57
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	95.57
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	95.57
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	95.56
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	95.54
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	95.52
KOG0662|consensus	292		95.51
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	95.49
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	95.49
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	95.48
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	95.48
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	95.46
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	95.45
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	95.41
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	95.41
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	95.4
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	95.39
PHA02988	283	hypothetical protein; Provisional	95.39
KOG0600|consensus	560		95.38
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	95.38
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	95.37
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	95.35
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	95.32
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	95.32
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	95.32
PLN00181	793	protein SPA1-RELATED; Provisional	95.31
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	95.29
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	95.29
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	95.27
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	95.26
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	95.23
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	95.2
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	95.19
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	95.18
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	95.13
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	95.11
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	95.11
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	95.1
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	95.08
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	95.08
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	95.07
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	95.06
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	95.06
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	95.06
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	95.05
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	95.04
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	94.98
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	94.91
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	94.91
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	94.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	94.9
PTZ00266	1021	NIMA-related protein kinase; Provisional	94.89
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	94.88
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	94.88
KOG0583|consensus	370		94.87
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	94.85
KOG0605|consensus	550		94.83
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	94.79
PHA03210	501	serine/threonine kinase US3; Provisional	94.75
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	94.75
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	94.74
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	94.72
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	94.71
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	94.71
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	94.68
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	94.68
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	94.6
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	94.53
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	94.49
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	94.44
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	94.43
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	94.42
KOG0658|consensus	364		94.38
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	94.36
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	94.31
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	94.29
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	94.26
KOG0589|consensus	426		94.25
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	94.17
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	94.11
PTZ00283	496	serine/threonine protein kinase; Provisional	94.1
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	94.06
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	93.88
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	93.75
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	93.69
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	93.51
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	93.51
KOG0192|consensus	362		93.33
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	93.33
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	93.25
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	93.1
KOG0984|consensus	282		93.05
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.93
KOG0614|consensus	732		92.85
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	92.76
KOG0575|consensus	592		92.6
KOG0592|consensus	604		92.6
KOG0596|consensus	677		92.56
smart00090	237	RIO RIO-like kinase.	92.47
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	92.4
PRK14879	211	serine/threonine protein kinase; Provisional	92.4
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	92.38
KOG0591|consensus	375		92.35
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	92.32
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	92.19
KOG0598|consensus	357		92.13
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	92.1
PRK10345	210	hypothetical protein; Provisional	91.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	91.84
KOG1989|consensus	738		91.73
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	91.7
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	91.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	91.5
PLN00034	353	mitogen-activated protein kinase kinase; Provision	91.18
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	91.06
KOG0664|consensus	449		90.6
KOG0574|consensus	502		90.47
KOG0597|consensus	808		90.04
KOG0610|consensus	459		89.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	89.89
KOG0666|consensus	438		89.63
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	89.15
KOG0599|consensus	411		89.01
KOG0612|consensus	1317		88.7
KOG0032|consensus	382		86.35
PRK09605	535	bifunctional UGMP family protein/serine/threonine	86.3
PRK09188	365	serine/threonine protein kinase; Provisional	85.83
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	85.78
KOG0194|consensus	474		84.86
KOG0033|consensus	355		84.8
KOG1027|consensus	903		84.47
KOG0593|consensus	396		84.43
KOG0578|consensus	550		84.43
KOG1167|consensus	418		82.45
PF09763	701	Sec3_C: Exocyst complex component Sec3; InterPro:	82.2
PLN03224	507	probable serine/threonine protein kinase; Provisio	81.88
KOG0577|consensus	948		80.91
KOG0665|consensus	369		80.48

>KOG3390|consensus

Probab=100.00  E-value=1.3e-38  Score=240.52  Aligned_cols=119  Identities=54%  Similarity=0.721  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q psy13596         47 ILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQ  126 (186)
Q Consensus        47 ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~Lv~~Ln~gvs~~y~Nqk~ie~E~K~L~~~Ta~laKq  126 (186)
                      ||+.|+++|+.     +|..+|+  .+|+.|++|+.++..++++||++||.||+++|.||++|+.|.|.|..+++.|+||
T Consensus         1 ml~~llKEhs~-----kq~eRre--lqEK~r~EAI~aA~~l~~alVdhlN~gVaqay~Nqkrld~E~k~l~~~~A~faKQ   73 (120)
T KOG3390|consen    1 MLPFLLKEHSE-----KQSERRE--LQEKTRKEAIRAAARLADALVDHLNGGVAQAYVNQKRLDSEIKNLAITVAKFAKQ   73 (120)
T ss_pred             CccHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999     9999999  7999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13596        127 TQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS  172 (186)
Q Consensus       127 t~qW~~l~~~~~~~LKEiGDveNWa~~iE~D~~~i~~tl~~v~~~~  172 (186)
                      |+||+.+++.+|.+||||||||||+++||.||+.|.+|||++|++.
T Consensus        74 T~QWl~vte~~N~AlKEIGDvENW~ktiE~Dmk~It~alr~~ye~q  119 (120)
T KOG3390|consen   74 TDQWLAVTEAVNSALKEIGDVENWMKTIEFDMKKITAALRNIYEDQ  119 (120)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999864

>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences

Probab=100.00  E-value=2e-37  Score=240.99  Aligned_cols=121  Identities=56%  Similarity=0.772  Sum_probs=116.9

Q ss_pred             HHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH
Q psy13596         51 MSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQW  130 (186)
Q Consensus        51 l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~Lv~~Ln~gvs~~y~Nqk~ie~E~K~L~~~Ta~laKqt~qW  130 (186)
                      |.++|+.     +|..+|+  .+++.|++|++|+.+++++|++.||.||+.+|.|+++|++|+|+|..++++|+|+|.+|
T Consensus         1 ~~keH~~-----~q~~~re--~~e~~r~ea~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw   73 (121)
T PF06320_consen    1 MVKEHQA-----RQAELRE--EQERARKEAIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQW   73 (121)
T ss_pred             CcHHHHH-----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999     9999999  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy13596        131 LSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS  178 (186)
Q Consensus       131 ~~l~~~~~~~LKEiGDveNWa~~iE~D~~~i~~tl~~v~~~~~~~~~~  178 (186)
                      +++++.|+++|||||||||||++||+||++|++|||+|+++..+..+|
T Consensus        74 ~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~~~~~~~~~  121 (121)
T PF06320_consen   74 LKLVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVYEGSEKEQTS  121 (121)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            999999999999999999999999999999999999999998876654

The function of this family is unknown [,].

>KOG1163|consensus

Probab=99.81  E-value=8.9e-22  Score=170.69  Aligned_cols=106  Identities=15%  Similarity=0.300  Sum_probs=96.3

Q ss_pred             cCCCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh----hHHHHHHHH
Q psy13596          7 HNGNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG----LEVRRKEAL   81 (186)
Q Consensus         7 ~~~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~----~e~~rk~a~   81 (186)
                      ..+..|+.||||+|||+|++||+.|. +|+.||||+||| |||.++++.|.+      .++||||||    ++.+|.   
T Consensus        80 ~~e~~ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaD-Qml~RiEyvH~r------~fiHRDIKPdNFLMGlgrh---  149 (341)
T KOG1163|consen   80 GTEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLAD-QMLSRIEYVHLR------NFIHRDIKPDNFLMGLGRH---  149 (341)
T ss_pred             ccccccceeeeeccCccHHHHHHHHhhhhhHHhHHHHHH-HHHHHHHHHHhh------ccccccCCccceeeccccc---
Confidence            35678999999999999999999999 899999999998 999999999999      999999998    777776   


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhhh----HHHHHHHHHHHHHHhhHHHH
Q psy13596         82 SAANDLTQALVDHLNVGVAQAYLNQKKLD----AEAKQLHTNAITFSKQTQQW  130 (186)
Q Consensus        82 ~s~~~l~~~Lv~~Ln~gvs~~y~Nqk~ie----~E~K~L~~~Ta~laKqt~qW  130 (186)
                             -+-++.||||+|+.|.+.++-.    ++.+. .++|+||++++.+.
T Consensus       150 -------~~kl~LIDFGLaKky~d~~t~~HIpyre~r~-ltGTaRYASinAh~  194 (341)
T KOG1163|consen  150 -------CNKLYLIDFGLAKKYRDIRTRQHIPYREDRN-LTGTARYASINAHL  194 (341)
T ss_pred             -------cceEEEEeccchhhhccccccccCccccCCc-cceeeeehhhhhhh
Confidence                   6789999999999999877655    77787 89999999998765

>KOG1165|consensus

Probab=99.79  E-value=6.7e-22  Score=177.11  Aligned_cols=122  Identities=16%  Similarity=0.248  Sum_probs=101.6

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh----hHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG----LEVRRKEALSA   83 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~----~e~~rk~a~~s   83 (186)
                      .+.|+.||||+|||||++||+.|| +||.|||+||| +|||++|+++|.+      ..|-|||||    +++-       
T Consensus        95 eG~~NiLVidLLGPSLEDLFD~CgR~FSvKTV~miA-~Qmi~rie~vH~k------~LIYRDIKPdNFLIGrp-------  160 (449)
T KOG1165|consen   95 EGKYNILVIDLLGPSLEDLFDLCGRRFSVKTVAMIA-KQMITRIEYVHEK------DLIYRDIKPDNFLIGRP-------  160 (449)
T ss_pred             ccchhhhhhhhhCcCHHHHHHHhcCcccHHhHHHHH-HHHHHHHHHHHhc------ceeecccCccceeecCC-------
Confidence            467999999999999999999999 99999999999 8999999999999      999999998    4441       


Q ss_pred             HHHHHHHHHHHhhHhHHHHhhhhhhhh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccH
Q psy13596         84 ANDLTQALVDHLNVGVAQAYLNQKKLD----AEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDV  147 (186)
Q Consensus        84 ~~~l~~~Lv~~Ln~gvs~~y~Nqk~ie----~E~K~L~~~Ta~laKqt~qW~~l~~~~~~~LKEiGDv  147 (186)
                       .+=..++++.||||+++-|+++++-.    +|-|. ..+||||.+++..+-+.- .=++-|--+|.|
T Consensus       161 -~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KS-LsGTARYMSINTHlGrEQ-SRRDDLEaLGHv  225 (449)
T KOG1165|consen  161 -GTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKS-LSGTARYMSINTHLGREQ-SRRDDLEALGHV  225 (449)
T ss_pred             -CCCCCceEEEEeccchhhhcCccccccCccccccc-cccceeeeEeeccccchh-hhhhhHHHhhhh
Confidence             11127799999999999999999988    88888 899999999998776542 223334444443

>KOG1164|consensus

Probab=99.39  E-value=7.1e-15  Score=128.04  Aligned_cols=104  Identities=18%  Similarity=0.274  Sum_probs=82.7

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh----hHHHHHHHHH
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG----LEVRRKEALS   82 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~----~e~~rk~a~~   82 (186)
                      ...|+||||+++|++|++|+..++  +||.+||+.|| +|+|+.|+.+|+.      +++||||||    .+....    
T Consensus        92 ~~~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia-~q~l~~l~~lH~~------G~iHRDiKp~N~~~g~~~~----  160 (322)
T KOG1164|consen   92 TEDFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIA-IQNLNALEDLHSK------GFIHRDIKPENFVVGQSSR----  160 (322)
T ss_pred             CCceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHH-HHHHHHHHHHHhc------CcccCCcCHHHeeecCCCC----
Confidence            568999999999999999997654  89999999999 8999999999999      999999998    332210    


Q ss_pred             HHHHHHHHHHHHhhHhHHH--Hhhhhhh----hhHHHHHHHHHHHHHHhhH
Q psy13596         83 AANDLTQALVDHLNVGVAQ--AYLNQKK----LDAEAKQLHTNAITFSKQT  127 (186)
Q Consensus        83 s~~~l~~~Lv~~Ln~gvs~--~y~Nqk~----ie~E~K~L~~~Ta~laKqt  127 (186)
                          -....++.||+|++.  .|.+...    -.+..+....+|.+|++.+
T Consensus       161 ----~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~  207 (322)
T KOG1164|consen  161 ----SEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASIN  207 (322)
T ss_pred             ----cccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHH
Confidence                002468999999999  6555442    2233345678999999976

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.75  E-value=2e-05  Score=66.78  Aligned_cols=84  Identities=14%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             cccCCCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHH
Q psy13596          5 QEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAA   84 (186)
Q Consensus         5 ~~~~~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~   84 (186)
                      .......|+|++|+.++.++.+++.....++...++.|+ .|++..|.+.|+.      +.+||||||.-..    +.  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~iiHrDiKp~Nil----l~--  160 (294)
T PHA02882         94 FKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIM-KDMLTTLEYIHEH------GISHGDIKPENIM----VD--  160 (294)
T ss_pred             EecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCHHHEE----Ec--
Confidence            334455699999999999999999865568999999999 7999999999998      9999999882110    00  


Q ss_pred             HHHHHHHHHHhhHhHHHHhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYL  104 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~  104 (186)
                         ....+...|||++..+.
T Consensus       161 ---~~~~~~l~DFGla~~~~  177 (294)
T PHA02882        161 ---GNNRGYIIDYGIASHFI  177 (294)
T ss_pred             ---CCCcEEEEEcCCceeec
Confidence               01123367889887653

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.53  E-value=6e-05  Score=66.13  Aligned_cols=58  Identities=17%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....|.|||||.+ |.+|..++..++.|+..++..++ .|++..|.+.|+.      +.+||||||
T Consensus        71 ~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~-~ql~~aL~~LH~~------givHrDlkp  129 (377)
T cd05629          71 QDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYM-AECVLAIEAVHKL------GFIHRDIKP  129 (377)
T ss_pred             EcCCeeEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            3557899999998 78999998866689999999999 6999999999998      999999997

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.38  E-value=0.00012  Score=60.94  Aligned_cols=63  Identities=22%  Similarity=0.233  Sum_probs=54.3

Q ss_pred             cccccCCCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          3 GQQEHNGNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         3 G~~~~~~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |.+...+..+.|+|||.+ |.+|.+++.... .++..+++.+. .||+..|.+.|+.      +.+|++|+|
T Consensus        73 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~-~~i~~aL~~lH~~------gi~H~dlkp  137 (284)
T cd05079          73 GICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYA-VQICKGMDYLGSR------QYVHRDLAA  137 (284)
T ss_pred             eEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceeecccch
Confidence            334444457889999999 899999988766 79999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.35  E-value=0.00014  Score=63.10  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|..++...+.|+...+..++ .|++..|.+.|..      +.+||||||
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~-~qi~~aL~~lH~~------~ivH~Dlkp  129 (364)
T cd05599          72 DENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYI-AETILAIDSIHKL------GYIHRDIKP  129 (364)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeccCCH
Confidence            457899999998 78999988866689999999999 7999999999999      999999997

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.30  E-value=0.00019  Score=60.98  Aligned_cols=55  Identities=7%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-|+|||.+|.+|.+++..++.|+...+..++ .|+++.|.+.|+.      +.+||||+|
T Consensus        77 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~-~qi~~aL~~LH~~------~ivH~dlkp  131 (338)
T cd07859          77 KDIYVVFELMESDLHQVIKANDDLTPEHHQFFL-YQLLRALKYIHTA------NVFHRDLKP  131 (338)
T ss_pred             ceEEEEEecCCCCHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            356999999999999998866689999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=97.24  E-value=0.00022  Score=61.25  Aligned_cols=57  Identities=11%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|......+++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~~~~~~~~~-~qi~~al~~LH~~------~ivH~dlkp  124 (316)
T cd05592          67 TKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYA-AEIICGLQFLHKK------GIIYRDLKL  124 (316)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEEeCCCCH
Confidence            456889999998 78999888876699999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PTZ00284 protein kinase; Provisional

Probab=97.23  E-value=0.00024  Score=64.57  Aligned_cols=57  Identities=16%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++||+.+|.+|.+.+...+.|+...+..|+ .|++..|.+.|.+     .+++||||||
T Consensus       204 ~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~-~qi~~aL~yLH~~-----~gIiHrDlKP  260 (467)
T PTZ00284        204 TGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQII-FQTGVALDYFHTE-----LHLMHTDLKP  260 (467)
T ss_pred             CceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhc-----CCeecCCCCH
Confidence            4577999999999999988876789999999999 7999999999985     4899999997

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=97.23  E-value=0.00025  Score=60.81  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|..++...+.|+...+..++ .|++..|.+.|..      +.+|+||+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~-~qi~~aL~~LH~~------giiH~Dlkp  129 (350)
T cd05573          72 DEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYI-AELVLALDSVHKL------GFIHRDIKP  129 (350)
T ss_pred             cCCeEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            457899999998 78999999877789999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0663|consensus

Probab=97.22  E-value=4.4e-05  Score=69.50  Aligned_cols=120  Identities=18%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH-HHHHHHHHHHH
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR-RKEALSAANDL   87 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~-rk~a~~s~~~l   87 (186)
                      .+-=|||||-+-.||..+.+.-+ +|+.+-|--|. +|+|+.+.+.|..      -++|||+|+--.. -.         
T Consensus       149 ~d~iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~-~QlL~glk~lH~~------wilHRDLK~SNLLm~~---------  212 (419)
T KOG0663|consen  149 MDKIYIVMEYVEHDLKSLMETMKQPFLPGEVKTLM-LQLLRGLKHLHDN------WILHRDLKTSNLLLSH---------  212 (419)
T ss_pred             cceeeeeHHHHHhhHHHHHHhccCCCchHHHHHHH-HHHHHHHHHHhhc------eeEecccchhheeecc---------
Confidence            34579999999999999999878 99999999999 8999999999999      8999998862110 00         


Q ss_pred             HHHHHHHhhHhHHHHhhhhhh-hh-------HHHHHHHHHHHHHHhhHHHHHH------------------HHHHHHHHh
Q psy13596         88 TQALVDHLNVGVAQAYLNQKK-LD-------AEAKQLHTNAITFSKQTQQWLS------------------LVDNFNSAL  141 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~Nqk~-ie-------~E~K~L~~~Ta~laKqt~qW~~------------------l~~~~~~~L  141 (186)
                       ...+..-|||+|..|.++.+ ..       =.+=+|.-++..|..-.+=|.-                  -.++++.-.
T Consensus       213 -~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If  291 (419)
T KOG0663|consen  213 -KGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIF  291 (419)
T ss_pred             -CCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHH
Confidence             12345579999999999832 11       2245667777888888888852                  456777777


Q ss_pred             hhhcc
Q psy13596        142 KEIGD  146 (186)
Q Consensus       142 KEiGD  146 (186)
                      +.+|-
T Consensus       292 ~llGt  296 (419)
T KOG0663|consen  292 KLLGT  296 (419)
T ss_pred             HHhCC
Confidence            77774

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=97.22  E-value=0.00024  Score=61.22  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~-~qi~~al~~lH~~------~ivHrDlkp  124 (327)
T cd05617          67 TTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYA-AEICIALNFLHER------GIIYRDLKL  124 (327)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            446789999999 78999888866689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=97.21  E-value=0.00028  Score=59.64  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.++.+|...+..+. .++...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        74 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivH~dlkp  131 (303)
T cd07869          74 TKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFL-FQLLRGLSYIHQR------YILHRDLKP  131 (303)
T ss_pred             cCCeEEEEEECCCcCHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            456889999999999999888766 89999999999 7999999999999      999999997

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0581|consensus

Probab=97.20  E-value=6.5e-05  Score=68.28  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=75.7

Q ss_pred             cccccCCCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHH
Q psy13596          3 GQQEHNGNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEAL   81 (186)
Q Consensus         3 G~~~~~~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~   81 (186)
                      |.+.+++. -=.|+||.++ -||.+++..-|+++++.+-.|| .++|+.|.+.|..     ++++||||||.-..-+   
T Consensus       144 gaF~~~~~-~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia-~~VL~GL~YLh~~-----~~IIHRDIKPsNlLvN---  213 (364)
T KOG0581|consen  144 GAFYSNGE-EISICMEYMDGGSLDDILKRVGRIPEPVLGKIA-RAVLRGLSYLHEE-----RKIIHRDIKPSNLLVN---  213 (364)
T ss_pred             EEEEeCCc-eEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHhhc-----cCeeeccCCHHHeeec---
Confidence            44555554 5679999996 8999999988899999999999 7999999999986     6999999998422111   


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHhhhhhhhhHHHHHHHHHHHHHHh
Q psy13596         82 SAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSK  125 (186)
Q Consensus        82 ~s~~~l~~~Lv~~Ln~gvs~~y~Nqk~ie~E~K~L~~~Ta~laK  125 (186)
                            +..-|...|||||..-.|.  +   +.. ..||..|.+
T Consensus       214 ------skGeVKicDFGVS~~lvnS--~---a~t-fvGT~~YMs  245 (364)
T KOG0581|consen  214 ------SKGEVKICDFGVSGILVNS--I---ANT-FVGTSAYMS  245 (364)
T ss_pred             ------cCCCEEeccccccHHhhhh--h---ccc-ccccccccC
Confidence                  0223567899999988886  1   222 556665543

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.20  E-value=0.00033  Score=57.38  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|.+.+..+. .++..+++.++ .|++..+.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~i~H~dl~p  128 (256)
T cd05059          70 KQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMC-SDVCEAMEYLESN------GFIHRDLAA  128 (256)
T ss_pred             CCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHHC------CcccccccH
Confidence            446899999998 889999888766 89999999999 6999999999998      899999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=97.20  E-value=0.00027  Score=61.07  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+|.|+|||.+ |.+|..++..++ .|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        72 ~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~-~qi~~~L~~lH~~------~iiHrDlkp  130 (331)
T cd05624          72 DENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYI-AEMVLAIHSIHQL------HYVHRDIKP  130 (331)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeccCch
Confidence            567899999987 899999998876 89999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=97.18  E-value=0.00032  Score=60.29  Aligned_cols=57  Identities=11%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.+++...+.|+...+..++ .||+..|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  129 (333)
T cd05600          72 DDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYM-AEMFEAVDALHEL------GYIHRDLKP  129 (333)
T ss_pred             cCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCCH
Confidence            456899999998 88999999866689999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=97.17  E-value=0.00029  Score=60.48  Aligned_cols=57  Identities=12%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|||||.+ |.+|...+..+++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivHrDlkp  124 (316)
T cd05620          67 TKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYA-AEIVCGLQFLHSK------GIIYRDLKL  124 (316)
T ss_pred             eCCEEEEEECCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            456889999988 57898888766689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.17  E-value=0.00026  Score=59.24  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=49.4

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+. .+|..+...++ +++...++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        88 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~iiH~dlkp  145 (274)
T cd05076          88 GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVA-QQLASALSYLEDK------NLVHGNVCA  145 (274)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHcC------CccCCCCCc
Confidence            468999999885 67888877655 89999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=97.16  E-value=0.00032  Score=60.35  Aligned_cols=57  Identities=9%  Similarity=0.009  Sum_probs=51.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.......+.|+...++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~Ey~~~g~L~~~i~~~~~l~~~~~~~i~-~qi~~al~~lH~~------~ivHrDikp  129 (323)
T cd05615          72 TVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYA-AEISVGLFFLHRR------GIIYRDLKL  129 (323)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            346789999998 78999888766699999999999 7999999999988      999999987

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=97.15  E-value=0.00027  Score=61.02  Aligned_cols=57  Identities=12%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|..++...+ +|+..++..++ .|++..|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  130 (331)
T cd05597          72 DENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYL-AEMVLAIDSVHQL------GYVHRDIKP  130 (331)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEECCCCH
Confidence            456889999987 899999998766 89999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=97.15  E-value=0.00031  Score=60.27  Aligned_cols=57  Identities=9%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|...+...++|+...+..++ .||++.|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivH~dlkp  129 (324)
T cd05587          72 TMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYA-AEIAIGLFFLHSK------GIIYRDLKL  129 (324)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            456789999998 78998888766689999999999 6999999999998      999999997

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PHA03209 serine/threonine kinase US3; Provisional

Probab=97.14  E-value=0.00031  Score=61.51  Aligned_cols=56  Identities=14%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.+|||+.++.+|...+..++ .|+...++.|+ .|++..|.+.|..      +.+||||||
T Consensus       129 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~-~qi~~aL~~LH~~------~ivHrDlkp  185 (357)
T PHA03209        129 GAITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIE-KQILEGLRYLHAQ------RIIHRDVKT  185 (357)
T ss_pred             CCeeEEEEEccCCcHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            46789999999999999988777 89999999999 7999999999998      999999987

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=97.14  E-value=0.00032  Score=61.36  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.+++..++.|+...+..++ .||+..|.+.|+.      +.+||||+|
T Consensus       102 ~~~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDLkp  159 (340)
T PTZ00426        102 DESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYA-AQIVLIFEYLQSL------NIVYRDLKP  159 (340)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEccCCCH
Confidence            446889999988 78999998876699999999999 7999999999999      999999987

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=97.13  E-value=0.00032  Score=61.44  Aligned_cols=57  Identities=11%  Similarity=0.032  Sum_probs=51.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|..++...+.|+...+..++ .||+..|.+.|+.      +++||||||
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivHrDlkp  129 (376)
T cd05598          72 DKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYI-AELTCAIESVHKM------GFIHRDIKP  129 (376)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeCCCCH
Confidence            456889999998 89999999876689999999998 6999999999998      999999987

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=97.12  E-value=0.00034  Score=61.67  Aligned_cols=57  Identities=11%  Similarity=0.046  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|..++...+.|+...+..++ .|++..|.+.|..      +++||||||
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~-~qi~~aL~~LH~~------givHrDlKp  129 (381)
T cd05626          72 DKDNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYI-AELTLAIESVHKM------GFIHRDIKP  129 (381)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecCCcH
Confidence            457899999998 78999998866689999999999 6999999999998      999999997

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=97.12  E-value=0.00036  Score=59.52  Aligned_cols=57  Identities=12%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+..+++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        64 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~HrDlkp  121 (312)
T cd05585          64 SPEKLYLVLAFINGGELFHHLQREGRFDLSRARFYT-AELLCALENLHKF------NVIYRDLKP  121 (312)
T ss_pred             cCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEeCCCCH
Confidence            456889999988 68999888876699999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=97.12  E-value=0.00014  Score=59.47  Aligned_cols=86  Identities=9%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             eEEeecccccc-HHHHHHHcCCCCcchhhcccchhHHHHHHHHH-HhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSD-LQKLLDEHKEFSLKNTLTITDFPILKVMSMEY-CYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQA   90 (186)
Q Consensus        13 rfmVmerlG~d-L~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H-~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~   90 (186)
                      .+||||.++.+ +.......+.|+..+++.++ .|++..|.+.| ..      +.+||||+|--..    +      .+.
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~-~qi~~~L~~l~H~~------giiHrDlkP~NIl----i------~~~  154 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKDAPLSESKARELY-LQVIQIMRILYQDC------RLVHADLSEYNLL----Y------HDG  154 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhcCCCCHHHHHHHH-HHHHHHHHHHHHhC------CcccCCCCHHHEE----E------ECC
Confidence            48999999853 33322223489999999999 79999999995 55      9999999982110    0      011


Q ss_pred             HHHHhhHhHHHHhhhhhhhhHHHHH
Q psy13596         91 LVDHLNVGVAQAYLNQKKLDAEAKQ  115 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~Nqk~ie~E~K~  115 (186)
                      -+..+|||.+....|+...+--.++
T Consensus       155 ~v~LiDFG~a~~~~~~~~~~~~~~d  179 (190)
T cd05147         155 KLYIIDVSQSVEHDHPHALEFLRMD  179 (190)
T ss_pred             cEEEEEccccccCCCcCHHHHHHHH
Confidence            3678999999877777666643444

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=97.12  E-value=0.00033  Score=60.23  Aligned_cols=57  Identities=14%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|+|||.+ |.+|...+..+++|+..++..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~-~qi~~al~~LH~~------~ivHrdikp  124 (316)
T cd05619          67 TKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYA-AEIICGLQFLHSK------GIVYRDLKL  124 (316)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEeCCCCH
Confidence            456789999988 78999999877789999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.11  E-value=0.00034  Score=57.88  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=50.7

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.+||||.++ .+|.++...++ .++...++.++ .+++..|.+.|+.      +.+|+||+|
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~-~~i~~al~~lH~~------~iiH~dikp  135 (266)
T cd05064          77 RGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGML-PGLASGMKYLSEM------GYVHKGLAA  135 (266)
T ss_pred             cCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeeccccH
Confidence            3467899999995 58998888766 89999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=97.11  E-value=0.00037  Score=59.84  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|...+...++|+...+..++ .|+++.|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~-~qil~al~~LH~~------~ivHrDlkp  124 (330)
T cd05586          67 TDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYI-AELVLALEHLHKY------DIVYRDLKP  124 (330)
T ss_pred             cCCeEEEEEcCCCCChHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeccCCH
Confidence            456789999987 67888887766689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=97.10  E-value=0.00036  Score=60.81  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.+++...+.|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~-~qi~~~L~~lH~~------givHrDLkp  129 (360)
T cd05627          72 DKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYI-AETVLAIDAIHQL------GFIHRDIKP  129 (360)
T ss_pred             cCCEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEccCCCH
Confidence            456889999998 78999998866689999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=97.10  E-value=0.00043  Score=57.73  Aligned_cols=56  Identities=13%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.++.+|..++...+ .|+..+++.++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        91 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~-~qi~~al~~lH~~------~i~H~dl~p  147 (310)
T cd07865          91 KGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVM-KMLLNGLYYIHRN------KILHRDMKA  147 (310)
T ss_pred             CceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            35679999999999999998777 89999999999 7999999999998      899999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=97.09  E-value=0.00037  Score=60.98  Aligned_cols=57  Identities=12%  Similarity=0.101  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|..+...++.|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~-~qi~~aL~~lH~~------givHrDlKp  129 (363)
T cd05628          72 DKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYI-AETVLAIDSIHQL------GFIHRDIKP  129 (363)
T ss_pred             cCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEecCCCH
Confidence            456789999998 78999998876789999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=97.06  E-value=0.00046  Score=59.11  Aligned_cols=57  Identities=14%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|..++..+. .|+...+..+. .|++..|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~-~qi~~aL~~lH~~------~i~H~Dlkp  130 (330)
T cd05601          72 DKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYL-AELVLAIHSVHQM------GYVHRDIKP  130 (330)
T ss_pred             cCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEcccCch
Confidence            346789999998 899999999885 89999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0661|consensus

Probab=97.06  E-value=0.00025  Score=66.84  Aligned_cols=79  Identities=11%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             eeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQA   90 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~   90 (186)
                      .=|+|||.+-++|-.|++..+ -||++++..|. .|||+.|..+|.+      ++-|||+||--..=.         +..
T Consensus        84 ~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim-~QilqGL~hiHk~------GfFHRDlKPENiLi~---------~~~  147 (538)
T KOG0661|consen   84 ILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIM-YQILQGLAHIHKH------GFFHRDLKPENILIS---------GND  147 (538)
T ss_pred             eEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHH-HHHHHHHHHHHhc------CcccccCChhheEec---------ccc
Confidence            568999999999999999888 79999999999 7999999999999      999999998321100         044


Q ss_pred             HHHHhhHhHHHHhhhh
Q psy13596         91 LVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~Nq  106 (186)
                      ++..-|||++.--.+.
T Consensus       148 ~iKiaDFGLARev~Sk  163 (538)
T KOG0661|consen  148 VIKIADFGLAREVRSK  163 (538)
T ss_pred             eeEecccccccccccC
Confidence            6677789988654433

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=97.06  E-value=0.00041  Score=59.59  Aligned_cols=57  Identities=12%  Similarity=0.051  Sum_probs=50.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|+|||.+ |.+|...+..++.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        66 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~ivHrDlkp  123 (323)
T cd05571          66 THDRLCFVMEYANGGELFFHLSRERVFSEDRARFYG-AEIVSALGYLHSC------DVVYRDLKL  123 (323)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEeCCCCH
Confidence            456889999988 57898888766689999999999 7999999999999      999999997

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=97.05  E-value=0.00041  Score=59.83  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+++..++ .|+..++..++ .||+..|.+.|+.      +.+||||||
T Consensus        72 ~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~-~qi~~al~~lH~~------~iiHrDlkp  130 (332)
T cd05623          72 DENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYL-AEMVIAIDSVHQL------HYVHRDIKP  130 (332)
T ss_pred             cCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            456789999986 789999998776 89999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=97.04  E-value=0.00041  Score=57.93  Aligned_cols=56  Identities=9%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+|.+|..++...+ .|+...++.++ .|+++.|.+.|..      +.+|++|+|
T Consensus        74 ~~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~i~H~dl~p  130 (298)
T cd07841          74 KSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYM-LMTLRGLEYLHSN------WILHRDLKP  130 (298)
T ss_pred             CCEEEEEEcccCCCHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecCCCh
Confidence            56899999999999999998777 89999999999 6999999999999      899999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.04  E-value=0.0005  Score=57.98  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+..++.|+...+..++ .||++.|.+.|+.      +.+|+||+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dlkp  129 (291)
T cd05612          72 DQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYA-SEIVCALEYLHSK------EIVYRDLKP  129 (291)
T ss_pred             cCCeEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCH
Confidence            456899999976 67899988866689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=97.04  E-value=0.0005  Score=55.87  Aligned_cols=57  Identities=11%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++...+ .++..+++.+. .||++.|.+.|+.      +.+|++|+|
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~i~H~dl~p  122 (252)
T cd05084          64 QKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMV-ENAAAGMEYLESK------HCIHRDLAA  122 (252)
T ss_pred             CCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------Cccccccch
Confidence            346789999987 689999887766 79999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=97.04  E-value=0.00056  Score=57.45  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.++.+|...+..++ .++...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        75 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivH~dlkp  131 (288)
T cd07871          75 ERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFM-FQLLRGLSYCHKR------KILHRDLKP  131 (288)
T ss_pred             CCeEEEEEeCCCcCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            35678999999999999998888 79999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.02  E-value=0.0005  Score=56.63  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+...+ .|+..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~-~~i~~~l~~lH~~------~i~h~dlkp  134 (267)
T cd05066          76 KSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGML-RGIASGMKYLSDM------GYVHRDLAA  134 (267)
T ss_pred             cCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeehhhch
Confidence            446889999999 789999998776 89999999999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.02  E-value=0.00039  Score=57.10  Aligned_cols=56  Identities=7%  Similarity=0.027  Sum_probs=50.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.+||||.+ |.+|..++..++ .++...++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        71 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~iiH~dlkp  128 (258)
T cd05078          71 GDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVA-KQLAWALHFLEDK------GLTHGNVCA  128 (258)
T ss_pred             CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCcc
Confidence            35688999988 568999988777 79999999999 7999999999998      999999997

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=97.02  E-value=0.00052  Score=56.54  Aligned_cols=57  Identities=12%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+|.+|.+++...+ .|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  127 (286)
T cd07832          70 HGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYM-RMLLKGVAYMHAN------GIMHRDLKP  127 (286)
T ss_pred             cCCeeEEEecccCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCcCH
Confidence            356889999999999999998766 79999999999 6999999999998      899999876

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=97.01  E-value=0.00049  Score=59.08  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=50.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|..++...+.|+...+..++ .||+..|.+.|+.      +.+||||||
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------giiHrDlkp  124 (325)
T cd05602          67 TADKLYFVLDYINGGELFYHLQRERCFLEPRARFYA-AEIASALGYLHSL------NIVYRDLKP  124 (325)
T ss_pred             cCCeEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            456789999999 56898888765589999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.00  E-value=0.00055  Score=56.22  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             cccccCCCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          3 GQQEHNGNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         3 G~~~~~~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |.....+..+.++|||.+ |.+|.+++..+. +++..+++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        73 ~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~l~~aL~~lH~~------~i~H~dl~p  137 (284)
T cd05038          73 GVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFS-SQICKGMDYLGSQ------RYIHRDLAA  137 (284)
T ss_pred             eeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            344455677899999988 789999998777 89999999999 6999999999988      999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=96.99  E-value=0.00054  Score=57.90  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.|+|||.++.+|..++..+. .|+...+..++ .||+..|.+.|+.      +.+|++|+|
T Consensus        80 ~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dl~p  136 (309)
T cd07845          80 LDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLM-LQLLRGLQYLHEN------FIIHRDLKV  136 (309)
T ss_pred             CCeEEEEEecCCCCHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            35679999999999999999876 89999999999 7999999999999      899999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=96.99  E-value=0.00047  Score=56.84  Aligned_cols=56  Identities=16%  Similarity=0.198  Sum_probs=50.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|.+++..+. .++..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        66 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlkp  123 (257)
T cd05115          66 AEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELM-HQVSMGMKYLEGK------NFVHRDLAA  123 (257)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhc------Ceeecccch
Confidence            45789999988 689999888666 89999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=96.99  E-value=0.00045  Score=59.31  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=50.2

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....+.|||||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.     ++.+||||+|
T Consensus        65 ~~~~~~~lv~E~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~aL~~lH~~-----~~ivHrDikp  124 (325)
T cd05594          65 QTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYG-AEIVSALDYLHSE-----KNVVYRDLKL  124 (325)
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhc-----CCEEecCCCC
Confidence            3456889999998 57887777655589999999999 7999999999985     4999999997

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>PHA03207 serine/threonine kinase US3; Provisional

Probab=96.96  E-value=0.00057  Score=60.72  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-+|||+.++.+|...+..++.|+...++.++ .|++..|.+.|..      +.+||||||
T Consensus       157 ~~~~~~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~-~ql~~aL~~LH~~------givHrDlkp  213 (392)
T PHA03207        157 WKSTVCMVMPKYKCDLFTYVDRSGPLPLEQAITIQ-RRLLEALAYLHGR------GIIHRDVKT  213 (392)
T ss_pred             eCCEEEEEehhcCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCCH
Confidence            34678999999999999988655589999999999 7999999999998      999999987

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=96.96  E-value=0.00058  Score=58.91  Aligned_cols=57  Identities=12%  Similarity=0.078  Sum_probs=50.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|...+...++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~g~L~~~~~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  124 (329)
T cd05588          67 TESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYS-AEISLALNFLHER------GIIYRDLKL  124 (329)
T ss_pred             cCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            346789999988 67998887766699999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=96.96  E-value=0.00066  Score=56.86  Aligned_cols=57  Identities=11%  Similarity=0.117  Sum_probs=52.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+++...+.|+..++..++ .|++..|.+.|..      +.+|++|+|
T Consensus        72 ~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~-~qil~~l~~lH~~------~i~H~dl~p  129 (290)
T cd05580          72 DDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYA-AQVVLALEYLHSL------DIVYRDLKP  129 (290)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEecCCCCH
Confidence            456789999999 99999999877799999999999 7999999999998      999999986

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=96.95  E-value=0.0006  Score=59.90  Aligned_cols=57  Identities=11%  Similarity=0.032  Sum_probs=50.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|.+++..++.|+...+..++ .|++..|.+.|+.      +++||||||
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~-~qi~~al~~lH~~------~ivHrDlKp  129 (382)
T cd05625          72 DKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYI-AELTCAVESVHKM------GFIHRDIKP  129 (382)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            456889999998 67999998876689999999999 6999999999998      999999997

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=96.95  E-value=0.0007  Score=56.31  Aligned_cols=57  Identities=12%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-+||||.++.+|...+....  .++..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        80 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~-~qi~~aL~~lH~~------~iiH~dlkp  138 (290)
T cd07862          80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMM-FQLLRGLDFLHSH------RVVHRDLKP  138 (290)
T ss_pred             CCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeCCCCH
Confidence            345688999999999999998654  59999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=96.94  E-value=0.00055  Score=56.74  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=51.8

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..+.++|||.+ |.+|.+++..++ .++..+++.++ .|+++.|.+.|..      +.+|++|+|
T Consensus        77 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~-~~l~~aL~~LH~~------~i~H~dlkp  136 (284)
T cd05081          77 AGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYA-SQICKGMEYLGSK------RYVHRDLAT  136 (284)
T ss_pred             CCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHH-HHHHHHHHHHHHC------CceeccCCH
Confidence            4456789999988 799999998776 89999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PHA03212 serine/threonine kinase US3; Provisional

Probab=96.94  E-value=0.00067  Score=60.83  Aligned_cols=56  Identities=16%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++||+.++.+|...+...+.++...++.++ .|++..|.+.|+.      +.+||||||
T Consensus       155 ~~~~~lv~e~~~~~L~~~l~~~~~l~~~~~~~i~-~qi~~aL~ylH~~------~IvHrDiKP  210 (391)
T PHA03212        155 NKFTCLILPRYKTDLYCYLAAKRNIAICDILAIE-RSVLRAIQYLHEN------RIIHRDIKA  210 (391)
T ss_pred             CCeeEEEEecCCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCh
Confidence            4678999999999998888765589999999999 7999999999998      999999997

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.92  E-value=0.00052  Score=66.08  Aligned_cols=57  Identities=9%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.++....+.|+...++.++ .|++..|.+.|..      +++||||||
T Consensus        75 ~~~~~~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~-~qil~aL~yLH~~------gIiHrDLKP  132 (669)
T cd05610          75 SANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYI-SEVALALDYLHRH------GIIHRDLKP  132 (669)
T ss_pred             ECCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CEEeCCccH
Confidence            456899999988 89999998866689999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.92  E-value=0.0007  Score=58.14  Aligned_cols=57  Identities=7%  Similarity=0.081  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.|++|+.+|.+|.+.+..+..|+..++..++ .|+++.|.+.|+.      +.+|+||+|
T Consensus        77 ~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------givH~dlkp  133 (332)
T cd07857          77 NFNELYLYEELMEADLHQIIRSGQPLTDAHFQSFI-YQILCGLKYIHSA------NVLHRDLKP  133 (332)
T ss_pred             cCCcEEEEEecccCCHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            34578999999999999999765589999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=96.91  E-value=0.00069  Score=58.10  Aligned_cols=57  Identities=9%  Similarity=0.023  Sum_probs=50.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|+|||.+ |.+|...+...+.|+..+++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDlkp  129 (323)
T cd05616          72 TMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYA-AEIAIGLFFLHSK------GIIYRDLKL  129 (323)
T ss_pred             cCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEEecCCCH
Confidence            346789999988 67998887766689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=96.90  E-value=0.00078  Score=55.21  Aligned_cols=56  Identities=14%  Similarity=0.096  Sum_probs=50.7

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.++ .+|.+++...+.|+..+++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlkp  134 (267)
T cd06645          78 RDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVS-RETLQGLYYLHSK------GKMHRDIKG  134 (267)
T ss_pred             CCEEEEEEeccCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            467899999995 7999998876799999999999 7999999999999      999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=96.90  E-value=0.00075  Score=55.49  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             ccccCCCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          4 QQEHNGNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         4 ~~~~~~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..+...+.++|||.++.+|...+.... .|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        66 ~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~-~qi~~~L~~LH~~------~i~H~dl~p  128 (282)
T cd07831          66 VLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYM-YQLLKSLDHMHRN------GIFHRDIKP  128 (282)
T ss_pred             EEecCCCCcEEEEEecCCccHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CceecccCH
Confidence            33433346889999999989888887665 79999999999 7999999999998      999999886

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=96.89  E-value=0.00075  Score=58.10  Aligned_cols=57  Identities=12%  Similarity=0.049  Sum_probs=50.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        66 ~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivH~Dlkp  123 (323)
T cd05595          66 THDRLCFVMEYANGGELFFHLSRERVFTEERARFYG-AEIVSALEYLHSR------DVVYRDIKL  123 (323)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            346789999988 57888877765689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=96.88  E-value=0.00074  Score=58.03  Aligned_cols=57  Identities=11%  Similarity=0.052  Sum_probs=50.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|...+..+++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~iv~Ey~~~g~L~~~i~~~~~l~~~~~~~~~-~ql~~~L~~lH~~------~ivH~dlkp  124 (320)
T cd05590          67 TPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYA-AEITSALMFLHDK------GIIYRDLKL  124 (320)
T ss_pred             cCCEEEEEEcCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeCCCCH
Confidence            456789999988 57998887766699999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=96.86  E-value=0.0008  Score=56.03  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++-++|||.+ |.+|..++..++.|+...++.++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dl~p  137 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKII-RQLVEALNDLHKH------NIIHNDIKL  137 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeCCCCH
Confidence            45889999998 79999999876689999999999 6999999999999      899999987

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=96.85  E-value=0.00083  Score=56.89  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.++.+|...+..++ .++...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        76 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~aL~~lH~~------~ivH~dlkp  132 (309)
T cd07872          76 DKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFL-YQILRGLAYCHRR------KVLHRDLKP  132 (309)
T ss_pred             CCeEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            45789999999999999988877 79999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=96.84  E-value=0.00096  Score=55.51  Aligned_cols=57  Identities=12%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.++.+|..++..++ .|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        74 ~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~-~ql~~al~~lH~~------~i~H~dl~p  131 (291)
T cd07844          74 TKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFL-FQLLRGLAYCHQR------RVLHRDLKP  131 (291)
T ss_pred             cCCeEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecccCCH
Confidence            446889999999999999988777 79999999999 6999999999988      999999987

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=96.84  E-value=0.00093  Score=57.23  Aligned_cols=56  Identities=9%  Similarity=0.075  Sum_probs=49.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.+|...+...++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        68 ~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDikp  124 (321)
T cd05591          68 KDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYA-AEVTLALMFLHRH------GVIYRDLKL  124 (321)
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            45679999998 57998888766689999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=96.83  E-value=0.00096  Score=55.96  Aligned_cols=57  Identities=11%  Similarity=0.030  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|...+... + .|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  130 (285)
T cd05605          71 TKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYA-AEITCGLEDLHRE------RIVYRDLKP  130 (285)
T ss_pred             CCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcEecCCCH
Confidence            446899999998 68898776554 3 79999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=96.81  E-value=0.00086  Score=57.49  Aligned_cols=57  Identities=9%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+..++.|+...+..++ .|+++.|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------givH~dikp  124 (323)
T cd05575          67 TADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYA-AEIASALGYLHSL------NIIYRDLKP  124 (323)
T ss_pred             eCCEEEEEEcCCCCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeCCCCH
Confidence            446789999998 57898888766689999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=96.81  E-value=0.00077  Score=57.95  Aligned_cols=57  Identities=7%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++.+|..++...+.|+..++..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        79 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~-~qi~~aL~~LH~~------~ivH~dlkp  135 (334)
T cd07855          79 DFKDVYVVMDLMESDLHHIIHSDQPLTEEHIRYFL-YQLLRGLKYIHSA------NVIHRDLKP  135 (334)
T ss_pred             CCceEEEEEehhhhhHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            34688999999999999998755589999999999 7999999999998      899999986

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=96.81  E-value=0.0009  Score=57.85  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|...+...++++...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~E~~~~~~L~~~~~~~~~l~~~~~~~i~-~qi~~~l~~lH~~------~ivH~Dikp  124 (329)
T cd05618          67 TESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYS-AEISLALNYLHER------GIIYRDLKL  124 (329)
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeCCCCH
Confidence            346889999987 57888777765689999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=96.80  E-value=0.00092  Score=57.78  Aligned_cols=57  Identities=14%  Similarity=0.052  Sum_probs=49.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|+|||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        66 ~~~~~~lv~Ey~~~g~L~~~l~~~~~l~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDikp  123 (328)
T cd05593          66 TKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYG-AEIVSALDYLHSG------KIVYRDLKL  123 (328)
T ss_pred             cCCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEecccCH
Confidence            456789999998 56887777655589999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=96.80  E-value=0.00081  Score=57.90  Aligned_cols=54  Identities=9%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..-++||+.+|.+|..++. +++|+...+..++ .||+..|.+.|+.      +.+||||+|
T Consensus        93 ~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~i~-~qi~~aL~~LH~~------~ivHrdikp  146 (343)
T cd07878          93 NEVYLVTNLMGADLNNIVK-CQKLSDEHVQFLI-YQLLRGLKYIHSA------GIIHRDLKP  146 (343)
T ss_pred             CcEEEEeecCCCCHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecccCCh
Confidence            3468999999999999876 4589999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=96.79  E-value=0.00092  Score=55.80  Aligned_cols=56  Identities=11%  Similarity=0.122  Sum_probs=51.9

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.++.+|.+++..+. .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        78 ~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~-~qi~~aL~~LH~~------~i~H~dl~p  134 (293)
T cd07843          78 LDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLM-LQLLSGVAHLHDN------WILHRDLKT  134 (293)
T ss_pred             CCcEEEEehhcCcCHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeccCCH
Confidence            37899999999999999998877 79999999999 7999999999988      899999987

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=96.79  E-value=0.0011  Score=53.65  Aligned_cols=57  Identities=14%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+...+ .++..+++.++ .+++..+.+.|..      +.+|++|+|
T Consensus        63 ~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~lH~~------~i~h~di~p  121 (251)
T cd05041          63 QKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMS-LDAAAGMEYLESK------NCIHRDLAA  121 (251)
T ss_pred             cCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEehhhcCc
Confidence            446789999998 799999987766 89999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=96.78  E-value=0.00099  Score=56.36  Aligned_cols=58  Identities=9%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             CCCeeeEEeeccccccHHHHHHHc--------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFGSDLQKLLDEH--------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG~dL~~l~~~~--------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....+-|+|||.++.+|..++...        . .|+..++..++ .|++..|.+.|+.      +.+||||||
T Consensus        70 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~al~~LH~~------~ivHrDlkp  136 (317)
T cd07868          70 HADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLL-YQILDGIHYLHAN------WVLHRDLKP  136 (317)
T ss_pred             CCCcEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHH-HHHHHHHHHHHhC------CEEcCCCCH
Confidence            345678999999999999988643        1 48888899999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=96.78  E-value=0.00092  Score=53.67  Aligned_cols=56  Identities=23%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc--------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH--------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~--------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|.+.+...        + .|+...+..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        68 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~al~~lH~~------~i~H~di~p  133 (262)
T cd00192          68 EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFA-IQIAKGMEYLASK------KFVHRDLAA  133 (262)
T ss_pred             CCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHH-HHHHHHHHHHHcC------CcccCccCc
Confidence            56789999999 99999999886        5 89999999999 6999999999999      999999987

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=96.78  E-value=0.0011  Score=57.23  Aligned_cols=57  Identities=7%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|.+.+...++|+...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        89 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivH~dlkp  146 (329)
T PTZ00263         89 DENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYH-AELVLAFEYLHSK------DIIYRDLKP  146 (329)
T ss_pred             cCCEEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCH
Confidence            456889999975 78999988876699999999999 7999999999999      999999987

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=96.77  E-value=0.0012  Score=56.68  Aligned_cols=57  Identities=14%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        76 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivHrDlkp  133 (332)
T cd05614          76 TEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYS-GEIILALEHLHKL------GIVYRDIKL  133 (332)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcEecCCCH
Confidence            446789999998 56888887755589999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=96.77  E-value=0.0011  Score=56.85  Aligned_cols=57  Identities=11%  Similarity=0.039  Sum_probs=50.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|...+..+++|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~-~qi~~~l~~LH~~------~ivH~dlkp  124 (318)
T cd05570          67 TKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYA-AEIVLGLQFLHER------GIIYRDLKL  124 (318)
T ss_pred             cCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEccCCCH
Confidence            345789999998 78998888766699999999999 7999999999988      999999987

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=96.76  E-value=0.0011  Score=56.72  Aligned_cols=57  Identities=7%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~ivH~Dlkp  124 (321)
T cd05603          67 TAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYA-AEVASAIGYLHSL------NIIYRDLKP  124 (321)
T ss_pred             cCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeEeccCCH
Confidence            456789999998 57888777755589999999999 7999999999988      999999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=96.76  E-value=0.0011  Score=56.59  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|.+.+.....|+...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        69 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dlkp  126 (318)
T cd05582          69 TEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYL-AELALALDHLHSL------GIIYRDLKP  126 (318)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEecCCCCH
Confidence            346789999988 68998887655589999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=96.75  E-value=0.0011  Score=55.86  Aligned_cols=56  Identities=13%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.++.+|...+..++ .++...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        76 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~-~qi~~aL~~lH~~------~i~H~dlkp  132 (301)
T cd07873          76 EKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFL-FQLLRGLNYCHRR------KVLHRDLKP  132 (301)
T ss_pred             CCeEEEEEeccccCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeCCCCCH
Confidence            46789999999999999998777 89999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=96.75  E-value=0.0012  Score=54.79  Aligned_cols=57  Identities=11%  Similarity=0.151  Sum_probs=50.8

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+..++.+.+...+ .++...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~i~H~dlkp  128 (287)
T cd07848          71 RRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYI-YQLIKAIHWCHKN------DIVHRDIKP  128 (287)
T ss_pred             cCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            456789999999888888777666 89999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=96.75  E-value=0.0013  Score=53.68  Aligned_cols=57  Identities=9%  Similarity=0.052  Sum_probs=52.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +.++.|+||+.+ |.+|.+++...+.|+..+++.++ .|+++.|.+.|..      +..|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~-~ql~~~l~~Lh~~------~~~H~dl~~  130 (280)
T cd05581          73 DEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYA-AEILLALEYLHSK------GIIHRDLKP  130 (280)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCH
Confidence            456889999999 99999999876699999999999 7999999999988      999999876

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=96.73  E-value=0.0011  Score=53.73  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.+||||.+ |.+|..++...+ .|+...++.++ .|++..|.+.|..      +.+|+||+|
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~dlkp  129 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVA-KQLASALHYLEDK------KLVHGNVCG  129 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhhC------CeecccCcc
Confidence            4679999998 478999888777 89999999999 6999999999988      999999997

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=96.72  E-value=0.0012  Score=54.31  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.|+|||.+ |.+|.+++..+. .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  128 (256)
T cd05113          71 QRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMC-KDVCEGMAYLESK------QFIHRDLAA  128 (256)
T ss_pred             CCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccccCc
Confidence            45679999987 578999888776 89999999999 7999999999998      999999986

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=96.72  E-value=0.0012  Score=56.57  Aligned_cols=57  Identities=11%  Similarity=0.087  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~al~~lH~~------givH~Dlkp  124 (325)
T cd05604          67 TTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYA-AEIASALGYLHSI------NIVYRDLKP  124 (325)
T ss_pred             cCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCH
Confidence            456789999988 57888777655589999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=96.72  E-value=0.0012  Score=54.51  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.++.+|.+.+..++ +++...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~al~~LH~~------~i~H~dl~~  127 (284)
T cd07839          70 SDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFM-FQLLKGLAFCHSH------NVLHRDLKP  127 (284)
T ss_pred             cCCceEEEEecCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEecCCCCH
Confidence            346789999999999999988766 89999999999 7999999999998      999999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=96.71  E-value=0.0015  Score=52.63  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|..++...+.++..++..++ .|++..|.+.|..      +.+|++|+|
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~-~qi~~~L~~lH~~------~i~H~di~~  121 (265)
T cd05579          64 GKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYI-AEIVLALEYLHSN------GIIHRDLKP  121 (265)
T ss_pred             cCcEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHc------CeecCCCCH
Confidence            457889999999 68999999876689999999999 6999999999988      999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=96.70  E-value=0.001  Score=55.18  Aligned_cols=57  Identities=5%  Similarity=0.019  Sum_probs=48.2

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...++|||||.++ .+|..++...+ .|+...++.++ .|+++.|.+.|+.      +.+||||+|
T Consensus        75 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~ivH~dlkp  133 (262)
T cd05077          75 RDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVA-KQLASALSYLEDK------DLVHGNVCT  133 (262)
T ss_pred             cCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHhhhC------CeECCCCCc
Confidence            4467899999986 45666655555 79999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=96.70  E-value=0.0012  Score=58.31  Aligned_cols=56  Identities=13%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++. +++|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus       114 ~~~~~~lv~Ey~~gg~L~~~l~-~~~l~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDLkp  170 (370)
T cd05596         114 DDKYLYMVMEYMPGGDLVNLMS-NYDIPEKWARFYT-AEVVLALDAIHSM------GFIHRDVKP  170 (370)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHH-hcCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            457899999998 789999875 2379999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=96.69  E-value=0.0014  Score=54.25  Aligned_cols=56  Identities=11%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.++.+|..++....  .|+...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        79 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivH~dikp  136 (288)
T cd07863          79 ETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLM-RQFLRGLDFLHAN------CIVHRDLKP  136 (288)
T ss_pred             CceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            45678999999999999888754  69999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=96.69  E-value=0.0014  Score=53.49  Aligned_cols=57  Identities=7%  Similarity=0.036  Sum_probs=49.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.+.+...+.++...+..++ .|+++.|.+.|+.      +.+|+||+|
T Consensus        56 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~ql~~~l~~lH~~------~i~H~dlkp  113 (237)
T cd05576          56 SEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWA-AEMVVALDALHRE------GIVCRDLNP  113 (237)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            357889999988 47898888755589999999999 6999999999988      999999987

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=96.68  E-value=0.0016  Score=54.96  Aligned_cols=57  Identities=11%  Similarity=0.071  Sum_probs=51.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|..++..++.++...+..++ .++++.|.+.|+.      +.+|++++|
T Consensus        72 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  129 (305)
T cd05609          72 TKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYF-AETVLALEYLHNY------GIVHRDLKP  129 (305)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCch
Confidence            456889999988 68999999876689999999999 6999999999988      999999887

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=96.68  E-value=0.0011  Score=58.70  Aligned_cols=56  Identities=13%  Similarity=0.199  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...|.|+|||.+ |.+|..++.. .+|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus       114 ~~~~~~lv~Ey~~gg~L~~~~~~-~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDLkp  170 (371)
T cd05622         114 DDRYLYMVMEYMPGGDLVNLMSN-YDVPEKWARFYT-AEVVLALDAIHSM------GFIHRDVKP  170 (371)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHh-cCCCHHHHHHHH-HHHHHHHHHHHHC------CEEeCCCCH
Confidence            457899999998 7899998863 379999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=96.68  E-value=0.0016  Score=59.36  Aligned_cols=80  Identities=8%  Similarity=0.126  Sum_probs=59.2

Q ss_pred             CeeeEEeeccccccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHH
Q psy13596         10 NSYRFIIISKFGSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAAN   85 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~   85 (186)
                      ..|-++|||.++.+|.+++..   .+ .|+..++..++ .||+..|.+.|+.      +.+||||||.-..    +..  
T Consensus       139 ~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~qi~~gL~yLH~~------~IiHrDLKp~NIL----l~~--  205 (440)
T PTZ00036        139 NIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYS-YQLCRALAYIHSK------FICHRDLKPQNLL----IDP--  205 (440)
T ss_pred             ceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEecCCcCHHHEE----EcC--
Confidence            346779999999998877653   34 79999999999 7999999999998      9999999972110    000  


Q ss_pred             HHHHHHHHHhhHhHHHHhh
Q psy13596         86 DLTQALVDHLNVGVAQAYL  104 (186)
Q Consensus        86 ~l~~~Lv~~Ln~gvs~~y~  104 (186)
                        ....+...|+|++..+.
T Consensus       206 --~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        206 --NTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             --CCCceeeeccccchhcc
Confidence              01235567888887553

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=96.67  E-value=0.0014  Score=53.88  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++ .+|..++..++ .|+..+++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~-~~l~~al~~lH~~------g~~H~dl~p  134 (269)
T cd05065          76 KSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGML-RGIAAGMKYLSEM------NYVHRDLAA  134 (269)
T ss_pred             CCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeecccCh
Confidence            4457899999985 68999988766 89999999999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=96.66  E-value=0.0013  Score=54.93  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+...+  .++...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        64 ~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivH~dikp  123 (277)
T cd05607          64 SKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYS-AQITCGILHLHSM------DIVYRDMKP  123 (277)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHH-HHHHHHHHHHHHC------CEEEccCCh
Confidence            456889999998 789988776544  69999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=96.66  E-value=0.0013  Score=54.57  Aligned_cols=57  Identities=21%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.++....+       .|+.+.++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        80 ~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~LH~~------~ivH~dlkp  144 (277)
T cd05036          80 ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCA-RDVAKGCKYLEEN------HFIHRDIAA  144 (277)
T ss_pred             cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeecccch
Confidence            345678999988 899999987653       48889999999 7999999999998      899999987

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=96.65  E-value=0.0013  Score=58.38  Aligned_cols=57  Identities=12%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....+.|+|||.+ |.+|..++.. .+++...+..++ .|++..|.+.|+.      +.+||||||
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~l~~-~~~~~~~~~~~~-~qil~aL~~LH~~------~IvHrDLKp  170 (370)
T cd05621         113 QDDKYLYMVMEYMPGGDLVNLMSN-YDVPEKWAKFYT-AEVVLALDAIHSM------GLIHRDVKP  170 (370)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHh-cCCCHHHHHHHH-HHHHHHHHHHHHC------CeEecCCCH
Confidence            3567899999998 7899998862 379999999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.65  E-value=0.0012  Score=56.96  Aligned_cols=55  Identities=9%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.||||+.++.+|.+.+..++.|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        82 ~~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~-~qi~~aL~~LH~~------~i~H~dlkp  136 (337)
T cd07858          82 NDVYIVYELMDTDLHQIIRSSQTLSDDHCQYFL-YQLLRGLKYIHSA------NVLHRDLKP  136 (337)
T ss_pred             CcEEEEEeCCCCCHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCCCCH
Confidence            468999999999999998866699999999999 6999999999988      899999886

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=96.64  E-value=0.0018  Score=54.13  Aligned_cols=57  Identities=11%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|......   .+ .|+...++.++ .|+++.|.+.|+.      +.+|+||+|
T Consensus        64 ~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dlkp  125 (280)
T cd05608          64 TKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYT-AQIISGLEHLHQR------RIIYRDLKP  125 (280)
T ss_pred             CCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            446789999988 6889765532   33 69999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=96.63  E-value=0.0011  Score=53.70  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=51.5

Q ss_pred             CeeeEEeeccccc-cHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGS-DLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~-dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++||+.+.. +|..++...+.|+...++.++ .||+..|.+.|+.      +.+|+||+|
T Consensus        70 ~~~~~~v~~~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~~L~~Lh~~------~i~H~dikp  126 (260)
T PF00069_consen   70 DNYLYIVMEYCPGGSLQDYLQKNKPLSEEEILKIA-YQILEALAYLHSK------GIVHRDIKP  126 (260)
T ss_dssp             SSEEEEEEEEETTEBHHHHHHHHSSBBHHHHHHHH-HHHHHHHHHHHHT------TEEESSBSG
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccccc------ccccccccc
Confidence            4677899999998 999999866699999999999 7999999999999      999999987

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=96.63  E-value=0.0014  Score=53.66  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++|||.++ .+|.+++...+.|+..+++.++ .||+..|.+.|..      +.+|++|+|
T Consensus        67 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~-~qi~~al~~lH~~------~i~H~dlkp  123 (257)
T cd05116          67 AESWMLVMELAELGPLNKFLQKNKHVTEKNITELV-HQVSMGMKYLEET------NFVHRDLAA  123 (257)
T ss_pred             CCCcEEEEecCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeecccch
Confidence            456799999876 6799988755589999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=96.61  E-value=0.0015  Score=54.75  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=48.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-++|||.+ |.+|....... + .|+...++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        71 ~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~iiH~dikp  130 (285)
T cd05631          71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYA-AELCCGLEDLQRE------RIVYRDLKP  130 (285)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEEeCCCCH
Confidence            446789999988 57898766543 4 79999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PHA03211 serine/threonine kinase US3; Provisional

Probab=96.61  E-value=0.0013  Score=60.86  Aligned_cols=56  Identities=14%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.||||+.++.+|...+.... .|+...++.|+ .|++..|.+.|+.      +++||||||
T Consensus       232 ~~~~~lv~e~~~~~L~~~l~~~~~~l~~~~~~~i~-~qi~~aL~yLH~~------gIvHrDLKP  288 (461)
T PHA03211        232 GGLTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVA-RQLLSAIDYIHGE------GIIHRDIKT  288 (461)
T ss_pred             CCEEEEEEEccCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEEECcCCH
Confidence            45789999999999999888766 79999999999 7999999999998      999999997

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=96.59  E-value=0.0015  Score=56.53  Aligned_cols=57  Identities=9%  Similarity=0.114  Sum_probs=50.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+ |.+|.+++..++.++...+..++ .+++..|.+.|+.     .+.+|++|+|
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~~l~~~l~~lH~~-----~~ivH~dlkp  132 (333)
T cd06650          75 DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVS-IAVIKGLTYLREK-----HKIMHRDVKP  132 (333)
T ss_pred             CCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhc-----CCEEecCCCh
Confidence            45889999988 88999999876689999999999 7999999999986     4799999987

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=96.58  E-value=0.0016  Score=53.59  Aligned_cols=56  Identities=13%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|.+++..++ .|+..+++.++ .+|+..|.+.|+.      +.+|++|+|
T Consensus        78 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~~~H~dl~p  135 (270)
T cd05056          78 ENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYS-YQLSTALAYLESK------RFVHRDIAA  135 (270)
T ss_pred             CCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccccCh
Confidence            35678999987 679999998777 79999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=96.58  E-value=0.0015  Score=53.68  Aligned_cols=57  Identities=16%  Similarity=0.066  Sum_probs=50.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|.+.+..+.  .++..+++.++ .||+..|.+.|+.      +.+|+||+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~-~ql~~~l~~lH~~------~i~H~dlkp  132 (263)
T cd05052          73 REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA-TQISSAMEYLEKK------NFIHRDLAA  132 (263)
T ss_pred             CCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeecccCc
Confidence            345678999987 689999988765  69999999999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=96.57  E-value=0.0016  Score=55.82  Aligned_cols=56  Identities=14%  Similarity=0.072  Sum_probs=49.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|.+++..+.  .|+..+++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        71 ~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~-~qi~~~L~~LH~~------~iiH~dlkp  129 (327)
T cd08227          71 DNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYIL-QGVLKALDYIHHM------GYVHRSVKA  129 (327)
T ss_pred             CCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CEecCCCCh
Confidence            46789999998 579999987653  69999999999 7999999999988      999999987

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=96.57  E-value=0.0017  Score=52.54  Aligned_cols=57  Identities=14%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|...+.... .|+..+++.+. .+++..|.+.|+.      +.+|++|+|
T Consensus        63 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~~~H~dl~p  121 (250)
T cd05085          63 QRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFA-LDAAAGMAYLESK------NCIHRDLAA  121 (250)
T ss_pred             cCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecccCh
Confidence            345789999997 689998887666 79999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=96.56  E-value=0.0019  Score=55.31  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...|.++|||.++.+|.+++.....++...++.++ .|+++.|.+.|+.      +.+|++|++
T Consensus        91 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~-~ql~~aL~~LH~~------~i~H~dl~~  147 (335)
T PTZ00024         91 EGDFINLVMDIMASDLKKVVDRKIRLTESQVKCIL-LQILNGLNVLHKW------YFMHRDLSP  147 (335)
T ss_pred             cCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecccccH
Confidence            45689999999999999999855589999999999 7999999999988      999999876

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=96.55  E-value=0.0019  Score=55.46  Aligned_cols=57  Identities=11%  Similarity=0.032  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|...+...+.|+...+..++ .|++..|.+.|+.      +.+||||+|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  128 (323)
T cd05584          71 TGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYL-SEISLALEHLHQQ------GIIYRDLKP  128 (323)
T ss_pred             cCCeEEEEEeCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            345789999987 57999888866689999999888 6999999999998      999999987

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=96.54  E-value=0.002  Score=52.88  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|.+.+..+. +|+...++.++ .++++.+.+.|+.      +.+|++|+|
T Consensus        76 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~Lh~~------~i~H~di~p  134 (266)
T cd05033          76 KSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGML-RGIASGMKYLSEM------NYVHRDLAA  134 (266)
T ss_pred             cCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCc
Confidence            446789999988 679999998776 89999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=96.53  E-value=0.0022  Score=52.29  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=50.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-++|||.+ |.+|.+++.... .++..+++.++ .+++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  128 (256)
T cd05114          70 QQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMC-QDVCEGMEYLERN------SFIHRDLAA  128 (256)
T ss_pred             cCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHH-HHHHHHHHHHHHC------CccccccCc
Confidence            345679999999 689999887655 89999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=96.53  E-value=0.0016  Score=57.07  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             eeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +-|+|||.++.+|..++...+.|+...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        78 ~~~lv~e~~~~~l~~~~~~~~~l~~~~~~~~~-~qi~~aL~~LH~~------~ivH~dlkp  131 (372)
T cd07853          78 EIYVVTELMQSDLHKIIVSPQPLSSDHVKVFL-YQILRGLKYLHSA------GILHRDIKP  131 (372)
T ss_pred             eEEEEeeccccCHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeCCCCCh
Confidence            67999999999999988755589999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=96.53  E-value=0.0023  Score=52.94  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=51.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++...+ .|+...+..++ .|++..|.+.|+.      +.+|++++|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~-~ql~~~l~~lh~~------~i~h~dl~p  131 (280)
T cd06611          73 YENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVC-RQMLEALNFLHSH------KVIHRDLKA  131 (280)
T ss_pred             cCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCh
Confidence            346789999998 569999998877 89999999999 6999999999998      999999876

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=96.52  E-value=0.0019  Score=53.93  Aligned_cols=57  Identities=18%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|...+...+.++...+..++ .||+..|.+.|+.      +.+|++|+|
T Consensus        68 ~~~~~~~v~e~~~g~~L~~~l~~~~~l~~~~~~~~~-~ql~~~l~~lH~~------~i~H~di~p  125 (278)
T cd05606          68 TPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYA-AEIILGLEHMHNR------FVVYRDLKP  125 (278)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEEcCCCCH
Confidence            456789999987 78999888755589999999999 7999999999998      899999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0616|consensus

Probab=96.52  E-value=0.0022  Score=57.74  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             cCCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          7 HNGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         7 ~~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +...++=|||||.. |..|..++.+|++||.+...=.| .+++..|+++|..      ..+.||+||
T Consensus       113 ~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYA-AeivlAleylH~~------~iiYRDLKP  172 (355)
T KOG0616|consen  113 FKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYA-AEIVLALEYLHSL------DIIYRDLKP  172 (355)
T ss_pred             eccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHH-HHHHHHHHHHHhc------CeeeccCCh
Confidence            34568899999986 59999999999999999999999 7999999999999      999999997

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=96.51  E-value=0.0022  Score=53.69  Aligned_cols=56  Identities=20%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++-|+|||.+ |.+|...+..++.|+...+..++ .||+..|.+.|..      +.+|+||+|
T Consensus        69 ~~~~~lv~e~~~~~~L~~~i~~~~~l~~~~~~~i~-~qi~~al~~lH~~------~ivH~dikp  125 (279)
T cd05633          69 PDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYA-TEIILGLEHMHNR------FVVYRDLKP  125 (279)
T ss_pred             CCeEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcCCCCCCH
Confidence            45678999976 58898888766689999999999 7999999999998      899999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=96.49  E-value=0.0019  Score=52.79  Aligned_cols=57  Identities=11%  Similarity=0.142  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+||+.+ |.+|.+++..+.  .++..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~al~~lH~~------~i~H~di~p  130 (260)
T cd05070          71 SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMA-AQVAAGMAYIERM------NYIHRDLRS  130 (260)
T ss_pred             CCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCcc
Confidence            345678999988 679999887653  69999999999 6999999999998      899999987

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=96.48  E-value=0.002  Score=54.18  Aligned_cols=56  Identities=11%  Similarity=0.005  Sum_probs=49.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++|||.+ |.+|.......+  .|+..+++.++ .||+..|.+.|+.      +.+|++|+|
T Consensus        72 ~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~iiH~dikp  130 (285)
T cd05630          72 KDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYA-AEICCGLEDLHQE------RIVYRDLKP  130 (285)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHhC------CEEeCCCCH
Confidence            46789999987 799988876554  69999999999 6999999999988      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0615|consensus

Probab=96.48  E-value=0.002  Score=59.96  Aligned_cols=57  Identities=7%  Similarity=-0.010  Sum_probs=48.7

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+|-|||||..+ -||-+-.-.++.+..-+---+. .|||..+.+.|..      ++.||||||
T Consensus       247 ~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f-~Qll~avkYLH~~------GI~HRDiKP  304 (475)
T KOG0615|consen  247 VPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLF-KQLLTAVKYLHSQ------GIIHRDIKP  304 (475)
T ss_pred             cCCceEEEEEEecCccHHHHHHhccccccchhHHHH-HHHHHHHHHHHHc------CcccccCCc
Confidence            4577899999985 7887777766667777778888 6999999999999      999999998

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=96.47  E-value=0.0023  Score=52.27  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...|.++|||.+ |.+|..++...+.|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~~l~~~l~~lH~~------~ivH~di~p  134 (267)
T cd06628          77 DADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFV-RQILKGLNYLHNR------GIIHRDIKG  134 (267)
T ss_pred             eCCccEEEEEecCCCCHHHHHHhccCccHHHHHHHH-HHHHHHHHHHHhc------CcccccCCH
Confidence            356889999988 77999999866689999999999 7999999999988      999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=96.46  E-value=0.0018  Score=53.04  Aligned_cols=57  Identities=9%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|.+.+....  +++..+++.++ .++++.+.+.|+.      +.+|+||+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  131 (261)
T cd05068          72 LEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMA-AQVASGMAYLEAQ------NYIHRDLAA  131 (261)
T ss_pred             cCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeccCCc
Confidence            345689999999 999999997654  79999999999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0594|consensus

Probab=96.44  E-value=0.0019  Score=58.16  Aligned_cols=77  Identities=12%  Similarity=0.205  Sum_probs=62.0

Q ss_pred             eeEEeeccccccHHHHHHHcC----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHH
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDL   87 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l   87 (186)
                      -=+|||+.+-.||.+..+.++    ..+..+|..+. .|+|..|.+.|++      +.+|||+||+-..    +.+    
T Consensus        91 ~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m-~Qll~gl~~~H~~------~IlHRDLKPQNlL----i~~----  155 (323)
T KOG0594|consen   91 KLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFM-RQLLRGLAFLHSH------GILHRDLKPQNLL----ISS----  155 (323)
T ss_pred             eEEEEEEeecccHHHHHHhccccccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecccCCcceEE----ECC----
Confidence            445899999999999999887    27778899999 7999999999999      9999999984221    000    


Q ss_pred             HHHHHHHhhHhHHHHhh
Q psy13596         88 TQALVDHLNVGVAQAYL  104 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~  104 (186)
                       ...+...|||++.+|.
T Consensus       156 -~G~lKlaDFGlAra~~  171 (323)
T KOG0594|consen  156 -SGVLKLADFGLARAFS  171 (323)
T ss_pred             -CCcEeeeccchHHHhc
Confidence             2234778999999877

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=96.43  E-value=0.002  Score=54.26  Aligned_cols=58  Identities=9%  Similarity=0.122  Sum_probs=49.1

Q ss_pred             CCCeeeEEeeccccccHHHHHHHc--------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFGSDLQKLLDEH--------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG~dL~~l~~~~--------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..+-++|||.++.+|..++...        . .++..++..++ .|++..|.+.|+.      +.+||||||
T Consensus        70 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~aL~~lH~~------~ivH~Dlkp  136 (317)
T cd07867          70 HSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLL-YQILDGIHYLHAN------WVLHRDLKP  136 (317)
T ss_pred             cCCCeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHH-HHHHHHHHHHHhC------CEEcCCCCH
Confidence            345677999999999999887632        1 47888899999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=96.43  E-value=0.0022  Score=53.71  Aligned_cols=62  Identities=8%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             ccccCCCeeeEEeeccccccHHHHHHHc----C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          4 QQEHNGNSYRFIIISKFGSDLQKLLDEH----K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         4 ~~~~~~~~yrfmVmerlG~dL~~l~~~~----~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..++..+-|||||.++.+|..++...    + .|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~i~h~dlkp  136 (316)
T cd07842          70 VFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLL-WQILNGVHYLHSN------WVLHRDLKP  136 (316)
T ss_pred             EEeCCCCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHH-HHHHHHHHHHHhC------CEeeCCCCH
Confidence            3344445788999999999998877643    2 58899999999 7999999999988      899999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=96.42  E-value=0.0029  Score=52.78  Aligned_cols=57  Identities=11%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.++.+|........ .++...+..++ .|+++.|.+.|..      +.+|++|+|
T Consensus        74 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~i~H~dlkp  131 (291)
T cd07870          74 TKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFM-FQLLRGLAYIHGQ------HILHRDLKP  131 (291)
T ss_pred             cCCeEEEEEecccCCHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCh
Confidence            446889999999999887766555 78888899999 7999999999998      999999987

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=96.42  E-value=0.003  Score=51.76  Aligned_cols=57  Identities=14%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.++ .+|.+++...+.++..++..++ .|++..|.+.|+.      +.+|++++|
T Consensus        77 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dl~p  134 (267)
T cd06646          77 SREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVC-RETLQGLAYLHSK------GKMHRDIKG  134 (267)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCCH
Confidence            3467899999986 6899988766689999999999 6999999999988      999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=96.41  E-value=0.0025  Score=53.50  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.++.+|..++.... .|+..++..++ .+++..|.+.|+.     .+.+|++|+|
T Consensus        86 ~~~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~-~~i~~~l~~lH~~-----~~i~H~dl~p  143 (296)
T cd06618          86 DSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMT-VAIVKALHYLKEK-----HGVIHRDVKP  143 (296)
T ss_pred             CCeEEEEeeccCcCHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhh-----CCEecCCCcH
Confidence            45789999999999999999866 89999999999 7999999999985     4899999886

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=96.40  E-value=0.0024  Score=52.33  Aligned_cols=56  Identities=16%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+||+.++.+|..++...+ .|+...++.++ .+++..|.+.|..      +.+|++|+|
T Consensus        72 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~i~-~~i~~al~~LH~~------~~~h~dl~p  128 (287)
T cd07840          72 KGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYM-KQLLEGLQYLHSN------GILHRDIKG  128 (287)
T ss_pred             CCcEEEEeccccccHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CceeccCcH
Confidence            47899999999999999998776 89999999999 7999999999998      899999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.39  E-value=0.0028  Score=52.00  Aligned_cols=56  Identities=14%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||..+.+|.+++..++ .++...++.++ .+++..|.+.|..      +.+|++|+|
T Consensus        70 ~~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~~l~~  126 (282)
T cd07829          70 ERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIM-YQLLRGLAYCHSH------RILHRDLKP  126 (282)
T ss_pred             CCceEEEecCcCcCHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCh
Confidence            47899999999999999999886 89999999999 6999999999999      899999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=96.38  E-value=0.0032  Score=51.39  Aligned_cols=57  Identities=9%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|+|||.+ |.+|..++..++.++...+..++ .|++..|.+.|..      +.+|++++|
T Consensus        68 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~-~qi~~aL~~lH~~------~i~H~dl~p  125 (260)
T cd05611          68 SKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYI-AEVVLGVEDLHQR------GIIHRDIKP  125 (260)
T ss_pred             cCCeEEEEEeccCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            346789999999 78999999877789999999999 6999999999998      999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=96.36  E-value=0.0027  Score=53.62  Aligned_cols=56  Identities=13%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..+.. .++|+...++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~~~-~~~l~~~~~~~~~-~qi~~~l~~LH~~------~ivH~dlkp  146 (292)
T cd06658          90 VGDELWVVMEFLEGGALTDIVT-HTRMNEEQIATVC-LSVLRALSYLHNQ------GVIHRDIKS  146 (292)
T ss_pred             cCCeEEEEEeCCCCCcHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeecCCCH
Confidence            457889999999 678888764 3489999999999 7999999999998      899999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=96.36  E-value=0.0032  Score=52.38  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..+...+.           .|+..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~al~~LH~~------~i~H~dlkp  158 (296)
T cd05051          91 DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMA-TQIASGMRYLESL------NFVHRDLAT  158 (296)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHH-HHHHHHHHHHHHc------Cccccccch
Confidence            36889999987 589998887654           68999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=96.35  E-value=0.0035  Score=50.67  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|.+++..+ + .++..++..++ .+++..|.+.|..      +.+|++++|
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~-~~l~~al~~lH~~------~i~h~dl~~  129 (256)
T cd08529          70 DKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFF-IQILLGLAHLHSK------KILHRDIKS  129 (256)
T ss_pred             cCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCc
Confidence            346789999987 89999999876 4 79999999999 7999999999988      999999886

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=96.35  E-value=0.0026  Score=53.13  Aligned_cols=57  Identities=12%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++.+|...+..++  .++..++..++ .|++..|.+.|..      +.+|++|+|
T Consensus        72 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~-~qi~~aL~~LH~~------~i~H~dl~p  130 (294)
T PLN00009         72 SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYL-YQILRGIAYCHSH------RVLHRDLKP  130 (294)
T ss_pred             cCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHH-HHHHHHHHHHHhC------CeeCCCCCc
Confidence            456899999999999999887665  47889999999 6999999999988      899999987

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=96.35  E-value=0.0024  Score=52.91  Aligned_cols=55  Identities=18%  Similarity=0.079  Sum_probs=47.0

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.+++|+.+ |.+|.+++..+. .|+..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        81 ~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~iiH~dlkp  137 (279)
T cd05109          81 STVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWC-VQIAKGMSYLEEV------RLVHRDLAA  137 (279)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceecccccc
Confidence            4567888754 567888887665 89999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=96.34  E-value=0.0019  Score=52.18  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             eEEeecccccc--HHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSD--LQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQA   90 (186)
Q Consensus        13 rfmVmerlG~d--L~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~   90 (186)
                      .|||||.++..  +..+.. .+.++...++.++ .+++..+.+.|+.     ++.+||||+|.-..    + .     +.
T Consensus        92 ~~lVmE~~~g~~~~~~~l~-~~~~~~~~~~~i~-~~l~~~l~~lH~~-----~givHrDlkP~NIl----l-~-----~~  154 (190)
T cd05145          92 NVLVMEFIGDDGSPAPRLK-DVPLEEEEAEELY-EQVVEQMRRLYQE-----AGLVHGDLSEYNIL----Y-H-----DG  154 (190)
T ss_pred             CEEEEEEecCCCchhhhhh-hccCCHHHHHHHH-HHHHHHHHHHHHh-----CCEecCCCChhhEE----E-E-----CC
Confidence            58999999754  233332 2378889999999 7999999999994     39999999982100    0 0     11


Q ss_pred             HHHHhhHhHHHHhhhhhhhh
Q psy13596         91 LVDHLNVGVAQAYLNQKKLD  110 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~Nqk~ie  110 (186)
                      -+..+|+|++....++...+
T Consensus       155 ~~~liDFG~a~~~~~~~~~~  174 (190)
T cd05145         155 KPYIIDVSQAVELDHPNALE  174 (190)
T ss_pred             CEEEEEcccceecCCCCHHH
Confidence            24568999998877765553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=96.33  E-value=0.0033  Score=52.43  Aligned_cols=56  Identities=9%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|.++...   ++ +|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        96 ~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~ivH~dlkp  156 (291)
T cd06639          96 GGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYIL-YGALLGLQHLHNN------RIIHRDVKG  156 (291)
T ss_pred             CCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            35789999998 7899887653   45 89999999999 7999999999988      999999987

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=96.32  E-value=0.0034  Score=51.46  Aligned_cols=56  Identities=20%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|.+.+...+.++...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        78 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~H~dl~p  134 (265)
T cd06652          78 ERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYT-RQILEGVSYLHSN------MIVHRDIKG  134 (265)
T ss_pred             CceEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCCCCH
Confidence            45678999999 68999988765688999999999 6999999999988      899999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=96.31  E-value=0.0035  Score=50.47  Aligned_cols=57  Identities=11%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+||+.+ |.+|.+.+...+.++...+..+. .|++..|.+.|..      +.+|.+|+|
T Consensus        64 ~~~~~~~v~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~lh~~------~~~H~~l~p  121 (250)
T cd05123          64 TEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYA-AEIVLALEYLHSL------GIIYRDLKP  121 (250)
T ss_pred             cCCeeEEEEecCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CceecCCCc
Confidence            567899999999 99999998865589999999999 6999999999998      999999886

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=96.30  E-value=0.0029  Score=51.55  Aligned_cols=55  Identities=13%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.++|||.+ |.+|.+++..++  +++..+++.++ .|++..+.+.|+.      +.+|+||+|
T Consensus        71 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~~~H~dl~p  128 (254)
T cd05083          71 NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFS-LDVAEGMEYLESK------KLVHRDLAA  128 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccccCc
Confidence            3468999987 579999988654  69999999999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=96.30  E-value=0.0035  Score=51.16  Aligned_cols=57  Identities=12%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+++... + +++..+++.+. .+++..|.+.|+.      +.+|++|+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~LH~~------~i~H~dl~p  131 (261)
T cd05072          72 KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFS-AQIAEGMAYIERK------NYIHRDLRA  131 (261)
T ss_pred             CCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceeccccch
Confidence            456789999987 78999988754 4 79999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=96.30  E-value=0.0028  Score=55.01  Aligned_cols=54  Identities=17%  Similarity=0.284  Sum_probs=48.5

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+||+.+|.+|..+.. .+.|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        93 ~~~~lv~e~~~~~l~~~~~-~~~l~~~~~~~i~-~qi~~al~~LH~~------gi~H~dlkp  146 (343)
T cd07880          93 HDFYLVMPFMGTDLGKLMK-HEKLSEDRIQFLV-YQMLKGLKYIHAA------GIIHRDLKP  146 (343)
T ss_pred             ceEEEEEecCCCCHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            3569999999999999886 2389999999999 7999999999998      999999986

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=96.28  E-value=0.0031  Score=52.77  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVII   71 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~   71 (186)
                      +..+.|+|||.+ |.+|.+.+...               . .|+..+++.++ .++++.|.+.|..      +.+|++|+
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~al~~lH~~------~i~H~dlk  150 (291)
T cd05094          78 DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA-SQIASGMVYLASQ------HFVHRDLA  150 (291)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecccC
Confidence            456789999998 79999988643               2 48899999999 7999999999988      99999998


Q ss_pred             h
Q psy13596         72 G   72 (186)
Q Consensus        72 ~   72 (186)
                      |
T Consensus       151 p  151 (291)
T cd05094         151 T  151 (291)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=96.24  E-value=0.0038  Score=51.93  Aligned_cols=57  Identities=16%  Similarity=0.259  Sum_probs=49.4

Q ss_pred             CCeeeEEeeccccccHHHHHHHc----C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEH----K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~----~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+-|+|||.++.+|...+...    + .|+...++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        77 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~qi~~~L~~LH~~------~i~H~dl~~  138 (295)
T cd07837          77 GKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFM-YQLLKGVAHCHKH------GVMHRDLKP  138 (295)
T ss_pred             CCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCh
Confidence            44567999999999998887653    3 58999999999 7999999999988      999999886

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=96.24  E-value=0.0038  Score=52.92  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=48.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC----------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK----------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVII   71 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~----------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~   71 (186)
                      ...+.|+|||.+ |.+|.+++..++                .|+..+++.++ .||+..|.+.|+.      +.+|+||+
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~al~~LH~~------gi~H~dlk  151 (303)
T cd05088          79 HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA-ADVARGMDYLSQK------QFIHRDLA  151 (303)
T ss_pred             CCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHH-HHHHHHHHHHHhC------Cccccccc
Confidence            346789999998 689998886432                57899999999 7999999999988      99999998


Q ss_pred             h
Q psy13596         72 G   72 (186)
Q Consensus        72 ~   72 (186)
                      |
T Consensus       152 p  152 (303)
T cd05088         152 A  152 (303)
T ss_pred             h
Confidence            7

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=96.22  E-value=0.0036  Score=51.45  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|.+.+..+++|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dl~~  136 (272)
T cd06629          79 TEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFT-EQVLEGLAYLHSK------GILHRDLKA  136 (272)
T ss_pred             cCCceEEEEecCCCCcHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhhC------CeeecCCCh
Confidence            456789999988 89999999877789999999999 6999999999998      899999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=96.21  E-value=0.0033  Score=51.43  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.++|||.+ |.+|.+++... + .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~-~~i~~al~~LH~~------~i~H~dl~p  130 (260)
T cd05067          71 TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMA-AQIAEGMAFIERK------NYIHRDLRA  130 (260)
T ss_pred             ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHhcC------CeecccccH
Confidence            345789999987 78999887653 4 79999999999 6999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=96.18  E-value=0.0049  Score=50.53  Aligned_cols=57  Identities=21%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++ .+|.+++..++ .|+..+++.++ .+++..|.+.|..      +.+|++|+|
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~al~~lH~~------~i~H~dlkp  135 (268)
T cd05063          77 KFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGML-RGIAAGMKYLSDM------NYVHRDLAA  135 (268)
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceeccccch
Confidence            3457899999886 58999888766 89999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=96.17  E-value=0.0049  Score=50.22  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.|+|||.+ |.+|...+.....++..+++.+. .+++..|.+.|..      +.+|++++|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~~i~~~l~~lh~~------~i~h~dl~~  128 (258)
T cd05578          71 DEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWI-CEIVLALEYLHSK------GIIHRDIKP  128 (258)
T ss_pred             CCCeEEEEEeCCCCCCHHHHHHhcCCcCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            567899999988 89999988866689999999999 7999999999988      899999886

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=96.16  E-value=0.0032  Score=51.86  Aligned_cols=57  Identities=11%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             CeeeEEeeccccccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+..+|.+++...   + .|+..+++.++ .|++..|.+.|+.     .+.+|++|+|
T Consensus        72 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~-----~~i~h~dlkp  132 (283)
T cd06617          72 EGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIA-VSIVKALEYLHSK-----LSVIHRDVKP  132 (283)
T ss_pred             CCcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHH-HHHHHHHHHHhhc-----CCeecCCCCH
Confidence            4678999999999999988753   3 69999999999 7999999999986     5899999887

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=96.16  E-value=0.0035  Score=51.42  Aligned_cols=57  Identities=14%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.|+|||.+. .+|.+++... + .++..+++.++ .+++..|.+.|+.      +.+|+||+|
T Consensus        71 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~al~~lH~~------~i~H~dl~~  130 (260)
T cd05069          71 SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMA-AQIADGMAYIERM------NYIHRDLRA  130 (260)
T ss_pred             cCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeecccCc
Confidence            3457899999985 5999998764 3 58999999999 7999999999988      899999986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=96.16  E-value=0.0042  Score=50.68  Aligned_cols=56  Identities=11%  Similarity=0.095  Sum_probs=49.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|.+++...+  .++..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        72 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlkp  130 (256)
T cd05082          72 KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS-LDVCEAMEYLEAN------NFVHRDLAA  130 (256)
T ss_pred             CCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeccccch
Confidence            35679999998 479999988655  58999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=96.16  E-value=0.0043  Score=51.71  Aligned_cols=56  Identities=11%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+||+.++.+|...+...+ .|+...+..++ .|+++.|.+.|..      +.+|++++|
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~-~~l~~al~~lH~~------~i~H~dl~p  143 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYM-LQLLEGINYLHEN------HILHRDIKA  143 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            45789999999999999888766 89999999999 6999999999998      999999886

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=96.15  E-value=0.004  Score=53.54  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=49.4

Q ss_pred             CCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.|+||+.++.+|..++. .++|+...+..++ .|++..|.+.|+.      +.+||+|+|
T Consensus        79 ~~~~~~lv~e~~~~~l~~~~~-~~~l~~~~~~~i~-~ql~~aL~~LH~~------~ivH~dlkp  134 (336)
T cd07849          79 SFNDVYIVQELMETDLYKLIK-TQHLSNDHIQYFL-YQILRGLKYIHSA------NVLHRDLKP  134 (336)
T ss_pred             ccceEEEEehhcccCHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            345789999999999988875 3389999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=96.14  E-value=0.0048  Score=50.73  Aligned_cols=57  Identities=7%  Similarity=-0.039  Sum_probs=47.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.++.....     .++..+++.++ .||+..|.+.|+.      +.+||||+|
T Consensus        66 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~ivH~dlkp  128 (269)
T cd05042          66 ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMA-CEVASGLLWLHQA------DFIHSDLAL  128 (269)
T ss_pred             CCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHH-HHHHHHHHHHHhc------CEecccccH
Confidence            346789999999 469999887543     25677888999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0671|consensus

Probab=96.13  E-value=0.0025  Score=58.69  Aligned_cols=51  Identities=12%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             EeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         15 IIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        15 mVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +|+|+||.|+.+.+..|+  .||...|-.+| .|++..+.+.|.-      +.+|-|+||
T Consensus       168 ivfellG~S~~dFlk~N~y~~fpi~~ir~m~-~QL~~sv~fLh~~------kl~HTDLKP  220 (415)
T KOG0671|consen  168 IVFELLGLSTFDFLKENNYIPFPIDHIRHMG-YQLLESVAFLHDL------KLTHTDLKP  220 (415)
T ss_pred             EEEeccChhHHHHhccCCccccchHHHHHHH-HHHHHHHHHHHhc------ceeecCCCh
Confidence            699999999999999988  69999999999 7999999999999      999999997

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=96.13  E-value=0.0036  Score=53.28  Aligned_cols=55  Identities=11%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-|+||+.++.+|..++...+.|+...++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        77 ~~~~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~-~~l~~~l~~LH~~------gi~H~dlkp  131 (330)
T cd07834          77 NDVYIVTELMETDLHKVIKSPQPLTDDHIQYFL-YQILRGLKYLHSA------NVIHRDLKP  131 (330)
T ss_pred             cceEEEecchhhhHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            467999999999999988754589999999999 7999999999998      899999987

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=96.13  E-value=0.0047  Score=51.79  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=48.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.++|||.+ |.+|...+... + .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~ql~~~l~~lH~~------~iiH~dikp  130 (285)
T cd05632          71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYA-AEILCGLEDLHRE------NTVYRDLKP  130 (285)
T ss_pred             cCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecCCCH
Confidence            456789999977 46888766544 3 79999999999 7999999999988      999999987

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=96.12  E-value=0.0053  Score=49.82  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++||+.+ |.+|..++..+. .|+...+..++ .+++..+.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~h~dl~p  128 (256)
T cd05112          70 ERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMC-LDVCEGMAYLESS------NVIHRDLAA  128 (256)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHH-HHHHHHHHHHHHC------Ccccccccc
Confidence            345779999977 678999988766 89999999999 7999999999988      899999886

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=96.12  E-value=0.0055  Score=51.80  Aligned_cols=57  Identities=11%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC----------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK----------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVII   71 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~----------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~   71 (186)
                      ...+.|+|||.++ .+|.+++...+                .++.++++.++ .|+++.|.+.|+.      +.+|+||+
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~aL~~lH~~------gi~H~dlk  167 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCA-YQVARGMEYLASK------KCIHRDLA  167 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHH-HHHHHHHHHHHHC------Cccccccc
Confidence            3457899999985 69999987532                47888999999 7999999999988      99999998


Q ss_pred             h
Q psy13596         72 G   72 (186)
Q Consensus        72 ~   72 (186)
                      |
T Consensus       168 p  168 (307)
T cd05098         168 A  168 (307)
T ss_pred             H
Confidence            7

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=96.12  E-value=0.0048  Score=50.95  Aligned_cols=57  Identities=9%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.++.+|..++....  +++..+++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        69 ~~~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~L~~lH~~------~~~H~dl~p  127 (283)
T cd07835          69 SENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYL-YQLLQGIAYCHSH------RVLHRDLKP  127 (283)
T ss_pred             cCCeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeCCCCCH
Confidence            457899999999999999888665  79999999999 7999999999988      899999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=96.12  E-value=0.0052  Score=51.13  Aligned_cols=57  Identities=7%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+ |.+|..++...+.|+.+.+..++ .+|+..|.+.|+.     .+.+|++++|
T Consensus        75 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~-----~~i~H~dl~p  132 (284)
T cd06620          75 ENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIA-VAVVEGLTYLYNV-----HRIMHRDIKP  132 (284)
T ss_pred             CCEEEEEEecCCCCCHHHHHHhccCCCHHHHHHHH-HHHHHHHHHHHHh-----cCeeccCCCH
Confidence            46899999999 47899988866689999999999 7999999999986     4799999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=96.10  E-value=0.005  Score=50.62  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             ccCCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          6 EHNGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         6 ~~~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ......+.++|||.+ |.+|.+.+...+.++...++.++ .||+..|.+.|..      +.+|++++|
T Consensus        74 ~~~~~~~~~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~~l~~LH~~------~i~H~~l~p  134 (266)
T cd06651          74 RDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYT-RQILEGMSYLHSN------MIVHRDIKG  134 (266)
T ss_pred             EcCCCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeCCCCH
Confidence            333456788999988 57999988765589999999999 7999999999988      899999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=96.08  E-value=0.0043  Score=50.68  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++||+.+ |.+|.+++...+.++..+++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        67 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~~l~~lh~~------~i~H~di~p  123 (257)
T cd05060          67 GEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELA-HQVAMGMAYLESK------HFVHRDLAA  123 (257)
T ss_pred             CCceEEEEEeCCCCcHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHhhc------CeeccCccc
Confidence            45678999975 56899988765589999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0669|consensus

Probab=96.08  E-value=0.0032  Score=56.13  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             eEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAANDLTQA   90 (186)
Q Consensus        13 rfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~~~l~~~   90 (186)
                      -+|||+++-.||--|+..-. +|+++++-... -..++.|.++|..      +++|||||+--. -.+          +.
T Consensus        99 ~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~M-k~Lm~GL~~iHr~------kilHRDmKaaNvLIt~----------dg  161 (376)
T KOG0669|consen   99 FYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVM-KGLMNGLYYIHRN------KILHRDMKAANVLITK----------DG  161 (376)
T ss_pred             eeeeHHHhhhhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHh------hHHhhcccHhhEEEcC----------Cc
Confidence            48999999999999999766 99999999999 5899999999999      999999876110 000          23


Q ss_pred             HHHHhhHhHHHHhhhhhh
Q psy13596         91 LVDHLNVGVAQAYLNQKK  108 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~Nqk~  108 (186)
                      ++...|||.+.+|.-.+.
T Consensus       162 ilklADFGlar~fs~~~n  179 (376)
T KOG0669|consen  162 ILKLADFGLARAFSTSKN  179 (376)
T ss_pred             eEEeeccccccceecccc
Confidence            455578888877765443

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=96.08  E-value=0.0039  Score=53.70  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=49.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-+||||.+ |.+|..++..++.++...+..++ .|++..|.+.|+.     .+.+|+||+|
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~~i~~~l~~lH~~-----~~ivH~dlkp  132 (331)
T cd06649          75 DGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVS-IAVLRGLAYLREK-----HQIMHRDVKP  132 (331)
T ss_pred             CCEEEEEeecCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHhhc-----CCEEcCCCCh
Confidence            35679999988 57999999866689999999999 7999999999987     4799999987

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=96.08  E-value=0.0046  Score=51.68  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..+....+             .|+..+++.++ .|++..|.+.|+.      +.+||+|+|
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ql~~aL~~lH~~------~i~H~dlkp  148 (288)
T cd05093          78 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIA-QQIAAGMVYLASQ------HFVHRDLAT  148 (288)
T ss_pred             cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeecccCc
Confidence            456889999987 589988876332             48999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=96.06  E-value=0.0053  Score=49.58  Aligned_cols=57  Identities=11%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.++|||.+ |.+|.+++... + .++...++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lh~~------~i~h~dl~~  129 (256)
T cd08220          70 EDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFF-VQILLALHHVHTK------LILHRDLKT  129 (256)
T ss_pred             cCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            456889999999 78999999865 4 69999999999 6999999999998      999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=96.06  E-value=0.0049  Score=50.56  Aligned_cols=57  Identities=9%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++.+|..++..++ .++...++.++ .+++..|.+.|..      +.+|++++|
T Consensus        69 ~~~~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~dl~p  126 (283)
T cd05118          69 HKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYL-YQLLQGLAFCHSH------GILHRDLKP  126 (283)
T ss_pred             cCCCEEEEEeccCCCHHHHHHhhcccCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCcCH
Confidence            347889999999999999999876 89999999999 6999999999998      899999886

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=96.05  E-value=0.0054  Score=49.72  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.+ |.+|.+.+..+ + .++..++..++ .+++..+.+.|+.      +.+|++|+|
T Consensus        72 ~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~l~~~l~~lH~~------~i~H~di~p  130 (257)
T cd08223          72 DGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWF-VQIAMALQYLHEK------HILHRDLKT  130 (257)
T ss_pred             CCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCc
Confidence            34678999998 57899888764 3 69999999999 7999999999998      999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0660|consensus

Probab=96.05  E-value=0.0019  Score=58.71  Aligned_cols=103  Identities=13%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             eeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy13596         12 YRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQAL   91 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~L   91 (186)
                      -=++|+|+++.||.+|.+....++..-+--+- +|+|..|.++|++      +.+|||+||.-..=+    +     +--
T Consensus       100 DvYiV~elMetDL~~iik~~~~L~d~H~q~f~-YQiLrgLKyiHSA------nViHRDLKPsNll~n----~-----~c~  163 (359)
T KOG0660|consen  100 DVYLVFELMETDLHQIIKSQQDLTDDHAQYFL-YQILRGLKYIHSA------NVIHRDLKPSNLLLN----A-----DCD  163 (359)
T ss_pred             eeEEehhHHhhHHHHHHHcCccccHHHHHHHH-HHHHHhcchhhcc------cccccccchhheeec----c-----CCC
Confidence            34799999999999999954468888777777 7999999999999      999999998321100    0     111


Q ss_pred             HHHhhHhHHHHhhhhhhhh-----------HHHHHHHHHHHHHHhhHHHHH
Q psy13596         92 VDHLNVGVAQAYLNQKKLD-----------AEAKQLHTNAITFSKQTQQWL  131 (186)
Q Consensus        92 v~~Ln~gvs~~y~Nqk~ie-----------~E~K~L~~~Ta~laKqt~qW~  131 (186)
                      .-..|||++....+. ..+           =.+=+|.-....|.+..+=|.
T Consensus       164 lKI~DFGLAR~~~~~-~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWS  213 (359)
T KOG0660|consen  164 LKICDFGLARYLDKF-FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWS  213 (359)
T ss_pred             EEeccccceeecccc-CcccchhcceeeeeecCHHHHhccccccchhhhhh
Confidence            256788988876543 111           123345566677777777775

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=96.04  E-value=0.0054  Score=50.45  Aligned_cols=57  Identities=18%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC---------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK---------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~---------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|||||.+ |.+|..++....         .|+...++.+. .|++..|.+.|..      +.+|+||+|
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~~l~~LH~~------~i~H~dlkp  145 (275)
T cd05046          79 EAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALC-TQIALGMDHLSNA------RFVHRDLAA  145 (275)
T ss_pred             CCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHH-HHHHHHHHHhhhc------CcccCcCcc
Confidence            446789999998 479999887654         58999999999 6999999999988      999999997

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=96.03  E-value=0.0046  Score=52.54  Aligned_cols=57  Identities=11%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..+...++.|+...+..++ .|+++.|.+.|+.     .+.+|++|+|
T Consensus        71 ~~~~~lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~-~~i~~~l~~lH~~-----~~i~H~dl~p  128 (308)
T cd06615          71 DGEISICMEHMDGGSLDQVLKKAGRIPENILGKIS-IAVLRGLTYLREK-----HKIMHRDVKP  128 (308)
T ss_pred             CCEEEEEeeccCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhh-----CCEEECCCCh
Confidence            46789999987 68999999877789999999999 7999999999985     4799999886

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=96.01  E-value=0.0055  Score=50.64  Aligned_cols=57  Identities=12%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +.++.|+|||.++.+|.+.+..+.  .++...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~i~~~l~~lh~~------~i~H~~l~p  128 (284)
T cd07860          70 TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYL-FQLLQGLAFCHSH------RVLHRDLKP  128 (284)
T ss_pred             cCCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            456889999999999998887653  79999999999 7999999999988      899999886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=96.01  E-value=0.0054  Score=52.65  Aligned_cols=58  Identities=9%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             cCCCeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          7 HNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         7 ~~~~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+..+.|||||.++.+|...+... .|+...+..++ .||+..|.+.|+.      +.+|++|+|
T Consensus        78 ~~~~~~~~lv~e~~~~~L~~~~~~~-~~~~~~~~~i~-~qi~~~L~~LH~~------~i~H~dl~p  135 (337)
T cd07852          78 AENDKDIYLVFEYMETDLHAVIRAN-ILEDVHKRYIM-YQLLKALKYIHSG------NVIHRDLKP  135 (337)
T ss_pred             cCCCceEEEEecccccCHHHHHhcC-CCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            3445678999999999998887643 78888888889 7999999999998      999999886

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=96.00  E-value=0.006  Score=49.53  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=50.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+..+ + .++..+++.++ .|++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~~l~~  129 (256)
T cd08218          70 ENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWF-VQICLALKHVHDR------KILHRDIKS  129 (256)
T ss_pred             CCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCCCCH
Confidence            446899999988 78999998865 4 79999999999 7999999999988      999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=96.00  E-value=0.0062  Score=50.88  Aligned_cols=57  Identities=18%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .....|||||.+ |.+|.+++..   .. .|+...+..++ .+++..|.+.|+.      +.+|++++|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~-~~i~~~L~~lH~~------~i~H~dl~~  133 (287)
T cd06621          72 SSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIA-ESVLKGLSYLHSR------KIIHRDIKP  133 (287)
T ss_pred             CCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            344678999998 6899887663   33 79999999999 7999999999998      999999875

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=95.99  E-value=0.0073  Score=48.10  Aligned_cols=56  Identities=20%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..++...+.|+...+..++ .+++..|.+.|+.      +.+|++++|
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~~~h~dl~p  129 (260)
T cd06606          73 KNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYT-RQILEGLAYLHSN------GIVHRDIKG  129 (260)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCCH
Confidence            36789999999 99999998866689999999999 6999999999998      999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=95.96  E-value=0.0056  Score=50.84  Aligned_cols=57  Identities=11%  Similarity=0.018  Sum_probs=48.7

Q ss_pred             CeeeEEeeccccccHHHHHHH----cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDE----HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~----~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+||+.++.+|..++..    .+ .|+..++..++ .+++..|.+.|+.     .+.+|+||+|
T Consensus        75 ~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~-~~i~~~l~~lh~~-----~~i~H~dlkp  136 (288)
T cd06616          75 EGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIA-VATVKALNYLKEE-----LKIIHRDVKP  136 (288)
T ss_pred             CCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHhhc-----CCeeccCCCH
Confidence            356789999999998887653    23 79999999999 7999999999986     5899999987

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=95.96  E-value=0.0065  Score=49.91  Aligned_cols=56  Identities=20%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|...+...+.++.+.+..++ .|+++.|.+.|+.      +.+|++++|
T Consensus        78 ~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~-~~i~~al~~LH~~------~i~H~dl~p  134 (264)
T cd06653          78 EKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYT-RQILQGVSYLHSN------MIVHRDIKG  134 (264)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCCCCH
Confidence            34567899998 68999988866689999999999 6999999999988      899999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=95.94  E-value=0.0059  Score=50.64  Aligned_cols=56  Identities=7%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.++ .+|..++.... .++..++..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        74 ~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~-~qi~~~L~~LH~~------~i~H~dlkp  131 (282)
T cd06643          74 ENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVC-KQTLEALNYLHEN------KIIHRDLKA  131 (282)
T ss_pred             CCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCc
Confidence            467899999884 67777766555 79999999999 7999999999998      999999986

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=95.93  E-value=0.0065  Score=51.82  Aligned_cols=57  Identities=14%  Similarity=0.132  Sum_probs=51.1

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.++|||.++.+|..++...+ .++..+++.++ .|++..|.+.|..      +.+|++++|
T Consensus        92 ~~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~-~qi~~al~~LH~~------gi~H~dl~p  149 (313)
T cd06633          92 KEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAIT-HGALQGLAYLHSH------NMIHRDIKA  149 (313)
T ss_pred             eCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCh
Confidence            347889999999999999998766 89999999999 6999999999988      899999886

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=95.93  E-value=0.0057  Score=53.20  Aligned_cols=53  Identities=6%  Similarity=0.114  Sum_probs=46.4

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.++.+|...+.  ..++...+..+. .||+..|.+.|+.      +.+||||+|
T Consensus        99 ~~~~lv~e~~~~~l~~~~~--~~~~~~~~~~~~-~qi~~~L~~LH~~------~ivHrDlkp  151 (359)
T cd07876          99 QDVYLVMELMDANLCQVIH--MELDHERMSYLL-YQMLCGIKHLHSA------GIIHRDLKP  151 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHh--ccCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            3579999999998877653  368999999999 7999999999999      999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG1290|consensus

Probab=95.92  E-value=0.006  Score=58.03  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=54.7

Q ss_pred             CCCeeeEEeeccccccHHHHHHHcC-C-CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFGSDLQKLLDEHK-E-FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG~dL~~l~~~~~-k-f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.+=-||+|-||.+|-++..+++ + +|+.-|-+|+ .|+|..|-|.|.+     -+++|-||||
T Consensus       156 pNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~-~qvL~GLdYLH~e-----cgIIHTDlKP  216 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEIC-RQVLTGLDYLHRE-----CGIIHTDLKP  216 (590)
T ss_pred             CCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHHHHHHHh-----cCccccCCCc
Confidence            4556678999999999999999999 4 9999999999 7999999999999     8999999997

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=95.92  E-value=0.0067  Score=49.40  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|.+++... + .|+..+++.++ .+|+..|.+.|..      +.+|++|+|
T Consensus        73 ~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~-~~i~~al~~lh~~------~i~h~di~p  131 (261)
T cd05034          73 EEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMA-AQIAEGMAYLESR------NYIHRDLAA  131 (261)
T ss_pred             CCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCcch
Confidence            46789999987 67898888764 3 79999999999 6999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=95.92  E-value=0.0059  Score=52.35  Aligned_cols=56  Identities=16%  Similarity=0.081  Sum_probs=48.9

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+. .+|.+++....  .++...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        71 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~qi~~aL~~lH~~------~ivHrDlkp  129 (328)
T cd08226          71 GSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNIL-FGALRGLNYLHQN------GYIHRNIKA  129 (328)
T ss_pred             CCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            457799999876 69999888654  69999999999 7999999999988      999999997

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=95.90  E-value=0.0082  Score=49.67  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=48.9

Q ss_pred             CeeeEEeeccccc-cHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGS-DLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~-dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.|+|||.++. +|.+++....  .++...++.+. .|+++.|.+.|+.      +.+|++++|
T Consensus        91 ~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~qi~~al~~LH~~------~ivH~dl~~  149 (282)
T cd06636          91 DDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYIC-REILRGLAHLHAH------KVIHRDIKG  149 (282)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            5688999999975 9999887643  68899899999 6999999999998      999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=95.89  E-value=0.0058  Score=49.17  Aligned_cols=55  Identities=18%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-C-CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-E-FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-k-f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ++.++||+.+ |.+|.+++.... . ++...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        74 ~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ql~~~l~~lh~~------~~~h~dl~~  131 (258)
T smart00219       74 EPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFA-LQIARGMEYLESK------NFIHRDLAA  131 (258)
T ss_pred             CeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHH-HHHHHHHHHHhcC------Ceeeccccc
Confidence            6789999998 789999998655 4 9999999999 6999999999999      999999987

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=95.89  E-value=0.0079  Score=49.28  Aligned_cols=55  Identities=15%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             eeeEEeecccc-ccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.++ .+|.+++... + .|+...++.++ .|++..|.+.|+.      +.+|++++|
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~-~qi~~~l~~LH~~------~ivh~dl~~  139 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYIC-REILRGLSHLHQH------KVIHRDIKG  139 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CCccCCCCH
Confidence            57899999996 5999998874 3 79999999999 7999999999998      999999876

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=95.88  E-value=0.007  Score=49.42  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.. |.+|..++.....++...+..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~~i~~~l~~lH~~------~~~h~dl~~  121 (262)
T cd05572          64 DKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYI-ACVVLAFEYLHNR------GIIYRDLKP  121 (262)
T ss_pred             cCCccEEEEecCCCCcHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHhhC------CcccCCCCH
Confidence            346789999985 78999998865589999999999 6999999999998      999999876

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=95.87  E-value=0.0079  Score=49.87  Aligned_cols=56  Identities=11%  Similarity=0.059  Sum_probs=49.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|...+...+  .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        65 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~ql~~~l~~lH~~------~i~H~di~p  123 (277)
T cd05577          65 KDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYA-AQIICGLEHLHQR------RIVYRDLKP  123 (277)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            45789999998 579988877655  69999999999 7999999999998      999999886

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=95.87  E-value=0.0056  Score=56.23  Aligned_cols=56  Identities=13%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+ |.+|.+.+...   . .|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus       137 ~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~-~qi~~aL~~lH~~------~ivHrDlkp  197 (478)
T PTZ00267        137 DDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLF-YQIVLALDEVHSR------KMMHRDLKS  197 (478)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHhC------CEEECCcCH
Confidence            46789999998 88998876532   2 58899999999 6999999999998      999999997

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=95.87  E-value=0.007  Score=51.14  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=50.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++... + .|+...+..++ .|++..|.+.|..      +.+|++|+|
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dlkp  131 (316)
T cd05574          72 TETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYA-AEVLLALEYLHLL------GIVYRDLKP  131 (316)
T ss_pred             cCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCh
Confidence            456889999965 88999998864 4 79999999999 7999999999988      999999986

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0659|consensus

Probab=95.86  E-value=0.0019  Score=57.44  Aligned_cols=104  Identities=10%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             eEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQAL   91 (186)
Q Consensus        13 rfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~L   91 (186)
                      =-+|+|-+-.||+.+.+... -|+..-|-..+ ++||+.+.+.|.+      -.+||||||.-..     -+    ++.+
T Consensus        76 l~lVfEfm~tdLe~vIkd~~i~l~pa~iK~y~-~m~LkGl~y~H~~------~IlHRDlKPnNLL-----is----~~g~  139 (318)
T KOG0659|consen   76 LSLVFEFMPTDLEVVIKDKNIILSPADIKSYM-LMTLKGLAYCHSK------WILHRDLKPNNLL-----IS----SDGQ  139 (318)
T ss_pred             eEEEEEeccccHHHHhcccccccCHHHHHHHH-HHHHHHHHHHHhh------hhhcccCCccceE-----Ec----CCCc
Confidence            34899999999999999887 79999999999 7999999999999      9999999984221     00    1445


Q ss_pred             HHHhhHhHHHHhhhhhhhhH--------HHHHHHHHHHHHHhhHHHHHH
Q psy13596         92 VDHLNVGVAQAYLNQKKLDA--------EAKQLHTNAITFSKQTQQWLS  132 (186)
Q Consensus        92 v~~Ln~gvs~~y~Nqk~ie~--------E~K~L~~~Ta~laKqt~qW~~  132 (186)
                      +..-|||++..|-+..+...        .+=+|.=|+..|....+-|+.
T Consensus       140 lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWav  188 (318)
T KOG0659|consen  140 LKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAV  188 (318)
T ss_pred             EEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhH
Confidence            56789999999998777763        235667788888888888864

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=95.86  E-value=0.0082  Score=50.99  Aligned_cols=56  Identities=11%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.++.+|..++..++ .|+..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        87 ~~~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~-~~l~~~l~~LH~~------~i~H~dl~p  143 (308)
T cd06634          87 EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVT-HGALQGLAYLHSH------NMIHRDVKA  143 (308)
T ss_pred             CCeeEEEEEccCCCHHHHHHHcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            46789999999999998887777 79999999999 6999999999988      999999886

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=95.85  E-value=0.0062  Score=50.50  Aligned_cols=57  Identities=11%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc--C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH--K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~--~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..+...+  . .|+...+..++ .++++.|.+.|..     .+.+|++|+|
T Consensus        71 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~-----~~i~H~dl~p  131 (286)
T cd06622          71 EGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRIT-YAVVKGLKFLKEE-----HNIIHRDVKP  131 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHH-HHHHHHHHHHHhc-----CCEeeCCCCH
Confidence            46889999988 67998888764  3 79999999999 6999999999975     5899999987

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=95.85  E-value=0.0089  Score=48.87  Aligned_cols=56  Identities=16%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++|||.+ |.+|.+++...+.|+...+..++ .|++..|.+.|..      +.+|++|+|
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dl~p  130 (265)
T cd06631          74 DNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYT-KQILDGVAYLHNN------CVVHRDIKG  130 (265)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCcCH
Confidence            47899999987 78999999866689999999999 6999999999988      899999886

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0595|consensus

Probab=95.84  E-value=0.0066  Score=56.29  Aligned_cols=82  Identities=7%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH-----HHHHHH
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR-----RKEALS   82 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~-----rk~a~~   82 (186)
                      ..+|=|||||.+- .||.......+++++.|+-... .|+=+.|...|..      +++|||+||+-..     +..   
T Consensus        80 ~~~~i~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm-~QLA~alq~L~~~------~IiHRDLKPQNiLLs~~~~~~---  149 (429)
T KOG0595|consen   80 DDDFIYLVMEYCNGGDLSDYIRRRGRLPEATARHFM-QQLASALQFLHEN------NIIHRDLKPQNILLSTTARND---  149 (429)
T ss_pred             cCCeEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeccCCcceEEeccCCCCC---
Confidence            3468899999995 9999999988899999999999 6999999999999      9999999984221     110   


Q ss_pred             HHHHHHHHHHHHhhHhHHHHhhh
Q psy13596         83 AANDLTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        83 s~~~l~~~Lv~~Ln~gvs~~y~N  105 (186)
                           +......-|||.|+-..+
T Consensus       150 -----~~~~LKIADFGfAR~L~~  167 (429)
T KOG0595|consen  150 -----TSPVLKIADFGFARFLQP  167 (429)
T ss_pred             -----CCceEEecccchhhhCCc
Confidence                 003445568888865544

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=95.77  E-value=0.0084  Score=51.12  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=50.1

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+..+|..++...+ .++...+..++ .+|+..|.+.|+.      +.+|++++|
T Consensus        97 ~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~i~-~~i~~~l~~lH~~------~i~H~dL~p  153 (317)
T cd06635          97 EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAIT-HGALQGLAYLHSH------NMIHRDIKA  153 (317)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCc
Confidence            45789999999989999888766 89999999999 6999999999998      999999886

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=95.76  E-value=0.0083  Score=49.78  Aligned_cols=57  Identities=14%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..+.|||||.+ |.+|.+++.. ++++...++.++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        78 ~~~~~~~lv~e~~~~~~l~~~~~~-~~l~~~~~~~i~-~~l~~~l~~lH~~------~i~H~dlkp  135 (283)
T cd05080          78 QGGKGLQLIMEYVPLGSLRDYLPK-HKLNLAQLLLFA-QQICEGMAYLHSQ------HYIHRDLAA  135 (283)
T ss_pred             CCCceEEEEecCCCCCCHHHHHHH-cCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccccCh
Confidence            3456789999976 4688888763 379999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=95.76  E-value=0.0072  Score=50.92  Aligned_cols=56  Identities=11%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..+...+               + .|+..+++.++ .|+++.|.+.|+.      +.+|+||+|
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~qi~~al~~LH~~------givH~dlkp  165 (304)
T cd05101          93 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT-YQVARGMEYLASQ------KCIHRDLAA  165 (304)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHH-HHHHHHHHHHHHC------Ceeeccccc
Confidence            45678999988 46999888753               2 47778889999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=95.75  E-value=0.0097  Score=49.22  Aligned_cols=58  Identities=9%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             CCCeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..+.|+|||.+ |.+|..+...   .+ +++...+..++ .|++..|.+.|+.      +.+|++++|
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlkp  152 (286)
T cd06638          90 KNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYIL-HEALMGLQHLHVN------KTIHRDVKG  152 (286)
T ss_pred             CCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHH-HHHHHHHHHHHhC------CccccCCCH
Confidence            3456899999988 7899887652   23 68888999999 6999999999998      999999886

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=95.74  E-value=0.007  Score=49.98  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC----------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK----------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~----------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.+ |.+|.+++..+.                .|+..+++.++ .+++..|.+.|+.      +.+|+||+|
T Consensus        68 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~al~~lH~~------~i~H~dikp  140 (270)
T cd05047          68 RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA-ADVARGMDYLSQK------QFIHRDLAA  140 (270)
T ss_pred             CCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHH-HHHHHHHHHHHHC------CEeeccccc
Confidence            45679999988 578998876432                47888999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=95.74  E-value=0.0092  Score=49.63  Aligned_cols=57  Identities=12%  Similarity=0.080  Sum_probs=48.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.+||||.+ |.+|.+.+..++.|+...+..++ .|++..|.+.|..      ..+|++|+|
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~ql~~~l~~lH~~------~~~H~dl~p  133 (288)
T cd05583          76 TDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYI-AEIVLALDHLHQL------GIIYRDIKL  133 (288)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCCH
Confidence            345778999998 46888887755589999999999 6999999999988      999999876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=95.72  E-value=0.01  Score=48.14  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=50.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|..++... + .|+..++..+. .|++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~dl~p  129 (256)
T cd08221          70 DDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYL-FQIVSAVSYIHKA------GILHRDIKT  129 (256)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHH-HHHHHHHHHHHhC------CccccCCCh
Confidence            346789999998 68999988765 4 79999999999 6999999999988      899999887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=95.71  E-value=0.011  Score=47.71  Aligned_cols=57  Identities=23%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+++...+.++...++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~~  130 (258)
T cd06632          73 EEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYT-RQILLGLEYLHDR------NTVHRDIKG  130 (258)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            346789999999 68999999866679999999999 6999999999988      999999886

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=95.71  E-value=0.01  Score=50.32  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|.+++....  .|+..+++.++ .+|+..|.+.|+.      +.+|++|+|
T Consensus       110 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~-~~i~~~l~~lH~~------~ivH~dlkp  169 (302)
T cd05055         110 IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFS-YQVAKGMAFLASK------NCIHRDLAA  169 (302)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceehhhhcc
Confidence            345789999976 579999887544  49999999999 7999999999998      899999987

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=95.71  E-value=0.009  Score=48.12  Aligned_cols=57  Identities=14%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHH-----HhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEY-----CYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H-----~~~~~~~~~~~~r~i~~   72 (186)
                      +..+-|+|||.+ |.+|.+++..+   + +|+...++.++ .+++..|.+.|     ..      +.+|++|+|
T Consensus        72 ~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~-~~i~~~l~~lH~~~~~~~------~i~h~dl~p  138 (265)
T cd08217          72 SNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRIL-TQLLLALYECHNRSDPGN------TVLHRDLKP  138 (265)
T ss_pred             CCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHH-HHHHHHHHHHhcCccccC------cceecCCCH
Confidence            445679999998 57999998764   4 79999999999 69999999999     66      999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=95.69  E-value=0.0072  Score=51.80  Aligned_cols=32  Identities=6%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         34 FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        34 f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |+..+++.++ .|++..|.+.|+.      +.+||||||
T Consensus       171 l~~~~~~~~~-~qi~~aL~~LH~~------~ivHrDiKp  202 (338)
T cd05102         171 LTMEDLICYS-FQVARGMEFLASR------KCIHRDLAA  202 (338)
T ss_pred             CCHHHHHHHH-HHHHHHHHHHHHC------CEECCCCcc
Confidence            6667788889 7999999999988      999999997

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=95.69  E-value=0.0076  Score=52.51  Aligned_cols=53  Identities=8%  Similarity=0.125  Sum_probs=46.8

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-|+|||.++.+|...+.  ..++...+..++ .||+..|.+.|+.      +.+||||+|
T Consensus       102 ~~~~lv~e~~~~~l~~~~~--~~~~~~~~~~~~-~qi~~aL~~LH~~------~ivH~Dlkp  154 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQ--MELDHERMSYLL-YQMLCGIKHLHSA------GIIHRDLKP  154 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHH--hcCCHHHHHHHH-HHHHHHHHHHhhC------CeecCCCCH
Confidence            3569999999999888775  268888999999 7999999999998      999999997

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=95.67  E-value=0.008  Score=51.53  Aligned_cols=56  Identities=11%  Similarity=0.001  Sum_probs=47.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|..... .+.|+...++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        73 ~~~~~~lv~E~~~~~~L~~~~~-~~~l~~~~~~~~~-~qi~~al~~lH~~------~ivHrdlkp  129 (324)
T cd05589          73 TEDHVCFVMEYAAGGDLMMHIH-TDVFSEPRAVFYA-ACVVLGLQYLHEN------KIVYRDLKL  129 (324)
T ss_pred             cCCEEEEEEcCCCCCcHHHHhh-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CeEecCCCH
Confidence            346789999986 578876654 2389999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=95.65  E-value=0.0098  Score=48.19  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.++ .+|..++...+ +|+..++..+. .|++..|.+.|+.      +.+|++++|
T Consensus        72 ~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~-~ql~~~l~~lh~~------~i~h~dl~p  129 (262)
T cd06613          72 RDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVC-RETLKGLAYLHET------GKIHRDIKG  129 (262)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHHhC------CceecCCCh
Confidence            456789999987 69999998875 99999999999 6999999999988      899999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=95.62  E-value=0.01  Score=51.31  Aligned_cols=54  Identities=11%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.++.+|.+++. .++|+...+..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        89 ~~~~lv~e~~~~~L~~~~~-~~~l~~~~~~~~~-~qi~~aL~~LH~~------givH~dikp  142 (342)
T cd07854          89 NSVYIVQEYMETDLANVLE-QGPLSEEHARLFM-YQLLRGLKYIHSA------NVLHRDLKP  142 (342)
T ss_pred             ceEEEEeecccccHHHHHH-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            4679999999999988875 2389999999999 7999999999988      999999986

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=95.62  E-value=0.0092  Score=50.08  Aligned_cols=56  Identities=16%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++|||.+ |.+|..++....           .++..+++.++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~al~~lH~~------~i~H~dlkp  158 (296)
T cd05095          91 SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMA-TQIASGMKYLSSL------NFVHRDLAT  158 (296)
T ss_pred             CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHH-HHHHHHHHHHHHC------CeecccCCh
Confidence            46789999988 589999887543           35667899999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=95.62  E-value=0.012  Score=47.82  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....++|||.+. .+|.+++....  .++...++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lh~~------~i~H~di~p  130 (256)
T cd05039          72 GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFA-LDVCEGMEYLEEK------NFVHRDLAA  130 (256)
T ss_pred             CCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------Cccchhccc
Confidence            567899999996 69999988765  69999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0667|consensus

Probab=95.60  E-value=0.0062  Score=58.69  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             eeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+=+||+|+|+.+|-++.+.++  .||++.|-.++ .|||..|.+.|..      ++||=|+||
T Consensus       261 ~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~-~Qil~~L~~L~~l------~IIHcDLKP  317 (586)
T KOG0667|consen  261 NHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFA-QQILTALLFLHEL------GIIHCDLKP  317 (586)
T ss_pred             cceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeccCCh
Confidence            3457999999999999999988  59999999999 7999999999988      999999998

>KOG0198|consensus

Probab=95.60  E-value=0.011  Score=52.80  Aligned_cols=64  Identities=17%  Similarity=0.083  Sum_probs=53.1

Q ss_pred             CcccccCCCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          2 KGQQEHNGNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         2 ~G~~~~~~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .|.+......+-.+.||.. |-+|.++....+ +||+..|...+ -|+|..|.++|++      +++|+|||+
T Consensus        80 ~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~yt-r~iL~GL~ylHs~------g~vH~DiK~  145 (313)
T KOG0198|consen   80 YGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYT-RQILEGLAYLHSK------GIVHCDIKP  145 (313)
T ss_pred             CCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeccCccc
Confidence            3443333334677888887 579999999988 99999999999 6999999999988      999999985

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=95.60  E-value=0.0098  Score=49.02  Aligned_cols=56  Identities=13%  Similarity=0.107  Sum_probs=48.4

Q ss_pred             CeeeEEeecccc-ccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+. .+|.+++... + .++..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        72 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~aL~~lH~~------~i~H~dl~p  130 (262)
T cd05071          72 EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMA-AQIASGMAYVERM------NYVHRDLRA  130 (262)
T ss_pred             CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHH-HHHHHHHHHHHHC------CccccccCc
Confidence            456789999884 6999988753 4 68999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=95.59  E-value=0.01  Score=48.82  Aligned_cols=57  Identities=5%  Similarity=0.025  Sum_probs=48.1

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+...+..-+.... +|+..+++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~-~ql~~~l~~LH~~------~i~H~dl~p  128 (286)
T cd07847          71 RKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKII-WQTLQAVNFCHKH------NCIHRDVKP  128 (286)
T ss_pred             eCCEEEEEEeccCccHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CceecCCCh
Confidence            346789999999766655555455 89999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=95.59  E-value=0.011  Score=48.23  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+...      . .|+..+++.++ .+++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~H~dl~p  134 (269)
T cd05044          70 LNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDIC-LDVAKGCVYLEQM------HFIHRDLAA  134 (269)
T ss_pred             CCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCh
Confidence            345789999987 67998887642      2 48889999999 7999999999988      899999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=95.58  E-value=0.011  Score=48.13  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|.+.+...+.++...+..++ .+++..|.+.|..      +.+|++|+|
T Consensus        76 ~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~H~dl~p  132 (263)
T cd06625          76 DETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYT-RQILEGVEYLHSN------MIVHRDIKG  132 (263)
T ss_pred             CCeEEEEEEECCCCcHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            35889999998 78999988866689999999999 6999999999998      999999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=95.57  E-value=0.011  Score=48.68  Aligned_cols=56  Identities=14%  Similarity=0.126  Sum_probs=49.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++.. +.++...++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~-~~l~~~~~~~i~-~~i~~~l~~lh~~------~i~H~dl~p  129 (277)
T cd06917          73 KGPRLWIIMEYAEGGSVRTLMKA-GPIAEKYISVII-REVLVALKYIHKV------GVIHRDIKA  129 (277)
T ss_pred             eCCEEEEEEecCCCCcHHHHHHc-cCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCcCH
Confidence            456789999988 8899998763 388999999999 6999999999988      999999876

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=95.57  E-value=0.011  Score=48.49  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++....          .++...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~di~p  147 (277)
T cd05032          80 TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMA-AEIADGMAYLAAK------KFVHRDLAA  147 (277)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CccccccCh
Confidence            347899999998 579998886421          36777899999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=95.57  E-value=0.012  Score=48.55  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=50.7

Q ss_pred             CeeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....++|||.++.+|.+.+....  .++...++.++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~Lh~~------~i~H~dl~~  127 (283)
T cd07830          70 NDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSII-YQILQGLAHIHKH------GFFHRDLKP  127 (283)
T ss_pred             CCcEEEEEecCCCCHHHHHHhcccccCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCh
Confidence            56789999999999999988764  78999999999 7999999999998      999999876

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=95.56  E-value=0.01  Score=48.88  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcC---CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK---EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~---kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.++.+|.+++...+   .|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~h~dl~p  128 (284)
T cd07836          70 ENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFT-YQLLKGIAFCHEN------RVLHRDLKP  128 (284)
T ss_pred             CCcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHH-HHHHHHHHHHHHC------CeeeCCCCH
Confidence            46789999999999999887543   58999999999 7999999999988      899999886

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=95.54  E-value=0.013  Score=48.06  Aligned_cols=56  Identities=11%  Similarity=0.030  Sum_probs=46.1

Q ss_pred             CeeeEEeecccc-ccHHHHHHH-----cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDE-----HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~-----~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++||+.+. .+|...+..     +. .++..+++.++ .||+..|.+.|+.      +.+||||+|
T Consensus        78 ~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlkp  140 (272)
T cd05075          78 YPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFM-TDIASGMEYLSSK------SFIHRDLAA  140 (272)
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHH-HHHHHHHHHHHHC------Ceeccccch
Confidence            346789999874 688876532     33 58999999999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=95.52  E-value=0.012  Score=49.13  Aligned_cols=56  Identities=14%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-+||||.++.+|..++.... .|+...+..++ .|++..|.+.|+.      +.+|++++|
T Consensus        88 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~-~qi~~aL~~LH~~------~i~H~dl~p  144 (302)
T cd07864          88 KGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFM-KQLLEGLNYCHKK------NFLHRDIKC  144 (302)
T ss_pred             CCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            34889999999999998888666 89999999999 6999999999999      999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0662|consensus

Probab=95.51  E-value=0.002  Score=55.13  Aligned_cols=77  Identities=10%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             EEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13596         14 FIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALV   92 (186)
Q Consensus        14 fmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~Lv   92 (186)
                      -+|++-+..||.|.|+.++ -+...+|-.+. +|+|..+-+-|++      ..+|||+||+-..-+         .+.-.
T Consensus        77 tlvfe~cdqdlkkyfdslng~~d~~~~rsfm-lqllrgl~fchsh------nvlhrdlkpqnllin---------~ngel  140 (292)
T KOG0662|consen   77 TLVFEFCDQDLKKYFDSLNGDLDPEIVRSFM-LQLLRGLGFCHSH------NVLHRDLKPQNLLIN---------RNGEL  140 (292)
T ss_pred             EEeHHHhhHHHHHHHHhcCCcCCHHHHHHHH-HHHHhhhhhhhhh------hhhhccCCcceEEec---------cCCcE
Confidence            4899999999999999998 89999999999 8999999999999      999999998533111         02223


Q ss_pred             HHhhHhHHHHhhhh
Q psy13596         93 DHLNVGVAQAYLNQ  106 (186)
Q Consensus        93 ~~Ln~gvs~~y~Nq  106 (186)
                      ...++|++.+|-=+
T Consensus       141 kladfglarafgip  154 (292)
T KOG0662|consen  141 KLADFGLARAFGIP  154 (292)
T ss_pred             EecccchhhhcCCc
Confidence            34578888776543

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=95.49  E-value=0.0084  Score=51.94  Aligned_cols=53  Identities=6%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.++.+|...+.  ..++...+..++ .||+..|.+.|+.      +.+||||||
T Consensus        95 ~~~~lv~e~~~~~l~~~~~--~~l~~~~~~~~~-~qi~~aL~~LH~~------givHrDikp  147 (355)
T cd07874          95 QDVYLVMELMDANLCQVIQ--MELDHERMSYLL-YQMLCGIKHLHSA------GIIHRDLKP  147 (355)
T ss_pred             ceeEEEhhhhcccHHHHHh--hcCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCh
Confidence            4579999999998877664  268888999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=95.49  E-value=0.011  Score=48.38  Aligned_cols=55  Identities=13%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             eeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.+ |.+|.+++... + +++..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~aL~~lH~~------~i~H~dl~p  130 (260)
T cd05073          73 EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFS-AQIAEGMAFIEQR------NYIHRDLRA  130 (260)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHH-HHHHHHHHHHHhC------CccccccCc
Confidence            5679999998 57999998763 4 79999999999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=95.48  E-value=0.01  Score=51.43  Aligned_cols=53  Identities=4%  Similarity=0.108  Sum_probs=47.0

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|||||.++.+|...+..  .|+...+..++ .|++..|.+.|+.      +.+|+||+|
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~--~l~~~~~~~~~-~ql~~aL~~LH~~------gi~H~dlkp  146 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQM--DLDHERMSYLL-YQMLCGIKHLHSA------GIIHRDLKP  146 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhh--cCCHHHHHHHH-HHHHHHHHHHHhC------CeeeCCCCH
Confidence            46799999999998887753  38999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=95.48  E-value=0.011  Score=50.16  Aligned_cols=56  Identities=11%  Similarity=0.270  Sum_probs=47.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..++...               + .++.++++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        90 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~aL~~lH~~------gi~H~dlkp  162 (314)
T cd05099          90 EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCA-YQVARGMEYLESR------RCIHRDLAA  162 (314)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHH-HHHHHHHHHHHHC------Ceeeccccc
Confidence            45789999987 57999888652               2 58888999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=95.46  E-value=0.01  Score=49.18  Aligned_cols=55  Identities=20%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...++||+.+ |.+|.+.+..+. .++...++.++ .||+..|.+.|..      +.+|++|+|
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~-~qi~~~l~~LH~~------~i~H~di~p  137 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWC-VQIAKGMSYLEEK------RLVHRDLAA  137 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHhC------CEEecccCc
Confidence            4567889876 679999888776 89999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=95.45  E-value=0.013  Score=47.41  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=51.2

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHH-hhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYC-YQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~-~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+. .+|..++...+.++..+++.++ .|++..+.+.|. .      +.+|++|+|
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~~l~~~l~~lh~~~------~~~H~~l~~  128 (264)
T cd06623          70 KEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIA-RQILKGLDYLHTKR------HIIHRDIKP  128 (264)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHhccC------CCccCCCCH
Confidence            3478999999997 8999999866689999999999 799999999999 7      999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=95.41  E-value=0.013  Score=49.10  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|..++....            .++..+++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~al~~lH~~------~i~H~dlkp  157 (295)
T cd05097          88 SDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMA-VQIASGMKYLASL------NFVHRDLAT  157 (295)
T ss_pred             CCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHH-HHHHHHHHHHHhc------CeeccccCh
Confidence            456889999987 589999886432            36778889999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=95.41  E-value=0.013  Score=49.03  Aligned_cols=56  Identities=13%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++.. ++++...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        87 ~~~~~~~v~e~~~~~~L~~~~~~-~~~~~~~~~~~~-~ql~~~l~~lH~~------~i~H~dl~p  143 (285)
T cd06648          87 VGDELWVVMEFLEGGALTDIVTH-TRMNEEQIATVC-LAVLKALSFLHAQ------GVIHRDIKS  143 (285)
T ss_pred             cCCeEEEEEeccCCCCHHHHHHh-CCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCh
Confidence            346789999988 8899998875 589999999999 6999999999998      999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=95.40  E-value=0.015  Score=46.64  Aligned_cols=56  Identities=11%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+||+.+ |.+|.+++...+.++...+..++ .|++..|.+.|..      +.+|++|+|
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dl~p  127 (254)
T cd06627          71 SDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYV-YQVLQGLAYLHEQ------GVIHRDIKA  127 (254)
T ss_pred             CCEEEEEEecCCCCcHHHHHHhccCCCHHHHHHHH-HHHHHHHHHHhhC------CcccCCCCH
Confidence            46789999988 57999999876689999999999 6999999999988      999999886

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=95.39  E-value=0.013  Score=50.70  Aligned_cols=54  Identities=11%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.++||+.+|.+|..++.. ++|+...+..++ .|++..|.+.|..      +.+|++|+|
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~-~~l~~~~~~~~~-~ql~~aL~~LH~~------gi~H~dlkp  146 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKC-QKLSDDHIQFLV-YQILRGLKYIHSA------GIIHRDLKP  146 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhc-CCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            45899999999999998873 389999999999 7999999999998      899999987

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PHA02988 hypothetical protein; Provisional

Probab=95.39  E-value=0.013  Score=49.37  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+..|.+||||.+. .+|..++..++.++..+.+.++ .+++..|.+.|+.     .+.+||+|+|
T Consensus        92 ~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~-~~i~~~l~~lH~~-----~~~~Hrdlkp  151 (283)
T PHA02988         92 DDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMA-IDCCKGLYNLYKY-----TNKPYKNLTS  151 (283)
T ss_pred             cCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHH-HHHHHHHHHHHhc-----CCCCCCcCCh
Confidence            34568899999886 5799998866689999999999 7999999999986     4778999987

>KOG0600|consensus

Probab=95.38  E-value=0.0083  Score=57.10  Aligned_cols=123  Identities=15%  Similarity=0.257  Sum_probs=88.4

Q ss_pred             eeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhH-HHHHHHHHHHHHHHH
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLE-VRRKEALSAANDLTQ   89 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e-~~rk~a~~s~~~l~~   89 (186)
                      -=|||+|.+--||--|....+ +|+..-|--+. .|+|..|++.|..      +.+|||||.-- .--+          +
T Consensus       192 siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~m-kQLl~Gl~~cH~~------gvlHRDIK~SNiLidn----------~  254 (560)
T KOG0600|consen  192 SIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYM-KQLLEGLEYCHSR------GVLHRDIKGSNILIDN----------N  254 (560)
T ss_pred             eEEEEEecccchhhhhhcCCCcccChHHHHHHH-HHHHHHHHHHhhc------CeeeccccccceEEcC----------C
Confidence            458999999999999999888 99999999999 6999999999999      99999998510 0001          2


Q ss_pred             HHHHHhhHhHHHHhhhhhhhh---------HHHHHHHHHHHHHHhhHHHHH------------------HHHHHHHHHhh
Q psy13596         90 ALVDHLNVGVAQAYLNQKKLD---------AEAKQLHTNAITFSKQTQQWL------------------SLVDNFNSALK  142 (186)
Q Consensus        90 ~Lv~~Ln~gvs~~y~Nqk~ie---------~E~K~L~~~Ta~laKqt~qW~------------------~l~~~~~~~LK  142 (186)
                      .+...-|||++..|.-...-.         =..=+|+-|+..|.--.+-|.                  .-++++..-.|
T Consensus       255 G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfk  334 (560)
T KOG0600|consen  255 GVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFK  334 (560)
T ss_pred             CCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHH
Confidence            234456899998776544321         123456677777777777774                  34666666677


Q ss_pred             hhcc--HHHHH
Q psy13596        143 EIGD--VENWA  151 (186)
Q Consensus       143 EiGD--veNWa  151 (186)
                      ..|-  ...|.
T Consensus       335 lcGSP~e~~W~  345 (560)
T KOG0600|consen  335 LCGSPTEDYWP  345 (560)
T ss_pred             HhCCCChhccc
Confidence            6663  23454

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=95.38  E-value=0.011  Score=51.26  Aligned_cols=54  Identities=9%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.++|++.+|.+|..++. +++|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        95 ~~~~lv~~~~~~~L~~~~~-~~~l~~~~~~~i~-~qi~~aL~~LH~~------~ivH~dlkp  148 (345)
T cd07877          95 NDVYLVTHLMGADLNNIVK-CQKLTDDHVQFLI-YQILRGLKYIHSA------DIIHRDLKP  148 (345)
T ss_pred             ccEEEEehhcccCHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeecCCCh
Confidence            4568999999999999876 3489999999999 7999999999998      999999886

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=95.37  E-value=0.013  Score=49.36  Aligned_cols=57  Identities=11%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|++||.++ .+|..++... + .++...+..++ .|+++.|.+.|..      +.+|+||+|
T Consensus        70 ~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~l~~~L~~LH~~------~ivH~dlk~  129 (314)
T cd08216          70 VDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFIL-KDVLNALDYIHSK------GFIHRSVKA  129 (314)
T ss_pred             cCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCc
Confidence            4567899999986 7898888864 4 79999999999 6999999999998      999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=95.35  E-value=0.013  Score=47.76  Aligned_cols=57  Identities=9%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-++|||.+ |.+|.+++... + .|+...++.++ .++++.|.+.|+.      +.+|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~i~~al~~lH~~------~i~h~dl~~  132 (261)
T cd05148          73 VGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMA-CQVAEGMAYLEEQ------NSIHRDLAA  132 (261)
T ss_pred             cCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeccccCc
Confidence            446778999988 56999988764 3 79999999999 6999999999988      899999986

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=95.32  E-value=0.017  Score=47.82  Aligned_cols=57  Identities=18%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+. .+|.+++....          .++.++++.++ .+++..|.+.|+.      +.+|++++|
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~~vH~dlkp  147 (277)
T cd05062          80 QGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMA-GEIADGMAYLNAN------KFVHRDLAA  147 (277)
T ss_pred             CCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCcch
Confidence            4467899999864 78998886532          25667899999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=95.32  E-value=0.014  Score=47.47  Aligned_cols=57  Identities=12%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.|+|||.+ |.+|...+... + .|+...++.++ .++++.|.+.|+.      +.+|++|+|
T Consensus        69 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~al~~lH~~------~i~H~dl~p  128 (255)
T cd08219          69 ADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWF-VQMCLGVQHIHEK------RVLHRDIKS  128 (255)
T ss_pred             ECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHhhC------CcccCCCCc
Confidence            456889999998 67998887654 3 69999999999 7999999999998      999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=95.32  E-value=0.012  Score=47.87  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-+||||.++ .+|..++.... .|+...+..++ .|+++.|.+.|..     .+.+|++|+|
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~-----~~i~H~dl~~  129 (265)
T cd06605          71 NGDISICMEYMDGGSLDKILKEVQGRIPERILGKIA-VAVLKGLTYLHEK-----HKIIHRDVKP  129 (265)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHH-HHHHHHHHHHcCC-----CCeecCCCCH
Confidence            367899999998 99999999874 89999999999 6999999999993     3999999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.31  E-value=0.0072  Score=59.03  Aligned_cols=54  Identities=9%  Similarity=0.040  Sum_probs=48.3

Q ss_pred             eeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .-+++||..|.+|.+++.... .|+...++.+. .||+..|.+.|+.      +++||||||
T Consensus        54 ~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~-~qi~~al~~lH~~------gIvHrDlKP  108 (793)
T PLN00181         54 SIVRALECEDVSLRQWLDNPDRSVDAFECFHVF-RQIVEIVNAAHSQ------GIVVHNVRP  108 (793)
T ss_pred             hhhhhhccCCccHHHHHhcccccccHHHHHHHH-HHHHHHHHHHHhC------CeeeccCCc
Confidence            346668889999999998656 79999999999 7999999999988      999999998

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=95.29  E-value=0.014  Score=47.58  Aligned_cols=57  Identities=11%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-++|||.+ |.+|.+++..   .+ .++..++..++ .|+++.|.+.|..      +.+|++|+|
T Consensus        73 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~dl~p  134 (267)
T cd08229          73 EDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYF-VQLCSALEHMHSR------RVMHRDIKP  134 (267)
T ss_pred             eCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            346788999988 4799998874   23 68999999999 6999999999988      999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=95.29  E-value=0.017  Score=47.85  Aligned_cols=57  Identities=16%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHc----------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEH----------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVI   70 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~----------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i   70 (186)
                      ...+.++|||.+. .+|.+++...                . .++...++.++ .+|+..|.+.|+.      +.+|++|
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~al~~lH~~------~i~H~dl  150 (283)
T cd05090          78 QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIA-IQIAAGMEYLSSH------FFVHKDL  150 (283)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHH-HHHHHHHHHHHhc------Ceehhcc
Confidence            3456799999885 6999987522                2 47788889999 7999999999998      8999999


Q ss_pred             hh
Q psy13596         71 IG   72 (186)
Q Consensus        71 ~~   72 (186)
                      +|
T Consensus       151 kp  152 (283)
T cd05090         151 AA  152 (283)
T ss_pred             cc
Confidence            87

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=95.27  E-value=0.014  Score=48.11  Aligned_cols=56  Identities=16%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             CeeeEEeeccccccHHHHHHHc--C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEH--K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~--~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+..+|.+.+...  + .|+...+..++ .|++..|.+.|..      +.+|++++|
T Consensus        71 ~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~i~H~dl~p  129 (285)
T cd07861          71 ESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYL-YQILQGILFCHSR------RVLHRDLKP  129 (285)
T ss_pred             CCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHH-HHHHHHHHHHHhC------CeeecCCCH
Confidence            4678999999988888887643  2 69999999999 6999999999998      999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=95.26  E-value=0.014  Score=49.07  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             eeeEEeeccc-cccHHHHHHHc------------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEH------------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVI   70 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~------------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i   70 (186)
                      ..-+||||.+ |.+|.++....                  . .++..+++.++ .|++..|.+.|..      +.+|+||
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~al~~lH~~------~ivH~dl  164 (304)
T cd05096          92 DPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVA-LQIASGMKYLSSL------NFVHRDL  164 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHH-HHHHHHHHHHHHC------CccccCc
Confidence            4579999988 67998887542                  1 36777889999 7999999999998      8999999


Q ss_pred             hh
Q psy13596         71 IG   72 (186)
Q Consensus        71 ~~   72 (186)
                      +|
T Consensus       165 kp  166 (304)
T cd05096         165 AT  166 (304)
T ss_pred             ch
Confidence            87

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=95.23  E-value=0.013  Score=48.91  Aligned_cols=56  Identities=11%  Similarity=0.158  Sum_probs=48.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|..++...+ .|+..+++.+. .|++..|.+.|..      +.+|++++|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~-~ql~~~l~~lH~~------~i~H~dlkp  138 (292)
T cd06644          81 DGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVIC-RQMLEALQYLHSM------KIIHRDLKA  138 (292)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHhcC------CeeecCCCc
Confidence            34678999988 477888777666 89999999999 7999999999988      999999886

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=95.20  E-value=0.021  Score=46.12  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=49.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.+.+... + .++...++.++ .++++.|.+.|..      +.+|++++|
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~H~dl~~  129 (257)
T cd08225          70 ENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWF-VQISLGLKHIHDR------KILHRDIKS  129 (257)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccccCCH
Confidence            346789999998 78999988764 3 69999999999 7999999999988      999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=95.19  E-value=0.018  Score=48.14  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+ |.+|...+...+          .++.+.++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~H~dikp  147 (288)
T cd05061          80 KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA-AEIADGMAYLNAK------KFVHRDLAA  147 (288)
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CCcCCCCCh
Confidence            345789999997 589999987422          24556788888 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=95.18  E-value=0.017  Score=47.90  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|.++.. .++++...+..++ .+++..|.+.|+.      +.+|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~i~-~~~l~~~~~~~~~-~~l~~~l~~lh~~------~ivH~dl~p  129 (277)
T cd06640          73 KGTKLWIIMEYLGGGSALDLLR-AGPFDEFQIATML-KEILKGLDYLHSE------KKIHRDIKA  129 (277)
T ss_pred             ECCEEEEEEecCCCCcHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CccCcCCCh
Confidence            346899999999 678988775 3488999999999 6999999999988      999999886

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=95.13  E-value=0.019  Score=47.46  Aligned_cols=56  Identities=14%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc----------------CCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH----------------KEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~----------------~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|.+++..+                ..++..+++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        80 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~al~~lH~~------~i~H~dlkp  152 (283)
T cd05048          80 EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIA-IQIAAGMEYLSSH------HFVHRDLAA  152 (283)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHH-HHHHHHHHHHHhC------Ceecccccc
Confidence            35678999987 57898888754                247788899999 7999999999999      899999987

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=95.11  E-value=0.019  Score=46.69  Aligned_cols=56  Identities=11%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CeeeEEeecccc-ccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+. .+|..++..+   + .|+...++.++ .+++..|.+.|+.      +.+|++|+|
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~dl~p  134 (267)
T cd08224          74 NNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYF-VQLCSALEHMHSK------RIMHRDIKP  134 (267)
T ss_pred             CCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHH-HHHHHHHHHHHhC------CEecCCcCh
Confidence            357899999884 6999988643   3 69999999999 6999999999998      999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=95.11  E-value=0.019  Score=47.15  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             eeeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.++|||.++.+|.+.+..+.  .|+...++.++ .|++..|.+.|+.      +.+|++++|
T Consensus        79 ~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~i~~al~~LH~~------~i~h~~l~~  135 (287)
T cd07838          79 LKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLM-RQLLRGVDFLHSH------RIVHRDLKP  135 (287)
T ss_pred             ceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeeeccCCh
Confidence            3489999999999999888765  69999999999 7999999999999      899999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=95.10  E-value=0.02  Score=46.15  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.++ .+|.+++..++ .++...+..++ .+++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~-~~l~~~l~~lh~~------~i~H~dl~~  127 (256)
T cd06612          70 NTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAIL-YQTLKGLEYLHSN------KKIHRDIKA  127 (256)
T ss_pred             CCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCc
Confidence            467889999986 79999998777 89999999999 7999999999998      899999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=95.08  E-value=0.019  Score=47.88  Aligned_cols=54  Identities=13%  Similarity=0.030  Sum_probs=46.4

Q ss_pred             eeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +.++||+.+ |.+|.+++..++ .++...++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        82 ~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~-~qi~~~l~~lH~~------~iiH~dlkp  137 (279)
T cd05111          82 SLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWC-VQIAKGMYYLEEH------RMVHRNLAA  137 (279)
T ss_pred             ccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHHC------CEeccccCc
Confidence            345677654 689999988776 89999999999 7999999999988      899999987

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=95.08  E-value=0.015  Score=48.00  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++ .+|.+++. .+.++...+..++ .+++..+.+.|+.      +.+|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~-~~i~~~l~~lH~~------~ivH~dl~p  129 (277)
T cd06642          73 KGTKLWIIMEYLGGGSALDLLK-PGPLEETYIATIL-REILKGLDYLHSE------RKIHRDIKA  129 (277)
T ss_pred             cCCceEEEEEccCCCcHHHHhh-cCCCCHHHHHHHH-HHHHHHHHHHhcC------CeeccCCCh
Confidence            4567899999995 78888875 3489999999999 6999999999988      999999886

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=95.07  E-value=0.018  Score=49.67  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=47.7

Q ss_pred             eeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-++||+.+|.+|..++. .+.|+...+..++ .|+++.|.+.|+.      +.+|++|+|
T Consensus        83 ~~~~lv~e~~~~~L~~~~~-~~~~~~~~~~~~~-~ql~~aL~~LH~~------~iiH~dl~p  136 (328)
T cd07856          83 EDIYFVTELLGTDLHRLLT-SRPLEKQFIQYFL-YQILRGLKYVHSA------GVVHRDLKP  136 (328)
T ss_pred             CcEEEEeehhccCHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            4678999999999999886 2378988999999 6999999999999      899999886

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=95.06  E-value=0.02  Score=47.68  Aligned_cols=56  Identities=7%  Similarity=0.237  Sum_probs=47.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHH---------------cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDE---------------HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~---------------~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|..++..               .+ +|+...++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        88 ~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~al~~LH~~------~ivH~dlkp  160 (293)
T cd05053          88 EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFA-YQVARGMEFLASK------KCIHRDLAA  160 (293)
T ss_pred             CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHC------Cccccccce
Confidence            45679999987 5799988863               23 68899999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=95.06  E-value=0.019  Score=49.37  Aligned_cols=57  Identities=7%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVII   71 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~   71 (186)
                      ...+.|+|||.+ |.+|..++...               . +++..+++.++ .|++..|.+.|..      +.+|+||+
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~al~~LH~~------givH~dlk  161 (334)
T cd05100          89 QDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCA-YQVARGMEYLASQ------KCIHRDLA  161 (334)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHH-HHHHHHHHHHHHC------Ceeccccc
Confidence            345789999998 46998887642               2 47778889999 7999999999998      99999998


Q ss_pred             h
Q psy13596         72 G   72 (186)
Q Consensus        72 ~   72 (186)
                      |
T Consensus       162 p  162 (334)
T cd05100         162 A  162 (334)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=95.06  E-value=0.018  Score=47.37  Aligned_cols=56  Identities=16%  Similarity=0.057  Sum_probs=49.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.++|||.+ |.+|...+..+ .++...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~-~ql~~~l~~lh~~------~i~h~dl~p  126 (274)
T cd06609          70 KGSKLWIIMEYCGGGSCLDLLKPG-KLDETYIAFIL-REVLLGLEYLHEE------GKIHRDIKA  126 (274)
T ss_pred             ECCeEEEEEEeeCCCcHHHHHhhc-CCCHHHHHHHH-HHHHHHHHHHHhC------CcccCCCCH
Confidence            347889999988 57999998854 89999999999 6999999999998      899999886

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=95.05  E-value=0.019  Score=48.52  Aligned_cols=55  Identities=9%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|..+.. .+.|+...++.++ .|++..|.+.|+.      +.+|++|+|
T Consensus        89 ~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~i~-~ql~~aL~~LH~~------gi~H~dLkp  144 (296)
T cd06654          89 GDELWVVMEYLAGGSLTDVVT-ETCMDEGQIAAVC-RECLQALEFLHSN------QVIHRDIKS  144 (296)
T ss_pred             CCEEEEeecccCCCCHHHHHH-hcCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            46889999988 789999875 3378999999999 6999999999998      999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=95.04  E-value=0.024  Score=47.27  Aligned_cols=57  Identities=12%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHc------------------------CCCCcchhhcccchhHHHHHHHHHHhhhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEH------------------------KEFSLKNTLTITDFPILKVMSMEYCYQRNWQK   63 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~------------------------~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~   63 (186)
                      ...+.|+|||.+. .+|.+++...                        ..|+..+++.++ .|++..|.+.|+.      
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~~i~~~l~~LH~~------  146 (290)
T cd05045          74 QDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFA-WQISRGMQYLAEM------  146 (290)
T ss_pred             cCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHH-HHHHHHHHHHHHC------
Confidence            3467899999875 7898887642                        147788999999 7999999999988      


Q ss_pred             hHHHhhhhh
Q psy13596         64 QAVTSVIIG   72 (186)
Q Consensus        64 ~~~~r~i~~   72 (186)
                      +.+|++|+|
T Consensus       147 ~ivH~dikp  155 (290)
T cd05045         147 KLVHRDLAA  155 (290)
T ss_pred             Ceehhhhhh
Confidence            999999987

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=94.98  E-value=0.02  Score=46.96  Aligned_cols=57  Identities=23%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CC--CcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EF--SLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf--~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|...+.... .+  +..+++.++ .|++..|.+.|+.      +.+|++++|
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~i~h~dl~p  136 (268)
T cd06624          76 ENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYT-KQILEGLKYLHDN------QIVHRDIKG  136 (268)
T ss_pred             cCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHH-HHHHHHHHHHHHC------CEeecCCCH
Confidence            346789999987 689999887543 55  888888888 6999999999988      999999886

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=94.91  E-value=0.022  Score=47.93  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC----------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK----------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~----------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.+ |.+|.+++..+.                .++.++++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~al~~lH~~------~ivH~dlkp  147 (297)
T cd05089          75 RGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFA-SDVATGMQYLSEK------QFIHRDLAA  147 (297)
T ss_pred             CCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCcCCc
Confidence            35678999986 568988886432                47888999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=94.91  E-value=0.023  Score=47.24  Aligned_cols=56  Identities=5%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+. .+|.+++..++ .|+...++.++ .+++..|.+.|+.      +.+|++++|
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~-~~i~~~L~~lH~~------gi~H~dl~p  144 (286)
T cd06614          87 GDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVC-REVLQGLEYLHSQ------NVIHRDIKS  144 (286)
T ss_pred             CCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeCCCCh
Confidence            368899999997 99999999888 89999999999 6999999999998      999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=94.90  E-value=0.021  Score=48.31  Aligned_cols=56  Identities=13%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++.|+|||.+ |.+|.++.. .++++...+..++ .|++..+.+.|..      +.+|++|+|
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~-~ql~~~l~~lH~~------givH~dl~p  144 (292)
T cd06657          88 VGDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVC-LAVLKALSVLHAQ------GVIHRDIKS  144 (292)
T ss_pred             eCCEEEEEEecCCCCcHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            357899999998 568888764 3489999999999 7999999999998      999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=94.90  E-value=0.023  Score=46.05  Aligned_cols=55  Identities=9%  Similarity=0.019  Sum_probs=48.7

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.+ |.+|...+....  .++..++..++ .|++..|.+.|..      +.+|++|+|
T Consensus        68 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~qi~~~L~~lH~~------~i~H~di~p  125 (257)
T cd05040          68 HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYA-VQIANGMRYLESK------RFIHRDLAA  125 (257)
T ss_pred             CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHH-HHHHHHHHHHHhC------CccccccCc
Confidence            6779999987 789999887654  68999999999 7999999999998      999999886

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=94.89  E-value=0.021  Score=58.33  Aligned_cols=63  Identities=11%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHc----CCCCcchhhcccchhHHHHHHHHHHhh-hhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEH----KEFSLKNTLTITDFPILKVMSMEYCYQ-RNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~----~kf~~ktVl~la~~~ml~~l~~~H~~~-~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+. .+|..++..+    +.|+...|+.|+ .||+..|.+.|+.. ....+.++|+||||
T Consensus        85 ~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia-~QIL~ALaYLHs~g~~~~~k~IVHRDLKP  153 (1021)
T PTZ00266         85 ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDIT-RQLLHALAYCHNLKDGPNGERVLHRDLKP  153 (1021)
T ss_pred             CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHhcccccccCCceeccCcH
Confidence            3456799999985 6999888753    379999999999 79999999999850 00013599999998

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=94.88  E-value=0.017  Score=48.75  Aligned_cols=54  Identities=17%  Similarity=0.058  Sum_probs=47.0

Q ss_pred             eeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +.++||+.+. .+|.+.+..+. .|+.+.++.++ .||+..|.+.|+.      +.+|++|+|
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~-~qi~~~L~~LH~~------~ivH~dikp  137 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWC-VQIAKGMMYLEER------RLVHRDLAA  137 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHhhc------Ceecccccc
Confidence            4668888774 67888888777 89999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=94.88  E-value=0.027  Score=45.89  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....++||+.+ |.+|.+++...+.|+...++.+. .|++..|.+.|+.      +.+|++|+|
T Consensus        75 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~ql~~al~~LH~~------~i~H~~i~~  131 (268)
T cd06630          75 DSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYT-EQLLRGLSYLHEN------QIIHRDVKG  131 (268)
T ss_pred             CCeEEEEEeccCCCcHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            34567888864 58999999866689999999999 6999999999999      999999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG0583|consensus

Probab=94.87  E-value=0.019  Score=52.08  Aligned_cols=78  Identities=6%  Similarity=0.049  Sum_probs=58.1

Q ss_pred             CeeeEEeeccccc-cHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13596         10 NSYRFIIISKFGS-DLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLT   88 (186)
Q Consensus        10 ~~yrfmVmerlG~-dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~   88 (186)
                      ..+-|||||.+.. ||.+.+...+++++...-.+- .|+++.+.+.|+.      +.+|||+|+--...-     .    
T Consensus        92 ~~~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F-~Qlisav~y~H~~------gi~HRDLK~ENilld-----~----  155 (370)
T KOG0583|consen   92 PTKIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYF-RQLISAVAYCHSR------GIVHRDLKPENILLD-----G----  155 (370)
T ss_pred             CCeEEEEEEecCCccHHHHHHHcCCCChHHHHHHH-HHHHHHHHHHHhC------CEeeCCCCHHHEEec-----C----
Confidence            3458999999875 888888876699997777788 6999999999999      999999987211100     0    


Q ss_pred             H-HHHHHhhHhHHHHh
Q psy13596         89 Q-ALVDHLNVGVAQAY  103 (186)
Q Consensus        89 ~-~Lv~~Ln~gvs~~y  103 (186)
                      + .-+...|||++...
T Consensus       156 ~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen  156 NEGNLKLSDFGLSAIS  171 (370)
T ss_pred             CCCCEEEecccccccc
Confidence            0 12444678888776

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=94.85  E-value=0.022  Score=45.16  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             eeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...++||+.++ .+|.+++.... .++...+..++ .|++..|.+.|..      +.+|++|+|
T Consensus        70 ~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~-~~i~~~l~~lh~~------~i~h~dl~p  126 (253)
T cd05122          70 DELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVC-KELLKGLEYLHSN------GIIHRDIKA  126 (253)
T ss_pred             CeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHH-HHHHHHHHHhhcC------CEecCCCCH
Confidence            67899999998 99999998775 89999999999 6999999999998      899999876

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0605|consensus

Probab=94.83  E-value=0.025  Score=54.01  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             ccCCCeeeEEeeccc-cccHHHHHHHcCCCCcc-hhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          6 EHNGNSYRFIIISKF-GSDLQKLLDEHKEFSLK-NTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         6 ~~~~~~yrfmVmerl-G~dL~~l~~~~~kf~~k-tVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+...+|=|||||-| |-|+-.|+..-+.|++- |=+-||  .|+-.|+.+|+.      +++||||||
T Consensus       209 sFQD~~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYia--E~vlAI~~iH~~------gyIHRDIKP  269 (550)
T KOG0605|consen  209 SFQDKEYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIA--ETVLAIESIHQL------GYIHRDIKP  269 (550)
T ss_pred             EecCCCeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHH--HHHHHHHHHHHc------CcccccCCh
Confidence            455678999999988 89999999977777754 445566  799999999999      999999998

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=94.79  E-value=0.027  Score=45.34  Aligned_cols=56  Identities=11%  Similarity=0.084  Sum_probs=48.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|...+...   + .|+...++.++ .+++..|.+.|..      +.+|++|+|
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~l~~al~~lh~~------~i~h~~l~~  131 (256)
T cd08530          71 GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIF-IQLLRGLQALHEQ------KILHRDLKS  131 (256)
T ss_pred             CCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHhhC------CcccCCCCc
Confidence            47789999988 89999988752   3 68999999999 6999999999988      999999886

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PHA03210 serine/threonine kinase US3; Provisional

Probab=94.75  E-value=0.019  Score=53.24  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.||||+.++.+|...+....     .+..+.+..|+ .|++..|.+.|..      +.+||||||
T Consensus       235 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~-~ql~~aL~yLH~~------gIiHrDLKP  295 (501)
T PHA03210        235 EANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIM-KQLLCAVEYIHDK------KLIHRDIKL  295 (501)
T ss_pred             CCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            46789999999999888765432     23455677788 6999999999998      999999997

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=94.75  E-value=0.028  Score=44.96  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++-++|||.+ |.+|...+...   + .|+..+++.++ .+++..|.+.|..      +..|++++|
T Consensus        71 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~-~~i~~~l~~lh~~------~~~H~dl~~  131 (258)
T cd08215          71 KGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWF-VQLCLALKYLHSR------KILHRDIKP  131 (258)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHH-HHHHHHHHHHHhC------CEecccCCh
Confidence            37889999988 57999998864   4 79999999999 7999999999998      999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=94.74  E-value=0.026  Score=46.45  Aligned_cols=57  Identities=9%  Similarity=-0.057  Sum_probs=46.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|..+.....     .++..+++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        66 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~i~H~dlkp  128 (269)
T cd05087          66 EVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMA-CEIALGLLHLHKN------NFIHSDLAL  128 (269)
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHH-HHHHHHHHHHHHC------CEeccccCc
Confidence            346789999987 478988876432     35667888899 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=94.72  E-value=0.024  Score=46.78  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|++++.. |.+|...+..+.        .|+..+++.++ .++++.|.+.|+.      +.+|++|+|
T Consensus        81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~-~~i~~~l~~LH~~------~i~H~di~p  145 (280)
T cd05043          81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMA-IQIACGMSYLHKR------GVIHKDIAA  145 (280)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHH-HHHHHHHHHHHHC------CEeecccCH
Confidence            45778888876 589999887642        48999999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=94.71  E-value=0.03  Score=46.55  Aligned_cols=56  Identities=18%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC---------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK---------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~---------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+ |.+|..++...+               .++..+++.++ .|++..+.+.|+.      +.+|++|+|
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~al~~LH~~------~i~H~dlkp  150 (280)
T cd05092          79 GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIA-SQIASGMVYLASL------HFVHRDLAT  150 (280)
T ss_pred             CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHH-HHHHHHHHHHHHC------CeecccccH
Confidence            45679999987 578988886532               48889999999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=94.71  E-value=0.021  Score=50.51  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         33 EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        33 kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++...++.++ .|+++.|.+.|+.      +.+|+||||
T Consensus       210 ~l~~~~~~~~~-~qi~~~l~~lH~~------~ivH~Dlkp  242 (375)
T cd05104         210 ALDTEDLLSFS-YQVAKGMSFLASK------NCIHRDLAA  242 (375)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHC------CeeccCCch
Confidence            35667788899 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=94.68  E-value=0.02  Score=48.38  Aligned_cols=56  Identities=11%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-+||||.+..+|..++..+. .++...++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        87 ~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~~~-~ql~~~L~~LH~~------~i~H~dl~p  143 (307)
T cd06607          87 EHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAIC-HGALQGLAYLHSH------ERIHRDIKA  143 (307)
T ss_pred             CCeEEEEHHhhCCCHHHHHHHcccCCCHHHHHHHH-HHHHHHHHHHHHC------CceecCCCc
Confidence            35678999999999999988776 89999999999 6999999999988      899999886

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=94.68  E-value=0.025  Score=47.86  Aligned_cols=55  Identities=9%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|+|||.+ |.+|..++. ...|+...++.++ .||+..|.+.|+.      +.+|++|+|
T Consensus        90 ~~~~~iv~e~~~~~~L~~~~~-~~~~~~~~~~~~~-~qi~~~L~~LH~~------~ivH~dl~p  145 (297)
T cd06659          90 GEELWVLMEFLQGGALTDIVS-QTRLNEEQIATVC-ESVLQALCYLHSQ------GVIHRDIKS  145 (297)
T ss_pred             CCeEEEEEecCCCCCHHHHHh-hcCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            46789999988 478888765 3479999999999 6999999999998      899999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=94.60  E-value=0.019  Score=50.87  Aligned_cols=32  Identities=9%  Similarity=0.152  Sum_probs=28.8

Q ss_pred             CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         34 FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        34 f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |+...++.++ .||++.|.+.|+.      +.+||||+|
T Consensus       209 l~~~~~~~i~-~qi~~aL~yLH~~------giiHrDLkp  240 (374)
T cd05106         209 LDLDDLLRFS-SQVAQGMDFLASK------NCIHRDVAA  240 (374)
T ss_pred             cCHHHHHHHH-HHHHHHHHHHHHC------CEEeccCch
Confidence            6667788899 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=94.53  E-value=0.025  Score=46.36  Aligned_cols=58  Identities=16%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+|||.+ |.+|.+++..   .+ .|+...++.++ .|++..|.+.|+.     .+.+|++|+|
T Consensus        80 ~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~-----~~i~H~dl~~  142 (269)
T cd08528          80 ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIF-VQMVLALRYLHKE-----KRIVHRDLTP  142 (269)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHhccC-----CceeecCCCH
Confidence            456889999987 6788887753   34 79999999999 7999999999976     4789999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=94.49  E-value=0.035  Score=45.70  Aligned_cols=56  Identities=9%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.|||||-++.++...+.... .++...+..++ .|++..|.+.|+.      +.+|+++++
T Consensus        72 ~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~dl~~  128 (288)
T cd07833          72 KGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYI-WQLLQAIAYCHSH------NIIHRDIKP  128 (288)
T ss_pred             CCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CeecCCCCH
Confidence            56899999999988777666655 89999999999 7999999999998      899999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=94.44  E-value=0.034  Score=45.37  Aligned_cols=56  Identities=9%  Similarity=0.068  Sum_probs=47.2

Q ss_pred             CeeeEEeecccc-ccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+. .+|.++...   ++ .++...++.++ .++++.|.+.|+.      +.+|++|+|
T Consensus        74 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~H~dl~~  134 (267)
T cd08228          74 DNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYF-VQLCSAVEHMHSR------RVMHRDIKP  134 (267)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHH-HHHHHHHHHHhhC------CeeCCCCCH
Confidence            357789999886 588887763   33 58999999999 7999999999988      999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=94.43  E-value=0.032  Score=48.23  Aligned_cols=52  Identities=12%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             eeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..|+||+.++.+|+.+..  ..|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        94 ~~~lv~e~~~~~l~~~~~--~~~~~~~~~~~~-~qi~~aL~~LH~~------~i~H~dlkp  145 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMG--HPLSEDKVQYLV-YQMLCGLKYIHSA------GIIHRDLKP  145 (342)
T ss_pred             eEEEEecccccCHHHHHc--CCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            459999999998887642  389999999999 7999999999998      899999986

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=94.42  E-value=0.033  Score=46.00  Aligned_cols=56  Identities=11%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+. .+|........    .++...++.++ .|++..|.+.|+.      +.+|+||+|
T Consensus        67 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~i~~al~~lH~~------~i~H~dikp  127 (268)
T cd05086          67 AIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMA-CEIAAGVTHMHKH------NFLHSDLAL  127 (268)
T ss_pred             CCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHH-HHHHHHHHHHHHC------CeeccCCcc
Confidence            457899999985 68988877542    35667788888 6999999999988      899999987

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0658|consensus

Probab=94.38  E-value=0.015  Score=53.20  Aligned_cols=57  Identities=9%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CeeeEEeeccccccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGL   73 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~   73 (186)
                      .-|-=+|||-+..+|....+.   ++ ++|..-|-..+ .|++..|.+.|..      +..||||||+
T Consensus        94 ~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt-~Qlfrgl~yLh~~------~IcHRDIKPq  154 (364)
T KOG0658|consen   94 EVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYT-YQLFRGLAYLHSH------GICHRDIKPQ  154 (364)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHH-HHHHHHHHHHHhc------CcccCCCChh
Confidence            347789999999999999885   46 89999999999 7999999999999      9999999995

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=94.36  E-value=0.039  Score=44.67  Aligned_cols=57  Identities=11%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc---CCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH---KEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~---~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++||+.+ |.+|..++...   +.|+...+..+. .|++..|.+.|+.      +.+|++++|
T Consensus        70 ~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ql~~al~~lh~~------~i~h~~l~p  130 (267)
T cd06610          70 VGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVL-KEVLKGLEYLHSN------GQIHRDIKA  130 (267)
T ss_pred             eCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            346789999999 78999998764   269999999999 7999999999988      999999886

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=94.31  E-value=0.035  Score=45.59  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC--------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK--------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~--------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.+||||.+ |.+|.+.....+              +|+...++.+. .+++..+.+.|..      +.+|++|+|
T Consensus        80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~l~~lH~~------~i~h~dlkp  150 (280)
T cd05049          80 GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIA-VQIASGMVYLASQ------HFVHRDLAT  150 (280)
T ss_pred             CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHH-HHHHHHHHHHhhC------Ceecccccc
Confidence            36789999987 688988886432              47888899999 6999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=94.29  E-value=0.042  Score=45.72  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=48.2

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.+. .+|.+.+..++.|+..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~-~qi~~al~~lH~~------~i~H~dl~p  133 (290)
T cd05613          77 DTKLHLILDYINGGELFTHLSQRERFKEQEVQIYS-GEIVLALEHLHKL------GIIYRDIKL  133 (290)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            356789999984 6888887766689999999999 6999999999988      999999886

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=94.26  E-value=0.039  Score=46.93  Aligned_cols=53  Identities=19%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             eEEeec-cccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         13 RFIIIS-KFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        13 rfmVme-rlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++||+ .-|.+|.+.+..+. .++...++.++ .|++..|.+.|+.      +.+||||+|
T Consensus        83 ~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~-~qi~~~L~~LH~~------~iiH~dlkp  137 (316)
T cd05108          83 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC-VQIAKGMNYLEER------RLVHRDLAA  137 (316)
T ss_pred             ceeeeecCCCCCHHHHHHhccccCCHHHHHHHH-HHHHHHHHHHHhc------Ceeccccch
Confidence            345554 45678888888776 89999999999 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0589|consensus

Probab=94.25  E-value=0.029  Score=52.32  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=65.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHH-cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh-hHHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDE-HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG-LEVRRKEALSAA   84 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~-~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~-~e~~rk~a~~s~   84 (186)
                      ++-|=++||+.+ |.||-++..+ +| -|+++.++.-- +||+..+.+.|..      ..+|||+|. .....+      
T Consensus        75 ~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~-~Q~~~av~ylH~~------~iLHRDlK~~Nifltk------  141 (426)
T KOG0589|consen   75 DGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWF-VQILLAVNYLHEN------RVLHRDLKCANIFLTK------  141 (426)
T ss_pred             CCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHH-HHHHHHHHHHHhh------hhhcccchhhhhhccc------
Confidence            345688999988 6898888775 45 79999999999 7999999999966      999999986 444444      


Q ss_pred             HHHHHHHHHHhhHhHHHHhhhhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYLNQK  107 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~Nqk  107 (186)
                          +..|..=|||+|++-.+..
T Consensus       142 ----~~~VkLgDfGlaK~l~~~~  160 (426)
T KOG0589|consen  142 ----DKKVKLGDFGLAKILNPED  160 (426)
T ss_pred             ----cCceeecchhhhhhcCCch
Confidence                5556667899998877665

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=94.17  E-value=0.042  Score=46.41  Aligned_cols=56  Identities=11%  Similarity=0.156  Sum_probs=48.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++.. +.++...++.++ .+++..|.+.|+.      +.+|++++|
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~-~~l~~~L~~LH~~------~i~H~dL~p  143 (297)
T cd06656          87 VGDELWVVMEYLAGGSLTDVVTE-TCMDEGQIAAVC-RECLQALDFLHSN------QVIHRDIKS  143 (297)
T ss_pred             cCCEEEEeecccCCCCHHHHHHh-CCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            456889999998 7899988753 368888999999 6999999999998      999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=94.11  E-value=0.055  Score=44.60  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=46.4

Q ss_pred             CCeeeEEeeccccc-cHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGS-DLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~-dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|||||.+.. +|..+....+.++...++.++ .|++..|.+.|+.      +.+|++++|
T Consensus        71 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~-~~i~~~l~~LH~~------~i~h~~l~p  128 (286)
T cd07846          71 RKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYL-FQILRGIEFCHSH------NIIHRDIKP  128 (286)
T ss_pred             cCCeEEEEEecCCccHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CccccCCCH
Confidence            45688999998875 455444433389999999999 7999999999988      899999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=94.10  E-value=0.042  Score=51.13  Aligned_cols=54  Identities=9%  Similarity=0.113  Sum_probs=46.5

Q ss_pred             eeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +-+||||.+ |.+|.+.+...   + .|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus       113 ~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~-~qll~aL~~lH~~------~IiHrDLKP  171 (496)
T PTZ00283        113 MIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLF-IQVLLAVHHVHSK------HMIHRDIKS  171 (496)
T ss_pred             EEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCCCCH
Confidence            568999987 57898877642   3 69999999999 7999999999999      999999997

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=94.06  E-value=0.051  Score=41.05  Aligned_cols=55  Identities=16%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             eeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||..+ .+|..++..+. .++...+..++ .++++.+.+.|..      +.+|.++++
T Consensus        64 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~~~H~dl~~  120 (215)
T cd00180          64 NHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRIL-LQILEGLEYLHSN------GIIHRDLKP  120 (215)
T ss_pred             CeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeccCCCH
Confidence            68999999999 99999998775 78999999999 6999999999999      999999876

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=93.88  E-value=0.068  Score=43.27  Aligned_cols=57  Identities=16%  Similarity=0.161  Sum_probs=49.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +....++|||.+ |.+|.+++...+.++...+..++ .++++.|.+.|+.      +.+|+++++
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~-~~i~~~l~~lh~~------~i~H~dl~~  127 (264)
T cd06626          70 HREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYT-LQLLEGLAYLHSH------GIVHRDIKP  127 (264)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhcCCCChHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            346788999987 68999998865578999999999 6999999999998      899999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=93.75  E-value=0.059  Score=43.83  Aligned_cols=56  Identities=11%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++||+.+ |.+|.++..... .++...++.++ .++++.|.+.|+.      +.+|++|+|
T Consensus        69 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dlk~  126 (262)
T cd05058          69 EGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFG-LQVAKGMEYLASK------KFVHRDLAA  126 (262)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhC------CccccccCc
Confidence            34577899875 479999888666 67888888899 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=93.69  E-value=0.072  Score=43.18  Aligned_cols=57  Identities=11%  Similarity=0.135  Sum_probs=48.3

Q ss_pred             CCeeeEEeecccc-ccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+.++|||.+. .+|.+++..   ++ .|+...+..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~ql~~al~~lH~~------~i~H~~l~p  141 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYIL-RETLRGLAYLHEN------KVIHRDIKG  141 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHH-HHHHHHHHHHhcC------CcccCCCCH
Confidence            3567899999986 588888764   24 79999999999 6999999999998      999999876

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=93.51  E-value=0.067  Score=45.24  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.+ |.+|..++.. +.|+...++.+. .+++..|.+.|+.      +.+|++|+|
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~-~~l~~~~~~~i~-~~l~~al~~LH~~------~i~H~dL~p  143 (296)
T cd06655          87 VGDELFVVMEYLAGGSLTDVVTE-TCMDEAQIAAVC-RECLQALEFLHAN------QVIHRDIKS  143 (296)
T ss_pred             cCceEEEEEEecCCCcHHHHHHh-cCCCHHHHHHHH-HHHHHHHHHHHHC------CcccCCCCH
Confidence            346789999977 7899887763 379999999999 6999999999999      999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=93.51  E-value=0.074  Score=41.62  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             CeeeEEeeccccc-cHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGS-DLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~-dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++|||.++. +|..++...+.++..+++.+. .+++..|.+.|+.      +.+|.+|.|
T Consensus        59 ~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~~i~~  115 (244)
T smart00220       59 EDKLYLVMEYCDGGDLFDLLKKRGRLSEDEARFYA-RQILSALEYLHSN------GIIHRDLKP  115 (244)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHhccCCCHHHHHHHH-HHHHHHHHHHHHc------CeecCCcCH
Confidence            3689999999998 999998865569999999999 6999999999999      999999865

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0192|consensus

Probab=93.33  E-value=0.049  Score=49.44  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             eEEeecccc-ccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhh-HHHhhhhh
Q psy13596         13 RFIIISKFG-SDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ-AVTSVIIG   72 (186)
Q Consensus        13 rfmVmerlG-~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~-~~~r~i~~   72 (186)
                      -.+|||.+. -+|..+...+ + +|+.++++.+| +++=..|.|.|+.      . ++|||+|+
T Consensus       115 ~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~a-ldiArGm~YLH~~------~~iIHrDLK~  171 (362)
T KOG0192|consen  115 LCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIA-LDIARGMEYLHSE------GPIIHRDLKS  171 (362)
T ss_pred             eEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHH-HHHHHHHHHHhcC------CCeeecccCh
Confidence            468999885 8999999884 5 89999999999 8999999999999      6 89999986

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=93.33  E-value=0.065  Score=48.43  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         33 EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        33 kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .|+...++.++ .|+++.|.+.|..      +.+|++|+|
T Consensus       233 ~l~~~~~~~~~-~qi~~aL~~LH~~------~ivH~dikp  265 (400)
T cd05105         233 GLTTLDLLSFT-YQVARGMEFLASK------NCVHRDLAA  265 (400)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHhC------CeeCCCCCh
Confidence            36677788899 7999999999998      999999987

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=93.25  E-value=0.054  Score=44.86  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.|+|||.++ .+|..++. ++.++...++.++ .+++..+.+.|+.      +..|++|+|
T Consensus        73 ~~~~~~lv~e~~~~~~l~~~i~-~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~dl~p  129 (277)
T cd06641          73 KDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATIL-REILKGLDYLHSE------KKIHRDIKA  129 (277)
T ss_pred             eCCeEEEEEEeCCCCcHHHHHh-cCCCCHHHHHHHH-HHHHHHHHHHccC------CeecCCCCH
Confidence            4568999999985 68888776 3389999999999 6999999999988      999999886

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=93.10  E-value=0.088  Score=43.74  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=45.8

Q ss_pred             CeeeEEeecccc-ccHHHHHHHc---------------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHH
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEH---------------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAV   66 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~---------------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~   66 (186)
                      ....++|||.+. .+|.......                     . .|+...++.++ .+++..|.+.|+.      +.+
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~aL~~lH~~------~i~  152 (288)
T cd05050          80 GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIA-KQVAAGMAYLSER------KFV  152 (288)
T ss_pred             CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHhC------Cee
Confidence            346799999875 5888887632                     1 46777889999 7999999999988      999


Q ss_pred             Hhhhhh
Q psy13596         67 TSVIIG   72 (186)
Q Consensus        67 ~r~i~~   72 (186)
                      |++|+|
T Consensus       153 H~dl~p  158 (288)
T cd05050         153 HRDLAT  158 (288)
T ss_pred             cccccH
Confidence            999987

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0984|consensus

Probab=93.05  E-value=0.081  Score=46.14  Aligned_cols=53  Identities=8%  Similarity=0.116  Sum_probs=48.1

Q ss_pred             EEeeccccccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         14 FIIISKFGSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        14 fmVmerlG~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-||..-.||.+++.+   .| ..|+.-+=.|| ..+++.|.+.|.+     -+.+|||+||
T Consensus       121 wIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa-~Svv~al~~L~~k-----L~vIHRDvKP  177 (282)
T KOG0984|consen  121 WICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIA-VSVVHALEFLHSK-----LSVIHRDVKP  177 (282)
T ss_pred             EEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhH-HHHHHHHHHHHHH-----hhhhhccCCc
Confidence            57899999999999984   45 78888888999 7999999999999     9999999998

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.93  E-value=0.079  Score=53.78  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=46.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc----------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH----------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~----------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|.+++...          . .++..+++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        73 d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~-~QIa~AL~yLHs~------GIIHRDLKP  141 (932)
T PRK13184         73 DGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIF-HKICATIEYVHSK------GVLHRDLKP  141 (932)
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHH-HHHHHHHHHHHHC------CccccCCch
Confidence            346789999987 78999988632          1 35566788899 7999999999998      999999997

>KOG0614|consensus

Probab=92.85  E-value=0.041  Score=53.03  Aligned_cols=60  Identities=10%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             ccCCCeeeEEeecc-ccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          6 EHNGNSYRFIIISK-FGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         6 ~~~~~~yrfmVmer-lG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .|...+|=||.||- ||-+||.|+...|.|..+|.-=++ ...+..++|.|.+      +++.||+||
T Consensus       488 Tfrd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~-acv~EAfeYLH~k------~iIYRDLKP  548 (732)
T KOG0614|consen  488 TFRDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYV-ACVLEAFEYLHRK------GIIYRDLKP  548 (732)
T ss_pred             HhccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhH-HHHHHHHHHHHhc------CceeccCCh
Confidence            45678899999985 799999999988899999887777 4899999999999      999999997

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=92.76  E-value=0.084  Score=45.78  Aligned_cols=32  Identities=13%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         34 FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        34 f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |+...++.++ .|+++.|.+.|+.      +++||+|+|
T Consensus       176 ~~~~~~~~~~-~qi~~al~~lH~~------~i~H~dikp  207 (343)
T cd05103         176 LTLEDLICYS-FQVAKGMEFLASR------KCIHRDLAA  207 (343)
T ss_pred             CCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCcc
Confidence            5666777888 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0575|consensus

Probab=92.60  E-value=0.098  Score=50.57  Aligned_cols=57  Identities=11%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+|=|||.|++- .+|-.|.++.+.|++.=|..+. .|++..|.+.|+.      +++|||+|.
T Consensus        89 Ds~nVYivLELC~~~sL~el~Krrk~ltEpEary~l-~QIv~GlkYLH~~------~IiHRDLKL  146 (592)
T KOG0575|consen   89 DSNNVYIVLELCHRGSLMELLKRRKPLTEPEARYFL-RQIVEGLKYLHSL------GIIHRDLKL  146 (592)
T ss_pred             cCCceEEEEEecCCccHHHHHHhcCCCCcHHHHHHH-HHHHHHHHHHHhc------Cceecccch
Confidence            4578899999998 7889998855589999999999 6999999999999      899999763

>KOG0592|consensus

Probab=92.60  E-value=0.083  Score=50.86  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=56.1

Q ss_pred             EEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhh-HHHHHHHHHHHHHHHHHH
Q psy13596         14 FIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGL-EVRRKEALSAANDLTQAL   91 (186)
Q Consensus        14 fmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~-e~~rk~a~~s~~~l~~~L   91 (186)
                      |+|++.- +-||-++..+-|.|..-.+---| .++|+.|+++|..      ++|||||||- -...+          +.-
T Consensus       150 YFvLe~A~nGdll~~i~K~Gsfde~caR~YA-AeIldAleylH~~------GIIHRDlKPENILLd~----------dmh  212 (604)
T KOG0592|consen  150 YFVLEYAPNGDLLDLIKKYGSFDETCARFYA-AEILDALEYLHSN------GIIHRDLKPENILLDK----------DGH  212 (604)
T ss_pred             EEEEEecCCCcHHHHHHHhCcchHHHHHHHH-HHHHHHHHHHHhc------CceeccCChhheeEcC----------CCc
Confidence            5666654 46888888888899998888888 6999999999999      9999999982 11222          334


Q ss_pred             HHHhhHhHHHHhhh
Q psy13596         92 VDHLNVGVAQAYLN  105 (186)
Q Consensus        92 v~~Ln~gvs~~y~N  105 (186)
                      +-.-|||.+++...
T Consensus       213 ikITDFGsAK~l~~  226 (604)
T KOG0592|consen  213 IKITDFGSAKILSP  226 (604)
T ss_pred             EEEeeccccccCCh
Confidence            55667888876443

>KOG0596|consensus

Probab=92.56  E-value=0.11  Score=50.30  Aligned_cols=80  Identities=16%  Similarity=0.084  Sum_probs=58.5

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDL   87 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l   87 (186)
                      +..|=|||||-=-.||.+|++... -.+..-+--+- .|||..+-++|++      ++||.|+||---.          +
T Consensus       431 ~d~~lYmvmE~Gd~DL~kiL~k~~~~~~~~~lk~yw-kqML~aV~~IH~~------gIVHSDLKPANFL----------l  493 (677)
T KOG0596|consen  431 TDGYLYMVMECGDIDLNKILKKKKSIDPDWFLKFYW-KQMLLAVKTIHQH------GIVHSDLKPANFL----------L  493 (677)
T ss_pred             cCceEEEEeecccccHHHHHHhccCCCchHHHHHHH-HHHHHHHHHHHHh------ceeecCCCcccEE----------E
Confidence            568999999988899999999766 44434555556 5999999999999      9999999981100          0


Q ss_pred             HHHHHHHhhHhHHHHhhh
Q psy13596         88 TQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~N  105 (186)
                      -...+..||||+|++-.+
T Consensus       494 VkG~LKLIDFGIA~aI~~  511 (677)
T KOG0596|consen  494 VKGRLKLIDFGIANAIQP  511 (677)
T ss_pred             EeeeEEeeeechhcccCc
Confidence            011345688888876443

>smart00090 RIO RIO-like kinase

Probab=92.47  E-value=0.038  Score=46.76  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             eEEeecccccc-HHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhh-HHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSD-LQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ-AVTSVIIGLEVRRKEALSAANDLTQA   90 (186)
Q Consensus        13 rfmVmerlG~d-L~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~-~~~r~i~~~e~~rk~a~~s~~~l~~~   90 (186)
                      .|||||.++.+ |......+..++...+..++ .|++..+.+.|..      + .+|+||+|.-..    +.      ..
T Consensus       123 ~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~-~qi~~~l~~LH~~------g~iiH~Dikp~NIl----i~------~~  185 (237)
T smart00090      123 NVLVMEFIGGDGLPAPRLKDVEPEEEEEFELY-DDILEEMRKLYKE------GELVHGDLSEYNIL----VH------DG  185 (237)
T ss_pred             ceEEEEEecCCcccccccccCCcchHHHHHHH-HHHHHHHHHHHhc------CCEEeCCCChhhEE----EE------CC
Confidence            58999999974 54443223367777888899 6999999999999      8 999999882110    00      11


Q ss_pred             HHHHhhHhHHHHhhhhh
Q psy13596         91 LVDHLNVGVAQAYLNQK  107 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~Nqk  107 (186)
                      -+..+|+|.+....++.
T Consensus       186 ~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      186 KVVIIDVSQSVELDHPM  202 (237)
T ss_pred             CEEEEEChhhhccCCcc
Confidence            24457788776655544

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=92.40  E-value=0.12  Score=42.01  Aligned_cols=57  Identities=14%  Similarity=0.104  Sum_probs=46.1

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHc-----C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEH-----K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~-----~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+-++|||-+ |.||..++...     . +|+..+++.++ .|++..|.+.|..      +.+|+||+|
T Consensus        78 ~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~aL~~lH~~------~i~H~dlkp  141 (273)
T cd05035          78 KIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFM-VDIALGMEYLSNR------NFIHRDLAA  141 (273)
T ss_pred             cCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHH-HHHHHHHHHHHhC------Ceeccccch
Confidence            345678888864 46888776432     2 68999999999 7999999999998      899999987

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PRK14879 serine/threonine protein kinase; Provisional

Probab=92.40  E-value=0.097  Score=41.83  Aligned_cols=51  Identities=12%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             eeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...++|||.+ |.+|.++......    ++..++ .++...|.+.|+.      +.+|+|++|
T Consensus        72 ~~~~lv~e~~~G~~L~~~~~~~~~----~~~~i~-~~i~~~l~~lH~~------~i~H~Dl~p  123 (211)
T PRK14879         72 ENFIIVMEYIEGEPLKDLINSNGM----EELELS-REIGRLVGKLHSA------GIIHGDLTT  123 (211)
T ss_pred             CCCEEEEEEeCCcCHHHHHHhccH----HHHHHH-HHHHHHHHHHHhC------CcccCCCCc
Confidence            4578999998 8999999873322    788888 5899999999999      999999876

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=92.38  E-value=0.13  Score=41.80  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=47.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++.++|||.+ |.+|..++..   .+ .++....+.++ .|+++.|.+.|+.      +.+|++++|
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lH~~------~i~h~~l~~  134 (260)
T cd08222          74 RDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWF-IQLLLGVHYMHQR------RILHRDLKA  134 (260)
T ss_pred             CCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHH-HHHHHHHHHHHHc------CccccCCCh
Confidence            45678999987 5799887764   23 69999999999 7999999999988      999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0591|consensus

Probab=92.35  E-value=0.044  Score=49.53  Aligned_cols=134  Identities=11%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             eEEeecccc-ccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhh-HHHhhhhhhHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFG-SDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ-AVTSVIIGLEVRRKEALSAAND   86 (186)
Q Consensus        13 rfmVmerlG-~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~-~~~r~i~~~e~~rk~a~~s~~~   86 (186)
                      =.||||.++ -||..+.+.   .+ .||++||..+- .|.+..|...|.+   |-++ .+||||||--.    ++.    
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f-~QL~~AL~~cH~~---~~r~~VmHRDIKPaNI----Fl~----  162 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYF-VQLCRALYHCHSK---IPRGTVMHRDIKPANI----FLT----  162 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHH-HHHHHHHHHHhcc---ccccceeeccCcchhe----EEc----
Confidence            368999998 789888764   34 69999999999 7999999999995   4443 68999998210    010    


Q ss_pred             HHHHHHHHhhHhHHHHhhhhhhhhHHHHHHHHHH-----------HHHHhhHHHHHH-----------------HHHHHH
Q psy13596         87 LTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNA-----------ITFSKQTQQWLS-----------------LVDNFN  138 (186)
Q Consensus        87 l~~~Lv~~Ln~gvs~~y~Nqk~ie~E~K~L~~~T-----------a~laKqt~qW~~-----------------l~~~~~  138 (186)
                       ++.+|..=|+|+++.+.+...-..    -..||           ..|..-++-|.-                 -+.++.
T Consensus       163 -~~gvvKLGDfGL~r~l~s~~tfA~----S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~  237 (375)
T KOG0591|consen  163 -ANGVVKLGDFGLGRFLSSKTTFAH----SLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLC  237 (375)
T ss_pred             -CCCceeeccchhHhHhcchhHHHH----hhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence             144566667888887777544331    01111           345566777752                 122333


Q ss_pred             HHhhhhccHH-HHHHHHHHHHHHHHHH
Q psy13596        139 SALKEIGDVE-NWAKVIEEDMRLISAA  164 (186)
Q Consensus       139 ~~LKEiGDve-NWa~~iE~D~~~i~~t  164 (186)
                      +.+ |=||.- -|++.--.|+..|...
T Consensus       238 ~KI-~qgd~~~~p~~~YS~~l~~li~~  263 (375)
T KOG0591|consen  238 KKI-EQGDYPPLPDEHYSTDLRELINM  263 (375)
T ss_pred             HHH-HcCCCCCCcHHHhhhHHHHHHHH
Confidence            333 446765 6777777777765544

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=92.32  E-value=0.11  Score=45.10  Aligned_cols=33  Identities=9%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         33 EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        33 kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .|+...+..++ .||+..|.+.|..      +++||||+|
T Consensus       169 ~l~~~~~~~~~-~qi~~aL~~lH~~------~ivHrDikp  201 (337)
T cd05054         169 PLTLEDLISYS-FQVARGMEFLASR------KCIHRDLAA  201 (337)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCc
Confidence            46778889999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=92.19  E-value=0.1  Score=43.91  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+.++|||.+ |.+|..++.. .+|+...++.+. .+++..|.+.|+.      +.+|++++|
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~-~~l~~~~~~~i~-~~l~~al~~LH~~------gi~H~dL~p  143 (293)
T cd06647          87 VGDELWVVMEYLAGGSLTDVVTE-TCMDEGQIAAVC-RECLQALEFLHSN------QVIHRDIKS  143 (293)
T ss_pred             eCCcEEEEEecCCCCcHHHHHhh-cCCCHHHHHHHH-HHHHHHHHHHHhC------CEeeccCCH
Confidence            346889999988 7899888763 378888999999 6999999999988      999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0598|consensus

Probab=92.13  E-value=0.14  Score=46.78  Aligned_cols=57  Identities=9%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             CCCeeeEEeecccc-ccHHHHHHHcCCCCcchhh-cccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTL-TITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl-~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .....=|||+|.+. -+|-.-+++.++|++.++. -||  .++..|.+.|++      ++++||+||
T Consensus        95 Qt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYla--Ei~lAL~~LH~~------gIiyRDlKP  153 (357)
T KOG0598|consen   95 QTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLA--EIVLALGYLHSK------GIIYRDLKP  153 (357)
T ss_pred             ccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHH--HHHHHHHHHHhC------CeeeccCCH
Confidence            34566789999875 5999999988899999764 455  699999999999      999999998

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=92.10  E-value=0.15  Score=42.14  Aligned_cols=55  Identities=20%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             eeeEEeeccc-cccHHHHHHH---------------cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDE---------------HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~---------------~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.+++|+.+ |.+|..++..               .. .|+..+++.++ .|++..|.+.|..      +.+|+||+|
T Consensus        81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ql~~aL~~lH~~------gi~H~dlkp  152 (283)
T cd05091          81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIV-TQIAAGMEFLSSH------HVVHKDLAT  152 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHc------Cccccccch
Confidence            4577888876 4778887642               12 47888899999 6999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PRK10345 hypothetical protein; Provisional

Probab=91.96  E-value=0.12  Score=43.40  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=42.4

Q ss_pred             cccccC-CCeeeE-Eeecccc---ccHHHHHHHcCCCCcchhhcccchhHHHHH-HHHHHhhhhhhhhHHHhhhhh
Q psy13596          3 GQQEHN-GNSYRF-IIISKFG---SDLQKLLDEHKEFSLKNTLTITDFPILKVM-SMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         3 G~~~~~-~~~yrf-mVmerlG---~dL~~l~~~~~kf~~ktVl~la~~~ml~~l-~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      |..+.+ |..|=| +|||..|   .+|.+++.. ++|+.. + ... .++|..+ .+.|+.      +.+||||||
T Consensus        68 g~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~-~~~~e~-~-~~~-~~~L~~l~~yLh~~------~IvhrDlKp  133 (210)
T PRK10345         68 GTVETDCGTGYVYDVIADFDGKPSITLTEFAEQ-CRYEED-V-AQL-RQLLKKLKRYLLDN------RIVTMELKP  133 (210)
T ss_pred             EEEEeCCCCeEEEEEEecCCCCcchhHHHHHHc-ccccHh-H-HHH-HHHHHHHHHHHHHC------CEeecCCCH
Confidence            444443 234545 7899666   899999964 366665 2 223 3788888 899999      999999998

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=91.84  E-value=0.1  Score=43.31  Aligned_cols=53  Identities=6%  Similarity=0.025  Sum_probs=43.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.+||||.+....-..+   +.++..++..++ .|++..|.+.|+.      +.+|++|+|
T Consensus        71 ~~~~~lv~e~~~~~~l~~~---~~~~~~~~~~~~-~qi~~~l~~lH~~------~i~H~dlkp  123 (279)
T cd06619          71 ENRISICTEFMDGGSLDVY---RKIPEHVLGRIA-VAVVKGLTYLWSL------KILHRDVKP  123 (279)
T ss_pred             CCEEEEEEecCCCCChHHh---hcCCHHHHHHHH-HHHHHHHHHHHHC------CEeeCCCCH
Confidence            3567899998865332333   378899999999 7999999999998      999999987

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG1989|consensus

Probab=91.73  E-value=0.12  Score=51.27  Aligned_cols=52  Identities=6%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             eEEeecccc-ccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhh--HHHhhhh
Q psy13596         13 RFIIISKFG-SDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ--AVTSVII   71 (186)
Q Consensus        13 rfmVmerlG-~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~--~~~r~i~   71 (186)
                      =+|.||.|. -.|=++++..-  +|++..||+|. .++-..+..+|+.      +  ++|||||
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf-~dv~~AVa~mH~~------~pPiIHRDLK  173 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIF-YDVCEAVAAMHYL------KPPIIHRDLK  173 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHHhcC------CCccchhhhh
Confidence            467899998 69999999543  89999999999 6999999999999      6  9999987

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=91.70  E-value=0.12  Score=43.73  Aligned_cols=70  Identities=13%  Similarity=0.032  Sum_probs=48.9

Q ss_pred             EEeecccc--ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH-HHHHHHHHHHHHHH
Q psy13596         14 FIIISKFG--SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR-RKEALSAANDLTQA   90 (186)
Q Consensus        14 fmVmerlG--~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~-rk~a~~s~~~l~~~   90 (186)
                      +|||+++.  .+|..++.. +.++...+     .++...|.+.|+.      +.+|+|++|.-.. ..          +.
T Consensus       122 ~lV~e~l~G~~~L~~~l~~-~~l~~~~~-----~~i~~~l~~lH~~------GI~HrDlkp~NILv~~----------~~  179 (239)
T PRK01723        122 DILIERIEGARDLVALLQE-APLSEEQW-----QAIGQLIARFHDA------GVYHADLNAHNILLDP----------DG  179 (239)
T ss_pred             eEEEEecCCCCCHHHHHhc-CCCCHHHH-----HHHHHHHHHHHHC------CCCCCCCCchhEEEcC----------CC
Confidence            59999775  689888752 35666543     3567789999999      9999999872110 00          11


Q ss_pred             HHHHhhHhHHHHhhh
Q psy13596         91 LVDHLNVGVAQAYLN  105 (186)
Q Consensus        91 Lv~~Ln~gvs~~y~N  105 (186)
                      -+..+|+|.+..+..
T Consensus       180 ~v~LIDfg~~~~~~~  194 (239)
T PRK01723        180 KFWLIDFDRGELRTP  194 (239)
T ss_pred             CEEEEECCCcccCCC
Confidence            366789998888774

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=91.64  E-value=0.12  Score=42.69  Aligned_cols=53  Identities=19%  Similarity=0.307  Sum_probs=44.9

Q ss_pred             eEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         13 RFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      -+||||.+ +.+|.+.+... . .|+..+.+.++ +|+.+.|.+.|..      +.+|+++.+
T Consensus        76 ~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~-~~i~~~l~~Lh~~------~iiH~~l~~  131 (259)
T PF07714_consen   76 LFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIA-IQIAEALSYLHSN------NIIHGNLSP  131 (259)
T ss_dssp             EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHH-HHHHHHHHHHHHT------TEEEST-SG
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccc------ccccccccc
Confidence            78999997 46999999987 4 89999999999 7999999999998      899999764

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=91.50  E-value=0.11  Score=51.49  Aligned_cols=56  Identities=18%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.|||||.+ |.+|.+++.   +++...++.++ .++.+.|.+.|+.   =++..+||||+|
T Consensus       755 ~~~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~-~~ia~~L~yLH~~---~~~~iiH~dlkp  811 (968)
T PLN00113        755 EKGAYLIHEYIEGKNLSEVLR---NLSWERRRKIA-IGIAKALRFLHCR---CSPAVVVGNLSP  811 (968)
T ss_pred             CCCCEEEEeCCCCCcHHHHHh---cCCHHHHHHHH-HHHHHHHHHhccC---CCCCeecCCCCH
Confidence            35679999988 789999986   58888899999 7999999999942   014899999997

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=91.18  E-value=0.12  Score=44.92  Aligned_cols=52  Identities=13%  Similarity=0.034  Sum_probs=40.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.+|..    ...++...+..++ .||+..|.+.|+.      +.+||||++
T Consensus       144 ~~~~~lv~e~~~~~~L~~----~~~~~~~~~~~i~-~qi~~aL~~LH~~------~ivHrDlkp  196 (353)
T PLN00034        144 NGEIQVLLEFMDGGSLEG----THIADEQFLADVA-RQILSGIAYLHRR------HIVHRDIKP  196 (353)
T ss_pred             CCeEEEEEecCCCCcccc----cccCCHHHHHHHH-HHHHHHHHHHHHC------CEeecCCCH
Confidence            45678999987 345532    1156677888899 6999999999998      999999987

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=91.06  E-value=0.15  Score=48.63  Aligned_cols=57  Identities=18%  Similarity=0.111  Sum_probs=43.6

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcC-CCC-------------------cchhhcccchhHHHHHHHHHHhhhhhhhhHHH
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHK-EFS-------------------LKNTLTITDFPILKVMSMEYCYQRNWQKQAVT   67 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~-kf~-------------------~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~   67 (186)
                      .....+|||+..+ .+|.+++..++ .+.                   ...+..++ .|++..|.+.|+.      +++|
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~-~qll~aL~yLH~~------gIiH  278 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIM-RQILFALDGLHST------GIVH  278 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHH-HHHHHHHHHHHHC------CEEe
Confidence            4567899999987 56888876443 222                   23455678 6999999999988      9999


Q ss_pred             hhhhh
Q psy13596         68 SVIIG   72 (186)
Q Consensus        68 r~i~~   72 (186)
                      |||||
T Consensus       279 RDLKP  283 (566)
T PLN03225        279 RDVKP  283 (566)
T ss_pred             CcCCH
Confidence            99998

>KOG0664|consensus

Probab=90.60  E-value=0.06  Score=48.70  Aligned_cols=102  Identities=14%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             EEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13596         14 FIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVD   93 (186)
Q Consensus        14 fmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~~Lv~   93 (186)
                      |.|-|++-+||.||.-.-..+|.--|.-.- +|+|..|.+.|..      .++||||||--..-+         +|-+..
T Consensus       133 YV~TELmQSDLHKIIVSPQ~Ls~DHvKVFl-YQILRGLKYLHsA------~ILHRDIKPGNLLVN---------SNCvLK  196 (449)
T KOG0664|consen  133 YVLTELMQSDLHKIIVSPQALTPDHVKVFV-YQILRGLKYLHTA------NILHRDIKPGNLLVN---------SNCILK  196 (449)
T ss_pred             HHHHHHHHhhhhheeccCCCCCcchhhhhH-HHHHhhhHHHhhc------chhhccCCCccEEec---------cCceEE
Confidence            456788999999998844478877776667 6999999999999      999999997221111         122333


Q ss_pred             HhhHhHHHHhhhhhhhh---------HHHHHHHHHHHHHHhhHHHHH
Q psy13596         94 HLNVGVAQAYLNQKKLD---------AEAKQLHTNAITFSKQTQQWL  131 (186)
Q Consensus        94 ~Ln~gvs~~y~Nqk~ie---------~E~K~L~~~Ta~laKqt~qW~  131 (186)
                      ..|||++....-..+..         =.+-++.-|+.+|..-.+-|.
T Consensus       197 ICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWS  243 (449)
T KOG0664|consen  197 ICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWS  243 (449)
T ss_pred             ecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceeh
Confidence            44555554322211111         013345667777777777775

>KOG0574|consensus

Probab=90.47  E-value=0.3  Score=44.87  Aligned_cols=54  Identities=11%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             eeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      -=++|||.|| -|+.+|....+ .+++.-+-.+- -..|+.|+|.|--      +.+|||||.
T Consensus       102 DLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL-~~TLKGL~YLH~~------~KIHRDIKA  157 (502)
T KOG0574|consen  102 DLWIVMEYCGAGSISDIMRARRKPLSEQEISAVL-RDTLKGLQYLHDL------KKIHRDIKA  157 (502)
T ss_pred             ceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHH-HHHHhHHHHHHHH------HHHHhhccc
Confidence            3589999999 79999999777 68865544444 2579999999999      889999984

>KOG0597|consensus

Probab=90.04  E-value=0.21  Score=48.88  Aligned_cols=57  Identities=7%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGL   73 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~   73 (186)
                      ...=|+|.|..--||..|+...+++|+-.|..|| ++..+.|.+.|..      .++|||+||+
T Consensus        73 ~~~~~vVte~a~g~L~~il~~d~~lpEe~v~~~a-~~LVsaL~yLhs~------rilhrd~kPq  129 (808)
T KOG0597|consen   73 SAHLWVVTEYAVGDLFTILEQDGKLPEEQVRAIA-YDLVSALYYLHSN------RILHRDMKPQ  129 (808)
T ss_pred             cceEEEEehhhhhhHHHHHHhccCCCHHHHHHHH-HHHHHHHHHHHhc------CcccccCCcc
Confidence            3556889998877999999988899999999999 7999999999999      9999999984

>KOG0610|consensus

Probab=89.94  E-value=0.3  Score=45.84  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             cCCCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          7 HNGNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         7 ~~~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +-..+|-++|||.+ |-||..+..+..  .||...+-=-| ..+|-.|+|.|--      +++.||+||
T Consensus       146 fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYa-AEvl~ALEYLHml------GivYRDLKP  207 (459)
T KOG0610|consen  146 FETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYA-AEVLLALEYLHML------GIVYRDLKP  207 (459)
T ss_pred             eeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHH-HHHHHHHHHHHhh------ceeeccCCc
Confidence            44668999999998 699999999764  69998886666 4799999999999      999999998

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=89.89  E-value=0.32  Score=37.89  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             CeeeEEeeccccc-cHHHHHHHcCC-CCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGS-DLQKLLDEHKE-FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~-dL~~l~~~~~k-f~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+.++||+.++. +|.+++..... ++...+..++ .+++..+.+.|+.      +..|+++++
T Consensus        69 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lh~~------~i~h~di~~  126 (225)
T smart00221       69 PEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYL-RQILEALEYLHSL------GIVHRDLKP  126 (225)
T ss_pred             CCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCCCCH
Confidence            4678999999887 99999987665 9999999999 6999999999998      999999765

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0666|consensus

Probab=89.63  E-value=0.081  Score=48.50  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             eeeEEeeccccccHHHHHHHcC-----CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh-----hHHHHHHH
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHK-----EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG-----LEVRRKEA   80 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~-----kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~-----~e~~rk~a   80 (186)
                      .-=.|++|.---||+.|.....     .+|..+|-.|- .|+|+.+-+.|+.      =.+|||+||     ++.+..  
T Consensus       101 ~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsil-wQil~Gv~YLH~N------WvlHRDLKPaNIlvmgdgpe--  171 (438)
T KOG0666|consen  101 KKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSIL-WQILDGVHYLHSN------WVLHRDLKPANILVMGDGPE--  171 (438)
T ss_pred             ceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHH-HHHHhhhHHHhhh------heeeccCCcceEEEeccCCc--
Confidence            4457999999999999998653     38899999999 7999999999998      689999998     332111  


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHhhhhhh-h---h-------HHHHHHHHHHHHHHhhHHHHH
Q psy13596         81 LSAANDLTQALVDHLNVGVAQAYLNQKK-L---D-------AEAKQLHTNAITFSKQTQQWL  131 (186)
Q Consensus        81 ~~s~~~l~~~Lv~~Ln~gvs~~y~Nqk~-i---e-------~E~K~L~~~Ta~laKqt~qW~  131 (186)
                              ...|..-|.|++.+|.|+-. +   +       =.+-+|.-|+..|.+-.+-|+
T Consensus       172 --------rG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWA  225 (438)
T KOG0666|consen  172 --------RGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWA  225 (438)
T ss_pred             --------cCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHH
Confidence                    23466778999999999732 2   1       236678888888988888886

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=89.15  E-value=0.2  Score=39.73  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             eeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.+||||.+ |.+|.+++...+.       .++ .++...|.+.|+.      +.+|+|++|
T Consensus        70 ~~~~lv~e~~~g~~l~~~~~~~~~-------~~~-~~i~~~l~~lH~~------gi~H~Dl~~  118 (199)
T TIGR03724        70 DNKTIVMEYIEGKPLKDVIEEGND-------ELL-REIGRLVGKLHKA------GIVHGDLTT  118 (199)
T ss_pred             CCCEEEEEEECCccHHHHHhhcHH-------HHH-HHHHHHHHHHHHC------CeecCCCCc
Confidence            4568999998 8999998763212       567 5899999999998      999999876

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0599|consensus

Probab=89.01  E-value=0.23  Score=44.97  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=46.9

Q ss_pred             CCCeeeEEeeccccc-cHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFGS-DLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG~-dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      -..+|-|+|+|++-. .|.+.+...=.+|+|-.-.|. -|+|..++++|..      .++|||+||
T Consensus        93 es~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iM-rqlfegVeylHa~------~IVHRDLKp  151 (411)
T KOG0599|consen   93 ESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIM-RQLFEGVEYLHAR------NIVHRDLKP  151 (411)
T ss_pred             cCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHH-HHHHHHHHHHHHh------hhhhcccCh
Confidence            456899999999863 455544422279999999999 5999999999999      999999987

>KOG0612|consensus

Probab=88.70  E-value=0.31  Score=50.65  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             ccCCCeeeEEeeccc-cccHHHHHHHcCCCCcc-hhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          6 EHNGNSYRFIIISKF-GSDLQKLLDEHKEFSLK-NTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         6 ~~~~~~yrfmVmerl-G~dL~~l~~~~~kf~~k-tVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-...|=|||||.+ |-||=.|..+-+++|.+ +-+.+|  .|.-.|-.+|+-      ++|||||||
T Consensus       143 AFQD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~a--EiVlAldslH~m------gyVHRDiKP  203 (1317)
T KOG0612|consen  143 AFQDERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTA--EIVLALDSLHSM------GYVHRDIKP  203 (1317)
T ss_pred             HhcCccceEEEEecccCchHHHHHhhcCCChHHHHHHHHH--HHHHHHHHHHhc------cceeccCCc
Confidence            455678999999986 89999999966678866 446666  599999999999      999999998

>KOG0032|consensus

Probab=86.35  E-value=0.37  Score=44.05  Aligned_cols=89  Identities=12%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             CCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDL   87 (186)
Q Consensus         9 ~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l   87 (186)
                      ...+-++|||++- .+|.+-..+. .||+..+..+. .|+++.+.+.|..      +.+|||+||--..-     ....-
T Consensus       107 ~~~~~~lvmEL~~GGeLfd~i~~~-~~sE~da~~~~-~~il~av~~lH~~------gvvHrDlKpEN~L~-----~~~~~  173 (382)
T KOG0032|consen  107 DPDSVYLVMELCEGGELFDRIVKK-HYSERDAAGII-RQILEAVKYLHSL------GVVHRDLKPENLLL-----ASKDE  173 (382)
T ss_pred             cCCeEEEEEEecCCchHHHHHHHc-cCCHHHHHHHH-HHHHHHHHHHHhC------CceeccCCHHHeee-----ccccC
Confidence            3458899999985 5554443322 29999999999 6999999999999      99999999832111     11111


Q ss_pred             HHHHHHHhhHhHHHHhhhhhhhh
Q psy13596         88 TQALVDHLNVGVAQAYLNQKKLD  110 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~Nqk~ie  110 (186)
                      .+.-+...|||++..+..+..+.
T Consensus       174 ~~~~ik~~DFGla~~~~~~~~~~  196 (382)
T KOG0032|consen  174 GSGRIKLIDFGLAKFIKPGERLH  196 (382)
T ss_pred             CCCcEEEeeCCCceEccCCceEe
Confidence            12457788999998877744443

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=86.30  E-value=0.53  Score=44.18  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             eeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQ   89 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~~   89 (186)
                      .+.++|||.+ |.+|.+++.        ....++ .++...|.+.|+.      +.+|+|++|.-..=.          +
T Consensus       409 ~~~~lv~E~~~g~~L~~~l~--------~~~~~~-~~i~~~L~~lH~~------giiHrDlkp~NILl~----------~  463 (535)
T PRK09605        409 EEKTIVMEYIGGKDLKDVLE--------GNPELV-RKVGEIVAKLHKA------GIVHGDLTTSNFIVR----------D  463 (535)
T ss_pred             CCCEEEEEecCCCcHHHHHH--------HHHHHH-HHHHHHHHHHHhC------CCccCCCChHHEEEE----------C
Confidence            4578999999 899998876        235567 5899999999999      999999987211000          1


Q ss_pred             HHHHHhhHhHHHH
Q psy13596         90 ALVDHLNVGVAQA  102 (186)
Q Consensus        90 ~Lv~~Ln~gvs~~  102 (186)
                      .-+..+|+|.+..
T Consensus       464 ~~~~liDFGla~~  476 (535)
T PRK09605        464 DRLYLIDFGLGKY  476 (535)
T ss_pred             CcEEEEeCccccc
Confidence            2345678888765

>PRK09188 serine/threonine protein kinase; Provisional

Probab=85.83  E-value=0.44  Score=43.40  Aligned_cols=72  Identities=4%  Similarity=-0.130  Sum_probs=47.1

Q ss_pred             eeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhh-hhhHHHHHHHHHHHHHHHH
Q psy13596         12 YRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVI-IGLEVRRKEALSAANDLTQ   89 (186)
Q Consensus        12 yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i-~~~e~~rk~a~~s~~~l~~   89 (186)
                      ..|||||.+ |.+|.. ..   ....   ..+. .++++.|.+.|+.      +.+|||| ||.-..-.         .+
T Consensus        92 ~~~LVmE~~~G~~L~~-~~---~~~~---~~~~-~~i~~aL~~lH~~------gIiHrDL~KP~NILv~---------~~  148 (365)
T PRK09188         92 KDGLVRGWTEGVPLHL-AR---PHGD---PAWF-RSAHRALRDLHRA------GITHNDLAKPQNWLMG---------PD  148 (365)
T ss_pred             CcEEEEEccCCCCHHH-hC---ccch---HHHH-HHHHHHHHHHHHC------CCeeCCCCCcceEEEc---------CC
Confidence            469999998 788862 22   1111   2345 4899999999999      9999999 87211000         01


Q ss_pred             HHHHHhhHhHHHHhhhh
Q psy13596         90 ALVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        90 ~Lv~~Ln~gvs~~y~Nq  106 (186)
                      .-+..+|||++..+...
T Consensus       149 ~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188        149 GEAAVIDFQLASVFRRR  165 (365)
T ss_pred             CCEEEEECccceecccC
Confidence            12567899988876543

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=85.78  E-value=0.64  Score=37.93  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             EEeeccc-cccHHHHHHH-----cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         14 FIIISKF-GSDLQKLLDE-----HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        14 fmVmerl-G~dL~~l~~~-----~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +++++.+ |.+|..++..     +. .++..+++.++ .|++..|.+.|..      +.+|++|+|
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~l~~lH~~------~i~H~dikp  141 (273)
T cd05074          83 MVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFM-IDIASGMEYLSSK------NFIHRDLAA  141 (273)
T ss_pred             EEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeecccch
Confidence            4566544 5678766532     11 47888999999 7999999999988      999999987

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0194|consensus

Probab=84.86  E-value=0.84  Score=43.27  Aligned_cols=50  Identities=12%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             EEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhh
Q psy13596         14 FIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVI   70 (186)
Q Consensus        14 fmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i   70 (186)
                      ++|||++ |-+|++.+.+++ .+|...-+..+ ++....|.|+|++      +.+||||
T Consensus       237 ~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~-~~AA~Gl~YLh~k------~~IHRDI  288 (474)
T KOG0194|consen  237 MLVMELCNGGSLDDYLKKNKKSLPTLEKLRFC-YDAARGLEYLHSK------NCIHRDI  288 (474)
T ss_pred             EEEEEecCCCcHHHHHHhCCCCCCHHHHHHHH-HHHHhHHHHHHHC------CCcchhH
Confidence            5889986 459999999888 68888888888 6899999999999      9999996

>KOG0033|consensus

Probab=84.80  E-value=0.45  Score=42.56  Aligned_cols=58  Identities=12%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             cCCCeeeEEeeccc-cccHH-HHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          7 HNGNSYRFIIISKF-GSDLQ-KLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         7 ~~~~~yrfmVmerl-G~dL~-~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ++...|++||+|.. |.||. +|..+ --||+.-+--.. -|+|..+-+=|..      +++|||++|
T Consensus        79 i~~~~~~ylvFe~m~G~dl~~eIV~R-~~ySEa~aSH~~-rQiLeal~yCH~n------~IvHRDvkP  138 (355)
T KOG0033|consen   79 IQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCI-QQILEALAYCHSN------GIVHRDLKP  138 (355)
T ss_pred             hcccceeEEEEecccchHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHhc------CceeccCCh
Confidence            36778999999987 56653 23321 157777777777 5999999999999      999999987

>KOG1027|consensus

Probab=84.47  E-value=0.64  Score=46.88  Aligned_cols=58  Identities=10%  Similarity=0.205  Sum_probs=44.0

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchh---hcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNT---LTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGL   73 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktV---l~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~   73 (186)
                      ...|+|+.+|+|-++|+++.+..+ .+....+   ..+- .|+.+.+.-.|.-      +++|||+||+
T Consensus       574 d~qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l-~q~~~GlaHLHsl------~iVHRDLkPQ  635 (903)
T KOG1027|consen  574 DRQFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVL-SQIASGLAHLHSL------KIVHRDLKPQ  635 (903)
T ss_pred             CCceEEEEehHhhhhHHHHHhccccchhhcccccHHHHH-HHHHHHHHHHHhc------ccccccCCCc
Confidence            457999999999999999999754 4444431   1122 2677788888988      9999999983

>KOG0593|consensus

Probab=84.43  E-value=0.69  Score=42.33  Aligned_cols=74  Identities=9%  Similarity=0.103  Sum_probs=58.2

Q ss_pred             EEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhH-HHHHHHHHHHHHHHHHH
Q psy13596         14 FIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLE-VRRKEALSAANDLTQAL   91 (186)
Q Consensus        14 fmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e-~~rk~a~~s~~~l~~~L   91 (186)
                      .||+|.+---+-.-+++.. ..+...|-++- +|+|..+-+-|..      ..+||||||-- .-.+          +.+
T Consensus        77 hLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l-~Q~l~ai~~cHk~------n~IHRDIKPENILit~----------~gv  139 (396)
T KOG0593|consen   77 HLVFEYCDHTVLHELERYPNGVPSELVKKYL-YQLLKAIHFCHKN------NCIHRDIKPENILITQ----------NGV  139 (396)
T ss_pred             EEEeeecchHHHHHHHhccCCCCHHHHHHHH-HHHHHHhhhhhhc------CeecccCChhheEEec----------CCc
Confidence            6899988877666667655 89999999999 7999999999999      99999999821 1112          556


Q ss_pred             HHHhhHhHHHHhh
Q psy13596         92 VDHLNVGVAQAYL  104 (186)
Q Consensus        92 v~~Ln~gvs~~y~  104 (186)
                      +...|||.|....
T Consensus       140 vKLCDFGFAR~L~  152 (396)
T KOG0593|consen  140 VKLCDFGFARTLS  152 (396)
T ss_pred             EEeccchhhHhhc
Confidence            7778888886544

>KOG0578|consensus

Probab=84.43  E-value=0.52  Score=45.38  Aligned_cols=51  Identities=12%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             eEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhh
Q psy13596         13 RFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVII   71 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~   71 (186)
                      =+.|||.+ |-+|.++...+ .|++-.+--|+ ..+|..|.+.|..      +.+|||||
T Consensus       345 LWVVMEym~ggsLTDvVt~~-~~~E~qIA~Ic-re~l~aL~fLH~~------gIiHrDIK  396 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKT-RMTEGQIAAIC-REILQGLKFLHAR------GIIHRDIK  396 (550)
T ss_pred             eEEEEeecCCCchhhhhhcc-cccHHHHHHHH-HHHHHHHHHHHhc------ceeeeccc
Confidence            35788877 56799998844 67777777777 5799999999999      99999998

>KOG1167|consensus

Probab=82.45  E-value=0.65  Score=43.31  Aligned_cols=83  Identities=19%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             CCCeeeEEeeccccccH-HHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH--HHHHHHHHH
Q psy13596          8 NGNSYRFIIISKFGSDL-QKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV--RRKEALSAA   84 (186)
Q Consensus         8 ~~~~yrfmVmerlG~dL-~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~--~rk~a~~s~   84 (186)
                      ++++-.-+||+-++-+= -+|+.   .++..-+..-. ..||..|...|..      +++||||||.--  -++      
T Consensus       105 rnnd~v~ivlp~~~H~~f~~l~~---~l~~~~i~~Yl-~~ll~Al~~~h~~------GIvHRDiKpsNFL~n~~------  168 (418)
T KOG1167|consen  105 RNNDQVAIVLPYFEHDRFRDLYR---SLSLAEIRWYL-RNLLKALAHLHKN------GIVHRDIKPSNFLYNRR------  168 (418)
T ss_pred             ccCCeeEEEecccCccCHHHHHh---cCCHHHHHHHH-HHHHHHhhhhhcc------CccccCCCccccccccc------
Confidence            45677899999999554 44444   34433333333 3489999999999      999999998211  000      


Q ss_pred             HHHHHHHHHHhhHhHHHHhhhhhhhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYLNQKKLD  110 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~Nqk~ie  110 (186)
                          ..--..+|||+++.|...+.-+
T Consensus       169 ----t~rg~LvDFgLA~~~d~~~~~~  190 (418)
T KOG1167|consen  169 ----TQRGVLVDFGLAQRYDGYQQTE  190 (418)
T ss_pred             ----cCCceEEechhHHHHHhhhhhh
Confidence                1124568999998866655433

>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8

Probab=82.20  E-value=8.4  Score=37.66  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             hhHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy13596        109 LDAEAKQL-HTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSIN  174 (186)
Q Consensus       109 ie~E~K~L-~~~Ta~laKqt~qW~~l~~~~~~~LKEiGDveNWa~~iE~D~~~i~~tl~~v~~~~~~  174 (186)
                      |.+|...| ..+...+-.--.+|..+...++.++.|+-+++.|-...+..+..+.+.|++++..++.
T Consensus        10 L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~   76 (701)
T PF09763_consen   10 LSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNG   76 (701)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            34444444 3445667778888999999999999999999999999999999999999999987654

This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=81.88  E-value=1.2  Score=42.33  Aligned_cols=55  Identities=11%  Similarity=0.013  Sum_probs=42.0

Q ss_pred             eeeEEeecccc-ccHHHHHHHcC------------------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhH
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEHK------------------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQA   65 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~~------------------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~   65 (186)
                      ...+||||..+ .+|.+++....                        +++..++..++ .|++..|.+.|+.      +.
T Consensus       258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~-~ql~~aL~~lH~~------~i  330 (507)
T PLN03224        258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVM-RQVLTGLRKLHRI------GI  330 (507)
T ss_pred             CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHH-HHHHHHHHHHHHC------Ce
Confidence            35789999876 57777665321                        23445677788 6999999999998      89


Q ss_pred             HHhhhhh
Q psy13596         66 VTSVIIG   72 (186)
Q Consensus        66 ~~r~i~~   72 (186)
                      +||||||
T Consensus       331 vHrDLKp  337 (507)
T PLN03224        331 VHRDIKP  337 (507)
T ss_pred             ecCCCch
Confidence            9999987

>KOG0577|consensus

Probab=80.91  E-value=0.75  Score=45.51  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=49.9

Q ss_pred             cccCCCeee----EEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          5 QEHNGNSYR----FIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         5 ~~~~~~~yr----fmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+|+|+..|    +||||.|=-|-.+|++-.. .+-.--+.-|+ -..|+.|.|.|+.      .-||||||.
T Consensus        89 ieYkgCyLre~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~-~gaL~gLaYLHS~------~~IHRDiKA  154 (948)
T KOG0577|consen   89 IEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAIT-HGALQGLAYLHSH------NRIHRDIKA  154 (948)
T ss_pred             ccccceeeccchHHHHHHHHhccHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHh------hHHhhhccc
Confidence            467777765    7999999999999998665 46666666666 5799999999999      999999983

>KOG0665|consensus

Probab=80.48  E-value=0.42  Score=43.65  Aligned_cols=50  Identities=8%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             EEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         14 FIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        14 fmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ++|||..--+|..+..  -.+..+|+-.|- +||+..+..+|+.      +++|||+||
T Consensus        97 y~v~e~m~~nl~~vi~--~elDH~tis~i~-yq~~~~ik~lhs~------~IihRdLkP  146 (369)
T KOG0665|consen   97 YLVMELMDANLCQVIL--MELDHETISYIL-YQMLCGIKHLHSA------GIIHRDLKP  146 (369)
T ss_pred             HHHHHhhhhHHHHHHH--HhcchHHHHHHH-HHHHHHHHHHHhc------ceeecccCc
Confidence            5788888888877655  367788999999 7999999999999      999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3op5_A	364	Human Vaccinia-Related Kinase 1 Length = 364		4e-06
2lav_A	361	Nmr Solution Structure Of Human Vaccinia-Related Ki		1e-05
2kty_A	368	Solution Structure Of Human Vaccinia Related Kinase		1e-05

>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1 Length = 364

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3   GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
           G  + NG SYRF+I+ +FGSDLQK+ + + K FS K  L ++    L+++  +EY ++  
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61  WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
           +    + +  + L  +  + +         LVD+   G+A  Y  +   K   A+ K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQVY--------LVDY---GLAYRYCPEGVHKAYAADPKRCH 221
Query: 118 TNAITFS 124
              I F+
Sbjct: 222 DGTIEFT 228

>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1 Length = 361

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3   GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
           G  + NG SYRF+I+ +FGSDLQK+ + + K FS K  L ++    L+++  +EY ++  
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61  WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
           +    + +  + L  +  + +         LVD+   G+A  Y  +   K+   + K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQV--------YLVDY---GLAYRYCPEGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
              I F+
Sbjct: 222 DGTIEFT 228

>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1 Length = 368

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3   GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
           G  + NG SYRF+I+ +FGSDLQK+ + + K FS K  L ++    L+++  +EY ++  
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61  WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
           +    + +  + L  +  + +         LVD+   G+A  Y  +   K+   + K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQV--------YLVDY---GLAYRYCPEGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
              I F+
Sbjct: 222 DGTIEFT 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	4e-07
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	1e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	8e-05

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 3   GQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITD 44
           G  E  G SYRF+++ + G DLQK+  ++  F     L +  
Sbjct: 117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGI 158

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 3   GQQEHNGNSYRFIIISKFGSDLQKLLDE-HKEFSLKNTLTITD 44
           G  + NG SYRF+I+ +FGSDLQK+ +   K FS K  L ++ 
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSL 159

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 8   NGNSYRFIIISKFGSDLQKLLDE--HKEFSLKNTLTITD 44
           + + YRF+++   G  LQ  LD       S ++ L +  
Sbjct: 128 HQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVAC 166

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	98.16
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.12
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	97.83
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	97.7
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	97.66
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	97.63
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	97.61
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	97.59
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	97.56
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.54
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	97.54
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.5
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	97.48
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	97.47
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	97.46
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	97.46
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	97.45
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	97.42
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	97.41
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	97.41
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	97.36
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.32
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	97.3
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	97.29
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	97.23
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	97.23
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	97.23
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	97.21
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.21
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	97.18
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	97.18
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	97.17
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	97.17
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	97.16
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	97.03
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	97.02
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	97.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	96.98
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	96.8
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	96.68
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	96.67
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	96.66
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	96.62
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	96.57
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	96.52
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	96.51
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	96.45
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	96.44
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	96.42
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	96.29
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	96.08
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	95.75
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	95.67
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	95.51
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	94.91
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	94.87
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	93.78
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	93.56
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	93.43

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.16  E-value=3.1e-07  Score=75.39  Aligned_cols=83  Identities=19%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH--HHHHHHHHHH
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR--RKEALSAAND   86 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~--rk~a~~s~~~   86 (186)
                      ..+.|+|||.+|.+|..++...+ .|+..+++.++ .|++..|.+.|+.      +.+||||||.-..  +.      ..
T Consensus        73 ~~~~~~vme~~~~~l~~~~~~~~~~~~~~~~~~i~-~q~~~~l~~lH~~------giiHrDiKp~Nili~~~------~~  139 (293)
T d1csna_          73 GLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAA-KQMLARVQSIHEK------SLVYRDIKPDNFLIGRP------NS  139 (293)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHH-HHHHHHHHHHHTT------TEECCCCCGGGEEECCS------SS
T ss_pred             CCccEEEEEecCCCHHHHHHhhccchhhHHHHHHH-HHHHHHHHHHHHC------CceeccCCccceeecCc------cc
Confidence            45789999999999999999888 89999999999 7999999999999      9999999982110  00      00


Q ss_pred             HHHHHHHHhhHhHHHHhhh
Q psy13596         87 LTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        87 l~~~Lv~~Ln~gvs~~y~N  105 (186)
                      -....+..+|||+++.+.+
T Consensus       140 ~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_         140 KNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             TTTTCEEECCCTTCEESBC
T ss_pred             ccCCceEEcccceeEEccc
Confidence            0012345678888876543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=4.6e-07  Score=73.84  Aligned_cols=80  Identities=19%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH----HHHHHHHHH
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV----RRKEALSAA   84 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~----~rk~a~~s~   84 (186)
                      ..+.+||||.+|.+|...+...+ +|+..+++.++ .|+++.|.+.|++      +.+||||||.=.    ...      
T Consensus        75 ~~~~~ivme~~~~~l~~~~~~~~~~~~~~~~~~~~-~qi~~~l~~lH~~------~iiHrDiKp~NIl~~~~~~------  141 (299)
T d1ckia_          75 GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLA-DQMISRIEYIHSK------NFIHRDVKPDNFLMGLGKK------  141 (299)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCCGGGEEECCGGG------
T ss_pred             CCEEEEEEEEcCCchhhhhhhccCCCcHHHHHHHH-HHHHHHHHHHHHC------CeeeccCCHhhccccccCC------
Confidence            46789999999999999998887 89999999999 7999999999999      999999998311    111      


Q ss_pred             HHHHHHHHHHhhHhHHHHhhhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~Nq  106 (186)
                          +..+..+|||.++.+.+.
T Consensus       142 ----~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_         142 ----GNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             ----TTCEEECCCSSCEECBCT
T ss_pred             ----CceeeeeccCcceecccc
Confidence                223455788888776553

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=3.2e-06  Score=68.22  Aligned_cols=57  Identities=7%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|......++.|+...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        82 ~~~~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~-~qi~~al~~lH~~------~iiHrDiKP  139 (277)
T d1o6ya_          82 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVI-ADACQALNFSHQN------GIIHRDVKP  139 (277)
T ss_dssp             SSEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             CCceEEEEEECCCCCEehhhhcccCCCCHHHHHHHH-HHHHHHHHHHHhC------CccCccccC
Confidence            345679999999 68999988877799999999999 7999999999988      999999997

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=7.3e-06  Score=67.87  Aligned_cols=84  Identities=10%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDL   87 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l   87 (186)
                      ...+-|||||.+ |.||.+++..++.|+...+..++ .||++.|.+.|+.      +.+||||||.-..=.    +  .-
T Consensus        78 ~~~~~~lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~-~qi~~al~ylH~~------~iiHrDiKp~Nil~~----~--~~  144 (307)
T d1a06a_          78 SGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI-FQVLDAVKYLHDL------GIVHRDLKPENLLYY----S--LD  144 (307)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTCSCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCGGGEEES----S--SS
T ss_pred             ECCEEEEEEeccCCCcHHHhhhcccCCCHHHHHHHH-HHHHHHHHhhhhc------eeeeEEecccceeec----c--cC
Confidence            345679999998 69999999876799999999999 7999999999998      999999998211000    0  00


Q ss_pred             HHHHHHHhhHhHHHHhhh
Q psy13596         88 TQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~N  105 (186)
                      .+..+...|||+++...+
T Consensus       145 ~~~~vkl~DFG~a~~~~~  162 (307)
T d1a06a_         145 EDSKIMISDFGLSKMEDP  162 (307)
T ss_dssp             TTCCEEECCC--------
T ss_pred             CCceEEEeccceeEEccC
Confidence            012244578998876543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.66  E-value=8.9e-06  Score=66.41  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..++-|||||.+ |.||..++...+.+|...+..++ .||+..|.+.|+.      +.+||||+|
T Consensus        81 ~~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~-~qi~~al~~lH~~------~ivHrDlkp  138 (277)
T d1phka_          81 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIM-RALLEVICALHKL------NIVHRDLKP  138 (277)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSG
T ss_pred             cCcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHHHc------CCccccccc
Confidence            456779999999 78999999877799999999999 7999999999988      999999997

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9e-06  Score=66.71  Aligned_cols=56  Identities=9%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.+|..+....+ .|+...+..++ .||++.|.+.|+.      +.+||||||
T Consensus        81 ~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~-~qi~~gL~ylH~~------~ivHrDiKp  138 (288)
T d2jfla1          81 ENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVC-KQTLDALNYLHDN------KIIHRDLKA  138 (288)
T ss_dssp             TTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             CCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------CEEEeecCh
Confidence            35678999998 789999987766 79999999999 7999999999998      999999998

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1e-05  Score=66.45  Aligned_cols=57  Identities=12%  Similarity=0.043  Sum_probs=51.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.||.++....+.|+...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        79 ~~~~~~ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~-~qi~~al~ylH~~------~iiHrDiKp  136 (288)
T d1uu3a_          79 DDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYT-AEIVSALEYLHGK------GIIHRDLKP  136 (288)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSG
T ss_pred             ECCEEEEEEEccCCCCHHHhhhccCCCCHHHHHHHH-HHHHHHHHhhccc------cEEcCcCCc
Confidence            346679999998 57999998877899999999999 7999999999999      999999998

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.2e-05  Score=65.09  Aligned_cols=56  Identities=13%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+=|||||.+ |.+|.+++...++|+...+..++ .||++.|.+.|+.      +.+||||||
T Consensus        78 ~~~~~ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~-~qi~~al~~lH~~------~ivHrDiKp  134 (263)
T d2j4za1          78 ATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYI-TELANALSYCHSK------RVIHRDIKP  134 (263)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHT------TCCCCCCCG
T ss_pred             CCEEEEEEeecCCCcHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceeeeeecc
Confidence            45678999998 57999999877799999999999 7999999999998      999999998

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.4e-05  Score=64.99  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhh--HHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ--AVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~--~~~r~i~~   72 (186)
                      +..+=|||||.+ |.+|.++...++.|+...+..++ .|+++.|.+.|+.      +  .+||||||
T Consensus        83 ~~~~~~ivmE~~~~g~L~~~l~~~~~~~~~~~~~~~-~qi~~gl~yLH~~------~~~IiHrDiKp  142 (270)
T d1t4ha_          83 GKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWC-RQILKGLQFLHTR------TPPIIHRDLKC  142 (270)
T ss_dssp             SCEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHTS------SSCCCCSCCCG
T ss_pred             cCCEEEEEEeCCCCCcHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHC------CCCEEeCCcCh
Confidence            455679999998 67999999877799999999999 7999999999998      6  99999998

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.3e-05  Score=66.35  Aligned_cols=53  Identities=15%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             eeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +-|||||.+|.+|..+.. +++|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        97 ~~~lv~e~~~~~l~~~~~-~~~l~~~~~~~~~-~qi~~aL~~LH~~------~IiHrDiKp  149 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMK-HEKLGEDRIQFLV-YQMLKGLRYIHAA------GIIHRDLKP  149 (346)
T ss_dssp             CCEEEEECCSEEHHHHHH-HCCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCG
T ss_pred             eEEEEEecccccHHHHHH-hccccHHHHHHHH-HHHHHHHHHHHhC------CCcccccCc
Confidence            458999999999999886 4589999999999 7999999999998      999999997

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4.6e-06  Score=68.03  Aligned_cols=77  Identities=6%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH-HHHHHHHHHHH
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR-RKEALSAANDL   87 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~-rk~a~~s~~~l   87 (186)
                      .++-|||||.+ |.||.+++..++.||...+..+. .||++.|.+.|+.      +.+||||||.-.. ..         
T Consensus        75 ~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~i~-~qi~~al~ylH~~------~IiHrDiKp~NILl~~---------  138 (271)
T d1nvra_          75 GNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF-HQLMAGVVYLHGI------GITHRDIKPENLLLDE---------  138 (271)
T ss_dssp             TTEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCCGGGEEECT---------
T ss_pred             CceeEEEEeccCCCcHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHc------CCccCcccHHHEEECC---------
Confidence            35678999998 67999988755589999999999 7999999999998      9999999982110 00         


Q ss_pred             HHHHHHHhhHhHHHHh
Q psy13596         88 TQALVDHLNVGVAQAY  103 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y  103 (186)
                       +..+...|||+++..
T Consensus       139 -~~~~KL~DFG~a~~~  153 (271)
T d1nvra_         139 -RDNLKISDFGLATVF  153 (271)
T ss_dssp             -TCCEEECCCTTCEEC
T ss_pred             -CCCEEEccchhheee
Confidence             112456788988754

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.1e-05  Score=67.47  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..+-|||||.+ |.||.++....+  +||...+..+. .|++..|.+.|+.      +.+||||||
T Consensus        80 ~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~-~qi~~al~ylH~~------~iiHRDiKp  139 (335)
T d2ozaa1          80 GRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM-KSIGEAIQYLHSI------NIAHRDVKP  139 (335)
T ss_dssp             TEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             CCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHH-HHHHHHHHHHHHc------CCccccccc
Confidence            456779999999 789999988764  69999999999 7999999999998      999999997

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.4e-05  Score=65.06  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..-+||||.+ |.||.+++...+ +|+...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        76 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~-~qi~~gl~yLH~~------~ivHrDlKp  132 (276)
T d1uwha_          76 PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIA-RQTAQGMDYLHAK------SIIHRDLKS  132 (276)
T ss_dssp             SSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             cEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHhcC------CEeccccCH
Confidence            3458999998 589999988776 89999999999 7999999999998      999999997

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.6e-05  Score=66.05  Aligned_cols=56  Identities=9%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.+|......++ +|+...+..++ .||+..|.+.|+.      +.+||||||
T Consensus        73 ~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~-~qi~~al~yLH~~------~iiHrDlKp  130 (321)
T d1tkia_          73 MEELVMIFEFISGLDIFERINTSAFELNEREIVSYV-HQVCEALQFLHSH------NIGHFDIRP  130 (321)
T ss_dssp             TTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCG
T ss_pred             CCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHc------CCCcccccc
Confidence            35679999998 479999988777 89999999999 6999999999988      999999998

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=97.47  E-value=1.3e-05  Score=67.78  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=60.9

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAAND   86 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~   86 (186)
                      ...+-|||||.+ |.+|.+.+...+ +|+...+..++ .|++..|.+.|+.      +.+||||||.-..    +   ..
T Consensus        97 ~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~-~qi~~aL~ylH~~------~iiHRDiKp~NIL----l---~~  162 (352)
T d1koba_          97 DKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYM-RQACEGLKHMHEH------SIVHLDIKPENIM----C---ET  162 (352)
T ss_dssp             CSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCGGGEE----E---SS
T ss_pred             ECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHC------Ceeeccccccccc----c---cc
Confidence            346679999998 589988877677 89999999999 7999999999988      9999999982110    0   00


Q ss_pred             HHHHHHHHhhHhHHHHhh
Q psy13596         87 LTQALVDHLNVGVAQAYL  104 (186)
Q Consensus        87 l~~~Lv~~Ln~gvs~~y~  104 (186)
                      -.+..+..+|||++..+.
T Consensus       163 ~~~~~vkL~DFGla~~~~  180 (352)
T d1koba_         163 KKASSVKIIDFGLATKLN  180 (352)
T ss_dssp             TTCCCEEECCCTTCEECC
T ss_pred             cCCCeEEEeecccceecC
Confidence            001123457888886544

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=97.46  E-value=1.5e-05  Score=67.20  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=50.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.||.+++...+ +|+...+..++ .||+..|.+.|+.      +.+||||||
T Consensus        95 ~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~-~qi~~aL~ylH~~------~iiHrDiKp  152 (350)
T d1koaa2          95 DNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYM-RQVCKGLCHMHEN------NYVHLDLKP  152 (350)
T ss_dssp             TTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCG
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHhc------CCeeeeech
Confidence            45779999998 689998886555 89999999999 7999999999999      999999998

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.4e-05  Score=63.65  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.||.++...++.|+...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        84 ~~~~~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~-~qi~~al~yLH~~------~ivHrDiKp  141 (293)
T d1jksa_          84 NKTDVILILELVAGGELFDFLAEKESLTEEEATEFL-KQILNGVYYLHSL------QIAHFDLKP  141 (293)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             ECCEEEEEEEcCCCccccchhccccccchhHHHHHH-HHHHHHHHhhhhc------ceeeccccc
Confidence            345678999997 68999999877799999999999 7999999999999      999999997

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2e-05  Score=64.05  Aligned_cols=53  Identities=13%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             eEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         13 RFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+||||.+ |.||.++...++.|+...++.++ .|++..|.+.|+.      +.+||||||
T Consensus        82 ~~lvmE~~~~g~L~~~l~~~~~l~~~~~~~i~-~qi~~gl~ylH~~------~iiHrDlKp  135 (277)
T d1xbba_          82 WMLVMEMAELGPLNKYLQQNRHVKDKNIIELV-HQVSMGMKYLEES------NFVHRDLAA  135 (277)
T ss_dssp             EEEEEECCTTEEHHHHHHHCTTCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSG
T ss_pred             EEEEEEcCCCCcHHHHHhhccCCCHHHHHHHH-HHHHHHHhhHHhC------CcccCCCcc
Confidence            47999999 78999998866699999999999 7999999999998      899999998

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.8e-05  Score=64.19  Aligned_cols=56  Identities=9%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             eeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-|||||.+ |.||.+++.++++|+..++..++ .|++..|.+.|++     .+.+||||||
T Consensus        77 ~~~~iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~-~qil~aL~yLH~~-----~~IiHRDiKP  133 (322)
T d1s9ja_          77 GEISICMEHMDGGSLDQVLKKAGRIPEQILGKVS-IAVIKGLTYLREK-----HKIMHRDVKP  133 (322)
T ss_dssp             SEEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHH-----HCCCCSCCSG
T ss_pred             CEEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHHh-----CCEEccccCH
Confidence            4568999975 68999999988899999999999 7999999999986     4799999998

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=2.6e-05  Score=64.79  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-||||+..|.||.++.. .++||...+..++ .|||..|.+.|+.      +.+||||||
T Consensus        83 ~~~~~l~~~~~~g~L~~~l~-~~~l~~~~i~~i~-~qil~al~yLH~~------~iiHRDIKp  137 (345)
T d1pmea_          83 MKDVYLVTHLMGADLYKLLK-TQHLSNDHICYFL-YQILRGLKYIHSA------NVLHRDLKP  137 (345)
T ss_dssp             CCCEEEEEECCCEEHHHHHH-HCCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCG
T ss_pred             cceEEEEEeecCCchhhhhh-cCCCCHHHHHHHH-HHHHHHHHHHHHC------CCcCCCCCc
Confidence            34679999999999999986 3489999999999 7999999999998      999999998

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.41  E-value=2.9e-05  Score=65.72  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH-HHHHHHHHHHH
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR-RKEALSAANDL   87 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~-rk~a~~s~~~l   87 (186)
                      ..+-|||||.+ |.+|..++...+.|+...+..++ .||+..|.+.|+.      +.+||||||.=.. ..         
T Consensus        79 ~~~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~-~qi~~aL~ylH~~------~iiHrDlKP~NILl~~---------  142 (364)
T d1omwa3          79 PDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYA-AEIILGLEHMHNR------FVVYRDLKPANILLDE---------  142 (364)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSGGGEEECS---------
T ss_pred             CCEEEEEEEecCCCcHHHHHHhcccccHHHHHHHH-HHHHHHHHHHHHC------CccceeeccceeEEcC---------
Confidence            45678999999 59999999877799999999999 7999999999999      9999999982110 00         


Q ss_pred             HHHHHHHhhHhHHHHhhhh
Q psy13596         88 TQALVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        88 ~~~Lv~~Ln~gvs~~y~Nq  106 (186)
                       +..+...|||++..+.+.
T Consensus       143 -~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3         143 -HGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             -SSCEEECCCTTCEECSSS
T ss_pred             -CCcEEEeeeceeeecCCC
Confidence             112345678887655443

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.6e-05  Score=64.59  Aligned_cols=57  Identities=12%  Similarity=0.049  Sum_probs=52.0

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|..+....+.|++..+..++ .||+..|.+.|+.      +.+||||||
T Consensus        76 ~~~~~~iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~-~qil~al~ylH~~------~iiHRDlKP  133 (337)
T d1o6la_          76 THDRLCFVMEYANGGELFFHLSRERVFTEERARFYG-AEIVSALEYLHSR------DVVYRDIKL  133 (337)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHT------TCBCCCCCG
T ss_pred             cccccccceeccCCCchhhhhhcccCCcHHHHHHHH-HHHhhhhhhhhhc------CccccccCH
Confidence            456789999998 58999998877799999999999 7999999999999      999999998

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.5e-05  Score=63.31  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.+|..++..+++|+...+..++ .|++..|.+.|++      +.+||||||
T Consensus        75 ~~~~yivmEy~~~g~L~~~i~~~~~~~e~~~~~~~-~qi~~al~ylH~~------~iiHrDikp  131 (320)
T d1xjda_          75 KENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYA-AEIILGLQFLHSK------GIVYRDLKL  131 (320)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHH-HHHHHHHHHHHHT------TCBCCCCCG
T ss_pred             CCceeEEEeecCCCcHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHhC------CeeeccCcc
Confidence            46789999987 57999999877799999999999 7999999999999      999999997

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=4.6e-05  Score=63.38  Aligned_cols=57  Identities=5%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CCeeeEEeeccccccHHHHHHH---cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDE---HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~---~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +..|-+||||.++.++...+..   .+ .|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        90 ~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~-~qil~aL~yLH~~------~IiHrDiKp  150 (350)
T d1q5ka_          90 DEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQLFRSLAYIHSF------GICHRDIKP  150 (350)
T ss_dssp             SCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHH-HHHHHHHHHHHTT------TEECCCCCG
T ss_pred             CceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHH-HHHHHHHHHHHhc------CCcccCCCc
Confidence            4557799999999887666542   34 79999999999 7999999999998      999999998

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=4.6e-05  Score=62.65  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .++-|||||.+ |.+|.++... +.|+...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        89 ~~~~~ivmEy~~gg~L~~~~~~-~~l~~~~~~~i~-~qi~~aL~yLH~~------~iiHrDiKp  144 (293)
T d1yhwa1          89 GDELWVVMEYLAGGSLTDVVTE-TCMDEGQIAAVC-RECLQALEFLHSN------QVIHRDIKS  144 (293)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHH-SCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             CCEEEEEEEecCCCcHHHHhhc-cCCCHHHHHHHH-HHHHHHHHHHHHC------CCcccCCcH
Confidence            35678999988 6899998763 479999999999 7999999999998      999999998

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=4.1e-05  Score=62.76  Aligned_cols=56  Identities=14%  Similarity=0.136  Sum_probs=50.5

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...-|||||.+ |.+|..+....+ .|+...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        99 ~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~-~qia~gl~yLH~~------~iiHrDlKp  156 (299)
T d1jpaa_          99 STPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGML-RGIAAGMKYLADM------NYVHRDLAA  156 (299)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             CCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHH-HHHHHHHHHHhhC------CCccCcccc
Confidence            35679999999 679999888766 89999999999 7999999999998      999999997

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=4e-05  Score=62.62  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             eeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .-|||||.+. .||.+++...+ .||...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        82 ~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~-~qi~~gL~ylH~~------~iiHrDlKp  137 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL-HQVSMGMKYLEEK------NFVHRDLAA  137 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             eEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHH-HHHHHHHHHHHhC------CeecCcCch
Confidence            3589999985 79999887666 89999999999 7999999999998      999999997

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=8e-05  Score=60.19  Aligned_cols=84  Identities=11%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             eeeEEeeccc-cccHHHHHHHc---C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHH
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEH---K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAA   84 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~---~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~   84 (186)
                      .+=|||||.+ |.||.+++..+   + .|+...+..++ .|+++.|.+.|++ .....+.+||||||.-. -..      
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~-~qi~~al~ylH~~-~~~~~~IiHrDiKp~NIll~~------  149 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVM-TQLTLALKECHRR-SDGGHTVLHRDLKPANVFLDG------  149 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHH-CC---------CCGGGEEECT------
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHH-HHHHHHHHHHHHh-cCCCCCEEeCcCchhhcCcCC------
Confidence            3458999999 68999998753   3 69999999999 7999999999987 11122499999998110 000      


Q ss_pred             HHHHHHHHHHhhHhHHHHhhhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~Nq  106 (186)
                          +..+...|||+++.+.+.
T Consensus       150 ----~~~vkl~DFG~a~~~~~~  167 (269)
T d2java1         150 ----KQNVKLGDFGLARILNHD  167 (269)
T ss_dssp             ----TSCEEECCHHHHHHC---
T ss_pred             ----CCcEEEeeccceeecccC
Confidence                112445778888766543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.2e-05  Score=61.09  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=48.6

Q ss_pred             eeeEEeeccccccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..-+||||.++.++..+.... + .|+...+..++ .||++.|.+.|+.      +.+||||||
T Consensus        74 ~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~-~qil~~L~yLH~~------~IiHrDiKp  130 (298)
T d1gz8a_          74 NKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSH------RVLHRDLKP  130 (298)
T ss_dssp             TEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             cceeEEEeecCCchhhhhhhhcccCCCHHHHHHHH-HHHHHHHHHhhcC------CEEccccCc
Confidence            467999999998877766554 4 79999999999 7999999999998      999999998

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=7.3e-05  Score=59.81  Aligned_cols=79  Identities=9%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHHHH
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAAND   86 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~~~   86 (186)
                      .+.-|||||.+ |.+|.++..... .|+..+++.++ .|+++.|.+.|+.      +.+||||||.-. -..        
T Consensus        72 ~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~-~qia~gl~~lH~~------~iiHrDlKp~Nill~~--------  136 (263)
T d1sm2a_          72 QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC-LDVCEGMAYLEEA------CVIHRDLAARNCLVGE--------  136 (263)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCTTCSGGGEEECG--------
T ss_pred             CCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHH-HHHHHHHHhhhcc------ceeecccchhheeecC--------
Confidence            35678999999 689999887666 89999999999 7999999999998      999999998211 000        


Q ss_pred             HHHHHHHHhhHhHHHHhhh
Q psy13596         87 LTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        87 l~~~Lv~~Ln~gvs~~y~N  105 (186)
                        +..+...|||+++.+.+
T Consensus       137 --~~~~Kl~DFGla~~~~~  153 (263)
T d1sm2a_         137 --NQVIKVSDFGMTRFVLD  153 (263)
T ss_dssp             --GGCEEECSCC-------
T ss_pred             --CCCeEecccchheeccC
Confidence              22344566787765544

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=5.8e-05  Score=60.74  Aligned_cols=80  Identities=9%  Similarity=0.100  Sum_probs=61.3

Q ss_pred             CCeeeEEeecccc--ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHH--HHHHHHHH
Q psy13596          9 GNSYRFIIISKFG--SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVR--RKEALSAA   84 (186)
Q Consensus         9 ~~~yrfmVmerlG--~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~--rk~a~~s~   84 (186)
                      ..++-++|||.+.  .++.++....+.|+...+..++ .|++..|.+.|+.      +.+||||||.-..  ..      
T Consensus        80 ~~~~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~-~qi~~al~~lH~~------~iiHrDiKp~NIll~~~------  146 (273)
T d1xwsa_          80 RPDSFVLILERPEPVQDLFDFITERGALQEELARSFF-WQVLEAVRHCHNC------GVLHRDIKDENILIDLN------  146 (273)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSGGGEEEETT------
T ss_pred             eCCeEEEEEEeccCcchHHHHHhccCCCCHHHHHHHH-HHHHHHHHHHHHC------CCccccCcccceEEecC------
Confidence            3456799999983  6888888877799999999999 7999999999998      9999999982110  00      


Q ss_pred             HHHHHHHHHHhhHhHHHHhhh
Q psy13596         85 NDLTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        85 ~~l~~~Lv~~Ln~gvs~~y~N  105 (186)
                          ...+..+|||++....+
T Consensus       147 ----~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_         147 ----RGELKLIDFGSGALLKD  163 (273)
T ss_dssp             ----TTEEEECCCTTCEECCS
T ss_pred             ----CCeEEECccccceeccc
Confidence                12355778898865443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=6.2e-05  Score=61.79  Aligned_cols=55  Identities=9%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-+++|+..|.||.++.. .++|+...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~-~~~l~e~~~~~i~-~qil~aL~~LH~~------giiHrDiKp  149 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVK-CQKLTDDHVQFLI-YQILRGLKYIHSA------DIIHRDLKP  149 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHT-TCCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCCCCCG
T ss_pred             CceEEEEEeecCCchhhhcc-cccccHHHHHHHH-HHHHHHHHHHHhC------CCcccccCC
Confidence            34678899999999999885 3489999999999 7999999999998      999999997

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=97.18  E-value=7.2e-05  Score=60.01  Aligned_cols=80  Identities=13%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHHHH
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAAND   86 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~~~   86 (186)
                      ...+-++||+.++.++...+..+. +|+...+..++ .|+++.|.+.|..      +.+||||||.=. -..        
T Consensus        71 ~~~~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~~L~~LH~~------~IvHrDiKp~NIll~~--------  135 (286)
T d1ob3a_          71 TKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFL-LQLLNGIAYCHDR------RVLHRDLKPQNLLINR--------  135 (286)
T ss_dssp             CSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCGGGEEECT--------
T ss_pred             cCCceeEEEEeehhhhHHHHHhhcCCcchhhhHHHH-HHHHHHHHHhccC------cEEecCCCCceeeEcC--------
Confidence            346678999999999988888776 89999999999 7999999999998      999999998111 000        


Q ss_pred             HHHHHHHHhhHhHHHHhhh
Q psy13596         87 LTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        87 l~~~Lv~~Ln~gvs~~y~N  105 (186)
                        +..+..+|+|.+..+..
T Consensus       136 --~~~~kl~DfG~a~~~~~  152 (286)
T d1ob3a_         136 --EGELKIADFGLARAFGI  152 (286)
T ss_dssp             --TSCEEECCTTHHHHHCC
T ss_pred             --CCCEEecccccceeccc
Confidence              11234567888776544

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=7.2e-05  Score=60.47  Aligned_cols=80  Identities=8%  Similarity=0.095  Sum_probs=59.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLT   88 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~~rk~a~~s~~~l~   88 (186)
                      ..+=+||||.+..++...+...+ .|+...+..++ .||++.|.+.|+.      +.+||||||.-..-.         .
T Consensus        72 ~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~-~qil~aL~~lH~~------~iiHrDiKp~NIli~---------~  135 (299)
T d1ua2a_          72 KSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYM-LMTLQGLEYLHQH------WILHRDLKPNNLLLD---------E  135 (299)
T ss_dssp             TTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHH-HHHHHHHHHHHHT------TCCCCCCCGGGEEEC---------T
T ss_pred             CCceeehhhhhcchHHhhhhhcccCCCHHHHHHHH-HHHHHHHHHhhcc------ceecccCCcceEEec---------C
Confidence            34568999999877766666556 89999999999 7999999999999      999999998111000         0


Q ss_pred             HHHHHHhhHhHHHHhhh
Q psy13596         89 QALVDHLNVGVAQAYLN  105 (186)
Q Consensus        89 ~~Lv~~Ln~gvs~~y~N  105 (186)
                      +..+...|||.++.+.+
T Consensus       136 ~~~~KL~DFG~a~~~~~  152 (299)
T d1ua2a_         136 NGVLKLADFGLAKSFGS  152 (299)
T ss_dssp             TCCEEECCCGGGSTTTS
T ss_pred             CCccccccCccccccCC
Confidence            11234568888876544

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=6.6e-05  Score=60.19  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=49.3

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+-|||||.+ |.+|.++..... .++...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        80 ~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~-~qi~~gl~ylH~~------~iiHrDlKp  136 (273)
T d1mp8a_          80 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYA-YQLSTALAYLESK------RFVHRDIAA  136 (273)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSG
T ss_pred             CeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHH-HHHHHHhhhhccc------Ceeccccch
Confidence            4678999998 588888877666 89999999999 7999999999999      999999998

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=7.6e-05  Score=61.67  Aligned_cols=56  Identities=11%  Similarity=0.130  Sum_probs=47.0

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+..++-..+...+ .|+...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        87 ~~~~~iv~E~~~~g~l~~~~~~~~~l~e~~~~~i~-~qi~~aL~yLH~~------~iiHrDiKp  143 (309)
T d1u5ra_          87 EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVT-HGALQGLAYLHSH------NMIHRDVKA  143 (309)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHH-HHHHHHHHHHHHT------TCBCCCCSG
T ss_pred             CCEEEEEEEecCCCchHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEeccCCCc
Confidence            45678999997554444555455 89999999999 7999999999999      999999997

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00012  Score=60.56  Aligned_cols=57  Identities=12%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|||||.+ |.+|..+....+.++...+..++ .|++..|.+.|+.      +.+||||||
T Consensus        75 ~~~~~~ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~-~qi~~al~~lH~~------~iiHrDiKp  132 (316)
T d1fota_          75 DAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYA-AEVCLALEYLHSK------DIIYRDLKP  132 (316)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHH-HHHHHHHHHHHTT------TEECCCCCG
T ss_pred             eCCeeeeEeeecCCccccccccccccccccHHHHHH-HHHHHhhhhhccC------cEEccccCc
Confidence            346789999998 67888888866689999999999 7999999999998      999999997

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00013  Score=61.29  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             CCeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-|+||+.+ |.+|.......+.|+...+..++ .||+..|.+.|+.      +.+||||||
T Consensus       112 ~~~~~~~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~-~qi~~aL~yLH~~------~iiHRDIKP  169 (350)
T d1rdqe_         112 DNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA-AQIVLTFEYLHSL------DLIYRDLKP  169 (350)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             cccccccccccccccchhhhHhhcCCCCHHHHHHHH-HHHHHHHHHHHhC------CEecCcCCH
Confidence            345667888876 57888888877799999999999 7999999999988      999999998

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00014  Score=59.11  Aligned_cols=78  Identities=17%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHHH
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAAN   85 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~~   85 (186)
                      ...-|||||.+. .+|..++..+.  .++...++.++ .|+++.|.+.|+.      +.+||||||.=. ...       
T Consensus        85 ~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~-~qi~~gL~yLH~~------~iiHrDlKp~NILl~~-------  150 (287)
T d1opja_          85 EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA-TQISSAMEYLEKK------NFIHRDLAARNCLVGE-------  150 (287)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSGGGEEECG-------
T ss_pred             CCeeEEEeecccCcchHHHhhhccccchHHHHHHHHH-HHHHHHHHHHHHC------CcccCccccCeEEECC-------
Confidence            456789999884 68888877654  79999999999 7999999999998      999999998111 000       


Q ss_pred             HHHHHHHHHhhHhHHHHhh
Q psy13596         86 DLTQALVDHLNVGVAQAYL  104 (186)
Q Consensus        86 ~l~~~Lv~~Ln~gvs~~y~  104 (186)
                         +..+...|||+++...
T Consensus       151 ---~~~~Kl~DFG~a~~~~  166 (287)
T d1opja_         151 ---NHLVKVADFGLSRLMT  166 (287)
T ss_dssp             ---GGCEEECCCCCTTTCC
T ss_pred             ---CCcEEEccccceeecC
Confidence               2235567888887543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00016  Score=58.21  Aligned_cols=57  Identities=12%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             CCeeeEEeeccccccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          9 GNSYRFIIISKFGSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         9 ~~~yrfmVmerlG~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ...+-+||||.++.++-.++... . .+|...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~qi~~aL~yLH~~------~ivHrDiKp  144 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMM-FQLLRGLDFLHSH------RVVHRDLKP  144 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHH-HHHHHHHHHHHHT------TCCCCCCCG
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHH-HHHHHHHHHHHhC------CEEecCCCc
Confidence            34678999999987776655544 3 79999999999 7999999999998      999999998

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00015  Score=59.77  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-----------------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhH
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-----------------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQA   65 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-----------------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~   65 (186)
                      ..+-|||||.+ |.||.++.....                       .++...++.++ .|+++.|.+.|+.      +.
T Consensus       113 ~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~gl~yLH~~------~I  185 (325)
T d1rjba_         113 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFA-YQVAKGMEFLEFK------SC  185 (325)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHH-HHHHHHHHHHHHT------TE
T ss_pred             CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHH-HHHHHHHHHHHhC------Ce
Confidence            35679999998 689999987543                       36778899999 7999999999998      99


Q ss_pred             HHhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHhhh
Q psy13596         66 VTSVIIGLEV-RRKEALSAANDLTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        66 ~~r~i~~~e~-~rk~a~~s~~~l~~~Lv~~Ln~gvs~~y~N  105 (186)
                      +||||||.=. ...          +..+...|||+|+....
T Consensus       186 iHRDlKp~Nill~~----------~~~~Kl~DFGla~~~~~  216 (325)
T d1rjba_         186 VHRDLAARNVLVTH----------GKVVKICDFGLARDIMS  216 (325)
T ss_dssp             EETTCSGGGEEEET----------TTEEEECCCGGGSCGGG
T ss_pred             eeccCchhcccccc----------CCeEEEeeccccccccC
Confidence            9999998211 000          22345668898865443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00016  Score=58.56  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             eeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +=+||||.++.++-..+...+ .|+...+..++ .|+++.|.+.|+.      +.+||||||
T Consensus        91 ~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~-~qil~~l~~lH~~------~ivHrDlKp  145 (318)
T d3blha1          91 SIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVM-QMLLNGLYYIHRN------KILHRDMKA  145 (318)
T ss_dssp             CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCCG
T ss_pred             eEEEEEeccCCCccchhhhcccccccHHHHHHH-HHHHHHHHHhccC------CEEecCcCc
Confidence            457999999999988888777 89999999999 7999999999998      999999997

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=96.68  E-value=0.00013  Score=59.61  Aligned_cols=55  Identities=9%  Similarity=0.117  Sum_probs=47.0

Q ss_pred             CCCeeeEEeecccc-ccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596          8 NGNSYRFIIISKFG-SDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus         8 ~~~~yrfmVmerlG-~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....+-+||||.++ .+|..+.   ++|+...+..++ .||+..|.+.|+.      +.+||||||
T Consensus       102 ~~~~~~~~v~e~~~~~~L~~~~---~~l~e~~i~~i~-~qil~aL~~LH~~------gIvHrDiKp  157 (328)
T d3bqca1         102 PVSRTPALVFEHVNNTDFKQLY---QTLTDYDIRFYM-YEILKALDYCHSM------GIMHRDVKP  157 (328)
T ss_dssp             TTTCSEEEEEECCCSCBGGGTT---TSCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             cCCCceeEEEeecCCCcHHHHh---cCCCHHHHHHHH-HHHHHHHHHHhhc------ccccccccc
Confidence            34567899999887 5666553   389999999999 7999999999998      999999998

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00028  Score=56.83  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             eeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGL   73 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~   73 (186)
                      ..-|+|||.+ |.+|.+++...               . .|+...++.++ .|+++.|.+.|+.      +.+||||||.
T Consensus        91 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~gl~ylH~~------~ivHrDlKp~  163 (299)
T d1ywna1          91 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS-FQVAKGMEFLASR------KCIHRDLAAR  163 (299)
T ss_dssp             SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCGG
T ss_pred             CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHH-HHHHHHHHHHHhC------CCcCCcCCcc
Confidence            4568999998 58999998743               2 47888999999 7999999999998      9999999982


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhhHhHHHHhhh
Q psy13596         74 EV-RRKEALSAANDLTQALVDHLNVGVAQAYLN  105 (186)
Q Consensus        74 e~-~rk~a~~s~~~l~~~Lv~~Ln~gvs~~y~N  105 (186)
                      =. ...          +..+...|||+++...+
T Consensus       164 NILl~~----------~~~~Kl~DFGla~~~~~  186 (299)
T d1ywna1         164 NILLSE----------KNVVKICDFGLARDIYK  186 (299)
T ss_dssp             GEEECG----------GGCEEECC------CCS
T ss_pred             ceeECC----------CCcEEEccCcchhhccc
Confidence            11 000          22344578888875443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00037  Score=56.57  Aligned_cols=56  Identities=11%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             CeeeEEeeccc-cccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|||||.+ |.+|.++....               + +|+..+++.++ .||++.|.+.|+.      +.+||||||
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~al~ylH~~------~ivHrDiKp  163 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCA-YQVARGMEYLASK------KCIHRDLAA  163 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSG
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHH-HHHHHHHHHhhhC------CEEeeeecc
Confidence            45789999999 57888887643               2 58999999999 7999999999999      999999997

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00037  Score=57.80  Aligned_cols=54  Identities=6%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-|+|||.++.++...+.  +.|+...+..++ .|+|..|.+.|..      +.+||||||
T Consensus        94 ~~~~~iv~Ey~~~~l~~~~~--~~~~~~~i~~~~-~qil~gl~~LH~~------giiHrDlKP  147 (355)
T d2b1pa1          94 FQDVYLVMELMDANLCQVIQ--MELDHERMSYLL-YQMLCGIKHLHSA------GIIHRDLKP  147 (355)
T ss_dssp             CCEEEEEEECCSEEHHHHHT--SCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             CceeEEEEeccchHHHHhhh--cCCCHHHHHHHH-HHHHHHHHHhhhc------ccccccCCc
Confidence            46789999999999877663  489999999999 7999999999999      999999997

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00019  Score=57.68  Aligned_cols=75  Identities=12%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             eEEeeccc-cccHHHHHHHc-C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhhhHH-HHHHHHHHHHHHH
Q psy13596         13 RFIIISKF-GSDLQKLLDEH-K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV-RRKEALSAANDLT   88 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~-~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~~e~-~rk~a~~s~~~l~   88 (186)
                      -|||||.+ |.+|.+++... + +|+...++.|+ .|+.+.|.+.|+.      +.+||||||.-. ...          
T Consensus        82 ~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~-~qi~~gl~~lH~~------~ivHrDiKp~NIll~~----------  144 (272)
T d1qpca_          82 IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA-AQIAEGMAFIEER------NYIHRDLRAANILVSD----------  144 (272)
T ss_dssp             CEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSGGGEEECT----------
T ss_pred             eEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHH-HHHHHHHHHHHhC------CcccCccchhheeeec----------
Confidence            48999998 57888866544 4 79999999999 7999999999998      999999997211 000          


Q ss_pred             HHHHHHhhHhHHHHhh
Q psy13596         89 QALVDHLNVGVAQAYL  104 (186)
Q Consensus        89 ~~Lv~~Ln~gvs~~y~  104 (186)
                      +..+...|||+++...
T Consensus       145 ~~~~Kl~DFGla~~~~  160 (272)
T d1qpca_         145 TLSCKIADFGLARLIE  160 (272)
T ss_dssp             TSCEEECCCTTCEECS
T ss_pred             ccceeeccccceEEcc
Confidence            1223456888886543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00057  Score=54.09  Aligned_cols=56  Identities=13%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             CeeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++||+.++...-..+..++ .++...+..+. .|+++.|.+.|..      +.+||||||
T Consensus        73 ~~~~~iv~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~q~~~aL~~lH~~------~IvHrDiKP  129 (292)
T d1unla_          73 DKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFL-FQLLKGLGFCHSR------NVLHRDLKP  129 (292)
T ss_dssp             SSEEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHH-HHHHHHHHHHHHT------TEECCCCSG
T ss_pred             ccceeEEeeeccccccccccccccccchhHHHHHH-HHHHHHHHHhhcC------CEeeecccC
Confidence            45667888877655444444555 89999999999 7999999999998      999999998

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00028  Score=56.71  Aligned_cols=53  Identities=11%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             eEEeeccc-cccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         13 RFIIISKF-GSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      -+||||.+ |.+|.++....+  .|+..+++.++ .|+++.|.+.|+.      +.+||||+|
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~-~~i~~al~ylH~~------~ivH~dlkp  131 (262)
T d1byga_          76 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS-LDVCEAMEYLEGN------NFVHRDLAA  131 (262)
T ss_dssp             CEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSG
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHH-HHHHhhccccccC------ceeccccch
Confidence            38999999 889999887554  59999999999 7999999999998      999999997

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00045  Score=55.26  Aligned_cols=55  Identities=18%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             eeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..-|||||.+ |.+|..+..... .++...++.++ .||++.|.+.|+.      +.+||||+|
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~-~qi~~gl~~LH~~------~iiH~dlk~  128 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMC-KDVCEAMEYLESK------QFLHRDLAA  128 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHH-HHHHHHHHHHHHT------TBCCSCCSG
T ss_pred             CceEEEEEccCCCcHHHhhhccccCCcHHHHHHHH-HHHHHHHHHHhhc------Ccccccccc
Confidence            3469999998 577888877666 89999999999 7999999999998      999999987

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0007  Score=55.27  Aligned_cols=55  Identities=18%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             eeeEEeeccccccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFGSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.++++...|.+|.+.+...+ .|+...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus        84 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-~qi~~gl~yLH~~------~iiHrDlKp  139 (317)
T d1xkka_          84 TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC-VQIAKGMNYLEDR------RLVHRDLAA  139 (317)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             CeeEEEEeccCCcccccccccccCCCHHHHHHHH-HHHHHHHHHHHHc------CcccCcchh
Confidence            4556677777899988888777 89999999999 7999999999999      999999997

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00065  Score=54.60  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....++|||.+ |.+|.+++.... .|+...++.++ .|+...|.+.|+.      +.+||||||
T Consensus        81 ~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-~~i~~gl~~lH~~------~iiHrDlKp  138 (283)
T d1mqba_          81 YKPMMIITEYMENGALDKFLREKDGEFSVLQLVGML-RGIAAGMKYLANM------NYVHRDLAA  138 (283)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCCG
T ss_pred             CCceEEEEEecccCcchhhhhcccccccHHHHHHHH-HHHHHhhhhcccc------ccccCcccc
Confidence            45678999987 567888777666 89999999999 7999999999999      999999997

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00083  Score=54.68  Aligned_cols=56  Identities=14%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC------------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK------------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVI   70 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~------------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i   70 (186)
                      ....+||||.+ |.+|..+.....                  .++...++.++ .||++.|.+.|++      +.+||||
T Consensus        99 ~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qi~~gl~~LH~~------~ivHrDL  171 (311)
T d1t46a_          99 GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFS-YQVAKGMAFLASK------NCIHRDL  171 (311)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCC
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHhC------Ceeeccc
Confidence            35679999999 688988876432                  58899999999 7999999999999      9999999


Q ss_pred             hh
Q psy13596         71 IG   72 (186)
Q Consensus        71 ~~   72 (186)
                      ||
T Consensus       172 Kp  173 (311)
T d1t46a_         172 AA  173 (311)
T ss_dssp             SG
T ss_pred             cc
Confidence            87

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.00085  Score=53.89  Aligned_cols=53  Identities=11%  Similarity=0.056  Sum_probs=46.6

Q ss_pred             eEEeeccc-cccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         13 RFIIISKF-GSDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        13 rfmVmerl-G~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      -+||||.+ |.+|.+.+.... .|+...++.++ .|+.+.|.+.|++      +.+||||||
T Consensus        85 ~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~-~qi~~gl~ylH~~------~iiHrDikp  139 (273)
T d1u46a_          85 MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYA-VQVAEGMGYLESK------RFIHRDLAA  139 (273)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCCG
T ss_pred             hheeeeeecCcchhhhhhcccCCCCHHHHHHHH-HHHHHHHHHhhhC------CEeeeeecH
Confidence            46888887 578887777666 89999999999 7999999999998      999999997

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0013  Score=53.42  Aligned_cols=60  Identities=3%  Similarity=0.014  Sum_probs=49.1

Q ss_pred             eeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhh--hhhHHHhhhhh
Q psy13596         11 SYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNW--QKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~--~~~~~~r~i~~   72 (186)
                      ..-|||||.+ |.+|.++...+ +++...++.++ +++...|.+.|..-.++  .++.+||||||
T Consensus        74 ~~~~lv~Ey~~~g~L~~~l~~~-~l~~~~~~~~~-~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp  136 (303)
T d1vjya_          74 TQLWLVSDYHEHGSLFDYLNRY-TVTVEGMIKLA-LSTASGLAHLHMEIVGTQGKPAIAHRDLKS  136 (303)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHC-CBCHHHHHHHH-HHHHHHHHHHHCCBCSTTCBCEEECSCCCG
T ss_pred             eEEEEEEecccCCCHHHHHhcC-CCCHHHHHHHH-HHHHHHHHHHHHhhhhhccCCCeeccccCc
Confidence            4568999999 67999999743 78889999999 79999999999732211  26999999997

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0021  Score=52.53  Aligned_cols=55  Identities=11%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             eeeEEeecccc-ccHHHHHHHcC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEHK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      .+.|+|||.+. .+|.+++.... .++...++.++ .|+++.|.+.|+.      +.+||||||
T Consensus       102 ~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~-~qia~gL~~lH~~------~iiHrDLK~  158 (311)
T d1r0pa_         102 GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFG-LQVAKGMKFLASK------KFVHRDLAA  158 (311)
T ss_dssp             TEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSG
T ss_pred             CceEEEEEEeecCchhhhhccccccchHHHHHHHH-HHHHHhhhhhccc------CcccCCccH
Confidence            46789999996 78888877555 78888999999 7999999999998      999999997

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.003  Score=51.83  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..+-++|||.+ |.||......++.++...+..+. .|+++.|.+.|..      +.+||||||
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~-~Qi~~al~~lH~~------~ivHrDiKp  157 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYV-GEIVLALEHLHKL------GIIYRDIKL  157 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHT------TCCCCCCCG
T ss_pred             CCceeeeeecccccHHHHHHHhcccccHHHHHHHH-HHHHHHHHHhhcC------CEEeccCCc
Confidence            34677888886 47999998877789999999999 6999999999998      999999997

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0042  Score=50.24  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             eeeEEeecccc-ccHHHHHHHc---------------C-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         11 SYRFIIISKFG-SDLQKLLDEH---------------K-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        11 ~yrfmVmerlG-~dL~~l~~~~---------------~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ..-|||||.+. .+|.+++...               + +|+...++.++ .|++..|.+.|+.      +.+||||||
T Consensus        84 ~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~qia~gl~~lH~~------~iiHrDlkp  155 (309)
T d1fvra_          84 GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA-ADVARGMDYLSQK------QFIHRDLAA  155 (309)
T ss_dssp             TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHH-HHHHHHHHHHHHT------TEECSCCSG
T ss_pred             CeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHH-HHHHHHHHhhhcC------Ccccccccc
Confidence            45799999886 7898887532               3 79999999999 7999999999999      999999997

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0029  Score=51.19  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             eeEEeecccc-ccHHHHHHH-cC-CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFG-SDLQKLLDE-HK-EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG-~dL~~l~~~-~~-kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      --|+|||.+- .+|..++.. ++ .|+...++.++ .+++..|.+.|+.      +.+||||||
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~-~~i~~gl~~LH~~------~ivH~DlKp  141 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMA-AQIASGMAYVERM------NYVHRDLRA  141 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHH-HHHHHHHHHHHHT------TCCCSCCSG
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHH-HHHHHHHHHHhhh------heecccccc
Confidence            3589999775 356666553 44 79999999999 7999999999999      999999997

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.87  E-value=0.0058  Score=49.09  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CeeeEEeecccc-ccHHHHHHHcC------------------------CCCcchhhcccchhHHHHHHHHHHhhhhhhhh
Q psy13596         10 NSYRFIIISKFG-SDLQKLLDEHK------------------------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ   64 (186)
Q Consensus        10 ~~yrfmVmerlG-~dL~~l~~~~~------------------------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~   64 (186)
                      ...-++||+.+. .+|.++.....                        .|+...++.++ .|++..|.+.|+.      +
T Consensus        88 ~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~qi~~gl~ylH~~------~  160 (301)
T d1lufa_          88 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIA-RQVAAGMAYLSER------K  160 (301)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHH-HHHHHHHHHHHHT------T
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHH-HHHHHHhhhcccC------C
Confidence            346789999984 68888775321                        48888999999 7999999999998      9


Q ss_pred             HHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHhhhh
Q psy13596         65 AVTSVIIGLEV-RRKEALSAANDLTQALVDHLNVGVAQAYLNQ  106 (186)
Q Consensus        65 ~~~r~i~~~e~-~rk~a~~s~~~l~~~Lv~~Ln~gvs~~y~Nq  106 (186)
                      .+||||||-=. -..          +..+...|||+++...+.
T Consensus       161 ivHrDlKp~NILld~----------~~~~Kl~DFGls~~~~~~  193 (301)
T d1lufa_         161 FVHRDLATRNCLVGE----------NMVVKIADFGLSRNIYSA  193 (301)
T ss_dssp             CCCSCCSGGGEEECG----------GGCEEECCCSCHHHHTGG
T ss_pred             eEeeEEcccceEECC----------CCcEEEccchhheeccCC
Confidence            99999997100 000          223445688888765443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.78  E-value=0.014  Score=47.13  Aligned_cols=55  Identities=13%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             eeEEeeccccccHHHHHHHcC--CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         12 YRFIIISKFGSDLQKLLDEHK--EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        12 yrfmVmerlG~dL~~l~~~~~--kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      +-+|++...+.+.........  .++...+..+. .|+++.|.+.|+.     .+.+||||||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~qil~al~~lh~~-----~~IvHrDlKp  154 (362)
T d1q8ya_          98 HVVMVFEVLGENLLALIKKYEHRGIPLIYVKQIS-KQLLLGLDYMHRR-----CGIIHTDIKP  154 (362)
T ss_dssp             EEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHH-HHHHHHHHHHHHT-----TCEECSCCSG
T ss_pred             eeeeeecccccccccccccccccCCcHHHHHHHH-HHHHHHHHHHhhh-----cCcccccCCh
Confidence            444555555666666555544  79999999999 7999999999985     5899999997

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.56  E-value=0.0086  Score=44.70  Aligned_cols=68  Identities=7%  Similarity=-0.016  Sum_probs=50.9

Q ss_pred             eEEeeccccccHHHHHHHcCCCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy13596         13 RFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG----LEVRRKEALSAANDLT   88 (186)
Q Consensus        13 rfmVmerlG~dL~~l~~~~~kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~----~e~~rk~a~~s~~~l~   88 (186)
                      .++||++++....      ..++...+..++ .||+..|.+.|+.      +.+|+||||    ....            
T Consensus        85 ~~lvme~~~~~~~------~~l~~~~~~~i~-~ql~~~l~~lH~~------giiHrDiKP~NILv~~~------------  139 (191)
T d1zara2          85 NAVLMELIDAKEL------YRVRVENPDEVL-DMILEEVAKFYHR------GIVHGDLSQYNVLVSEE------------  139 (191)
T ss_dssp             TEEEEECCCCEEG------GGCCCSCHHHHH-HHHHHHHHHHHHT------TEECSCCSTTSEEEETT------------
T ss_pred             CEEEEEeeccccc------cchhhHHHHHHH-HHHHHHHHHHhhC------CEEEccCChhheeeeCC------------
Confidence            4799999985311      158888899999 6999999999999      999999998    2111            


Q ss_pred             HHHHHHhhHhHHHHhhhhh
Q psy13596         89 QALVDHLNVGVAQAYLNQK  107 (186)
Q Consensus        89 ~~Lv~~Ln~gvs~~y~Nqk  107 (186)
                        -+..+|||.+....++.
T Consensus       140 --~~~liDFG~a~~~~~~~  156 (191)
T d1zara2         140 --GIWIIDFPQSVEVGEEG  156 (191)
T ss_dssp             --EEEECCCTTCEETTSTT
T ss_pred             --CEEEEECCCcccCCCCC
Confidence              13468999876555443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.0079  Score=48.60  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CeeeEEeeccc-cccHHHHHHHcC----------CCCcchhhcccchhHHHHHHHHHHhhhhhhhhHHHhhhhh
Q psy13596         10 NSYRFIIISKF-GSDLQKLLDEHK----------EFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIG   72 (186)
Q Consensus        10 ~~yrfmVmerl-G~dL~~l~~~~~----------kf~~ktVl~la~~~ml~~l~~~H~~~~~~~~~~~~r~i~~   72 (186)
                      ....+||||.+ |.||.++...+.          .++...++.++ .++++.|.+.|..      +.+||||||
T Consensus        95 ~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~ia~gl~~LH~~------~ivHrDlk~  161 (308)
T d1p4oa_          95 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA-GEIADGMAYLNAN------KFVHRDLAA  161 (308)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH-HHHHHHHHHHHHT------TCBCSCCSG
T ss_pred             CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHH-HHHHHHHHHHhhC------CeeeceEcC
Confidence            45689999998 478888766331          25667788999 7999999999998      999999997