Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 118
TIGR00930 953
TIGR00930, 2a30, K-Cl cotransporter
2e-33 pfam00324 473
pfam00324, AA_permease, Amino acid permease
7e-07 COG0531 466
COG0531, PotE, Amino acid transporters [Amino acid
0.003
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter
Back Hide alignment and domain information
Score = 122 bits (307), Expect = 2e-33
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG------- 53
+AG+N SGDL D Q++IP GT+ AILTT+ VYL V+LF V DK
Sbjct: 297 LAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCT 356
Query: 54 --------------QSIGGRLVVANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQG 99
+ L V ++ P +I G F +T+ + L SL APRL Q
Sbjct: 357 SAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQAL 416
Query: 100 PKSDII 105
K +I
Sbjct: 417 CKDNIY 422
[Transport and binding proteins, Other]. Length = 953
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease
Back Show alignment and domain information
Score = 45.8 bits (109), Expect = 7e-07
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVY-LSCVLLFAGTVDNLLLRDKFGQSIGGR 59
N +G++ + +++IP + A+ + Y LS + + N S
Sbjct: 212 ELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASP 271
Query: 60 LVVA-----NIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQ 97
V+ +I + + A SL R+L
Sbjct: 272 FVIFFKSLGISGLAP--LINAVILTAALSAANSSLYSGSRVLY 312
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/90 (18%), Positives = 36/90 (40%)
Query: 7 SGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA 66
+ ++ + +R+IP I ++L +Y+ L+ G + L + +
Sbjct: 224 AEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGG 283
Query: 67 WPNEWVILIGSFLSTIGAGLQSLTGAPRLL 96
+I I + LS G+ L + R+L
Sbjct: 284 NWGAIIIAILALLSLFGSLLAWILAVSRVL 313
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
118
KOG1289|consensus 550
99.85 TIGR00906 557
2A0303 cationic amino acid transport permease.
99.83 TIGR03428 475
ureacarb_perm permease, urea carboxylase system. A
99.83 TIGR00930 953
2a30 K-Cl cotransporter.
99.82 TIGR00907 482
2A0304 amino acid permease (GABA permease).
99.82 PRK11357 445
frlA putative fructoselysine transporter; Provisio
99.82 PRK10655 438
potE putrescine transporter; Provisional
99.82 PRK10644 445
arginine:agmatin antiporter; Provisional
99.82 PRK15049 499
L-asparagine permease; Provisional
99.81 PRK10435 435
cadB lysine/cadaverine antiporter; Provisional
99.81 PRK11021 410
putative transporter; Provisional
99.81 PRK11387 471
S-methylmethionine transporter; Provisional
99.8 PRK10836 489
lysine transporter; Provisional
99.8 TIGR01773 452
GABAperm gamma-aminobutyrate permease. GabP is hig
99.8 TIGR00911 501
2A0308 L-type amino acid transporter.
99.79 KOG1286|consensus 554
99.79 TIGR00913 478
2A0310 amino acid permease (yeast).
99.79 TIGR03813 474
put_Glu_GABA_T putative glutamate/gamma-aminobutyr
99.79 PRK10197 446
gamma-aminobutyrate transporter; Provisional
99.79 PRK10238 456
aromatic amino acid transporter; Provisional
99.79 PRK10249 458
phenylalanine transporter; Provisional
99.79 TIGR00908 442
2A0305 ethanolamine permease. The three genes used
99.78 KOG2082|consensus 1075
99.78 TIGR00909 429
2A0306 amino acid transporter.
99.78 TIGR00905 473
2A0302 transporter, basic amino acid/polyamine ant
99.77 PRK10746 461
putative transport protein YifK; Provisional
99.77 KOG1287|consensus 479
99.77 PRK11049 469
D-alanine/D-serine/glycine permease; Provisional
99.77 PRK10580 457
proY putative proline-specific permease; Provision
99.76 TIGR03810 468
arg_ornith_anti arginine/ornithine antiporter. Mem
99.76 TIGR00910 507
2A0307_GadC glutamate:gamma-aminobutyrate antiport
99.75 COG0531 466
PotE Amino acid transporters [Amino acid transport
99.75 PF00324 478
AA_permease: Amino acid permease; InterPro: IPR004
99.73 COG0833 541
LysP Amino acid transporters [Amino acid transport
99.71 PF13520 426
AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G
99.71 KOG1288|consensus 945
99.65 PRK15238 496
inner membrane transporter YjeM; Provisional
99.62 COG1113 462
AnsP Gamma-aminobutyrate permease and related perm
99.49 KOG2083|consensus 643
98.58 TIGR00837 381
araaP aromatic amino acid transport protein. aroma
98.31 TIGR00796 378
livcs branched-chain amino acid uptake carrier. tr
97.49 TIGR00912 359
2A0309 spore germination protein (amino acid perme
96.87 PHA02764 399
hypothetical protein; Provisional
94.38 PF03222 394
Trp_Tyr_perm: Tryptophan/tyrosine permease family;
93.95 TIGR00814 397
stp serine transporter. The HAAAP family includes
92.51 PRK10483 414
tryptophan permease; Provisional
90.24 PRK15132 403
tyrosine transporter TyrP; Provisional
89.5 PRK13629 443
threonine/serine transporter TdcC; Provisional
89.09 COG0814 415
SdaC Amino acid permeases [Amino acid transport an
86.38 COG3949 349
Uncharacterized membrane protein [Function unknown
80.12
>KOG1289|consensus
Back Hide alignment and domain information
Probab=99.85 E-value=1.9e-21 Score=149.18 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=92.7
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcCh--H-HHhhhhcccchhhHHHhhcchhhHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDN--L-LLRDKFGQSIGGRLVVANIAWPNEWVILIGSF 78 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
+.+|++||+|||+|+.||||+.++.++.++.+++++.+.+++++ + .++++.++|+.+.+... .+.-+...+....+
T Consensus 270 a~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~-lg~k~~v~~~~l~i 348 (550)
T KOG1289|consen 270 AAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQA-LGKKGAVFLLSLII 348 (550)
T ss_pred chHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHh-cCCCceEehhHHHH
Confidence 57899999999999999999999999999999999999999973 2 33445567765433211 11112234555567
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
++.+.++.+++.+.||+.|+.||||.||++++++|+||+
T Consensus 349 i~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~ 387 (550)
T KOG1289|consen 349 IALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQ 387 (550)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCC
Confidence 778888999999999999999999999999999999998
>TIGR00906 2A0303 cationic amino acid transport permease
Back Show alignment and domain information
Probab=99.83 E-value=1.2e-20 Score=147.64 Aligned_cols=109 Identities=15% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.+++++|+++++++.+++|+++++.+. +.. .++...++ ....++.++++++.
T Consensus 250 v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~--p~~--~a~~~~g~~~~~~ii~~~~~~~~ 325 (557)
T TIGR00906 250 IATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA--PFP--VAFEYVGWGPAKYIVAVGALCGM 325 (557)
T ss_pred HHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCc--HHH--HHHHHcCchHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999988765322 221 12222221 23456778888889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|+|
T Consensus 326 ~~sl~~~~~~~sRil~amarDGlLP~--~fakv~~r 359 (557)
T TIGR00906 326 STSLLGGMFPLPRVIYAMARDGLLFK--WLAQINSK 359 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccH--HHhccCCC
Confidence 99999999999999999999999995 59999976
>TIGR03428 ureacarb_perm permease, urea carboxylase system
Back Show alignment and domain information
Probab=99.83 E-value=3e-20 Score=142.80 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=83.9
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcCh-HH-HhhhhcccchhhHHHhhcchhhHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDN-LL-LRDKFGQSIGGRLVVANIAWPNEWVILIGSFL 79 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (118)
+.+|++||+|||+|++|||++.++.+++++|+++.+....+.+. +. ..++.+.+.......+. ..+ ..+...+++
T Consensus 231 ~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~--~~~-~~~~~~~~i 307 (475)
T TIGR03428 231 SAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDS--PWG-TVLLVDVAI 307 (475)
T ss_pred hHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCc--HhH-HHHHHHHHH
Confidence 45789999999999999999999999999999998888877654 21 11122222111111111 112 234455567
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+.+++.++.+.+.+|++|+|||||.+|++++|+|+|+|
T Consensus 308 ~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r 345 (475)
T TIGR03428 308 AILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCC
Confidence 88899999999999999999999999998899999976
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
>TIGR00930 2a30 K-Cl cotransporter
Back Show alignment and domain information
Probab=99.82 E-value=1.7e-20 Score=153.64 Aligned_cols=116 Identities=39% Similarity=0.449 Sum_probs=90.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccch---------------------hhH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIG---------------------GRL 60 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~ 60 (118)
++++++||+|||+|++|||++.++.+++++|+++++++..+.+.+.+......... ..+
T Consensus 298 agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~ 377 (953)
T TIGR00930 298 AGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNL 377 (953)
T ss_pred HHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchH
Confidence 56889999999999999999999999999999999988888776543221100000 111
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 61 VVANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
......+...+++.++++++++++.++++++.+|++|+|||||.+|+.++|+|+|+|
T Consensus 378 ~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k 434 (953)
T TIGR00930 378 QVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGK 434 (953)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCC
Confidence 111122223467888999999999999999999999999999999988899999976
>TIGR00907 2A0304 amino acid permease (GABA permease)
Back Show alignment and domain information
Probab=99.82 E-value=5.3e-20 Score=141.48 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=84.0
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHhh-hhcccchhhH--HHhhcchhhHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVD-NLLLRD-KFGQSIGGRL--VVANIAWPNEWVILIGS 77 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~-~~~l~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (118)
..++++||+|||+|++|||++.++.+..++|+++.+......+ .+.+.+ +.+.|..... ..+. .+ +..++...+
T Consensus 235 ~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~-~~-~~~~~~~~~ 312 (482)
T TIGR00907 235 GTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGN-KA-GAIFLLCLI 312 (482)
T ss_pred hhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCC-ch-HHHHHHHHH
Confidence 4578999999999999999999999888877776666555553 343432 2223332211 1111 12 233556666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 78 FLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 78 ~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.+++.++.+++.||++|+|||||.+|++++|+|+|+|
T Consensus 313 ~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~ 352 (482)
T TIGR00907 313 LVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPR 352 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCC
Confidence 7888899999999999999999999999988889999987
>PRK11357 frlA putative fructoselysine transporter; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=2.4e-20 Score=142.20 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=86.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH-HHhhcchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL-VVANIAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.+++++|++.+++.....+.+++.++.. +..... .....+.....++.+..+++.
T Consensus 214 ~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~-p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 292 (445)
T PRK11357 214 ICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSET-PISDALTWIPALGSTAGIFVAITAMIVI 292 (445)
T ss_pred HHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCc-hHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999888888887765332 221111 111111112345666677788
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+.+.+|++|+|+|||.+|+ +|+|+|+|
T Consensus 293 ~~~~~~~~~~~sR~~~a~ardg~lp~--~~~~v~~~ 326 (445)
T PRK11357 293 LGSLSSCVMYQPRLEYAMAKDNLFFK--CFGHVHPK 326 (445)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCCchH--HHHHhCCC
Confidence 89999999999999999999999995 59999976
>PRK10655 potE putrescine transporter; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=5.5e-20 Score=139.90 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLS 80 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (118)
+.++++||+|||+||+|||++.++.++.++|++.+.+..+..|++++.++.. +... ...+. +.....++.++.+++
T Consensus 207 ~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~-p~~~--~~~~~~g~~~~~~~~~~~~is 283 (438)
T PRK10655 207 SACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTA-PFGL--AFAQMFNPTVGKIVMALMVMS 283 (438)
T ss_pred hhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccc-hHHH--HHHHHcChhHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998888888877754322 2211 11111 111234566677788
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+++.+|++|+|+|||.+|+ +|+|+|++|
T Consensus 284 ~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~v~~~~ 319 (438)
T PRK10655 284 CCGSLLGWQFTIAQVFKSSADEGYFPK--IFSRVTKVD 319 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhH--HHHhhCcCC
Confidence 999999999999999999999999995 599999764
>PRK10644 arginine:agmatin antiporter; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=4.7e-20 Score=140.66 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.+|++||+|||+|++|||++.++.+++++|++.++++.++++++++..+. .|... +..+ .+..+..++.++.+++.
T Consensus 210 ~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~-~p~~~--~~~~~~g~~~~~~v~~~~~~s~ 286 (445)
T PRK10644 210 ASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSA-SPFGD--AARMALGDTAGAIVSFCAAAGC 286 (445)
T ss_pred HHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCC-ChHHH--HHHHHhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988775432 23211 1111 11112345666777888
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+...+|+.|+|+|||.+|+ +|+|+|++|
T Consensus 287 ~~~~~~~~~~~sr~~~a~ardg~lP~--~~~~v~~~~ 321 (445)
T PRK10644 287 LGSLGGWTLLAGQTAKAAADDGLFPP--IFARVNKAG 321 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCcCC
Confidence 88888899999999999999999994 599999764
>PRK15049 L-asparagine permease; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=4.5e-20 Score=142.84 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=88.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++....++|++..++....+|++++... +.|... .+...+. ....++.+.++++.
T Consensus 239 i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~-~sP~~~--~~~~~g~~~~~~ii~~~ilia~ 315 (499)
T PRK15049 239 VGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAG-QSPFVT--FFSKLGVPYIGSIMNIVVLTAA 315 (499)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcC-CCHHHH--HHHHcCchhHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999988766432 223211 1222221 12346777788999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 316 ~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~ 350 (499)
T PRK15049 316 LSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMSRQH 350 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhCCCC
Confidence 9999999999999999999999999 5599999765
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=1.1e-19 Score=138.48 Aligned_cols=112 Identities=7% Similarity=0.062 Sum_probs=88.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+||+|||++.++.++.++|++.+++....+|++++.... .|...........| +..++.++++++.+
T Consensus 206 ~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~-~p~~~~~~~~~g~~-~~~~i~~~~~i~~l 283 (435)
T PRK10435 206 AAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASG-APFAISASTILGNW-AAPLVSAFTAFACL 283 (435)
T ss_pred HHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCC-CcHHHHHHHHhchh-HHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998875432 23221111001112 33456666778889
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.++..+|..++|||||.+|+. |+|+||+|
T Consensus 284 ~~~~~~~~~~~r~~~~~ardG~lP~~--f~k~nk~g 317 (435)
T PRK10435 284 TSLGSWMMLVGQAGVRAANDGNFPKV--YGEVDKNG 317 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHH--HHhhCcCC
Confidence 99999999999999999999999965 99999875
>PRK11021 putative transporter; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=1e-19 Score=137.45 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLS 80 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (118)
..++++||+|||+||+|||++.++.++.++|++.+++.....++++... .+.+.. ....+. +..+.+++.+..+++
T Consensus 195 ~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~G~~~~~ii~i~~~~s 271 (410)
T PRK11021 195 AFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQA-AAASLP--GIFVQLFGGYALWVICVIGYLA 271 (410)
T ss_pred HHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh-ccccHH--HHHHHHhCchhHHHHHHHHHHH
Confidence 3568999999999999999999999999999999988766655433321 112211 111111 111234566666788
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+.+.+|++|+|+|||.+|+ +|+|+|++|
T Consensus 272 ~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~k~~~~~ 307 (410)
T PRK11021 272 CFASVNIYTQSFARLVWSQAREGRPPS--YLARLSARG 307 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccH--HHHhhccCC
Confidence 899999999999999999999999994 599999764
>PRK11387 S-methylmethionine transporter; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=3.8e-20 Score=142.13 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.++.++|++.++++..+.|.+++..+. .|.. .+....+ ..+..++.++++++.
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~-~p~~--~~~~~~g~~~~~~ii~~~~~~s~ 301 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEK-SPFV--LVFEKVGIPYAADIFNFVILTAI 301 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccC-ChHH--HHHHHcCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998888876554222 2221 1122222 123346777788899
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++++++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 302 ~~~~~~~~~~~sR~l~a~ardg~lP~--~f~~~~~~~ 336 (471)
T PRK11387 302 LSAANSGLYASGRMLWSLSNEGTLPA--CFARLTKRG 336 (471)
T ss_pred HHHHHHHHHHhhHHHHHHHhcCCcCH--HHHHhCCCC
Confidence 99999999999999999999999994 599999764
>PRK10836 lysine transporter; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=1.2e-19 Score=140.08 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=86.3
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHh---hhh----cccchhhHHHhhcch-hhHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLR---DKF----GQSIGGRLVVANIAW-PNEWVIL 74 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~---~~~----~~~~~~~~~~~~~~~-~~~~~~~ 74 (118)
.++++||+|||+||+|||++.++.++.++|++..+++...+|.++.. ++. ..|. ...++..+. ....++.
T Consensus 224 ~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~--~~~~~~~g~~~~~~ii~ 301 (489)
T PRK10836 224 IGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPF--TLVFQHAGLLSAAAVMN 301 (489)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcH--HHHHHHcCChhHHHHHH
Confidence 46789999999999999999999999999999999988888764322 111 1111 112222221 2234667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 75 IGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+.++++.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 302 ~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~--~~~kv~~~~ 343 (489)
T PRK10836 302 AVILTAVLSAGNSGMYASTRMLYTLACDGKAPR--IFAKLSRGG 343 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhCCCC
Confidence 777889999999999999999999999999994 599999765
>TIGR01773 GABAperm gamma-aminobutyrate permease
Back Show alignment and domain information
Probab=99.80 E-value=1.1e-19 Score=138.68 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=84.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.+|++||+|||+|++|||+..++....++|++..+.....+|++.....+..+... .....+ ..+..++.+.++++.
T Consensus 220 ~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~--~~~~~g~~~~~~ii~~~~~~~~ 297 (452)
T TIGR01773 220 VTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVA--VLELLGIPHAKLIMDFVVLTAV 297 (452)
T ss_pred HhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHH--HHHHcCChhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999888777776654332211112211 112221 123456667778889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 298 ~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~~~~ 332 (452)
T TIGR01773 298 LSCLNSALYTTSRMLYSLAERGDAP--RVFMKLNKKG 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCC
Confidence 9999999999999999999999999 5599999764
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
>TIGR00911 2A0308 L-type amino acid transporter
Back Show alignment and domain information
Probab=99.79 E-value=2.4e-19 Score=138.58 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+|++|||++.++.+++++|++.++++...++.+++..+... .........++ ..+++.+.+.++.+
T Consensus 254 ~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~--~~~~~~~~~g~-~~~~i~~~~~is~~ 330 (501)
T TIGR00911 254 LNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAV--AVDFGERLLGV-MSWAMPALVGLSCF 330 (501)
T ss_pred HhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHH--HHHHHHHHhhh-HHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999988888777543211 11111111112 23456667778899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
++.++.+++.+|++|+|||||.+|+. |+|+|+|
T Consensus 331 ~~~~~~~~~~sR~l~a~ardg~lP~~--~~~v~~~ 363 (501)
T TIGR00911 331 GSVNGSLFSSSRLFFVGGREGHLPSL--LSMIHVK 363 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccHH--HHHhcCC
Confidence 99999999999999999999999975 9999976
>KOG1286|consensus
Back Show alignment and domain information
Probab=99.79 E-value=1.2e-19 Score=141.61 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=91.5
Q ss_pred CCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHH--HhhhhcccchhhHHHh-hcchh--hHHHHHHHHH
Q psy13614 4 SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLL--LRDKFGQSIGGRLVVA-NIAWP--NEWVILIGSF 78 (118)
Q Consensus 4 ~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~ 78 (118)
+..+||+|||+|++|+|+..++.++.++|++..+.++.++|+++ |..+. +...++..+ +..+. ...++.++++
T Consensus 252 a~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~--~~~spF~iai~~~~~k~~~~ivna~iL 329 (554)
T KOG1286|consen 252 ATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA--ALASPFVIAIGNAGAKYLPHIVNAGIL 329 (554)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC--ccccHHHHHHhccCccccchhhhHHHH
Confidence 45689999999999999999999999999999999999999976 55433 333444322 11121 1238899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++..+++|++++..||.+|+||+||++|++ |+++|++|
T Consensus 330 ~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~--f~~v~~~g 367 (554)
T KOG1286|consen 330 IGLLSSLNSSLYAGSRVLYALAKDGLAPKF--FARVDRRG 367 (554)
T ss_pred HHHHHHHHHHhHHhHHHHHHHHhcCCcchH--HhhcCCCC
Confidence 999999999999999999999999999987 99999985
>TIGR00913 2A0310 amino acid permease (yeast)
Back Show alignment and domain information
Probab=99.79 E-value=1.3e-19 Score=139.21 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHH--Hhhhh------cccchhhHHHhhcc-hhhHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLL--LRDKF------GQSIGGRLVVANIA-WPNEWVI 73 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~--l~~~~------~~~~~~~~~~~~~~-~~~~~~~ 73 (118)
.++++||+|||+||+|||++.++.++.++|++..+++..++|+++ +.++. +.|.. ......+ .....++
T Consensus 216 ~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~ 293 (478)
T TIGR00913 216 VALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFV--IAIQNHGIKVLPHIF 293 (478)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHH--HHHHHcCCchHhHHH
Confidence 468899999999999999999999999999999888888877543 32211 12221 1112111 1233467
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 74 LIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+.++++.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 294 ~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~--~f~k~~~~~ 336 (478)
T TIGR00913 294 NAVILISVLSAANSSLYASSRTLYALAHQGLAPK--IFAYVDRRG 336 (478)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccH--HHHhhCCCC
Confidence 7777889999999999999999999999999994 599999765
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter
Back Show alignment and domain information
Probab=99.79 E-value=3.9e-19 Score=136.61 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc--chhhHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI--AWPNEWVILIGSFLS 80 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (118)
.+..+||+|||+|++|||++.++.++.++|++.++++.+++|++++..++..........+.. .+. ..++.+...++
T Consensus 213 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~i~~~~~~~~ 291 (474)
T TIGR03813 213 NAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWL-GPILAFALAIG 291 (474)
T ss_pred hHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHH-HHHHHHHHHHH
Confidence 456789999999999999999999999999999999999998876543221100001111111 122 23455556677
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+.+.+|++|+++|||.+| ++|+|+|++|
T Consensus 292 ~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~k~~ 327 (474)
T TIGR03813 292 VLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTNKNG 327 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccCCCC
Confidence 88888888999999999999999999 4599999765
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
>PRK10197 gamma-aminobutyrate transporter; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=2.1e-19 Score=137.32 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=86.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++.+||+|||+||+|||++.++....++|++..++....+|+++.+.+...+.. ......+ ..+..++.+.++++.
T Consensus 200 ~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~g~~~~~~ii~~~i~~~~ 277 (446)
T PRK10197 200 VTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYR--SVLELLNIPHAKLIMDCVILLSV 277 (446)
T ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHH--HHHHHcCchHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998888887643221111111 1112211 123456677778889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 278 ~~~~n~~~~~~sR~l~a~ardg~lP~--~~~~~~~~~ 312 (446)
T PRK10197 278 TSCLNSALYTASRMLYSLSRRGDAPA--VMGKINRSK 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhCcCC
Confidence 99999999999999999999999995 599999765
>PRK10238 aromatic amino acid transporter; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=2.1e-19 Score=137.63 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++....++|+..........|++++..+ +.|... ...+.+ .....++...++++.
T Consensus 219 ~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~-~sP~~~--~~~~~g~~~~~~i~~~~i~~~~ 295 (456)
T PRK10238 219 VGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTAD-TSPFVL--IFHELGDTFVANALNIVVLTAA 295 (456)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCC-CCcHHH--HHHHcCChHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988887777787766432 233321 122221 122345666777888
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.||++|+|||||.+| ++|+|+|++|
T Consensus 296 ~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~~~~ 330 (456)
T PRK10238 296 LSVYNSCVYCNSRMLFGLAQQGNAP--KALASVDKRG 330 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCC
Confidence 9999999999999999999999999 5599999875
>PRK10249 phenylalanine transporter; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=1.6e-19 Score=138.34 Aligned_cols=112 Identities=7% Similarity=0.035 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.+|++||+|||+|++|||++.++....++|++..++...++|++++..+. .|...........+ ...++.+.++++.+
T Consensus 228 ~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~-~~~~~~~~~~~a~~ 305 (458)
T PRK10249 228 IGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNS-SPFVMIFHNLDSNV-VASALNFVILVASL 305 (458)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccC-CcHHHHHHHcCchh-HHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999888888776554322 23211111111112 23455666778899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 306 ~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~ 339 (458)
T PRK10249 306 SVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVSRRG 339 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhCCCC
Confidence 999999999999999999999999 4599999765
>TIGR00908 2A0305 ethanolamine permease
Back Show alignment and domain information
Probab=99.78 E-value=4.9e-19 Score=134.83 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchh--hHHHhhcchhhHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGG--RLVVANIAWPNEWVILIGSFLS 80 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
.++++||+|||+||+|||++.++.++.++|+.+..+..+..+.+++.+.. .+... ....+...+. ..++.+..+++
T Consensus 210 ~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~p~~~~~~~~~g~~~~~-~~~i~~~~~~~ 287 (442)
T TIGR00908 210 VAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSN-NPLPEALESIYGGSTWM-SQFVNLVGLFG 287 (442)
T ss_pred HHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCc-chHHHHHHHHhCCchHH-HHHHHHHHHHH
Confidence 46889999999999999999999999999999888777677777664322 22211 1111221222 23455555677
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 288 ~~~s~~~~~~~~sR~l~a~ardg~lP~--~~~~~~~~~ 323 (442)
T TIGR00908 288 LIASFHGIIYGYSRQIFALSRAGYLPE--SLSKVNRKK 323 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccH--HHHHhCCCC
Confidence 888999999999999999999999994 599999654
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
>KOG2082|consensus
Back Show alignment and domain information
Probab=99.78 E-value=1.1e-19 Score=143.18 Aligned_cols=118 Identities=68% Similarity=1.015 Sum_probs=108.7
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLS 80 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
++|+|+++++|||+|+||.+++.++++...+|+...+.+++++....|++..|.......+.+...|+..|++.+|.+++
T Consensus 427 maGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlS 506 (1075)
T KOG2082|consen 427 MAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLS 506 (1075)
T ss_pred eecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHH
Confidence 58999999999999999999999999999999999999999998888888777666555667788898889999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++++++.++.+++|+++|+|||+.+|+.+.|+|.+++|
T Consensus 507 T~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ng 544 (1075)
T KOG2082|consen 507 TCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANG 544 (1075)
T ss_pred HhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCC
Confidence 99999999999999999999999999999999998875
>TIGR00909 2A0306 amino acid transporter
Back Show alignment and domain information
Probab=99.78 E-value=9.3e-19 Score=132.61 Aligned_cols=110 Identities=16% Similarity=0.264 Sum_probs=88.3
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.++......|.+++.+++. +.. .+..+. +.....++.++.+++.
T Consensus 214 ~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~~~~~~ 290 (429)
T TIGR00909 214 ISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTA-PLS--LVGYDLGQGIGGLILTAGAVFSI 290 (429)
T ss_pred HHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCc-HHH--HHHHHhCchHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998888888877754332 221 111111 1123456778888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+.+.+|++|+++|||.+|+ +|+|+|+|
T Consensus 291 ~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~~~~~ 324 (429)
T TIGR00909 291 ASVMLAGIYGTSRVLFAMSRDGLLPG--SLSKVHPK 324 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHcCCC
Confidence 99999999999999999999999996 59999976
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family
Back Show alignment and domain information
Probab=99.77 E-value=1.2e-18 Score=133.98 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|| +|++||+++.++.+++++|++.+.+.....+.+++.+...+.... ......+..+..++.++.+++.+
T Consensus 218 ~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~-~~~~~~g~~~~~~i~i~~~is~~ 295 (473)
T TIGR00905 218 AVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAA-VLEMIVGKWGAVLISLGLIISVL 295 (473)
T ss_pred HHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHH-HHHHHhChHHHHHHHHHHHHHHH
Confidence 4578999999 999999999999999999999999988888888876543221211 11111111233467777889999
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+.+.+|++|+|||||.+|+ +|+|+|++|
T Consensus 296 ~~~~~~~~~~sR~~~amardg~lP~--~~~~v~~~~ 329 (473)
T TIGR00905 296 GSLLSWTMLAAEVPFSAAKDGLFPK--IFGRVNKNG 329 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhH--HHHhhCccC
Confidence 9999999999999999999999994 599999874
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
>PRK10746 putative transport protein YifK; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=3.6e-19 Score=136.64 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=87.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++.+||+|||+|++|||+..++....++|++..+++..++|++++..+ +.|... .+...+. ....++...++++.
T Consensus 219 v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~-~sp~v~--~~~~~g~~~~~~i~~~~il~a~ 295 (461)
T PRK10746 219 IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSN-GSPFVL--TFAKIGITAAAGIINFVVLTAA 295 (461)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCC-CCcHHH--HHHHhCchhHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998888888766532 223221 1222221 12345666777889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.||++|+|||||.+|++ |+|+|++|
T Consensus 296 ~s~~n~~~~~~sR~l~~~a~~g~lP~~--~~~~~~~g 330 (461)
T PRK10746 296 LSGCNSGMYSCGRMLYALAKNRQLPAA--MAKVSRHG 330 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCHH--HHHhCCCC
Confidence 999999999999999999999999976 99999875
>KOG1287|consensus
Back Show alignment and domain information
Probab=99.77 E-value=8e-19 Score=133.94 Aligned_cols=108 Identities=12% Similarity=0.156 Sum_probs=88.7
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
..+||+|||+||+|||+.+++.++++.|++++++....+++|++..+++. +..+.-...+.. .+.+.+.+.++.+++
T Consensus 225 ~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aV--av~Fa~~~~G~~-~~~ip~~ValS~~G~ 301 (479)
T KOG1287|consen 225 YVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAV--AVTFADRILGVF-AWAIPFSVALSLIGS 301 (479)
T ss_pred cchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchH--HHHHHHHhccch-HHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999999999999998888655432 222221122222 367888888999999
Q ss_pred HHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 85 GLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
.++.+++.||.+|++||+|+||.. |++.|++
T Consensus 302 ~n~~ifs~SR~~~~~areG~LP~~--~s~i~~~ 332 (479)
T KOG1287|consen 302 LNSVIFSSSRLFYAGAREGHLPAF--FSMISVR 332 (479)
T ss_pred hhhHHHHHHHHHHHHHHccCccHH--HHhhcCC
Confidence 999999999999999999999976 7777765
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=5.2e-19 Score=135.84 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+||+||+++.+++...++|++.........|++++.... .|...........+ ...++.+.++++.+
T Consensus 230 ~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~-~~~~~~~~~~~s~~ 307 (469)
T PRK11049 230 VGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDK-SPFVELFVLVGLPA-AASVINFVVLTSAA 307 (469)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccC-CcHHHHHHHcCChh-HHHHHHHHHHHHHH
Confidence 45789999999999999999888889999999999887777777664332 23211111111112 23466667788899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 308 ~~~~~~~~~~sR~l~a~ardg~lP~--~~~kv~~~~ 341 (469)
T PRK11049 308 SSANSGVFSTSRMLFGLAQEGVAPK--AFAKLSKRA 341 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCH--HHHhhCCCC
Confidence 9999999999999999999999994 599999875
>PRK10580 proY putative proline-specific permease; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=8.8e-19 Score=134.12 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=85.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++.++.++|+...+......|.+++.. .+.|.. ......+. ....++.+..+++.
T Consensus 218 ~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~-~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~ 294 (457)
T PRK10580 218 IGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGT-NGSPFV--LTFQHMGITFAASILNFVVLTAS 294 (457)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCc-cCChHH--HHHHHcCChhHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988887777766543 222321 11111221 22345566667788
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 295 ~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~~~~ 329 (457)
T PRK10580 295 LSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTSRRG 329 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCC
Confidence 8999999999999999999999999 4599999865
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter
Back Show alignment and domain information
Probab=99.76 E-value=2.9e-18 Score=131.64 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=88.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.++++||.|| +||+||+++.++.+..++|++.+++..+.++++++.+...++.. .+... .+..+..++.++++++.
T Consensus 214 ~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~--~~~~~~~g~~~~~~i~~~~~is~ 290 (468)
T TIGR03810 214 ASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA--YVLEHMVGTWGAVLINIGLIISI 290 (468)
T ss_pred HhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH--HHHHHHcchHHHHHHHHHHHHHH
Confidence 4678999998 79999999999999999999999999988888877643222111 11111 11123457788889999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 291 ~~~~~~~~~~~sR~~~a~ardg~lP~--~f~k~~~~~ 325 (468)
T TIGR03810 291 LGAWLSWTLLPAEIPLLMAKDKLMPK--YFGKENANG 325 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCCCC
Confidence 99999999999999999999999995 499999875
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter
Back Show alignment and domain information
Probab=99.75 E-value=2.5e-18 Score=133.40 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=83.5
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh----cchhhHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN----IAWPNEWVILIGSF 78 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 78 (118)
.++++||+|||+|++|||++.+++++.++|.+.++.+...+|++++....+........... ..|. ..++.+..+
T Consensus 213 ~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~ 291 (507)
T TIGR00910 213 SASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWL-VKVIAALIA 291 (507)
T ss_pred HHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHH-HHHHHHHHH
Confidence 46789999999999999999999999999999888877777876654322211000111111 1122 224555667
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.+++.++++++.+|++|++||||.+| ++|+|+|++|
T Consensus 292 ~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~nk~~ 329 (507)
T TIGR00910 292 FGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMNKHE 329 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhCcCC
Confidence 7788888999999999999999999999 4599999765
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.75 E-value=5.3e-18 Score=128.87 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc-ccchhhHHHhhcchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG-QSIGGRLVVANIAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....+.+++..... .|....... ..+..+..++.+..+++.
T Consensus 220 ~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~g~~~~~~i~~~~~~~~ 298 (466)
T COG0531 220 IATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALF-GGGNWGAIIIAILALLSL 298 (466)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHH-cCccHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998864543211 121111111 111123456777888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++...+.+|.+|+|+|||.+|+ +++|+|+++
T Consensus 299 ~~~~~~~~~~~sR~~~~~ardg~lP~--~~~~~~~~~ 333 (466)
T COG0531 299 FGSLLAWILAVSRVLYAMARDGLLPK--FFAKVNPKG 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHHhCCCC
Confidence 99999999999999999999999998 599999874
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell
Back Show alignment and domain information
Probab=99.73 E-value=5.3e-19 Score=135.86 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=86.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH--HHhhcc-hhhHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL--VVANIA-WPNEWVILIGSF 78 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 78 (118)
+.+.++||+|||+|++|||+..++++.+++|++..++.....+++.+..........++ ...... .....++.++.+
T Consensus 218 ~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l 297 (478)
T PF00324_consen 218 SIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGIL 297 (478)
T ss_pred ccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccch
Confidence 56789999999999999999999999999999999999999988765432211100111 111111 123456778889
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.+++.++.+++.||++|+|+|||.+|. +++++.+++|
T Consensus 298 ~s~~s~~~~~~~~~sR~l~ama~dg~lP~-~~~~~~~k~~ 336 (478)
T PF00324_consen 298 ISAFSSANASLYAASRLLYAMARDGLLPK-KFFARHPKNG 336 (478)
T ss_pred hhhhhhhhhhhcccceeehhhhhhhhhhh-hhhhhhhcCC
Confidence 99999999999999999999999999993 2355545444
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.71 E-value=1.9e-17 Score=127.35 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=89.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChH--HHhhhh-cccchhhHH--Hhhcch-hhHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNL--LLRDKF-GQSIGGRLV--VANIAW-PNEWVILIGSFL 79 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~--~l~~~~-~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 79 (118)
.|+|.+||+|++|||+-..+..+.++|++..++++.++|++ .|..+. ......+++ +...++ ..+.++...+++
T Consensus 256 aAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~ 335 (541)
T COG0833 256 AAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT 335 (541)
T ss_pred eecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence 48999999999999999999999999999999999999874 232221 111223332 333332 234678888999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+.++++|+.++++||++|+||+||..|+. |+|+|++|
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~APk~--f~~~~r~G 372 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGKAPKI--FAKVDRRG 372 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCCCchH--HHhhCCCC
Confidence 99999999999999999999999999977 99999987
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A
Back Show alignment and domain information
Probab=99.71 E-value=5.6e-17 Score=122.56 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||.|| |++||+++.++.++.++|++.++......|++++...+..+........... .....++.+..+++.
T Consensus 207 ~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 284 (426)
T PF13520_consen 207 IASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSL 284 (426)
T ss_dssp HHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred cccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccccccccccccc
Confidence 4678999777 8999999999999999999999999999998776543221100111111111 123456778888899
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+.+.+|++|+|+|||.+| ++|+|+|++|
T Consensus 285 ~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~k~~ 319 (426)
T PF13520_consen 285 FGSINAFIFGASRLLYAMARDGVLP--KWFAKVNKFG 319 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTSSSS
T ss_pred ccccchhhcchhhcccccccccchh--hhhhhccccC
Confidence 9999999999999999999999999 5699999654
>KOG1288|consensus
Back Show alignment and domain information
Probab=99.65 E-value=4.7e-16 Score=122.11 Aligned_cols=107 Identities=35% Similarity=0.482 Sum_probs=92.5
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFL 79 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (118)
+||++|++|+|+|.|+|||+++.++...+++|+++.+.+....++..|.+++.. +...+ | .+++.+|++-
T Consensus 311 mAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v-------~~~isl~--p~fi~iGi~s 381 (945)
T KOG1288|consen 311 MAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV-------MMHISLH--PPFILIGILS 381 (945)
T ss_pred hcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh-------eeecccc--chHHHHHHHH
Confidence 589999999999999999999999999999999999998888898888766532 22222 3 3578899999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~ 116 (118)
+.+++.++.+++++|++.++|||+.+|..-.++|..+
T Consensus 382 ttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s 418 (945)
T KOG1288|consen 382 TTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSS 418 (945)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccc
Confidence 9999999999999999999999999998877887644
>PRK15238 inner membrane transporter YjeM; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=1.5e-15 Score=117.54 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccc-hhhH----HHhh-------------
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSI-GGRL----VVAN------------- 64 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~-~~~~----~~~~------------- 64 (118)
.++++||+|||+|++|||++.++.++.++|++..+.+....|+++.......+. ...+ ..+.
T Consensus 230 ~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 309 (496)
T PRK15238 230 VGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAAS 309 (496)
T ss_pred HHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhh
Confidence 468899999999999999999999999999999887777777665432211111 1011 0110
Q ss_pred c--chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 65 I--AWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 65 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
. +.....++.+..+++.+++.++.+++.+|.+++++|||.+|+. |+|+|++|
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~--f~k~nk~g 363 (496)
T PRK15238 310 LTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKK--MTKLNKNG 363 (496)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHH--HHhhCcCC
Confidence 0 0001113455667888899999999999999999999999965 99999775
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.49 E-value=2.7e-15 Score=113.68 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=87.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLSTIGA 84 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (118)
.+.|.|||+|.+|||+-.-.....++|+.-.+++....|++++.++. .|+.. .+...+- ..+.++...++.+.+++
T Consensus 225 tA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~--~f~~iGi~~Aa~i~N~VVLtAa~S~ 301 (462)
T COG1113 225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVT--VFSLIGIPFAAGIMNFVVLTAALSA 301 (462)
T ss_pred HHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHH--HHHHcCCcccccceeEEEeechhhc
Confidence 47899999999999999999999999999999999999998876533 33321 2222221 12335666667889999
Q ss_pred HHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 85 GLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.|+.+++.+|++|.+|+||..|+. ++|+|++|
T Consensus 302 ~NSglystsRmL~~la~~g~APk~--~~klsk~g 333 (462)
T COG1113 302 LNSGLYSTSRMLYSLAKQGDAPKA--FAKLSKRG 333 (462)
T ss_pred ccccccccchHHHHHhhcCcccHh--HhhccccC
Confidence 999999999999999999999977 99999986
>KOG2083|consensus
Back Show alignment and domain information
Probab=98.58 E-value=9.4e-08 Score=74.95 Aligned_cols=115 Identities=26% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc--c-----cchhh-HHHhhcchhhHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG--Q-----SIGGR-LVVANIAWPNEWV 72 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~--~-----~~~~~-~~~~~~~~~~~~~ 72 (118)
+||++++++.|+|++++|++.++++.+...+|+....-.+.+..++.+..... . -.... .........+ -.
T Consensus 240 laG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~-Pl 318 (643)
T KOG2083|consen 240 LAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFG-PL 318 (643)
T ss_pred hccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcc-cc
Confidence 58999999999999999999999999999999998888777765554332110 0 01111 1222121111 25
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCC
Q psy13614 73 ILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116 (118)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~ 116 (118)
...|.+.+..++..+++.+++++++++.+|...|...++.|-..
T Consensus 319 ~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyG 362 (643)
T KOG2083|consen 319 ITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYG 362 (643)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCC
Confidence 66777888888899999999999999999999998877775443
>TIGR00837 araaP aromatic amino acid transport protein
Back Show alignment and domain information
Probab=98.31 E-value=3.4e-06 Score=63.33 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=68.3
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc--ccchh-hHHHhh--cchhhHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG--QSIGG-RLVVAN--IAWPNEWVILIGSFL 79 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~--~~~~~~~~~~~~~~~ 79 (118)
.+.+|.+|++|++||+++.+..+..++|++...+..+.++++++.+... ..... ...... ..+....++..+.++
T Consensus 199 ~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 278 (381)
T TIGR00837 199 SLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNF 278 (381)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3467888779999999999999999999999999999999988764221 11111 011111 112234567777788
Q ss_pred HHHHHHHHHhhhHHHHHHH-hhcCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQ-GPKSD 103 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a-~ardg 103 (118)
+..++.++...+.++-+.. +.+|+
T Consensus 279 al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 279 ALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888888888888777654 34443
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
>TIGR00796 livcs branched-chain amino acid uptake carrier
Back Show alignment and domain information
Probab=97.49 E-value=0.0013 Score=50.09 Aligned_cols=92 Identities=8% Similarity=0.082 Sum_probs=63.7
Q ss_pred ccccccccChhHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHhhh-hcccchhhHHHhhcchhhHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAI-LTTSFVYLSCVLLFAGTVDNLLLRDK-FGQSIGGRLVVANIAWPNEWVILIGSFLSTIGAG 85 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~-~~~~~ly~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (118)
.|.|||+|..|+.+..++ ....+.|+-..+...+..+.+.+.+. ++............+..+..++.+..+++++++.
T Consensus 206 ~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~ 285 (378)
T TIGR00796 206 RGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTA 285 (378)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 399999999999999999 66667778788888887776655421 1211111111111222355678888889999999
Q ss_pred HHHhhhHHHHHHHh
Q psy13614 86 LQSLTGAPRLLQQG 99 (118)
Q Consensus 86 ~~~~~~~sR~~~a~ 99 (118)
++-+.+.++.....
T Consensus 286 iGli~~~a~~f~~~ 299 (378)
T TIGR00796 286 VGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887776
transmembrane helical spanners.
>TIGR00912 2A0309 spore germination protein (amino acid permease)
Back Show alignment and domain information
Probab=96.87 E-value=0.012 Score=43.78 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=39.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK 51 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~ 51 (118)
..+|.||| |++||+++.++.++.++|+...++..+..++++.+..
T Consensus 201 ~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~ 245 (359)
T TIGR00912 201 LFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNL 245 (359)
T ss_pred HHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhh
Confidence 45788986 5699999999999999999999999999998877653
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
>PHA02764 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=94.38 E-value=0.069 Score=40.07 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.3
Q ss_pred hhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 89 LTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 89 ~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
.--.||.+++|+-|+.+|. +|+|.||+
T Consensus 256 ~~~~srli~~~~fd~~lpe--~f~k~~~n 282 (399)
T PHA02764 256 NKIQSRLIQTMSFDKVLPE--KFSKINPN 282 (399)
T ss_pred cchHHHHHHHHHhhhhchH--HHhccCCC
Confidence 5568999999999999995 49999875
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell
Back Show alignment and domain information
Probab=93.95 E-value=0.66 Score=35.53 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=53.0
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hc-ccchhhHHHhh--cchhhHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FG-QSIGGRLVVAN--IAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (118)
+..++-+|.+.|+++.+..+..++|++..+++.+.+|++++.+- .+ +........++ .++....+..+..+++..
T Consensus 208 ~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~ 287 (394)
T PF03222_consen 208 KYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIA 287 (394)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 34454467899999999999999999999999999988765431 11 11110111111 112222334444555566
Q ss_pred HHHHHHhhhHHHHHH
Q psy13614 83 GAGLQSLTGAPRLLQ 97 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~ 97 (118)
++.++...+....+.
T Consensus 288 TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 288 TSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555555555543
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
>TIGR00814 stp serine transporter
Back Show alignment and domain information
Probab=92.51 E-value=1.7 Score=33.32 Aligned_cols=43 Identities=12% Similarity=-0.063 Sum_probs=35.9
Q ss_pred cccccc---ccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhh
Q psy13614 8 GDLADA---QRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRD 50 (118)
Q Consensus 8 ~E~k~p---~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~ 50 (118)
||-+|| +|..-|++..+..+..++|+...++..+.++++++.+
T Consensus 214 ~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~ 259 (397)
T TIGR00814 214 EEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVA 259 (397)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 455544 5778899999999999999999999999998887654
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
>PRK10483 tryptophan permease; Provisional
Back Show alignment and domain information
Probab=90.24 E-value=3.5 Score=31.98 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=51.7
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hcccchhh-HHHhh-cc-hhhHHHHHHHHHHHHHHHHH
Q psy13614 12 DAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FGQSIGGR-LVVAN-IA-WPNEWVILIGSFLSTIGAGL 86 (118)
Q Consensus 12 ~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 86 (118)
|+ |.+.|+++.+..+-.++|++...+..+.+|++++.+. .+...... ...++ .. +....+..+...++..++-+
T Consensus 221 d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 221 DP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 44 4899999999999999999999999999998766432 22221111 11111 11 11122334444455555555
Q ss_pred HHhhhHHHHHHHh
Q psy13614 87 QSLTGAPRLLQQG 99 (118)
Q Consensus 87 ~~~~~~sR~~~a~ 99 (118)
+.-.+...-+..+
T Consensus 300 Gv~LGL~d~l~D~ 312 (414)
T PRK10483 300 GVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
>PRK15132 tyrosine transporter TyrP; Provisional
Back Show alignment and domain information
Probab=89.50 E-value=7.9 Score=29.90 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=54.2
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hcccchhh-HHHh---hcchhhHHHHHHHHHHHHHHH
Q psy13614 11 ADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FGQSIGGR-LVVA---NIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 11 k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (118)
++-+|.+.|+++.+..+..++|++..+++.+.+|++++.+. ++...... .... +..| ...+......++..++
T Consensus 208 ~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~fa~~Ai~TS 286 (403)
T PRK15132 208 GGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPH-VELAVHLFADLALATS 286 (403)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChH-HHHHHHHHHHHHHHHH
Confidence 44557899999999999999999999999999998765431 11111111 1111 1112 1223444445555666
Q ss_pred HHHHhhhHHHHHHHhh
Q psy13614 85 GLQSLTGAPRLLQQGP 100 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~a 100 (118)
-++.-.+...-+..+=
T Consensus 287 FlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 287 FLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665544
>PRK13629 threonine/serine transporter TdcC; Provisional
Back Show alignment and domain information
Probab=89.09 E-value=7.4 Score=30.54 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=34.2
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhh
Q psy13614 13 AQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRD 50 (118)
Q Consensus 13 p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~ 50 (118)
.+|..-|++..+..+..++|+...+.+.+.++++++.+
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~ 285 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAE 285 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 36889999999999999999999999999999987753
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=86.38 E-value=4.1 Score=31.46 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=36.0
Q ss_pred ccccccccccC-hhHHHHHHHHHHHHHHHHHHHHHHHhcChH
Q psy13614 6 RSGDLADAQRS-IPTGTICAILTTSFVYLSCVLLFAGTVDNL 46 (118)
Q Consensus 6 ~a~E~k~p~k~-iP~aii~s~~~~~~ly~~~~~~~~~~~~~~ 46 (118)
+..|.|+++++ ++|++..+..+..++|..+.+....+.+.+
T Consensus 215 i~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 215 LVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45788888777 999999999999999999999988888764
>COG3949 Uncharacterized membrane protein [Function unknown]
Back Show alignment and domain information
Probab=80.12 E-value=24 Score=26.85 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
.+++|++++ |+.-+|-+.+-++.+++..+.+..+....+ .+.. +..|.. ..+...++.-..++.+...+..+.+
T Consensus 200 ~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~-~dIP~l--~i~~~~~~~i~lvm~vIi~~~IytT 273 (349)
T COG3949 200 PLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVN-YDIPLL--TIAKNFSPLIGLVMSVIIWLEIYTT 273 (349)
T ss_pred hhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhc-cCCcHH--HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 467899986 566677666767777777777776665544 2222 222321 1222333433334555555666777
Q ss_pred HHHHhhhHHHHHH
Q psy13614 85 GLQSLTGAPRLLQ 97 (118)
Q Consensus 85 ~~~~~~~~sR~~~ 97 (118)
..+.+++-++-+.
T Consensus 274 ~vg~iy~l~~r~~ 286 (349)
T COG3949 274 TVGLIYGLASRLT 286 (349)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666544443
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 118
4djk_A 511
Probable glutamate/gamma-aminobutyrate antiporter;
99.83 3gia_A 444
Uncharacterized protein MJ0609; membrane protein,
99.81 3l1l_A 445
Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC
99.78
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Back Hide alignment and structure
Probab=99.83 E-value=1.8e-20 Score=142.68 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH--HHhhcc---hhhHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL--VVANIA---WPNEWVILIG 76 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~ 76 (118)
+.+|++||+|||+|++|||++.++.++.++|++.++++..+++++++..++. ....+ ..+..+ .....++.+.
T Consensus 219 ~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (511)
T 4djk_A 219 ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAG--VMQTFTVLMSHVAPEIEWTVRVISAL 296 (511)
T ss_dssp GGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSST--HHHHHHHHHSSSCSSCTTHHHHHHHH
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccch--HHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998876543321 11111 222222 1123466777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 77 SFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 77 ~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 297 ~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~ 336 (511)
T 4djk_A 297 LLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNG 336 (511)
T ss_dssp HHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcCCCC
Confidence 788899999999999999999999999999 5699999874
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Back Show alignment and structure
Probab=99.81 E-value=1.1e-19 Score=136.32 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=89.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....+++++.++...+... .... .+..+..++.++.+++.
T Consensus 207 ~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~g~~~~~~i~~~~~~~~ 284 (444)
T 3gia_A 207 ITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAV--AAKPFLGNLGFLLISIGALFSI 284 (444)
T ss_dssp HHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHH--HHHHHhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988776543333211 1111 11123346777888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|+++
T Consensus 285 ~~~~~~~~~~~sR~l~a~a~dg~lP~--~f~~~~~~~ 319 (444)
T 3gia_A 285 SSAMNATIYGGANVAYSLAKDGELPE--FFERKVWFK 319 (444)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSSCCS--SCCTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH--HHhCCCCCC
Confidence 99999999999999999999999995 599998764
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Back Show alignment and structure
Probab=99.78 E-value=1.7e-19 Score=135.18 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=88.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....|++++.+.. .|...........| ...++.++.+++.+
T Consensus 210 ~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~g~~-~~~~~~~~~~~~~~ 287 (445)
T 3l1l_A 210 ASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA-SPFGDAARMALGDT-AGAIVSFCAAAGCL 287 (445)
T ss_dssp HHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTT-CTHHHHHHHHHCTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccC-cHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999998887664332 22211111101122 34567778888999
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 288 ~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~ 321 (445)
T 3l1l_A 288 GSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAG 321 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcCCCC
Confidence 999999999999999999999999 5599999874
Homologous Structure Domains
