Psyllid ID: psy13667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MADAKKKTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAPRSAGVVVNPV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
madakkkttkltdEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTlkdldgdrrcfrliggvlceKTVKEVIPTLTTNRDQLNTLINSLNEQLTKkgieineykdkfdiqlqgnktsapppkqenesaprsagvvvnpv
Flexible Loop (DISEMBL)
madakkkttkltdeevynGFQNLRAEQRQIATKLSELEQELTEHKIVLdtlkdldgdrRCFRliggvlcektvkeviptlttnrdqLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKtsapppkqenesaprsagvvvnpv
Low Complexity Region (SEG)
MADAkkkttkltDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESAPRSAGVVVNPV
Disordered region (IsUnstruct)
**************************************QELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDI******************************
Disordered Region (DISOPRED)
*******************FQNLRAE************QELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN***********EINEYKDKF*************************GVVVNP*
Disordered Region (DISEMBL)
*********KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG**************************
Disordered Region (DISPRO)
**********LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN*************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADAKKKTTKLTDEEVYNGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLxxxxxxxxxxxxxxxxxxxxxFDIQLQGNKTSAPPPKQENESAPRSAGVVVNPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9UHV9	154	Prefoldin subunit 2 OS=Ho	yes	N/A	0.909	0.850	0.466	2e-30
B0BN18	154	Prefoldin subunit 2 OS=Ra	yes	N/A	0.909	0.850	0.466	2e-30
A1A4P5	154	Prefoldin subunit 2 OS=Bo	yes	N/A	0.909	0.850	0.466	2e-30
O70591	154	Prefoldin subunit 2 OS=Mu	yes	N/A	0.902	0.844	0.470	3e-30
Q9VTE5	143	Probable prefoldin subuni	yes	N/A	0.812	0.818	0.444	5e-23
Q9LJ98	148	Probable prefoldin subuni	yes	N/A	0.722	0.702	0.375	3e-18
Q55GN3	116	Probable prefoldin subuni	yes	N/A	0.743	0.922	0.336	8e-18
A8WVJ9	142	Prefoldin subunit 2 OS=Ca	N/A	N/A	0.743	0.753	0.429	7e-17
Q9N5M2	141	Prefoldin subunit 2 OS=Ca	yes	N/A	0.791	0.808	0.421	5e-16
Q9UTC9	114	Probable prefoldin subuni	yes	N/A	0.673	0.850	0.39	2e-14

>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 11  LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
           ++ E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E
Sbjct: 21  VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80

Query: 71  KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
           +TVKEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +
Sbjct: 81  RTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139

Query: 131 ESA---PRSAGVVVN 142
           E A     SAGV+V+
Sbjct: 140 EGAGAKASSAGVLVS 154

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Homo sapiens (taxid: 9606)

>sp|B0BN18|PFD2_RAT Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 97/135 (71%), Gaps = 4/135 (2%)

Query: 11  LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
           ++ E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E
Sbjct: 21  VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80

Query: 71  KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
           +TVKEV+P L  N++Q+  +I +L++QL  KG E+NE+++K +I+L G +   P  K+ +
Sbjct: 81  RTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139

Query: 131 ESA---PRSAGVVVN 142
           E A     SAGV+V+
Sbjct: 140 EGAGAKSSSAGVLVS 154

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Rattus norvegicus (taxid: 10116)

>sp|A1A4P5|PFD2_BOVIN Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 96/135 (71%), Gaps = 4/135 (2%)

Query: 11  LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
           ++ E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E
Sbjct: 21  VSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVE 80

Query: 71  KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
           +TVKEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +
Sbjct: 81  RTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENS 139

Query: 131 ESA---PRSAGVVVN 142
           E A     SAGV+V+
Sbjct: 140 EGAGAKASSAGVLVS 154

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|O70591|PFD2_MOUSE Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 96/134 (71%), Gaps = 4/134 (2%)

Query: 12  TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEK 71
           + E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+
Sbjct: 22  SAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVER 81

Query: 72  TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENE 131
           TVKEV+P L  N++Q+  +I +L++QL  KG E+NE+++K +I+L G +   P  K+ +E
Sbjct: 82  TVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSE 140

Query: 132 SA---PRSAGVVVN 142
            A     SAGV+V+
Sbjct: 141 GAGAKASSAGVLVS 154

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 77/117 (65%)

Query: 11  LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
           L+ E +   FQ LR EQR +   L+ LE +L EHK V++TL+  D +R+CFR IGGVLCE
Sbjct: 10  LSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCE 69

Query: 71  KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPK 127
           +TVKEV+P L  N+D +   I  +   L+KKG E+N++K++ +I+++G    A   K
Sbjct: 70  RTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIRGEHLVAEGAK 126

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 72/104 (69%)

Query: 13  DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT 72
           ++ V N ++  R+E  QI + +++LE +++EH +V++ ++ LD  R+CFR+IGGVL E+T
Sbjct: 16  EQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERT 75

Query: 73  VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
           +KEV+P +  N+D L  ++  L E L KK  ++ E++ K+ I++
Sbjct: 76  IKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRI 119

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55GN3|PFD2_DICDI Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 78/107 (72%)

Query: 10  KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLC 69
           +LT+ ++   +++L+++Q+QI +++SE E ++ E+ +V++ +++L+ +R+CFR++GGVL 
Sbjct: 7   QLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLV 66

Query: 70  EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
           E+TV EV+P +  NRD +  ++  L+E L+ K  E+N++   + I++
Sbjct: 67  ERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|A8WVJ9|PFD2_CAEBR Prefoldin subunit 2 OS=Caenorhabditis briggsae GN=pfd-2 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 68/107 (63%)

Query: 16  VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKE 75
           V   F+ LR +Q++IAT+++ +E+E  E   VLD +KDL  D++CFRLI   L E TVK+
Sbjct: 22  VVEKFKQLRDQQQEIATEVTRIEEERREIGRVLDVIKDLKPDQKCFRLISDSLVEYTVKD 81

Query: 76  VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTS 122
           VIP L  N   L  +   LNEQL +KG E+N++K   +I++   K +
Sbjct: 82  VIPDLENNMTNLGLVSKQLNEQLVEKGKELNQHKTAHNIRILSEKET 128

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9N5M2|PFD2_CAEEL Prefoldin subunit 2 OS=Caenorhabditis elegans GN=pdf-2 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 69/114 (60%)

Query: 16  VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKE 75
           V   F+ LR +Q+ IA +++ +E+E  E   VL+ +KDL+ D++CFRLI   L E TVK+
Sbjct: 20  VVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKD 79

Query: 76  VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQE 129
           VIP L  N   L  +   LN+QL +KG E+N +K   +I+L   K SA   K E
Sbjct: 80  VIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRLLTEKESAELRKAE 133

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.10 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 3/100 (3%)

Query: 17  YNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEV 76
           YN +   ++  +QIA K+ +LE +  EHK+V+DTL  +D +RRCFR+I GVL E+TV  V
Sbjct: 15  YNSY---KSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTV 71

Query: 77  IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
           +P L T ++ + T +N L +Q  +   E  +++    IQ+
Sbjct: 72  VPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
156552708	149	PREDICTED: prefoldin subunit 2-like [Nas	0.902	0.872	0.571	5e-38
332026214	151	Prefoldin subunit 2 [Acromyrmex echinati	0.923	0.880	0.526	1e-34
307195538	150	Prefoldin subunit 2 [Harpegnathos saltat	0.972	0.933	0.496	3e-34
307187670	151	Prefoldin subunit 2 [Camponotus floridan	0.909	0.867	0.526	1e-33
321461461	154	hypothetical protein DAPPUDRAFT_308250 [	0.937	0.876	0.507	3e-32
340710352	154	PREDICTED: prefoldin subunit 2-like isof	0.895	0.837	0.530	1e-31
350415898	154	PREDICTED: prefoldin subunit 2-like [Bom	0.895	0.837	0.530	1e-31
350535441	147	prefoldin subunit 2-like [Acyrthosiphon	0.937	0.918	0.524	2e-31
91077738	144	PREDICTED: similar to Prefoldin subunit	0.895	0.895	0.522	2e-31
239788113	147	ACYPI008305 [Acyrthosiphon pisum]	0.937	0.918	0.524	2e-31

>gi|156552708|ref|XP_001600260.1| PREDICTED: prefoldin subunit 2-like [Nasonia vitripennis]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 107/133 (80%), Gaps = 3/133 (2%)

Query: 12  TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEK 71
           T+EE+Y GFQ LR EQR +A KL+E+E EL EH+IV+DTLK++DG R+C+R+IGG+LCE+
Sbjct: 18  TNEEIYAGFQTLRNEQRVMANKLTEMEAELNEHRIVIDTLKNVDGKRKCYRMIGGILCER 77

Query: 72  TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENE 131
           TV+EV+PTL  N+DQL  +I +LNEQLTKKG EINEYK+K++I ++G        ++E++
Sbjct: 78  TVEEVMPTLLVNKDQLAKVIETLNEQLTKKGTEINEYKEKYNIHIRGQ--DDVQRQEESK 135

Query: 132 SAPRSAGVVVNPV 144
            A R+A VV+NP+
Sbjct: 136 EAKRNA-VVINPI 147

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026214|gb|EGI66356.1| Prefoldin subunit 2 [Acromyrmex echinatior]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 100/133 (75%)

Query: 12  TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEK 71
           T EE+   FQ+LR EQR +A KLSE+E EL EHKIV+DTLK++D  R+CFR+IGG+LCE+
Sbjct: 17  TAEEILTEFQSLRNEQRMLANKLSEMEMELNEHKIVIDTLKNVDPKRKCFRMIGGLLCER 76

Query: 72  TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENE 131
           TV++V+P L TN++QL  +I++LN+Q+TKKGIEINEYK+K +I+++G        +  N 
Sbjct: 77  TVEDVMPALVTNKEQLMKVIDALNDQVTKKGIEINEYKEKHNIRIRGQDDLQQQEEDNNN 136

Query: 132 SAPRSAGVVVNPV 144
              +   +VVNP+
Sbjct: 137 KEDKRKAIVVNPI 149

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195538|gb|EFN77424.1| Prefoldin subunit 2 [Harpegnathos saltator]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 110/147 (74%), Gaps = 7/147 (4%)

Query: 4   AKKKTTKLT------DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD 57
           ++KK+TK +      +E++ + FQ LR EQR +A KLSE+E EL EHKIV+DTLK++D  
Sbjct: 3   SEKKSTKASSKDAKSNEQILSEFQTLRNEQRMMANKLSEMEMELNEHKIVIDTLKNVDPK 62

Query: 58  RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
           ++C+R+IGGVLCE+ V++V+P L  N++QL  +I++LN+QLTKKGIEINEYK+K +I+++
Sbjct: 63  KKCYRMIGGVLCERIVEDVMPALVINKEQLMKVIDTLNDQLTKKGIEINEYKEKHNIRIR 122

Query: 118 GNKTSAPPPKQENESAPRSAGVVVNPV 144
           G        +  N+ A R+A +VVNP+
Sbjct: 123 GQDDMQRQEEDSNKEAKRNA-IVVNPI 148

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187670|gb|EFN72642.1| Prefoldin subunit 2 [Camponotus floridanus]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 98/131 (74%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           EE+   FQ LR EQR +A KLSE+E EL EHKIV+DTLK++D  R+C+R+IGGVLCE+TV
Sbjct: 19  EEILTEFQVLRNEQRMLANKLSEMEMELNEHKIVIDTLKNVDPKRKCYRMIGGVLCERTV 78

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
           ++V+P L TN++QL  +I++LN+Q+TKKGIEINEYK+K +I+++G        +  N   
Sbjct: 79  EDVMPALVTNKEQLLKVIDALNDQVTKKGIEINEYKEKHNIRIRGQDDLQQQEEDNNNKE 138

Query: 134 PRSAGVVVNPV 144
            +   +VVNP+
Sbjct: 139 TKRKAIVVNPI 149

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461461|gb|EFX72493.1| hypothetical protein DAPPUDRAFT_308250 [Daphnia pulex]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 7   KTTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGG 66
           K    ++EEV  GFQ LR EQRQ+A+KLSELE +L EHK+V++TL+++D DR+CFR++GG
Sbjct: 15  KNVNKSNEEVIQGFQRLRTEQRQLASKLSELEMDLNEHKLVIETLQNVDEDRKCFRMVGG 74

Query: 67  VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG-NKTSAPP 125
           VL E+TVKEV+P LT+NRDQ+  +I  LN Q++ KG EIN++K+K +I+++  N+  +  
Sbjct: 75  VLVERTVKEVLPALTSNRDQMTKVIEVLNNQISTKGQEINDFKEKNNIRIRNQNELPSTA 134

Query: 126 PKQENESAPRSAGVVV 141
           P  E E+   + GV+V
Sbjct: 135 PDNEGENKVANQGVLV 150

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710352|ref|XP_003393756.1| PREDICTED: prefoldin subunit 2-like isoform 1 [Bombus terrestris] gi|340710354|ref|XP_003393757.1| PREDICTED: prefoldin subunit 2-like isoform 2 [Bombus terrestris]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 102/132 (77%), Gaps = 3/132 (2%)

Query: 15  EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVK 74
           E+ + FQ LR EQR +A KLSE+E EL EHKIV+DTLK++D  R+C+R+ GGVLCE+TV+
Sbjct: 19  EILSEFQMLRNEQRAMANKLSEMEMELNEHKIVIDTLKNIDPKRKCYRMTGGVLCERTVE 78

Query: 75  EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENES-- 132
           +V+P L TN++QL  +I++LN+QLTKKG+EINE+K+K +I+++G +       ++ +S  
Sbjct: 79  DVMPALVTNKEQLIKVIDALNDQLTKKGLEINEFKEKHNIRIRGQQDMQQRQGEDKDSKE 138

Query: 133 APRSAGVVVNPV 144
           A RSA VVVN +
Sbjct: 139 AKRSA-VVVNSL 149

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415898|ref|XP_003490783.1| PREDICTED: prefoldin subunit 2-like [Bombus impatiens]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 102/132 (77%), Gaps = 3/132 (2%)

Query: 15  EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVK 74
           E+ + FQ LR EQR +A KLSE+E EL EHKIV+DTLK++D  R+C+R+ GGVLCE+TV+
Sbjct: 19  EILSEFQMLRNEQRAMANKLSEMEMELNEHKIVIDTLKNIDPKRKCYRMTGGVLCERTVE 78

Query: 75  EVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENES-- 132
           +V+P L TN++QL  +I++LN+QLTKKG+EINE+K+K +I+++G +       ++ +S  
Sbjct: 79  DVMPALVTNKEQLIKVIDALNDQLTKKGLEINEFKEKHNIRIRGQQDMQQRQGEDKDSKE 138

Query: 133 APRSAGVVVNPV 144
           A RSA VVVN +
Sbjct: 139 AKRSA-VVVNSL 149

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350535441|ref|NP_001233164.1| prefoldin subunit 2-like [Acyrthosiphon pisum] gi|239788097|dbj|BAH70743.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788099|dbj|BAH70744.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788101|dbj|BAH70745.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788103|dbj|BAH70746.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788105|dbj|BAH70747.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788107|dbj|BAH70748.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788111|dbj|BAH70750.1| ACYPI008305 [Acyrthosiphon pisum] gi|239788115|dbj|BAH70752.1| ACYPI008305 [Acyrthosiphon pisum]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 10/145 (6%)

Query: 7   KTTKLTDEE-VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG 65
           K  K T+EE ++N F  LR EQRQ+ATKLSE+E +L EH IV+DTL  LD +R+CFRLIG
Sbjct: 6   KVKKPTEEELIHNTFNALRTEQRQLATKLSEIELDLNEHSIVIDTLNKLDDERKCFRLIG 65

Query: 66  GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPP 125
           GVL E+ + +V+PTL  NR ++  ++ +LNEQLTKKGIEINE+K+K +IQ++G  T   P
Sbjct: 66  GVLVERKICDVLPTLIKNRGEMGKIVKTLNEQLTKKGIEINEFKNKHNIQVKGGVT---P 122

Query: 126 PKQENES------APRSAGVVVNPV 144
             +E ES      A     V+VN V
Sbjct: 123 MTEEVESQSVDKKADHGGSVIVNNV 147

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077738|ref|XP_975157.1| PREDICTED: similar to Prefoldin subunit 2 [Tribolium castaneum] gi|270001520|gb|EEZ97967.1| hypothetical protein TcasGA2_TC000359 [Tribolium castaneum]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 97/132 (73%), Gaps = 3/132 (2%)

Query: 11  LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCE 70
           LT EE+ NGFQ LRAEQR +++KL+E E +  EHK+V+ TL++++ DRRCFRL+GGVL E
Sbjct: 13  LTPEEILNGFQALRAEQRTLSSKLTEFEADSNEHKMVIATLQNVNEDRRCFRLVGGVLTE 72

Query: 71  KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN 130
           + VK+V+P L  N ++L  LI  L EQ+TKKG+EINEY++K++I  +G     P PKQE 
Sbjct: 73  RKVKDVLPALVANLEKLKELIEKLKEQITKKGVEINEYREKYNISFRG--LDNPAPKQEE 130

Query: 131 E-SAPRSAGVVV 141
           + +A  S G V+
Sbjct: 131 QVAASESRGNVL 142

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788113|dbj|BAH70751.1| ACYPI008305 [Acyrthosiphon pisum]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 10/145 (6%)

Query: 7   KTTKLTDEE-VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG 65
           K  K T+EE ++N F  LR EQRQ+ATKLSE+E +L EH IV+DTL  LD +R+CFRLIG
Sbjct: 6   KVKKPTEEELIHNTFNALRTEQRQLATKLSEIELDLNEHSIVIDTLNKLDDERKCFRLIG 65

Query: 66  GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPP 125
           GVL E+ + +V+PTL  NR ++  ++ +LNEQLTKKGIEINE+K+K +IQ++G  T   P
Sbjct: 66  GVLVERKICDVLPTLIKNRGEMGKIVKTLNEQLTKKGIEINEFKNKHNIQVRGGVT---P 122

Query: 126 PKQENES------APRSAGVVVNPV 144
             +E ES      A     V+VN V
Sbjct: 123 MTEEVESQSVDKKADHGGSVIVNNV 147

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
UNIPROTKB|F1PLU5	154	PFDN2 "Uncharacterized protein	0.888	0.831	0.484	2.7e-29
UNIPROTKB|A1A4P5	154	PFDN2 "Prefoldin subunit 2" [B	0.888	0.831	0.477	4.4e-29
UNIPROTKB|Q9UHV9	154	PFDN2 "Prefoldin subunit 2" [H	0.888	0.831	0.477	4.4e-29
UNIPROTKB|F1S192	154	PFDN2 "Uncharacterized protein	0.888	0.831	0.477	4.4e-29
MGI|MGI:1276111	154	Pfdn2 "prefoldin 2" [Mus muscu	0.888	0.831	0.477	5.6e-29
RGD|1591406	154	Pfdn2 "prefoldin subunit 2" [R	0.888	0.831	0.477	5.6e-29
ZFIN|ZDB-GENE-060519-27	156	pfdn2 "prefoldin subunit 2" [D	0.895	0.826	0.432	3.5e-27
FB|FBgn0010741	143	l(3)01239 "lethal (3) 01239" [	0.888	0.895	0.418	2.9e-23
TAIR|locus:2077071	148	PDF2 "prefoldin 2" [Arabidopsi	0.722	0.702	0.375	1.1e-18
UNIPROTKB|G3N0K0	153	G3N0K0 "Uncharacterized protei	0.888	0.836	0.390	1.4e-18

UNIPROTKB|F1PLU5 PFDN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 64/132 (48%), Positives = 94/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  RRC+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDEARRCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALENNKEQIQKIIETLTQQLQAKGRELNEFREKHNIRLMG-EDEKPAAKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKSSSAGVLVS 154

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|A1A4P5 PFDN2 "Prefoldin subunit 2" [Bos taurus (taxid:9913)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 63/132 (47%), Positives = 94/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKASSAGVLVS 154

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|Q9UHV9 PFDN2 "Prefoldin subunit 2" [Homo sapiens (taxid:9606)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 63/132 (47%), Positives = 94/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKASSAGVLVS 154

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0016272 "prefoldin complex" evidence=NAS

GO:0006457 "protein folding" evidence=NAS;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

UNIPROTKB|F1S192 PFDN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 63/132 (47%), Positives = 94/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L +QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMG-EDEKPTSKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKASSAGVLVS 154

GO:0006457 "protein folding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

MGI|MGI:1276111 Pfdn2 "prefoldin 2" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/132 (47%), Positives = 95/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L++QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKASSAGVLVS 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=IDA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|1591406 Pfdn2 "prefoldin subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/132 (47%), Positives = 95/132 (71%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V  GF  LR EQR +A+K +ELE EL EH +V+DTLK++D  R+C+R++GGVL E+TV
Sbjct:    24 EQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTV 83

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENESA 133
             KEV+P L  N++Q+  +I +L++QL  KG E+NE+++K +I+L G +   P  K+ +E A
Sbjct:    84 KEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMG-EDEKPAAKENSEGA 142

Query:   134 ---PRSAGVVVN 142
                  SAGV+V+
Sbjct:   143 GAKSSSAGVLVS 154

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006457 "protein folding" evidence=IEA;ISO

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-060519-27 pfdn2 "prefoldin subunit 2" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 58/134 (43%), Positives = 90/134 (67%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E+V   FQ +R EQR +A+K +E E E+ EH +V+DTLK++D  R+CFRL+GGVL E+TV
Sbjct:    23 EQVVATFQRMRQEQRSMASKAAEFEMEINEHSLVIDTLKEVDPSRKCFRLVGGVLVERTV 82

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN-----KTSAPPPKQ 128
             KEV+P L  N++Q++ ++ +LN Q+  KG E+ EY+++++I+L G      K  A   K 
Sbjct:    83 KEVLPALENNKEQISKIVETLNTQMQVKGRELTEYRERYNIRLVGEDDKQGKADASQAKD 142

Query:   129 ENESAPRSAGVVVN 142
                 +   AGV+V+
Sbjct:   143 SEGGSKGGAGVLVS 156

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

FB|FBgn0010741 l(3)01239 "lethal (3) 01239" [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/129 (41%), Positives = 82/129 (63%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
             E +   FQ LR EQR +   L+ LE +L EHK V++TL+  D +R+CFR IGGVLCE+TV
Sbjct:    13 EAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTV 72

Query:    74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQEN-ES 132
             KEV+P L  N+D +   I  +   L+KKG E+N++K++ +I+++G    A   K ++ E 
Sbjct:    73 KEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIRGEHLVAEGAKGDDAED 132

Query:   133 APRSAGVVV 141
                +  V+V
Sbjct:   133 KAENRNVLV 141

GO:0048477 "oogenesis" evidence=IMP

GO:0016272 "prefoldin complex" evidence=ISS;IDA

GO:0006458 "'de novo' protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

TAIR|locus:2077071 PDF2 "prefoldin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 39/104 (37%), Positives = 72/104 (69%)

Query:    13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT 72
             ++ V N ++  R+E  QI + +++LE +++EH +V++ ++ LD  R+CFR+IGGVL E+T
Sbjct:    16 EQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERT 75

Query:    73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL 116
             +KEV+P +  N+D L  ++  L E L KK  ++ E++ K+ I++
Sbjct:    76 IKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRI 119

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|G3N0K0 G3N0K0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 52/133 (39%), Positives = 80/133 (60%)

Query:    14 EEVYNGFQNLRAEQRQIATKLSE-LEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT 72
             E V  GF  L  +QR +A+K +E L  EL EH  V DTLK+ D  R+   ++GGVL E+T
Sbjct:    22 ERVIAGFNRLGKDQRGLASKAAEELAMELDEHSAVTDTLKEADETRKSCLMLGGVLGERT 81

Query:    73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSAPPPKQENES 132
             ++E  P L   ++Q+  +  +L +QL  KG E+NE+ +K +++L G +   P  K+ +E 
Sbjct:    82 IQEAPPALGNYKEQIQKITETLTQQLQAKGKELNEFWEKHNLRLLG-EGKKPAAKENSEG 140

Query:   133 A---PRSAGVVVN 142
             A     SAGV+V+
Sbjct:   141 AGAKASSAGVLVS 153

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UTC9	PFD2_SCHPO	No assigned EC number	0.39	0.6736	0.8508	yes	N/A
P40005	PFD2_YEAST	No assigned EC number	0.3584	0.7083	0.9189	yes	N/A
O70591	PFD2_MOUSE	No assigned EC number	0.4701	0.9027	0.8441	yes	N/A
B0BN18	PFD2_RAT	No assigned EC number	0.4666	0.9097	0.8506	yes	N/A
Q9VTE5	PFD2_DROME	No assigned EC number	0.4444	0.8125	0.8181	yes	N/A
Q9N5M2	PFD2_CAEEL	No assigned EC number	0.4210	0.7916	0.8085	yes	N/A
Q9UHV9	PFD2_HUMAN	No assigned EC number	0.4666	0.9097	0.8506	yes	N/A
Q9LJ98	PFD2_ARATH	No assigned EC number	0.375	0.7222	0.7027	yes	N/A
A1A4P5	PFD2_BOVIN	No assigned EC number	0.4666	0.9097	0.8506	yes	N/A
Q55GN3	PFD2_DICDI	No assigned EC number	0.3364	0.7430	0.9224	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	2e-18
cd00632	105	cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin	4e-07
COG1382	119	COG1382, GimC, Prefoldin, chaperonin cofactor [Pos	3e-05

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 74.6 bits (184), Expect = 2e-18
 Identities = 33/106 (31%), Positives = 60/106 (56%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           +E+ N FQ L+ + + +A ++ +LE +L E ++VL+ L+ LD D + ++LIG VL ++  
Sbjct: 1   QELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDK 60

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN 119
           +EV   L   ++ L   I +L +QL K   E+ E K++        
Sbjct: 61  EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQQ 106

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

>gnl|CDD|238345 cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 22/98 (22%), Positives = 45/98 (45%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           +E     Q L+ + +    +  ++E +L E+K  L+ L+ L  D   ++L+G VL ++  
Sbjct: 2   QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEK 61

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111
           +E    L    + +   I  L  Q      ++ E ++K
Sbjct: 62  EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. Length = 105

>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 21/99 (21%), Positives = 48/99 (48%)

Query: 13  DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKT 72
            +      Q L+ + +++  +  +LE +L E +  L+ L+ LD D   ++ +G +L + +
Sbjct: 8   VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVS 67

Query: 73  VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDK 111
            +E +  L   ++ L   I +L +Q  K    + E + +
Sbjct: 68  KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG4098|consensus	140		100.0
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.94
KOG3478|consensus	120		99.94
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.91
PRK09343	121	prefoldin subunit beta; Provisional	99.91
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.91
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.85
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.6
PRK03947	140	prefoldin subunit alpha; Reviewed	99.57
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.43
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.39
PRK14011	144	prefoldin subunit alpha; Provisional	99.25
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.24
PRK01203	130	prefoldin subunit alpha; Provisional	98.75
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	98.73
KOG1760|consensus	131		97.68
KOG3048|consensus	153		97.6
KOG3501|consensus	114		96.88
PRK03947	140	prefoldin subunit alpha; Reviewed	96.87
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	96.24
KOG3313|consensus	187		95.72
PF13758	99	Prefoldin_3: Prefoldin subunit	95.23
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	95.16
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	95.07
PRK09343	121	prefoldin subunit beta; Provisional	94.79
PRK11637	428	AmiB activator; Provisional	94.14
PRK14011	144	prefoldin subunit alpha; Provisional	93.88
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	93.73
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	93.54
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	93.35
PRK11637	428	AmiB activator; Provisional	92.24
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.86
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	91.5
PRK02224	880	chromosome segregation protein; Provisional	91.35
PRK01156	895	chromosome segregation protein; Provisional	90.7
PRK03918	880	chromosome segregation protein; Provisional	89.94
PRK01203	130	prefoldin subunit alpha; Provisional	89.71
KOG3047|consensus	157		89.48
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	87.8
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	87.25
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.87
PRK03918	880	chromosome segregation protein; Provisional	85.93
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	84.67
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	82.71
PRK00736	68	hypothetical protein; Provisional	82.61
PHA02562	562	46 endonuclease subunit; Provisional	82.33
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	82.19
PF08657	259	DASH_Spc34: DASH complex subunit Spc34 ; InterPro:	81.61
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	81.55
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.06
PRK00295	68	hypothetical protein; Provisional	80.59
PHA01750	75	hypothetical protein	80.28

>KOG4098|consensus

Probab=100.00  E-value=1.9e-32  Score=202.74  Aligned_cols=116  Identities=46%  Similarity=0.792  Sum_probs=112.5

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667          8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL   87 (144)
Q Consensus         8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l   87 (144)
                      ..|++.+.++++|+.|+++++.|.+++..|+++++||.+|+++|+.++|+|+||||||||||++|+.+++|.|..++++|
T Consensus        12 ~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i   91 (140)
T KOG4098|consen   12 KEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENI   91 (140)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHH
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcCCC
Q psy13667         88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSA  123 (144)
Q Consensus        88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~~~  123 (144)
                      +..++.|..++..+.+++++|+++|||++.++.+.+
T Consensus        92 ~~~i~~l~~qL~~k~kElnkfk~~hkIrv~~e~~~~  127 (140)
T KOG4098|consen   92 EKVIKKLTDQLVQKGKELNKFKKDHKIRVVKEKESA  127 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcceeeecchhch
Confidence            999999999999999999999999999999988754

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.94  E-value=3.1e-26  Score=165.61  Aligned_cols=105  Identities=20%  Similarity=0.360  Sum_probs=103.0

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667          9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN   88 (144)
Q Consensus         9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le   88 (144)
                      .||.+++++.+||++|++++.+.++++.|+.+++||++|+++|+.|++|++|||+||||||++|++||+++|++|+++|+
T Consensus         1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie   80 (110)
T TIGR02338         1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE   80 (110)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13667         89 TLINSLNEQLTKKGIEINEYKDKFD  113 (144)
Q Consensus        89 ~~i~~l~kql~~~~~el~e~~~k~~  113 (144)
                      ..|+++++++..+++++.+++..+.
T Consensus        81 ~~i~~lek~~~~l~~~l~e~q~~l~  105 (110)
T TIGR02338        81 LRVKTLQRQEERLREQLKELQEKIQ  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999984

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG3478|consensus

Probab=99.94  E-value=5.2e-26  Score=164.09  Aligned_cols=113  Identities=28%  Similarity=0.413  Sum_probs=109.0

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667         10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT   89 (144)
Q Consensus        10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~   89 (144)
                      ....++.++.||+||.++......|+.|++++.||+.|+++|+.|++|.+|||++|||||+++.+||..+|.+|++||+.
T Consensus         4 ~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~   83 (120)
T KOG3478|consen    4 QKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISK   83 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcCCC
Q psy13667         90 LINSLNEQLTKKGIEINEYKDKFDIQLQGNKTSA  123 (144)
Q Consensus        90 ~i~~l~kql~~~~~el~e~~~k~~i~~~~~~~~~  123 (144)
                      +|++++.++.++++++.+.+..+ |++|+..+++
T Consensus        84 Eikr~e~~i~d~q~e~~k~R~~v-~k~Q~~~q~~  116 (120)
T KOG3478|consen   84 EIKRLENQIRDSQEEFEKQREAV-IKLQQAAQPA  116 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence            99999999999999999999999 9999987754

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.5e-24  Score=155.72  Aligned_cols=110  Identities=20%  Similarity=0.331  Sum_probs=105.7

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667          8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL   87 (144)
Q Consensus         8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l   87 (144)
                      ..||..++.+++||+||++++.+..++++++++++|++.|+++|+.+++|+.|||.||++||+.++++|+..|++|+|+|
T Consensus         3 ~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L   82 (119)
T COG1382           3 QLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETL   82 (119)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      +.++++|+++.+.+++++.+++..+ ++..+
T Consensus        83 e~ri~tLekQe~~l~e~l~eLq~~i-~~~l~  112 (119)
T COG1382          83 ELRIKTLEKQEEKLQERLEELQSEI-QKALG  112 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence            9999999999999999999999999 44433

>PRK09343 prefoldin subunit beta; Provisional

Probab=99.91  E-value=1.5e-23  Score=154.37  Aligned_cols=111  Identities=19%  Similarity=0.285  Sum_probs=106.0

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667          8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL   87 (144)
Q Consensus         8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l   87 (144)
                      ..||.+++.+.+||.+|++++.+.++++.|+.+++|+++|+++|+.|++|++|||+||||||++|++||+.+|++|+++|
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         88 NTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        88 e~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      +.+|++|+++...+++++.+++..+.--+++
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~  114 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK  114 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999443333

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.91  E-value=1.2e-23  Score=150.72  Aligned_cols=104  Identities=23%  Similarity=0.354  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN   92 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~   92 (144)
                      +++++.+||.|+++++.+.++++.|+++++||+.|+++|+.+++|++||++||+|||++|+++|.+.|++|+++|+.+++
T Consensus         1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~   80 (105)
T cd00632           1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK   80 (105)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         93 SLNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        93 ~l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                      +++++++.+++++.+++.++ ..++
T Consensus        81 ~l~~~~~~l~~~~~elk~~l-~~~~  104 (105)
T cd00632          81 RLERQEEDLQEKLKELQEKI-QQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            99999999999999999998 4443

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.85  E-value=3e-20  Score=131.11  Aligned_cols=104  Identities=27%  Similarity=0.471  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHH
Q psy13667         14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINS   93 (144)
Q Consensus        14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~   93 (144)
                      |+++.+|+.++.++..+.+++..++.++++|+.|+++|+.+++|++||++||++||+.+++++.+.|+++++.++.+|+.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         94 LNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        94 l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                      |++++..+.+++.+++..+...+.
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~~~  104 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYELFG  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999965554

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.60  E-value=3.1e-14  Score=103.56  Aligned_cols=99  Identities=29%  Similarity=0.444  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------------CCcceeeeec-ceeh
Q psy13667         14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD-----------------------GDRRCFRLIG-GVLC   69 (144)
Q Consensus        14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~d~~~yklvG-~VLV   69 (144)
                      +++...|++|+++++.+.+++..+..++.|++.++++|+.++                       ++.+||..|| |++|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v   81 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence            678899999999999999999999999999999999999997                       7889999999 9999


Q ss_pred             hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      +.|.++|...|++|+++|+..++.+++.+..+..++..++..+
T Consensus        82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l  124 (129)
T cd00890          82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL  124 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.57  E-value=7.3e-14  Score=104.14  Aligned_cols=109  Identities=27%  Similarity=0.380  Sum_probs=99.9

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----------Ccceee-------------ee
Q psy13667          9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG-----------DRRCFR-------------LI   64 (144)
Q Consensus         9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------d~~~yk-------------lv   64 (144)
                      ..++++.+...|++|+++++.|.+++..|...+.|+..++++|+.+++           ++.||.             ++
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG   83 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG   83 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence            568899999999999999999999999999999999999999999974           444555             78


Q ss_pred             cceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         65 GGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        65 G~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      +||+|+.|++||++.|++|++.|+..++.+.+.+..+.++++.+...+ .+++.
T Consensus        84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l-~~l~~  136 (140)
T PRK03947         84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL-QQLQQ  136 (140)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            899999999999999999999999999999999999999999999998 55443

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.43  E-value=3.9e-12  Score=93.40  Aligned_cols=99  Identities=25%  Similarity=0.359  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC------------------------Ccceeeeecceeh
Q psy13667         14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDG------------------------DRRCFRLIGGVLC   69 (144)
Q Consensus        14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------d~~~yklvG~VLV   69 (144)
                      +.+...+++|+.+++.+.+++..|...+.|+..++++|+.+.+                        ++.|+.+++|+.|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v   81 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence            5788899999999999999999999999999999999999976                        8899999999999


Q ss_pred             hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      +.+.++|++.+++|++.|+..++.+.+.+..+.++++.+...+
T Consensus        82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l  124 (129)
T cd00584          82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL  124 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.39  E-value=1.3e-11  Score=90.21  Aligned_cols=99  Identities=21%  Similarity=0.344  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeee-----------------------cceehh
Q psy13667         14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLI-----------------------GGVLCE   70 (144)
Q Consensus        14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklv-----------------------G~VLVe   70 (144)
                      +++...|++|+++++.|.+++..|...+.+++.++++|+.+++++.|..+|                       +|++|+
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            678899999999999999999999999999999999999997654455555                       999999


Q ss_pred             ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .|.++|++.+++|++.|+..++.+.+.+..+.+++..+...+
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l  123 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA  123 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.25  E-value=2.8e-10  Score=86.34  Aligned_cols=108  Identities=16%  Similarity=0.265  Sum_probs=101.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------CCCcceeeeecceeh
Q psy13667         11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL---------------------DGDRRCFRLIGGVLC   69 (144)
Q Consensus        11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------~~d~~~yklvG~VLV   69 (144)
                      .++++++..|+.|+++++.|.+.++.|..-.+++...+++|+.+                     ++|+.+.-++.|+.|
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V   82 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL   82 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence            46899999999999999999999999999999999999999888                     378899999999999


Q ss_pred             hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      ++|.++|+..+++|+++|+..++.+...++++...+++++..+..++++
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~  131 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA  131 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877666655

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.1e-10  Score=86.18  Aligned_cols=108  Identities=22%  Similarity=0.335  Sum_probs=100.2

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------------------CCcceeeeec
Q psy13667         10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD------------------------GDRRCFRLIG   65 (144)
Q Consensus        10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~------------------------~d~~~yklvG   65 (144)
                      .++++++.++||.|+.+++.|.+++..|...++|+..++++|+.+.                        .|+.+.-++.
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            5679999999999999999999999999999999999999998873                        4788999999


Q ss_pred             ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      |+-|++|.++|+..|++|++.|+..++.+...+.++...+..+.... .+++.
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~-q~~~q  136 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA-QQLQQ  136 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999999999999888 44443

>PRK01203 prefoldin subunit alpha; Provisional

Probab=98.75  E-value=3.7e-07  Score=68.25  Aligned_cols=96  Identities=18%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------------CCCcceeeeecceehh
Q psy13667         14 EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----------------------DGDRRCFRLIGGVLCE   70 (144)
Q Consensus        14 q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----------------------~~d~~~yklvG~VLVe   70 (144)
                      +++.++|+.++++.+.|.++++.|....++....++.|+.+                       ++|..+.-++.|+.|+
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE   82 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA   82 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence            67889999999999999999999999999999999999876                       3788899999999999


Q ss_pred             ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYK  109 (144)
Q Consensus        71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~  109 (144)
                      +|.++++..|+++++.|+..+.....++..++..+..+.
T Consensus        83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888888888776

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=98.73  E-value=7.5e-08  Score=69.30  Aligned_cols=90  Identities=22%  Similarity=0.387  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------CCCcceeeeecceehhccHhhHHH
Q psy13667         23 LRAEQRQIATKLSELEQELTEHKIVLDTLKDL------------------------DGDRRCFRLIGGVLCEKTVKEVIP   78 (144)
Q Consensus        23 lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l------------------------~~d~~~yklvG~VLVe~t~~Ea~~   78 (144)
                      |+++++.+.+++..|...+.|+..++++|+.+                        +++..+..++.|+.|+.|.++|..
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~   80 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE   80 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence            34566778888888888888888888888766                        367788899999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .+++|++.++..++.+.+.+..+..++..+...+
T Consensus        81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l  114 (120)
T PF02996_consen   81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL  114 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG1760|consensus

Probab=97.68  E-value=0.0024  Score=47.50  Aligned_cols=102  Identities=18%  Similarity=0.311  Sum_probs=91.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667         11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD-RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT   89 (144)
Q Consensus        11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d-~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~   89 (144)
                      ..-|+.+++|-++-.....+...+.....++.-.+-+.++|..+++| .-|==.||.|.+--..+.+..-|++.++.+.+
T Consensus        16 ~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k   95 (131)
T KOG1760|consen   16 FEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEK   95 (131)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHH
Confidence            44578889999998888888888888888888899999999999988 44555689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         90 LINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        90 ~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .|+.++...+.+...|++++.-+
T Consensus        96 ~i~~les~~e~I~~~m~~LK~~L  118 (131)
T KOG1760|consen   96 EIEELESELESISARMDELKKVL  118 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998866

>KOG3048|consensus

Probab=97.60  E-value=0.0063  Score=46.42  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=88.9

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------CCCcceeeeec
Q psy13667         10 KLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL------------------------DGDRRCFRLIG   65 (144)
Q Consensus        10 ~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l------------------------~~d~~~yklvG   65 (144)
                      ..+++++.+=-+++.++++-+...++.|..-..-+.-.++.|+.+                        ++++.+.-++-
T Consensus        12 kLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGT   91 (153)
T KOG3048|consen   12 KLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGT   91 (153)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceeccccceeEeccC
Confidence            355677777778888888888888888877777777777777665                        36778888999


Q ss_pred             ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                      |..||.|.++++....+++++|...++.+..-+.++..-......-+..+++
T Consensus        92 GYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv~  143 (153)
T KOG3048|consen   92 GYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKVQ  143 (153)
T ss_pred             ceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888777777666655554

>KOG3501|consensus

Probab=96.88  E-value=0.019  Score=41.67  Aligned_cols=100  Identities=11%  Similarity=0.175  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN   92 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~   92 (144)
                      +.++..+-..-|+++..+.-|+..+.-.+.-......+|..+-+|..+|+.+|...+..++.-+...++......+..|+
T Consensus         5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie   84 (114)
T KOG3501|consen    5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE   84 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Confidence            34555666677788888888888888888888899999999999999999999999999998888888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy13667         93 SLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        93 ~l~kql~~~~~el~e~~~k~  112 (144)
                      .|.+.-.=+++...+....+
T Consensus        85 aLqkkK~YlEk~v~eaE~nL  104 (114)
T KOG3501|consen   85 ALQKKKTYLEKTVSEAEQNL  104 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77776666666666665555

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.87  E-value=0.0062  Score=45.16  Aligned_cols=102  Identities=19%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----cc------e-eeeecceehhccHh---hHHH---
Q psy13667         16 VYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD----RR------C-FRLIGGVLCEKTVK---EVIP---   78 (144)
Q Consensus        16 ~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----~~------~-yklvG~VLVe~t~~---Ea~~---   78 (144)
                      .-..+++|+.+++.+...++.|.+++...+..+.++..+-..    ..      + |-+..++.|+-++.   .++-   
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG   83 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG   83 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence            346789999999999999999999999999999998776422    22      1 22345677766663   3332   


Q ss_pred             -------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         79 -------TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        79 -------~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                             ++.+-+++|+..++.++++++.+.+.+..+++.+ -.+..
T Consensus        84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~  129 (140)
T PRK03947         84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI-AQLAQ  129 (140)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                   8999999999999999999999999999999998 55544

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=96.24  E-value=0.024  Score=41.10  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeee----ecceeh--------hccHhhHH-----------
Q psy13667         21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRL----IGGVLC--------EKTVKEVI-----------   77 (144)
Q Consensus        21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~ykl----vG~VLV--------e~t~~Ea~-----------   77 (144)
                      +++..+++.+.+++..|.+++.+....+.+++..-+  .+-.+    ...+||        +-++.+.-           
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~--~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~   79 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIE--TLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY   79 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence            688999999999999999999999999999988742  12111    244777        33333333           


Q ss_pred             --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         78 --PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        78 --~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                        .++++-+++++.+++.++++++.+++.+..++..+ -.+.
T Consensus        80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~-~~i~  120 (126)
T TIGR00293        80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRA-QQLE  120 (126)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence              78999999999999999999999999999999998 4444

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>KOG3313|consensus

Probab=95.72  E-value=0.22  Score=39.28  Aligned_cols=95  Identities=14%  Similarity=0.186  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------------CCCcceeeeec
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL---------------------------DGDRRCFRLIG   65 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------------~~d~~~yklvG   65 (144)
                      +.-+...|++|.----++..++..|...+-+.+.-|+-+..|                           ++|.+|.=++.
T Consensus        39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGA  118 (187)
T KOG3313|consen   39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGA  118 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecc
Confidence            445556666666666678888888888888888877766555                           46788888999


Q ss_pred             ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         66 GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINE  107 (144)
Q Consensus        66 ~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e  107 (144)
                      +|++|-+.+||..-|++++....+.++.++.-++=+..++.-
T Consensus       119 nVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTT  160 (187)
T KOG3313|consen  119 NVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTT  160 (187)
T ss_pred             eeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcee
Confidence            999999999999999999998888888887777766666553

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=95.23  E-value=0.082  Score=37.93  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=37.4

Q ss_pred             ecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         64 IGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEI  105 (144)
Q Consensus        64 vG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el  105 (144)
                      +.+-.+.+|.+.++..|..|++|+..-|..|+|++..-+.++
T Consensus        57 G~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl   98 (99)
T PF13758_consen   57 GEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL   98 (99)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            335688999999999999999999999999999999877665

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.12  Score=39.37  Aligned_cols=102  Identities=16%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec---ceehh--------ccHhh-----------
Q psy13667         18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG---GVLCE--------KTVKE-----------   75 (144)
Q Consensus        18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG---~VLVe--------~t~~E-----------   75 (144)
                      ..++++-.+++.+.++++-|.+++...+..+.+|......=.-.+..|   .+||+        -.+.+           
T Consensus         6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg   85 (145)
T COG1730           6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG   85 (145)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence            467788889999999999999999999999888877665545555555   35554        33444           


Q ss_pred             --HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q psy13667         76 --VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGNK  120 (144)
Q Consensus        76 --a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~~  120 (144)
                        |..+.++=+++|+.+++.|++.+.+++..+.++-..+ -.+....
T Consensus        86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~-~~l~~~~  131 (145)
T COG1730          86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRI-EQLEQEA  131 (145)
T ss_pred             eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence              5678899999999999999999999999999999999 6666543

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=95.07  E-value=0.15  Score=36.11  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN   88 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le   88 (144)
                      .++.+-.+++.+..+.+.+..++.+...-+.|...+-+.   ...+.   .||=..---=+..++++-+..++.+++.++
T Consensus         7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG---~vfv~~~~~ea~~~Le~~~e~le~~i~~l~   83 (105)
T cd00632           7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG---NVLVKQEKEEARTELKERLETIELRIKRLE   83 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh---hHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667778888888888888888888888887755211   11221   122222222345667778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy13667         89 TLINSLNEQLTKKGIEINEYK  109 (144)
Q Consensus        89 ~~i~~l~kql~~~~~el~e~~  109 (144)
                      ..++.+.+++.++..++.+++
T Consensus        84 ~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          84 RQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888888765

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PRK09343 prefoldin subunit beta; Provisional

Probab=94.79  E-value=0.26  Score=36.10  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLIN   92 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~   92 (144)
                      ++.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+.-.--..=.++|=..---=+..++.+=+..++.++..++...+
T Consensus        16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~   95 (121)
T PRK09343         16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEK   95 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666666666666666665544221111111111222222233455566666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy13667         93 SLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        93 ~l~kql~~~~~el~e~~~k~  112 (144)
                      .+.+++.+.+..+.++...+
T Consensus        96 ~l~~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         96 KLREKLKELQAKINEMLSKY  115 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            66666666666666655544

>PRK11637 AmiB activator; Provisional

Probab=94.14  E-value=1.6  Score=37.88  Aligned_cols=89  Identities=12%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHH
Q psy13667         15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSL   94 (144)
Q Consensus        15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l   94 (144)
                      ....+++++++++..+...+..+..++++...-++.|+.   .  +          .....-+..++..+..++..|..+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~---q--i----------~~~~~~i~~~~~~i~~~~~ei~~l  108 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEE---A--I----------SQASRKLRETQNTLNQLNKQIDEL  108 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--H----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555443333332211   0  0          012445566667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         95 NEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        95 ~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      ++++..++.++...+..++-++..
T Consensus       109 ~~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637        109 NASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777555543

>PRK14011 prefoldin subunit alpha; Provisional

Probab=93.88  E-value=0.54  Score=35.67  Aligned_cols=101  Identities=13%  Similarity=0.220  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCc----ceeeeecceehhccHhhH-------------
Q psy13667         18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL----KDLDGDR----RCFRLIGGVLCEKTVKEV-------------   76 (144)
Q Consensus        18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL----~~l~~d~----~~yklvG~VLVe~t~~Ea-------------   76 (144)
                      .+++++.-.++.+.++++.|..++.-++.+..++    +.|++-.    ...=+.+++.|+-++.+.             
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V   82 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL   82 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence            4678899999999999999999999999887766    4555442    445566777777777663             


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667         77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN  119 (144)
Q Consensus        77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~  119 (144)
                      ..++++=++|++.+++.|++....+...++++...+ -.++..
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~-~~l~~~  124 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEI-TKLRKE  124 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            468899999999999999999999999999999988 666643

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=93.73  E-value=0.84  Score=31.46  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=79.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI   91 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i   91 (144)
                      .++.+..+|+.+..++..+..++..++.-+.|...+-+.-.-.-.=..||=...--=+.....+-...++..++.++..+
T Consensus         6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~   85 (106)
T PF01920_consen    6 KFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQL   85 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999988776622222224567666766778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy13667         92 NSLNEQLTKKGIEINE  107 (144)
Q Consensus        92 ~~l~kql~~~~~el~e  107 (144)
                      +.+.+.+.+++..+.+
T Consensus        86 ~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   86 KYLEKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=93.54  E-value=0.7  Score=33.02  Aligned_cols=37  Identities=30%  Similarity=0.273  Sum_probs=18.1

Q ss_pred             ccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         71 KTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINE  107 (144)
Q Consensus        71 ~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e  107 (144)
                      .++.+=+..++.+++.++..++.+.+++.+++..+.+
T Consensus        70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555555555555544443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=93.35  E-value=0.78  Score=33.93  Aligned_cols=97  Identities=16%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK-DLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI   91 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~-~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i   91 (144)
                      ++++..+++.+-.+.+++..++.+++.-+.|++.+-+-=. .-.-...+|+.==+. +...+++=+..|+.|+..|+...
T Consensus        15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~-~~~eL~er~E~Le~ri~tLekQe   93 (119)
T COG1382          15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEE-AVDELEERKETLELRIKTLEKQE   93 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666666666666666666666654432100 001122344442222 33455666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy13667         92 NSLNEQLTKKGIEINEYKD  110 (144)
Q Consensus        92 ~~l~kql~~~~~el~e~~~  110 (144)
                      +++.+++++++.++.+...
T Consensus        94 ~~l~e~l~eLq~~i~~~l~  112 (119)
T COG1382          94 EKLQERLEELQSEIQKALG  112 (119)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            6666666666666655433

>PRK11637 AmiB activator; Provisional

Probab=92.24  E-value=3.8  Score=35.56  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=19.2

Q ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         74 KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        74 ~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      ..-+..++.+++.++..|..+...+....+.+......+
T Consensus        95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~  133 (428)
T PRK11637         95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA  133 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555554444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.86  E-value=2.4  Score=31.89  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13667         19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKD   53 (144)
Q Consensus        19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~   53 (144)
                      ++..|+...+.+-..+..++.++.++...+++-+.
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~   70 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK   70 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34444444444444555555555555554444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=91.50  E-value=0.47  Score=29.45  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      +..||+.-|.+.-++|+..|+.++.++.+++++-..+-..+
T Consensus         2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~qH   42 (46)
T PF08946_consen    2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQH   42 (46)
T ss_dssp             -------------THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            67899999999999999999999999999988866665554

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>PRK02224 chromosome segregation protein; Provisional

Probab=91.35  E-value=3.7  Score=38.50  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI   91 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i   91 (144)
                      .+.+.-..+..++.+++.+...+..+++.+..++..++.++.+=.+.+|+ +-|-=+-.....+.+..+...+..+...+
T Consensus       406 ~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp-~C~r~~~~~~~~~~~~~~~~~~~~~~~~~  484 (880)
T PRK02224        406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP-ECGQPVEGSPHVETIEEDRERVEELEAEL  484 (880)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCcCCCcchhhhHHHHHHHHHHHHHHH
Confidence            34555667788889999999999999999999999999987533456674 33433344444455555666666665566


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy13667         92 NSLNEQLTKKGIEINEYKD  110 (144)
Q Consensus        92 ~~l~kql~~~~~el~e~~~  110 (144)
                      +.++..++.+..++..+..
T Consensus       485 ~~le~~l~~~~~~~e~l~~  503 (880)
T PRK02224        485 EDLEEEVEEVEERLERAED  503 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6655555555555554433

>PRK01156 chromosome segregation protein; Provisional

Probab=90.70  E-value=6.8  Score=36.98  Aligned_cols=91  Identities=13%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHH
Q psy13667         18 NGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQ   97 (144)
Q Consensus        18 ~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kq   97 (144)
                      ..+..+...+..+.+.+..+...+.+...++++|. .  ..+|=.-+.+.= +.-..+.+.....+++.++.+++.+++.
T Consensus       416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~--~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~~~  491 (895)
T PRK01156        416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-G--QSVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIEIE  491 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--CCCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555555554444 2  345666666655 6667777888888888888888888777


Q ss_pred             HHHHHHHHHHHHHHh
Q psy13667         98 LTKKGIEINEYKDKF  112 (144)
Q Consensus        98 l~~~~~el~e~~~k~  112 (144)
                      +..+.+++..+....
T Consensus       492 ~~~l~~~~~~~~~~~  506 (895)
T PRK01156        492 VKDIDEKIVDLKKRK  506 (895)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666554444

>PRK03918 chromosome segregation protein; Provisional

Probab=89.94  E-value=8.6  Score=35.95  Aligned_cols=84  Identities=24%  Similarity=0.384  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667         22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK  101 (144)
Q Consensus        22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~  101 (144)
                      .+...+..+...+..+...+.+.+..++.|....|.+.+   -|.=|-+.-..++.......++.|+.++..+...+..+
T Consensus       402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l  478 (880)
T PRK03918        402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL  478 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555566666666666677666654443322   44445555566666777777777777777777777766


Q ss_pred             HHHHHHH
Q psy13667        102 GIEINEY  108 (144)
Q Consensus       102 ~~el~e~  108 (144)
                      .+++..+
T Consensus       479 ~~~~~~~  485 (880)
T PRK03918        479 RKELREL  485 (880)
T ss_pred             HHHHHHH
Confidence            6666554

>PRK01203 prefoldin subunit alpha; Provisional

Probab=89.71  E-value=2.9  Score=31.33  Aligned_cols=94  Identities=12%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCc------ceeeeecceehhccHhhHH-------------H
Q psy13667         22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKD----LDGDR------RCFRLIGGVLCEKTVKEVI-------------P   78 (144)
Q Consensus        22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~d~------~~yklvG~VLVe~t~~Ea~-------------~   78 (144)
                      .+-.+++-+.++++.|.++++-.+.+..++..    |..-.      ...=+.|++.|+-++.+..             .
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK   83 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE   83 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence            46789999999999999999999888877643    33321      2344566666666665543             5


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667         79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQ  115 (144)
Q Consensus        79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~  115 (144)
                      ++++++++|+..++.|++-+..+...+..+...++.-
T Consensus        84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l  120 (130)
T PRK01203         84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV  120 (130)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999998543

>KOG3047|consensus

Probab=89.48  E-value=7.7  Score=29.44  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------CCCcceeeeecceehhccHhhHH
Q psy13667          9 TKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDL-----------DGDRRCFRLIGGVLCEKTVKEVI   77 (144)
Q Consensus         9 ~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----------~~d~~~yklvG~VLVe~t~~Ea~   77 (144)
                      ..|.+.....+|..+|.|+....+-+...+--+++.-.-++-=..|           +..+.+..+..++.++-+..||+
T Consensus        28 ih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAi  107 (157)
T KOG3047|consen   28 IHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAI  107 (157)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHH
Confidence            4456666677777777777666555555444443322222211122           34567788999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         78 PTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        78 ~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .......+.|..-.++|.+.-.++...+--+-.-+
T Consensus       108 Kf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl  142 (157)
T KOG3047|consen  108 KFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGL  142 (157)
T ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            99999999998888888877766666555555544

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=87.80  E-value=9.5  Score=29.43  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHH
Q psy13667         15 EVYNGFQNLRAEQR--------QIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQ   86 (144)
Q Consensus        15 ~~~~~~q~lq~q~q--------~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~   86 (144)
                      ..+..|+....+++        .+..+++.++..-.......++|+.+.+-               ..-.+..|.++++.
T Consensus        31 sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP---------------~RkEv~~vRkkID~   95 (159)
T PF04949_consen   31 SALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADP---------------MRKEVEMVRKKIDS   95 (159)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc---------------hHHHHHHHHHHHHH
Confidence            34455555555443        67777888888777777777888754321               12456789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13667         87 LNTLINSLNEQLTKKGIEINEYKDKFDIQ  115 (144)
Q Consensus        87 le~~i~~l~kql~~~~~el~e~~~k~~i~  115 (144)
                      ++.+|+.+......+++++.+|...||-+
T Consensus        96 vNreLkpl~~~cqKKEkEykealea~nEk  124 (159)
T PF04949_consen   96 VNRELKPLGQSCQKKEKEYKEALEAFNEK  124 (159)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988544

This entry represents proteins annotated as RAB6-interacting golgins.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=87.25  E-value=8.5  Score=27.27  Aligned_cols=94  Identities=16%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hcccCCCcceeeeecc
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT--------------------------LKDLDGDRRCFRLIGG   66 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee--------------------------L~~l~~d~~~yklvG~   66 (144)
                      .+.+..+++.+++++..+...+.+++.-+.+.+.+.+.                          +-.+..+--|-+-+..
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e   87 (129)
T cd00890           8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence            34455555566666666666666666555555555421                          1112223222222222


Q ss_pred             eehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         67 VLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEY  108 (144)
Q Consensus        67 VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~  108 (144)
                        .....++-+..|+++++.++..+..+.+++..+...++..
T Consensus        88 --A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          88 --AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              2456666667777777777777777777777776666553

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=86.87  E-value=11  Score=35.51  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             cHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         72 TVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        72 t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      ++.|+-..+..|+..|+.++++|...++.+++.+..+..+.
T Consensus       535 ~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  535 TRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45588889999999999999999999999999999999877

; GO: 0016021 integral to membrane

>PRK03918 chromosome segregation protein; Provisional

Probab=85.93  E-value=7.5  Score=36.35  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=9.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667         78 PTLTTNRDQLNTLINSLNEQLTKK  101 (144)
Q Consensus        78 ~~L~~r~e~le~~i~~l~kql~~~  101 (144)
                      ..+.+++..++..+..+.+.+..+
T Consensus       310 ~~l~~~~~~l~~~~~~l~~~l~~~  333 (880)
T PRK03918        310 REIEKRLSRLEEEINGIEERIKEL  333 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444333

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=84.67  E-value=8  Score=25.08  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcccCCCcceeeee
Q psy13667         15 EVYNGFQNLRAEQRQIATKLSELEQELTEH--------KIVLDTLKDLDGDRRCFRLI   64 (144)
Q Consensus        15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~--------~~VleeL~~l~~d~~~yklv   64 (144)
                      .+-.+++.++.++..+......|..++...        +.+-+.|.-..|+..+|+++
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~~   78 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKIP   78 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeCC
Confidence            344445555555555555555555555544        23344555567888888764

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=82.71  E-value=8.2  Score=25.39  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=37.5

Q ss_pred             HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      .++-+..|+.++.|.+..|+.|+..+-.-+.++..++..+ -.+..
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l-~~L~~   46 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL-RLLRE   46 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3566788999999999999999999999999999998888 44443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00736 hypothetical protein; Provisional

Probab=82.61  E-value=8.2  Score=25.51  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .++-+..|+.|+.|.+..|+.|++.+..-++.+..++..+
T Consensus         3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql   42 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL   42 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999998888877

>PHA02562 46 endonuclease subunit; Provisional

Probab=82.33  E-value=14  Score=32.60  Aligned_cols=40  Identities=18%  Similarity=0.255  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLK   52 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~   52 (144)
                      +..+......++.++..+...+..++....+.......+.
T Consensus       301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~  340 (562)
T PHA02562        301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLL  340 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555544444444444333333

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=82.19  E-value=16  Score=26.23  Aligned_cols=92  Identities=24%  Similarity=0.340  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccee-----------eeecceehhccHhh-------------H
Q psy13667         21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCF-----------RLIGGVLCEKTVKE-------------V   76 (144)
Q Consensus        21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~y-----------klvG~VLVe~t~~E-------------a   76 (144)
                      ++++..++.+...+..|..++......+.++..+-+.=.-+           -+.+++.|+-++.+             +
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v   81 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence            46778888888888888888888888888877664331111           12334444444433             2


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         77 IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        77 ~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      ...+.+-+++++.+++.+++.++.+++.+..++..+
T Consensus        82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~  117 (129)
T cd00584          82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI  117 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777788888888888888888888888888887

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=81.61  E-value=15  Score=30.40  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccee
Q psy13667         15 EVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCF   61 (144)
Q Consensus        15 ~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~y   61 (144)
                      .....|..|++.++.+...+..|+..+.|.+.=|+.+..-..+..-+
T Consensus       177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~  223 (259)
T PF08657_consen  177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD  223 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            56788999999999999999999999999999999998876665555

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=81.55  E-value=7.6  Score=24.12  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeec
Q psy13667         21 QNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIG   65 (144)
Q Consensus        21 q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG   65 (144)
                      ..|+++...|..+++.|+...+-++.|.-=-+.-.-..+||+..|
T Consensus         2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~g   46 (46)
T PF09006_consen    2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTAG   46 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccCC
Confidence            468899999999999999999999999644444444567887654

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.06  E-value=21  Score=26.79  Aligned_cols=28  Identities=11%  Similarity=0.189  Sum_probs=14.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         79 TLTTNRDQLNTLINSLNEQLTKKGIEIN  106 (144)
Q Consensus        79 ~L~~r~e~le~~i~~l~kql~~~~~el~  106 (144)
                      +|..|+..|+.+++..++.+.....++.
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK00295 hypothetical protein; Provisional

Probab=80.59  E-value=11  Score=24.94  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      .++-+..|+.++.|.+..|+.|++.+-.-++++..++..+
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql   42 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM   42 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455788999999999999999999999998888888777

>PHA01750 hypothetical protein

Probab=80.28  E-value=10  Score=25.47  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=33.4

Q ss_pred             hhccHhhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         69 CEKTVKEV-IPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        69 Ve~t~~Ea-~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      +++...+| ...|...+++|..+|..++....+++.++.++..+.
T Consensus        28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~   72 (75)
T PHA01750         28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL   72 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            34554444 456778888999888888888888888888887776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	3e-11
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	2e-08

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Length = 117

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 19/105 (18%), Positives = 48/105 (45%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           + +    ++ + + + +  +  +++ ELTE K  LD ++ L  D   ++ +G ++ + T 
Sbjct: 9   QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTK 68

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQG 118
            + +  L    + L   +N+L  Q  K   ++ E   +    L+ 
Sbjct: 69  DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Length = 107

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 16/104 (15%), Positives = 40/104 (38%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           +     FQ L+ + + I+ +   +E ++ E +  L+ L     D   ++  G +L     
Sbjct: 4   QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK 63

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
            E+   L    + L     ++  Q  +   ++ E +      ++
Sbjct: 64  DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.93
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.92
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.51
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.37
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	98.66
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	96.8
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	94.36
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	93.35
2pnv_A	43	Small conductance calcium-activated potassium chan	88.24
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	87.45
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	84.26
2yny_A	106	General control protein GCN4, putative inner MEMB	81.94
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	81.14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	80.61

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.93  E-value=1.1e-24  Score=154.05  Aligned_cols=103  Identities=16%  Similarity=0.254  Sum_probs=101.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHH
Q psy13667         11 LTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTL   90 (144)
Q Consensus        11 ~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~   90 (144)
                      |.+|+.+++|++++++++.+.+++..++.+++||+.|+++|+.+++|++||++||||||++|+++|.++|++|+++|+..
T Consensus         1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~   80 (107)
T 1fxk_A            1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR   80 (107)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q psy13667         91 INSLNEQLTKKGIEINEYKDKFD  113 (144)
Q Consensus        91 i~~l~kql~~~~~el~e~~~k~~  113 (144)
                      |++|++++..+++++.+|+..+.
T Consensus        81 i~~le~~~~~~~~~l~~lk~~l~  103 (107)
T 1fxk_A           81 EKTIERQEERVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999883

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.92  E-value=1.8e-24  Score=155.01  Aligned_cols=109  Identities=17%  Similarity=0.312  Sum_probs=105.2

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHH
Q psy13667          8 TTKLTDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQL   87 (144)
Q Consensus         8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~l   87 (144)
                      ..|+..|+++++|+.++++++.+.+++..++.+++||+.|+++|+.|++|++||++||||||++|+++|.++|++|+++|
T Consensus         3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A            3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL   82 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667         88 NTLINSLNEQLTKKGIEINEYKDKFDIQL  116 (144)
Q Consensus        88 e~~i~~l~kql~~~~~el~e~~~k~~i~~  116 (144)
                      +..|++|++++..+++++.+|+..+.-.+
T Consensus        83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999994444

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.51  E-value=2.8e-13  Score=101.38  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=103.9

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccC-CCcceeeeec------------------
Q psy13667          8 TTKLTDEEVYNGFQNLRAEQRQIATKLSEL---EQELTEHKIVLDTLKDLD-GDRRCFRLIG------------------   65 (144)
Q Consensus         8 ~~~~~~q~~~~~~q~lq~q~q~l~~q~~~L---e~ql~E~~~VleeL~~l~-~d~~~yklvG------------------   65 (144)
                      ..|++++++...+++|+.+++.+.++++.|   .+.+.|+..++++|+.++ ++..+|..+|                  
T Consensus         6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~   85 (151)
T 2zdi_C            6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVS   85 (151)
T ss_dssp             SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence            479999999999999999999999999999   999999999999999998 8888888855                  


Q ss_pred             ---ceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy13667         66 ---GVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQGN  119 (144)
Q Consensus        66 ---~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~~~  119 (144)
                         |++|+.|.+||+..|++|+++|+..++.+++.+..+..++..+...+ .++++.
T Consensus        86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l-~~l~~~  141 (151)
T 2zdi_C           86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA-QEVQQK  141 (151)
T ss_dssp             EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHT
T ss_pred             eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence               89999999999999999999999999999999999999999999999 555543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.37  E-value=2e-11  Score=89.15  Aligned_cols=105  Identities=14%  Similarity=0.287  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CC--------------------cceeeeec-cee
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD--GD--------------------RRCFRLIG-GVL   68 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d--------------------~~~yklvG-~VL   68 (144)
                      .++++...+++|+.+++.+.+++..|...+.|++.++++|+.|+  .+                    .+||-.+| |++
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~   81 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence            37899999999999999999999999999999999999999886  33                    23777777 899


Q ss_pred             hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13667         69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQL  116 (144)
Q Consensus        69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~  116 (144)
                      |+.|.+||+..|++|+++++..++.+.+.+..+...+..+...++-.+
T Consensus        82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~  129 (133)
T 1fxk_C           82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL  129 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999984333

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=98.66  E-value=7.1e-07  Score=60.83  Aligned_cols=89  Identities=24%  Similarity=0.306  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy13667         22 NLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKK  101 (144)
Q Consensus        22 ~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~  101 (144)
                      .|+-+++++..-++-++....|.+-+-.-+..+..+|++||...+.||+-|+|||+..++.-.=-...+|++|.+..+++
T Consensus         8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei   87 (99)
T 3aei_A            8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI   87 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888899999999999999999999999999999999999999999999999998888899999999999888


Q ss_pred             HHHHHHHHH
Q psy13667        102 GIEINEYKD  110 (144)
Q Consensus       102 ~~el~e~~~  110 (144)
                      ..++..+..
T Consensus        88 me~ls~l~~   96 (99)
T 3aei_A           88 MEELSKLRA   96 (99)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHhhcc
Confidence            888776543

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=96.80  E-value=0.062  Score=37.12  Aligned_cols=99  Identities=15%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI   91 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i   91 (144)
                      .+..+-..+..++.++..|...+..+.+++.+.+.++..|+..  ...|-= -|..+=.....+.+.....++..+...+
T Consensus         4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CPv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i   80 (112)
T 1l8d_A            4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCPV-CGRELTDEHREELLSKYHLDLNNSKNTL   80 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECTT-TCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCC-CCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999999999999999999773  233321 1333334445577888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy13667         92 NSLNEQLTKKGIEINEYKDKFD  113 (144)
Q Consensus        92 ~~l~kql~~~~~el~e~~~k~~  113 (144)
                      ..+..++..+..++..+...++
T Consensus        81 ~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           81 AKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888884

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=94.36  E-value=0.4  Score=32.91  Aligned_cols=93  Identities=20%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT   89 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~   89 (144)
                      ++.+..+++.+..+++.+..++..++.-+.|.+.+-+.   ...+   ..||=..---=+..++++-+..++.+++.|+.
T Consensus        15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~i---G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~   91 (117)
T 2zqm_A           15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTV---GTLIVKTTKDKAVAELKEKIETLEVRLNALER   91 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHh---hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555444321   1111   12332222233344445555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy13667         90 LINSLNEQLTKKGIEINEY  108 (144)
Q Consensus        90 ~i~~l~kql~~~~~el~e~  108 (144)
                      .++.+.+.+.+++..+.+.
T Consensus        92 ~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           92 QEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554443

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=93.35  E-value=0.62  Score=31.48  Aligned_cols=92  Identities=13%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHH
Q psy13667         13 DEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDT---LKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNT   89 (144)
Q Consensus        13 ~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~   89 (144)
                      ++.+..+++.+..+++.+..++..++.-+.|.+.+-+.   ...+   ..||=..---=+..++++-+..++.+++.|+.
T Consensus        10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~i---G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~   86 (107)
T 1fxk_A           10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSS---GNILIRVAKDELTEELQEKLETLQLREKTIER   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777777777777777777777777777766432   2222   12333333334556677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy13667         90 LINSLNEQLTKKGIEINE  107 (144)
Q Consensus        90 ~i~~l~kql~~~~~el~e  107 (144)
                      .++.+.+.+.+++..+.+
T Consensus        87 ~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           87 QEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777777766643

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=88.24  E-value=0.85  Score=27.06  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         73 VKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEIN  106 (144)
Q Consensus        73 ~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~  106 (144)
                      +=|....+..|-+.++.+|..|+..+..+...+.
T Consensus         7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~   40 (43)
T 2pnv_A            7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH   40 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888999999999999999988888877664

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=87.45  E-value=0.53  Score=33.29  Aligned_cols=94  Identities=13%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceee--eecceehh--------cc----------Hhh---
Q psy13667         19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFR--LIGGVLCE--------KT----------VKE---   75 (144)
Q Consensus        19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yk--lvG~VLVe--------~t----------~~E---   75 (144)
                      +.++|+..++.+......+..++...+..+.++...-+.=.-+.  -...++|+        -.          ++.   
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~   81 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence            45778888888888888888888888877777766532211111  11234433        22          221   


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      +..++++=+++++.+++.++++++.+++.+..++..+
T Consensus        82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i  118 (133)
T 1fxk_C           82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIM  118 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2356777788888888888888888888888888877

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=84.26  E-value=4.2  Score=24.33  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         79 TLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        79 ~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                      .++++++.|+..++.|...+..+-.+....+.+++.+|.
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit   40 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLS   40 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888888888888888888888876664

>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A

Probab=81.94  E-value=4.7  Score=28.23  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             cceeeeecceehhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         58 RRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD  110 (144)
Q Consensus        58 ~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~  110 (144)
                      +.-|.+-|..  -.++.+|+..|..++..+...|..+..++..++.++..+++
T Consensus        54 aPtY~I~g~~--YnnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~  104 (106)
T 2yny_A           54 APLYEVGTGI--YNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK  104 (106)
T ss_dssp             CCCEEETTEE--ESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEeCCce--eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5667776653  47899999999999999999999999999999999988764

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=81.14  E-value=6.8  Score=25.58  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=32.9

Q ss_pred             HhhHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13667         73 VKEVIPTLTTNRDQL---NTLINSLNEQLTKKGIEINEYKDKFDIQLQG  118 (144)
Q Consensus        73 ~~Ea~~~L~~r~e~l---e~~i~~l~kql~~~~~el~e~~~k~~i~~~~  118 (144)
                      +.+....|.++.+.|   +..|+.+++.+..+...+.+++..+ -++++
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL-DKfrS   68 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL-DKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence            555566666666544   4578888999999999999998888 55554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=80.61  E-value=26  Score=33.14  Aligned_cols=41  Identities=10%  Similarity=0.012  Sum_probs=27.5

Q ss_pred             hccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13667         70 EKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKD  110 (144)
Q Consensus        70 e~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~  110 (144)
                      +....+....|.+.+..|+.+...|+.++.+++..+.+..+
T Consensus      1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555677777777777777777777777765555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1fxka_	107	a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Meth	9e-18

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 107

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 71.4 bits (175), Expect = 9e-18
 Identities = 16/104 (15%), Positives = 40/104 (38%)

Query: 14  EEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTV 73
           +     FQ L+ + + I+ +   +E ++ E +  L+ L     D   ++  G +L     
Sbjct: 4   QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK 63

Query: 74  KEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ 117
            E+   L    + L     ++  Q  +   ++ E +      ++
Sbjct: 64  DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.95
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.26
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	95.96
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	93.54

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.95  E-value=2e-27  Score=168.22  Aligned_cols=103  Identities=16%  Similarity=0.251  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcceeeeecceehhccHhhHHHHHHHhHHHHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLNTLI   91 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le~~i   91 (144)
                      ++++.+++|+.+|++++.+.+++++|+++++||++|+++|+.+++|++|||+||||||++|+++++++|.+|+++|+.+|
T Consensus         2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i   81 (107)
T d1fxka_           2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE   81 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q psy13667         92 NSLNEQLTKKGIEINEYKDKFDI  114 (144)
Q Consensus        92 ~~l~kql~~~~~el~e~~~k~~i  114 (144)
                      +++++++..+++++.+|++++..
T Consensus        82 ~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          82 KTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999943

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=8.9e-11  Score=83.68  Aligned_cols=101  Identities=13%  Similarity=0.253  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------------CCcceeeeeccee
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLD-----------------------GDRRCFRLIGGVL   68 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~d~~~yklvG~VL   68 (144)
                      +++++..+++.|+++++.+.+++..+...+.|+..++++|+.++                       +++.|+-++.|+.
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            47899999999999999999999999999999999999998873                       5788999999999


Q ss_pred             hhccHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13667         69 CEKTVKEVIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKF  112 (144)
Q Consensus        69 Ve~t~~Ea~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~  112 (144)
                      |++|.++|+..+++|++.|+..++.+.+.+..+...+..+...+
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.96  E-value=0.0063  Score=41.71  Aligned_cols=98  Identities=13%  Similarity=0.271  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----c------ceeeeecceehhccHhh-------------
Q psy13667         19 GFQNLRAEQRQIATKLSELEQELTEHKIVLDTLKDLDGD----R------RCFRLIGGVLCEKTVKE-------------   75 (144)
Q Consensus        19 ~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----~------~~yklvG~VLVe~t~~E-------------   75 (144)
                      .+++|..+++.+...+..|..++...+..+.++..+...    .      ..+-+.+++.|+-.+.+             
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            478899999999999999999999999999999876432    1      11223445556665555             


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13667         76 VIPTLTTNRDQLNTLINSLNEQLTKKGIEINEYKDKFDIQLQ  117 (144)
Q Consensus        76 a~~~L~~r~e~le~~i~~l~kql~~~~~el~e~~~k~~i~~~  117 (144)
                      +..++++-+++++.+++.+++.++.+..++..++..+ ..+.
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i-~~l~  122 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIM-MKLS  122 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            4567889999999999999999999999999999998 4443

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.54  E-value=0.25  Score=32.38  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCcceeeeecceehhccHhhHHHHHHHhHHHHH
Q psy13667         12 TDEEVYNGFQNLRAEQRQIATKLSELEQELTEHKIVLDTL---KDLDGDRRCFRLIGGVLCEKTVKEVIPTLTTNRDQLN   88 (144)
Q Consensus        12 ~~q~~~~~~q~lq~q~q~l~~q~~~Le~ql~E~~~VleeL---~~l~~d~~~yklvG~VLVe~t~~Ea~~~L~~r~e~le   88 (144)
                      .++.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+.=   +.+  +...++ .---=+..++.+=+..++.+++.++
T Consensus         9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~v--G~vLv~-~~~~e~~~~l~~~~e~l~~~i~~l~   85 (107)
T d1fxka_           9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSS--GNILIR-VAKDELTEELQEKLETLQLREKTIE   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEE--TTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHh--cchhhc-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999999977665431   111  122222 2223356677888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy13667         89 TLINSLNEQLTKKGIEINEY  108 (144)
Q Consensus        89 ~~i~~l~kql~~~~~el~e~  108 (144)
                      ..++.+.+.+.++++++.+.
T Consensus        86 ~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          86 RQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988753